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0051481
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051481 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-935
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051481
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1285609.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1273648.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1273872.040511, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9089.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 256914.569718, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 259557.925107, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 516472.494825, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 266850.067175, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 261611.478511, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 528461.545686, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 69415.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 707952.494825, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1127099.040511, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1118010.040511, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1113972.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1753853.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.749385, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.022326, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 41, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 50, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 91, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1715552.043527, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 00:57:56 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 16:47:51 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 16:47:51 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      3854     4134.7  Left-Lateral-Ventricle            41.6450    12.6456    19.0000    87.0000    68.0000 
    82. 

  82.   2   5       150      210.6  Left-Inf-Lat-Vent                 49.6533     9.5264    25.0000    75.0000    50.0000 
    83. 

  83.   3   7     16161    16699.1  Left-Cerebellum-White-Matter      86.4568     5.6488    31.0000   100.0000    69.0000 
    84. 

  84.   4   8     62297    62036.1  Left-Cerebellum-Cortex            72.5043     8.8237    23.0000   105.0000    82.0000 
    85. 

  85.   5  10      9737     9554.0  Left-Thalamus-Proper              88.4333     6.9036    40.0000   107.0000    67.0000 
    86. 

  86.   6  11      4035     4067.6  Left-Caudate                      80.2463     5.5745    53.0000   101.0000    48.0000 
    87. 

  87.   7  12      5704     5758.4  Left-Putamen                      85.7134     5.3636    45.0000   105.0000    60.0000 
    88. 

  88.   8  13      2476     2435.6  Left-Pallidum                     93.5998     4.3582    62.0000   106.0000    44.0000 
    89. 

  89.   9  14       752      771.0  3rd-Ventricle                     47.6689    13.3318    11.0000    77.0000    66.0000 
    90. 

  90.  10  15      1129     1226.4  4th-Ventricle                     40.1373    11.7676    16.0000    78.0000    62.0000 
    91. 

  91.  11  16     26158    25894.4  Brain-Stem                        84.9560     8.5587    21.0000   122.0000   101.0000 
    92. 

  92.  12  17      4494     4409.6  Left-Hippocampus                  75.3705     7.5018    31.0000   105.0000    74.0000 
    93. 

  93.  13  18      2170     2087.6  Left-Amygdala                     72.0788     5.9198    31.0000    92.0000    61.0000 
    94. 

  94.  14  24       991      983.7  CSF                               56.3280    14.4319    20.0000   104.0000    84.0000 
    95. 

  95.  15  26       522      543.5  Left-Accumbens-area               74.6762     4.2594    51.0000    88.0000    37.0000 
    96. 

  96.  16  28      5633     5351.0  Left-VentralDC                    87.5031    10.1124    34.0000   118.0000    84.0000 
    97. 

  97.  17  30        19       32.3  Left-vessel                       58.5789    10.0627    37.0000    73.0000    36.0000 
    98. 

  98.  18  31       331      306.1  Left-choroid-plexus               54.1057    11.1270    27.0000    78.0000    51.0000 
    99. 

  99.  19  43      4263     4419.3  Right-Lateral-Ventricle           41.9625    13.4021    18.0000    88.0000    70.0000 
    100. 

  100.  20  44       131      166.1  Right-Inf-Lat-Vent                52.3817    12.8077    17.0000    78.0000    61.0000 
    101. 

  101.  21  46     21269    21195.4  Right-Cerebellum-White-Matter     83.8704     7.6794    32.0000   107.0000    75.0000 
    102. 

  102.  22  47     57745    57838.6  Right-Cerebellum-Cortex           70.8532     9.0231    17.0000   103.0000    86.0000 
    103. 

  103.  23  49      9890     9617.4  Right-Thalamus-Proper             87.7464     7.0336    43.0000   112.0000    69.0000 
    104. 

  104.  24  50      4133     4098.5  Right-Caudate                     82.8529     5.7035    53.0000   103.0000    50.0000 
    105. 

  105.  25  51      5760     5715.0  Right-Putamen                     85.7941     5.4354    51.0000   103.0000    52.0000 
    106. 

  106.  26  52      2284     2232.9  Right-Pallidum                    94.7128     4.3013    39.0000   108.0000    69.0000 
    107. 

  107.  27  53      4522     4383.4  Right-Hippocampus                 76.2848     7.1916    33.0000   104.0000    71.0000 
    108. 

  108.  28  54      2264     2183.3  Right-Amygdala                    73.3061     6.0662    26.0000    94.0000    68.0000 
    109. 

  109.  29  58       585      583.7  Right-Accumbens-area              77.4940     4.9397    52.0000    97.0000    45.0000 
    110. 

  110.  30  60      5249     4953.4  Right-VentralDC                   87.9392    10.0967    29.0000   112.0000    83.0000 
    111. 

  111.  31  62         9       17.6  Right-vessel                      64.7778     3.5277    58.0000    70.0000    12.0000 
    112. 

  112.  32  63       360      327.0  Right-choroid-plexus              55.7083    10.6128    24.0000    81.0000    57.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       696      799.6  WM-hypointensities                80.4368    14.8427    45.0000   118.0000    73.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       194      188.3  Optic-Chiasm                      73.5515    16.6730    31.0000   110.0000    79.0000 
    121. 

  121.  41 251      1055      984.0  CC_Posterior                      95.2436    13.4539    28.0000   114.0000    86.0000 
    122. 

  122.  42 252       621      552.0  CC_Mid_Posterior                  92.4058    13.5708    37.0000   109.0000    72.0000 
    123. 

  123.  43 253       865      815.4  CC_Central                        93.8358    10.0254    50.0000   117.0000    67.0000 
    124. 

  124.  44 254       846      754.0  CC_Mid_Anterior                   90.2411    13.6878    46.0000   108.0000    62.0000 
    125. 

  125.  45 255       977      918.8  CC_Anterior                       97.2579     9.4508    48.0000   115.0000    67.0000 
    126.