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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051560
- # sysname Linux
- # hostname tars-930
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051560
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1295147.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1282760.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1283843.713511, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8389.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273558.171815, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 276721.903644, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 550280.075459, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 269575.799679, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 268089.838374, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 537665.638052, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64316.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 724882.075459, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1162713.713511, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1154324.713511, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1151107.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1774789.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.954470, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.307946, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 288, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 309, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 597, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1356928.322187, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 09:32:13
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 19:07:19
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 19:07:19
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3736 3866.2 Left-Lateral-Ventricle 32.2096 20.2754 0.0000 112.0000 112.0000
- 2 5 412 418.8 Left-Inf-Lat-Vent 32.6068 19.5217 0.0000 78.0000 78.0000
- 3 7 11061 11914.8 Left-Cerebellum-White-Matter 90.0268 7.7204 3.0000 116.0000 113.0000
- 4 8 54341 53985.0 Left-Cerebellum-Cortex 65.9354 16.0739 0.0000 142.0000 142.0000
- 5 10 9039 8840.4 Left-Thalamus-Proper 87.7049 9.2816 34.0000 121.0000 87.0000
- 6 11 3591 3603.0 Left-Caudate 80.6207 8.0704 43.0000 106.0000 63.0000
- 7 12 5883 5847.0 Left-Putamen 83.6204 7.9533 31.0000 107.0000 76.0000
- 8 13 2327 2278.7 Left-Pallidum 92.3949 6.8362 27.0000 116.0000 89.0000
- 9 14 732 714.8 3rd-Ventricle 37.4618 18.0549 2.0000 82.0000 80.0000
- 10 15 2458 2533.7 4th-Ventricle 24.3173 13.1286 0.0000 99.0000 99.0000
- 11 16 19819 19791.4 Brain-Stem 83.7916 11.2004 2.0000 138.0000 136.0000
- 12 17 4387 4271.5 Left-Hippocampus 70.7691 9.5071 15.0000 128.0000 113.0000
- 13 18 1496 1454.9 Left-Amygdala 68.1564 7.3620 33.0000 97.0000 64.0000
- 14 24 808 799.4 CSF 45.9047 19.1629 1.0000 95.0000 94.0000
- 15 26 677 683.9 Left-Accumbens-area 69.6839 5.7938 47.0000 90.0000 43.0000
- 16 28 4485 4425.4 Left-VentralDC 88.7157 10.5443 28.0000 127.0000 99.0000
- 17 30 14 20.9 Left-vessel 49.8571 16.2852 17.0000 70.0000 53.0000
- 18 31 232 221.7 Left-choroid-plexus 60.8147 12.6445 22.0000 86.0000 64.0000
- 19 43 3139 3211.0 Right-Lateral-Ventricle 32.0558 19.0330 0.0000 99.0000 99.0000
- 20 44 535 537.8 Right-Inf-Lat-Vent 25.4168 18.0187 0.0000 94.0000 94.0000
- 21 46 10193 11041.4 Right-Cerebellum-White-Matter 89.6941 7.0117 14.0000 123.0000 109.0000
- 22 47 55838 55766.7 Right-Cerebellum-Cortex 64.2516 16.6727 0.0000 131.0000 131.0000
- 23 49 8636 8442.4 Right-Thalamus-Proper 86.0932 9.1804 13.0000 121.0000 108.0000
- 24 50 3796 3704.8 Right-Caudate 80.9170 8.1893 45.0000 106.0000 61.0000
- 25 51 5806 5691.1 Right-Putamen 84.3242 7.5905 36.0000 112.0000 76.0000
- 26 52 2291 2261.2 Right-Pallidum 93.1659 5.9678 48.0000 112.0000 64.0000
- 27 53 4827 4643.2 Right-Hippocampus 67.5011 11.3758 3.0000 113.0000 110.0000
- 28 54 1971 1908.0 Right-Amygdala 68.7697 7.8047 34.0000 99.0000 65.0000
- 29 58 668 644.4 Right-Accumbens-area 72.6707 7.7202 54.0000 102.0000 48.0000
- 30 60 4482 4321.2 Right-VentralDC 88.1894 11.2594 10.0000 130.0000 120.0000
- 31 62 28 36.6 Right-vessel 48.9286 13.0581 24.0000 72.0000 48.0000
- 32 63 350 334.1 Right-choroid-plexus 62.3314 11.5966 28.0000 88.0000 60.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 2682 2613.2 WM-hypointensities 71.8266 18.6097 0.0000 113.0000 113.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 118 119.7 Optic-Chiasm 78.7542 23.0165 12.0000 120.0000 108.0000
- 41 251 1076 1040.1 CC_Posterior 100.3866 16.6239 18.0000 131.0000 113.0000
- 42 252 635 585.2 CC_Mid_Posterior 100.2441 15.1790 38.0000 138.0000 100.0000
- 43 253 838 775.4 CC_Central 97.0155 15.7523 36.0000 128.0000 92.0000
- 44 254 774 693.3 CC_Mid_Anterior 98.1434 18.3841 6.0000 135.0000 129.0000
- 45 255 1056 998.9 CC_Anterior 101.9091 22.0333 20.0000 176.0000 156.0000
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