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0051560
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051560 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-930
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051560
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8389.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 269575.799679, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 268089.838374, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 537665.638052, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1774789.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1356928.322187, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 09:37:35 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 19:07:19 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 19:07:19 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      1418     1392.2  wm-lh-bankssts                    99.9528     7.0692    78.0000   119.0000    41.0000 
    66. 

  66.   2 3002      2898     2874.6  wm-lh-caudalanteriorcingulate    104.6087     7.3362    80.0000   130.0000    50.0000 
    67. 

  67.   3 3003      7948     7901.9  wm-lh-caudalmiddlefrontal        101.2981     7.2565    72.0000   122.0000    50.0000 
    68. 

  68.   4 3005      4105     4229.9  wm-lh-cuneus                      98.1854     9.0044     7.0000   124.0000   117.0000 
    69. 

  69.   5 3006       934      928.2  wm-lh-entorhinal                  88.8405     8.0563    68.0000   115.0000    47.0000 
    70. 

  70.   6 3007      8894     8831.0  wm-lh-fusiform                    95.2049     8.7457    24.0000   131.0000   107.0000 
    71. 

  71.   7 3008     10126    10300.4  wm-lh-inferiorparietal           101.4898     8.2317    73.0000   127.0000    54.0000 
    72. 

  72.   8 3009      7514     7523.5  wm-lh-inferiortemporal            94.9907     8.4464    60.0000   151.0000    91.0000 
    73. 

  73.   9 3010      3914     3864.7  wm-lh-isthmuscingulate           102.1101     8.7637    24.0000   121.0000    97.0000 
    74. 

  74.  10 3011     13999    13975.2  wm-lh-lateraloccipital            95.0915    11.0479     5.0000   132.0000   127.0000 
    75. 

  75.  11 3012      7941     7783.4  wm-lh-lateralorbitofrontal        95.0184     9.4342    47.0000   130.0000    83.0000 
    76. 

  76.  12 3013      6269     6235.7  wm-lh-lingual                     92.9676    11.0555     0.0000   120.0000   120.0000 
    77. 

  77.  13 3014      4685     4679.0  wm-lh-medialorbitofrontal         93.8557    12.0596    20.0000   127.0000   107.0000 
    78. 

  78.  14 3015      6512     6601.1  wm-lh-middletemporal              97.2313     7.4325    67.0000   116.0000    49.0000 
    79. 

  79.  15 3016      1387     1425.4  wm-lh-parahippocampal             94.3035     7.9157    67.0000   119.0000    52.0000 
    80. 

  80.  16 3017      3920     3995.8  wm-lh-paracentral                 95.7551     6.4327    73.0000   113.0000    40.0000 
    81. 

  81.  17 3018      4598     4630.8  wm-lh-parsopercularis            102.8419     8.0977    60.0000   128.0000    68.0000 
    82. 

  82.  18 3019      1064     1063.3  wm-lh-parsorbitalis               98.8675     8.1922    73.0000   118.0000    45.0000 
    83. 

  83.  19 3020      4119     4084.6  wm-lh-parstriangularis           104.3076     8.0580    79.0000   129.0000    50.0000 
    84. 

  84.  20 3021      4079     4069.9  wm-lh-pericalcarine               88.0846    17.0905     0.0000   119.0000   119.0000 
    85. 

  85.  21 3022      8020     8391.7  wm-lh-postcentral                 99.4696     8.8239    70.0000   125.0000    55.0000 
    86. 

  86.  22 3023      6581     6543.8  wm-lh-posteriorcingulate         103.1545     7.8801    59.0000   130.0000    71.0000 
    87. 

  87.  23 3024     16705    16803.4  wm-lh-precentral                  98.4948     8.1499    50.0000   125.0000    75.0000 
    88. 

  88.  24 3025     12088    11949.3  wm-lh-precuneus                  102.7970     7.8790    19.0000   126.0000   107.0000 
    89. 

  89.  25 3026      2751     2717.7  wm-lh-rostralanteriorcingulate    99.8357     8.9675    19.0000   123.0000   104.0000 
    90. 

  90.  26 3027     15765    15874.9  wm-lh-rostralmiddlefrontal       104.3857     8.0639    70.0000   132.0000    62.0000 
    91. 

  91.  27 3028     21292    21351.6  wm-lh-superiorfrontal            100.2278     7.7969    64.0000   128.0000    64.0000 
    92. 

  92.  28 3029     14055    14195.5  wm-lh-superiorparietal            99.5274     8.6033    67.0000   129.0000    62.0000 
    93. 

  93.  29 3030      7715     7843.5  wm-lh-superiortemporal            98.3925     7.4211    70.0000   121.0000    51.0000 
    94. 

  94.  30 3031      9067     9168.4  wm-lh-supramarginal              106.1157     7.5694    79.0000   126.0000    47.0000 
    95. 

  95.  31 3032       213      207.5  wm-lh-frontalpole                102.0094     9.7148    81.0000   122.0000    41.0000 
    96. 

  96.  32 3033       539      565.3  wm-lh-temporalpole                87.9109     8.0624    68.0000   113.0000    45.0000 
    97. 

  97.  33 3034       865      833.6  wm-lh-transversetemporal          94.2728     7.7221    77.0000   114.0000    37.0000 
    98. 

  98.  34 3035     11187    10960.0  wm-lh-insula                      95.3231     9.7807    42.0000   120.0000    78.0000 
    99. 

  99.  35 4001      1020     1025.9  wm-rh-bankssts                   101.0863     8.3168    75.0000   120.0000    45.0000 
    100. 

  100.  36 4002      2977     2958.4  wm-rh-caudalanteriorcingulate    106.0894     7.7241    78.0000   133.0000    55.0000 
    101. 

  101.  37 4003      8464     8457.8  wm-rh-caudalmiddlefrontal         99.1486     7.6110    15.0000   119.0000   104.0000 
    102. 

  102.  38 4005      3630     3728.2  wm-rh-cuneus                      98.3273     9.2089    12.0000   125.0000   113.0000 
    103. 

  103.  39 4006       845      862.7  wm-rh-entorhinal                  87.4012     8.7185    67.0000   113.0000    46.0000 
    104. 

  104.  40 4007      7658     7520.0  wm-rh-fusiform                    91.9923     8.9774    45.0000   117.0000    72.0000 
    105. 

  105.  41 4008     12260    12413.8  wm-rh-inferiorparietal           104.6806     7.8879    76.0000   131.0000    55.0000 
    106. 

  106.  42 4009      7561     7592.3  wm-rh-inferiortemporal            92.5564     8.4298    48.0000   128.0000    80.0000 
    107. 

  107.  43 4010      3553     3527.2  wm-rh-isthmuscingulate           102.4641     8.3455    32.0000   129.0000    97.0000 
    108. 

  108.  44 4011     13508    13445.9  wm-rh-lateraloccipital            95.3357     9.9499     7.0000   130.0000   123.0000 
    109. 

  109.  45 4012      7963     7770.2  wm-rh-lateralorbitofrontal        96.0507    10.7614    11.0000   136.0000   125.0000 
    110. 

  110.  46 4013      7100     7220.6  wm-rh-lingual                     92.0238     9.8702     1.0000   120.0000   119.0000 
    111. 

  111.  47 4014      3765     3761.0  wm-rh-medialorbitofrontal         99.6821    10.1232    49.0000   133.0000    84.0000 
    112. 

  112.  48 4015      7244     7348.2  wm-rh-middletemporal              95.3901     8.2464    66.0000   121.0000    55.0000 
    113. 

  113.  49 4016      1338     1364.6  wm-rh-parahippocampal             93.3543     8.2327    69.0000   116.0000    47.0000 
    114. 

  114.  50 4017      5867     5977.7  wm-rh-paracentral                 97.7600     7.5686    72.0000   122.0000    50.0000 
    115. 

  115.  51 4018      4207     4245.9  wm-rh-parsopercularis            100.1702     7.5690    75.0000   118.0000    43.0000 
    116. 

  116.  52 4019      1543     1510.4  wm-rh-parsorbitalis               98.2417     8.9034    76.0000   126.0000    50.0000 
    117. 

  117.  53 4020      3838     3817.5  wm-rh-parstriangularis           103.0946     7.7027    79.0000   125.0000    46.0000 
    118. 

  118.  54 4021      5563     5676.1  wm-rh-pericalcarine               92.9667    10.6221     1.0000   119.0000   118.0000 
    119. 

  119.  55 4022      8272     8710.0  wm-rh-postcentral                 98.1962     8.6475    72.0000   127.0000    55.0000 
    120. 

  120.  56 4023      4876     4830.9  wm-rh-posteriorcingulate         103.4573     8.1255    55.0000   128.0000    73.0000 
    121. 

  121.  57 4024     16876    16950.9  wm-rh-precentral                  97.7287     7.9362    29.0000   122.0000    93.0000 
    122. 

  122.  58 4025     13998    14050.9  wm-rh-precuneus                   99.3438    14.1366     0.0000   125.0000   125.0000 
    123. 

  123.  59 4026      2270     2244.7  wm-rh-rostralanteriorcingulate   103.8282     8.9045    67.0000   126.0000    59.0000 
    124. 

  124.  60 4027     14477    14525.7  wm-rh-rostralmiddlefrontal       104.0393     8.5775    74.0000   137.0000    63.0000 
    125. 

  125.  61 4028     22433    22543.6  wm-rh-superiorfrontal            100.6600     8.4024    55.0000   131.0000    76.0000 
    126. 

  126.  62 4029     11421    11531.3  wm-rh-superiorparietal            99.5674     8.8531    62.0000   131.0000    69.0000 
    127. 

  127.  63 4030      6800     6886.0  wm-rh-superiortemporal            95.9313     8.4438    66.0000   120.0000    54.0000 
    128. 

  128.  64 4031      8237     8278.9  wm-rh-supramarginal              104.8438     7.6566    76.0000   127.0000    51.0000 
    129. 

  129.  65 4032       312      300.9  wm-rh-frontalpole                101.0449     9.4629    81.0000   125.0000    44.0000 
    130. 

  130.  66 4033       620      638.7  wm-rh-temporalpole                83.7387     7.4320    64.0000   104.0000    40.0000 
    131. 

  131.  67 4034       691      679.7  wm-rh-transversetemporal          93.0318     7.9134    75.0000   111.0000    36.0000 
    132. 

  132.  68 4035     10529    10350.8  wm-rh-insula                      93.2212     9.8062    59.0000   119.0000    60.0000 
    133. 

  133.  69 5001     35319    34886.1  Left-UnsegmentedWhiteMatter      100.8892    10.2066     0.0000   137.0000   137.0000 
    134. 

  134.  70 5002     35159    34981.4  Right-UnsegmentedWhiteMatter     101.0077     9.2011     6.0000   131.0000   125.0000 
    135.