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ABIDE_fs-6.0.0
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0051484
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051484 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-959
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051484
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1317077.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1301816.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1301857.559138, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 11102.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 284754.932151, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 288223.013117, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 572977.945267, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 252206.789428, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 251687.824443, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 503894.613871, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 65301.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 770466.945267, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1157465.559138, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1146363.559138, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1142098.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1732055.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.774023, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.017898, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 89, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 89, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 178, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1701599.648687, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 01:56:38 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 16:49:35 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 16:49:35 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      4215     4506.0  Left-Lateral-Ventricle            41.5597    14.0931    16.0000    93.0000    77.0000 
    82. 

  82.   2   5       258      314.3  Left-Inf-Lat-Vent                 50.6589    13.2210    17.0000    79.0000    62.0000 
    83. 

  83.   3   7     14049    14699.5  Left-Cerebellum-White-Matter      85.2538     5.8433    26.0000   101.0000    75.0000 
    84. 

  84.   4   8     63632    63107.0  Left-Cerebellum-Cortex            72.4781     9.4851    26.0000   119.0000    93.0000 
    85. 

  85.   5  10      9221     8992.8  Left-Thalamus-Proper              87.3898     8.1572    36.0000   106.0000    70.0000 
    86. 

  86.   6  11      3939     3928.1  Left-Caudate                      81.5151     5.9829    55.0000   102.0000    47.0000 
    87. 

  87.   7  12      5816     5921.3  Left-Putamen                      88.0636     4.8750    57.0000   104.0000    47.0000 
    88. 

  88.   8  13      2392     2375.0  Left-Pallidum                     94.9289     4.7674    42.0000   115.0000    73.0000 
    89. 

  89.   9  14      1124     1090.9  3rd-Ventricle                     44.5783    15.2830    12.0000    92.0000    80.0000 
    90. 

  90.  10  15      1806     1927.5  4th-Ventricle                     37.2935    11.3537    16.0000    80.0000    64.0000 
    91. 

  91.  11  16     21915    21534.0  Brain-Stem                        83.2913    10.7161    10.0000   187.0000   177.0000 
    92. 

  92.  12  17      4581     4412.1  Left-Hippocampus                  74.5986     7.2969    31.0000   102.0000    71.0000 
    93. 

  93.  13  18      1783     1759.4  Left-Amygdala                     75.9933     5.9477    52.0000   101.0000    49.0000 
    94. 

  94.  14  24      1229     1208.1  CSF                               54.8405    13.4775    21.0000    90.0000    69.0000 
    95. 

  95.  15  26       399      412.6  Left-Accumbens-area               79.3434     3.8319    57.0000    92.0000    35.0000 
    96. 

  96.  16  28      4605     4408.4  Left-VentralDC                    88.8695     9.5729    34.0000   140.0000   106.0000 
    97. 

  97.  17  30        17       31.7  Left-vessel                       55.8824     9.7524    28.0000    70.0000    42.0000 
    98. 

  98.  18  31       333      302.5  Left-choroid-plexus               53.9850    12.7328    21.0000    84.0000    63.0000 
    99. 

  99.  19  43      5688     5841.6  Right-Lateral-Ventricle           39.3249    13.4321    14.0000    92.0000    78.0000 
    100. 

  100.  20  44       286      343.2  Right-Inf-Lat-Vent                45.7203    12.9517    19.0000    95.0000    76.0000 
    101. 

  101.  21  46     13421    13924.5  Right-Cerebellum-White-Matter     85.3920     5.7340    30.0000   103.0000    73.0000 
    102. 

  102.  22  47     66366    66230.6  Right-Cerebellum-Cortex           72.0423     9.3507    10.0000   123.0000   113.0000 
    103. 

  103.  23  49      9038     8749.8  Right-Thalamus-Proper             86.2522     8.0948    24.0000   117.0000    93.0000 
    104. 

  104.  24  50      3961     3953.7  Right-Caudate                     83.0879     5.9888    51.0000   103.0000    52.0000 
    105. 

  105.  25  51      5579     5652.4  Right-Putamen                     87.9661     5.3398    34.0000   103.0000    69.0000 
    106. 

  106.  26  52      2416     2375.1  Right-Pallidum                    94.3622     4.7207    53.0000   113.0000    60.0000 
    107. 

  107.  27  53      4501     4385.7  Right-Hippocampus                 74.4686     6.8420    38.0000   120.0000    82.0000 
    108. 

  108.  28  54      1983     1929.2  Right-Amygdala                    75.0877     6.4657    22.0000    94.0000    72.0000 
    109. 

  109.  29  58       486      471.9  Right-Accumbens-area              80.6852     4.2757    60.0000    95.0000    35.0000 
    110. 

  110.  30  60      4634     4398.1  Right-VentralDC                   89.0848    10.7964    30.0000   159.0000   129.0000 
    111. 

  111.  31  62         9       16.1  Right-vessel                      61.2222     7.2246    46.0000    71.0000    25.0000 
    112. 

  112.  32  63       406      373.6  Right-choroid-plexus              57.5911    12.6429    15.0000    84.0000    69.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       867      885.6  WM-hypointensities                71.5248    19.1845    22.0000   113.0000    91.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85        91       95.5  Optic-Chiasm                      81.7143    21.1183    36.0000   116.0000    80.0000 
    121. 

  121.  41 251       779      734.0  CC_Posterior                      94.8960    12.7781    41.0000   111.0000    70.0000 
    122. 

  122.  42 252       486      415.4  CC_Mid_Posterior                  89.1440    15.3425    40.0000   109.0000    69.0000 
    123. 

  123.  43 253       842      738.9  CC_Central                        87.0986    13.1969    37.0000   108.0000    71.0000 
    124. 

  124.  44 254       633      556.3  CC_Mid_Anterior                   89.0442    13.3864    47.0000   108.0000    61.0000 
    125. 

  125.  45 255      1054      966.0  CC_Anterior                       93.4535    13.3539    40.0000   137.0000    97.0000 
    126.