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0051485
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051485 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-902
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051485
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 36580.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 257432.721129, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 255967.384430, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 513400.105559, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1971453.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1892607.086243, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 02:08:58 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 16:51:13 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 16:51:13 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3198     3262.6  wm-lh-bankssts                   103.3111     4.0271    88.0000   115.0000    27.0000 
    66. 

  66.   2 3002      2979     2943.9  wm-lh-caudalanteriorcingulate     97.3693     5.3424    62.0000   110.0000    48.0000 
    67. 

  67.   3 3003      7386     7607.4  wm-lh-caudalmiddlefrontal        101.2173     3.9588    79.0000   113.0000    34.0000 
    68. 

  68.   4 3005      3342     3394.7  wm-lh-cuneus                      98.2151     4.9771    83.0000   109.0000    26.0000 
    69. 

  69.   5 3006      1326     1412.1  wm-lh-entorhinal                  89.1146     5.7544    73.0000   105.0000    32.0000 
    70. 

  70.   6 3007      6830     6953.2  wm-lh-fusiform                    95.5640     5.4167    67.0000   109.0000    42.0000 
    71. 

  71.   7 3008     11045    11578.9  wm-lh-inferiorparietal           104.5793     4.2192    90.0000   118.0000    28.0000 
    72. 

  72.   8 3009      7555     7924.4  wm-lh-inferiortemporal            98.2584     6.0921    77.0000   118.0000    41.0000 
    73. 

  73.   9 3010      4037     4106.7  wm-lh-isthmuscingulate            98.3641     5.5305    40.0000   111.0000    71.0000 
    74. 

  74.  10 3011     11884    12470.4  wm-lh-lateraloccipital            99.3416     4.9158    82.0000   113.0000    31.0000 
    75. 

  75.  11 3012      7616     7700.1  wm-lh-lateralorbitofrontal        99.6388     5.4895    76.0000   111.0000    35.0000 
    76. 

  76.  12 3013      4553     4764.3  wm-lh-lingual                     93.6719     5.3900    62.0000   107.0000    45.0000 
    77. 

  77.  13 3014      4558     4571.6  wm-lh-medialorbitofrontal         95.4838     8.1777    49.0000   114.0000    65.0000 
    78. 

  78.  14 3015      7330     7602.5  wm-lh-middletemporal             100.4718     5.2572    81.0000   114.0000    33.0000 
    79. 

  79.  15 3016      1448     1560.9  wm-lh-parahippocampal             91.9296     5.0574    78.0000   106.0000    28.0000 
    80. 

  80.  16 3017      3878     3941.1  wm-lh-paracentral                 96.9278     3.8311    83.0000   108.0000    25.0000 
    81. 

  81.  17 3018      3853     3936.4  wm-lh-parsopercularis            103.2048     4.7142    84.0000   114.0000    30.0000 
    82. 

  82.  18 3019       929      967.3  wm-lh-parsorbitalis              102.6103     4.8776    89.0000   114.0000    25.0000 
    83. 

  83.  19 3020      3791     3877.4  wm-lh-parstriangularis           104.8765     4.6680    88.0000   117.0000    29.0000 
    84. 

  84.  20 3021      3553     3481.2  wm-lh-pericalcarine               95.4979     6.7111    29.0000   108.0000    79.0000 
    85. 

  85.  21 3022      7844     8558.0  wm-lh-postcentral                103.5918     5.0344    87.0000   120.0000    33.0000 
    86. 

  86.  22 3023      4211     4218.1  wm-lh-posteriorcingulate          96.7689     6.4098    48.0000   110.0000    62.0000 
    87. 

  87.  23 3024     14248    14857.1  wm-lh-precentral                 101.1835     4.6145    57.0000   114.0000    57.0000 
    88. 

  88.  24 3025      9241     9461.4  wm-lh-precuneus                   99.4752     4.6603    60.0000   111.0000    51.0000 
    89. 

  89.  25 3026      3430     3351.9  wm-lh-rostralanteriorcingulate    98.2006     5.4328    70.0000   111.0000    41.0000 
    90. 

  90.  26 3027     15232    15786.7  wm-lh-rostralmiddlefrontal       102.5309     4.4386    86.0000   117.0000    31.0000 
    91. 

  91.  27 3028     19891    20442.4  wm-lh-superiorfrontal             98.1192     4.6404    79.0000   114.0000    35.0000 
    92. 

  92.  28 3029     11635    12284.1  wm-lh-superiorparietal           101.6217     3.8160    86.0000   113.0000    27.0000 
    93. 

  93.  29 3030      9350     9800.4  wm-lh-superiortemporal           100.7214     5.1134    80.0000   116.0000    36.0000 
    94. 

  94.  30 3031     10563    11000.1  wm-lh-supramarginal              106.3468     4.8131    85.0000   121.0000    36.0000 
    95. 

  95.  31 3032       324      352.1  wm-lh-frontalpole                101.5432     5.1547    87.0000   116.0000    29.0000 
    96. 

  96.  32 3033       684      792.2  wm-lh-temporalpole                91.6199     5.0385    78.0000   103.0000    25.0000 
    97. 

  97.  33 3034       771      786.0  wm-lh-transversetemporal          99.4747     4.1758    88.0000   111.0000    23.0000 
    98. 

  98.  34 3035     11462    11312.5  wm-lh-insula                      95.9483     6.1704    57.0000   112.0000    55.0000 
    99. 

  99.  35 4001      2673     2656.8  wm-rh-bankssts                   101.2866     4.0918    86.0000   112.0000    26.0000 
    100. 

  100.  36 4002      3070     3066.8  wm-rh-caudalanteriorcingulate     98.1205     5.7640    63.0000   110.0000    47.0000 
    101. 

  101.  37 4003      6613     6810.6  wm-rh-caudalmiddlefrontal        100.8833     4.1090    76.0000   113.0000    37.0000 
    102. 

  102.  38 4005      2799     2949.6  wm-rh-cuneus                      97.1593     4.8663    82.0000   110.0000    28.0000 
    103. 

  103.  39 4006      1233     1284.5  wm-rh-entorhinal                  92.4988     6.2683    63.0000   106.0000    43.0000 
    104. 

  104.  40 4007      6799     7003.5  wm-rh-fusiform                    94.8773     5.5025    31.0000   111.0000    80.0000 
    105. 

  105.  41 4008     10222    10796.5  wm-rh-inferiorparietal           103.3220     4.3817    77.0000   117.0000    40.0000 
    106. 

  106.  42 4009      7054     7383.8  wm-rh-inferiortemporal            99.1511     5.3135    78.0000   115.0000    37.0000 
    107. 

  107.  43 4010      4507     4608.5  wm-rh-isthmuscingulate            97.9186     5.6056    35.0000   110.0000    75.0000 
    108. 

  108.  44 4011     12743    13324.0  wm-rh-lateraloccipital            98.4999     5.6365    67.0000   114.0000    47.0000 
    109. 

  109.  45 4012      8053     8087.5  wm-rh-lateralorbitofrontal        95.9773     6.4969    68.0000   117.0000    49.0000 
    110. 

  110.  46 4013      4927     5172.3  wm-rh-lingual                     91.3619     8.5250    23.0000   107.0000    84.0000 
    111. 

  111.  47 4014      4309     4407.1  wm-rh-medialorbitofrontal         98.5435     7.0177    55.0000   118.0000    63.0000 
    112. 

  112.  48 4015      7176     7469.2  wm-rh-middletemporal             100.2942     5.1367    69.0000   113.0000    44.0000 
    113. 

  113.  49 4016      1465     1576.2  wm-rh-parahippocampal             91.7570     5.1443    66.0000   105.0000    39.0000 
    114. 

  114.  50 4017      5373     5498.5  wm-rh-paracentral                 95.3646     3.9114    81.0000   107.0000    26.0000 
    115. 

  115.  51 4018      3287     3355.4  wm-rh-parsopercularis            102.1150     4.7750    85.0000   115.0000    30.0000 
    116. 

  116.  52 4019      1378     1407.5  wm-rh-parsorbitalis               99.6959     4.7412    86.0000   112.0000    26.0000 
    117. 

  117.  53 4020      3130     3255.9  wm-rh-parstriangularis           102.2374     4.9407    84.0000   116.0000    32.0000 
    118. 

  118.  54 4021      3491     3548.4  wm-rh-pericalcarine               94.3721     5.2498    49.0000   110.0000    61.0000 
    119. 

  119.  55 4022      7999     8697.6  wm-rh-postcentral                101.2805     5.1642    84.0000   118.0000    34.0000 
    120. 

  120.  56 4023      4667     4697.3  wm-rh-posteriorcingulate          96.0411     5.5371    58.0000   108.0000    50.0000 
    121. 

  121.  57 4024     14653    15136.1  wm-rh-precentral                  99.4542     5.2273    48.0000   116.0000    68.0000 
    122. 

  122.  58 4025     10445    10660.0  wm-rh-precuneus                   98.0191     5.3039    27.0000   111.0000    84.0000 
    123. 

  123.  59 4026      1814     1784.4  wm-rh-rostralanteriorcingulate    98.0684     6.1367    51.0000   111.0000    60.0000 
    124. 

  124.  60 4027     16268    16923.1  wm-rh-rostralmiddlefrontal       102.3631     4.4551    82.0000   125.0000    43.0000 
    125. 

  125.  61 4028     19226    19964.6  wm-rh-superiorfrontal             99.8834     5.1244    74.0000   118.0000    44.0000 
    126. 

  126.  62 4029     12248    12969.7  wm-rh-superiorparietal           100.4277     3.9795    81.0000   112.0000    31.0000 
    127. 

  127.  63 4030      7232     7715.6  wm-rh-superiortemporal            99.8630     4.7418    83.0000   112.0000    29.0000 
    128. 

  128.  64 4031      9875    10227.6  wm-rh-supramarginal              103.6762     4.8354    82.0000   118.0000    36.0000 
    129. 

  129.  65 4032       306      334.7  wm-rh-frontalpole                104.3726     4.9600    92.0000   115.0000    23.0000 
    130. 

  130.  66 4033       796      884.5  wm-rh-temporalpole                93.2525     5.9508    77.0000   109.0000    32.0000 
    131. 

  131.  67 4034       757      758.7  wm-rh-transversetemporal         100.4505     4.0528    88.0000   111.0000    23.0000 
    132. 

  132.  68 4035     10784    10612.9  wm-rh-insula                      95.1852     6.0835    61.0000   111.0000    50.0000 
    133. 

  133.  69 5001     35867    35329.1  Left-UnsegmentedWhiteMatter       97.5640     7.8031    31.0000   114.0000    83.0000 
    134. 

  134.  70 5002     36000    35627.7  Right-UnsegmentedWhiteMatter      97.2476     7.8873    24.0000   116.0000    92.0000 
    135.