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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051576
- # sysname Linux
- # hostname tars-905
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051576
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1314190.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1295752.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1296868.414534, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 13918.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 269856.533278, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 274919.748501, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 544776.281779, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 269094.666303, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 270085.466452, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 539180.132755, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 61247.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 732799.281779, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1160821.414534, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1146903.414534, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1144007.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1754129.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.794531, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.060508, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 191, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 186, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 377, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1654045.415020, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 05:39:16
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 19:10:30
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 19:10:30
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7766 7928.1 Left-Lateral-Ventricle 24.4109 16.1789 0.0000 109.0000 109.0000
- 2 5 869 842.4 Left-Inf-Lat-Vent 25.8170 17.2259 0.0000 79.0000 79.0000
- 3 7 12179 12783.5 Left-Cerebellum-White-Matter 85.3928 7.3949 17.0000 113.0000 96.0000
- 4 8 62381 62291.0 Left-Cerebellum-Cortex 63.4524 14.2213 0.0000 138.0000 138.0000
- 5 10 8223 8059.0 Left-Thalamus-Proper 86.0609 9.9925 28.0000 120.0000 92.0000
- 6 11 3871 3925.9 Left-Caudate 77.5174 8.5405 33.0000 106.0000 73.0000
- 7 12 5262 5226.6 Left-Putamen 79.5105 8.1498 39.0000 108.0000 69.0000
- 8 13 1940 1902.4 Left-Pallidum 92.2309 5.8956 59.0000 110.0000 51.0000
- 9 14 988 976.1 3rd-Ventricle 31.3209 15.8932 0.0000 82.0000 82.0000
- 10 15 2811 2896.0 4th-Ventricle 23.2732 11.7110 0.0000 79.0000 79.0000
- 11 16 22137 22142.6 Brain-Stem 81.7132 11.7386 0.0000 135.0000 135.0000
- 12 17 4286 4138.9 Left-Hippocampus 65.7809 12.1703 0.0000 117.0000 117.0000
- 13 18 1761 1722.2 Left-Amygdala 68.3986 8.7966 12.0000 103.0000 91.0000
- 14 24 721 695.4 CSF 46.6921 19.1669 0.0000 109.0000 109.0000
- 15 26 586 578.0 Left-Accumbens-area 68.1911 6.3870 46.0000 88.0000 42.0000
- 16 28 4635 4487.0 Left-VentralDC 86.6734 12.3923 10.0000 133.0000 123.0000
- 17 30 21 36.4 Left-vessel 55.6667 10.5846 34.0000 71.0000 37.0000
- 18 31 394 342.6 Left-choroid-plexus 48.6371 13.6017 14.0000 89.0000 75.0000
- 19 43 4175 4204.6 Right-Lateral-Ventricle 31.2632 18.8575 0.0000 101.0000 101.0000
- 20 44 366 420.7 Right-Inf-Lat-Vent 38.2951 18.3029 0.0000 98.0000 98.0000
- 21 46 12668 13293.3 Right-Cerebellum-White-Matter 85.5114 7.3787 6.0000 117.0000 111.0000
- 22 47 64178 64156.0 Right-Cerebellum-Cortex 61.2922 15.1356 0.0000 138.0000 138.0000
- 23 49 7796 7585.6 Right-Thalamus-Proper 84.9932 9.3445 34.0000 118.0000 84.0000
- 24 50 3787 3765.1 Right-Caudate 77.5210 7.8971 21.0000 104.0000 83.0000
- 25 51 5135 5071.3 Right-Putamen 80.1566 7.5358 17.0000 104.0000 87.0000
- 26 52 2021 1972.7 Right-Pallidum 92.2538 6.7100 43.0000 118.0000 75.0000
- 27 53 4838 4735.5 Right-Hippocampus 66.3997 10.9121 2.0000 137.0000 135.0000
- 28 54 1879 1819.3 Right-Amygdala 67.8968 8.8737 26.0000 101.0000 75.0000
- 29 58 657 640.5 Right-Accumbens-area 70.2085 6.7124 50.0000 93.0000 43.0000
- 30 60 4599 4436.8 Right-VentralDC 87.0313 12.2418 23.0000 140.0000 117.0000
- 31 62 21 23.7 Right-vessel 39.6190 20.5876 0.0000 65.0000 65.0000
- 32 63 402 379.4 Right-choroid-plexus 54.8035 11.1735 20.0000 103.0000 83.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 659 681.6 WM-hypointensities 64.0379 22.9750 0.0000 105.0000 105.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 132 135.3 Optic-Chiasm 79.7348 24.3483 9.0000 124.0000 115.0000
- 41 251 980 925.6 CC_Posterior 100.0214 14.6071 40.0000 127.0000 87.0000
- 42 252 549 493.0 CC_Mid_Posterior 94.2295 20.4851 4.0000 125.0000 121.0000
- 43 253 557 516.9 CC_Central 97.2926 16.9092 41.0000 128.0000 87.0000
- 44 254 561 529.7 CC_Mid_Anterior 101.3815 17.1588 30.0000 136.0000 106.0000
- 45 255 1160 1103.6 CC_Anterior 99.3914 21.0169 7.0000 180.0000 173.0000
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