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reference-preprocessing
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ABIDE_fs-6.0.0
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ABIDE_fs-6.0.0
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0051371
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051371 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-596
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051371
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 22862.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 228645.604582, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 224473.096835, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 453118.701417, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1575771.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1499986.009385, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 03:05:13 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 17:27:39 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 17:27:39 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2953     2910.6  wm-lh-bankssts                   102.5523     9.1647    72.0000   136.0000    64.0000 
    66. 

  66.   2 3002      2552     2564.9  wm-lh-caudalanteriorcingulate    104.8981     8.8944    63.0000   132.0000    69.0000 
    67. 

  67.   3 3003      6531     6570.2  wm-lh-caudalmiddlefrontal         99.4863     9.0336    67.0000   130.0000    63.0000 
    68. 

  68.   4 3005      1837     1881.7  wm-lh-cuneus                      93.6162     9.6815    65.0000   122.0000    57.0000 
    69. 

  69.   5 3006       431      460.9  wm-lh-entorhinal                  82.4803     8.7196    60.0000   110.0000    50.0000 
    70. 

  70.   6 3007      7271     7299.5  wm-lh-fusiform                    94.8937    10.6862    56.0000   134.0000    78.0000 
    71. 

  71.   7 3008     11826    11973.2  wm-lh-inferiorparietal           102.6535     9.3088    68.0000   136.0000    68.0000 
    72. 

  72.   8 3009      5985     6085.6  wm-lh-inferiortemporal            92.1121    12.0814    44.0000   133.0000    89.0000 
    73. 

  73.   9 3010      3841     3845.6  wm-lh-isthmuscingulate            99.8787    11.3889    12.0000   129.0000   117.0000 
    74. 

  74.  10 3011      9889    10190.1  wm-lh-lateraloccipital            95.3259     9.9607    59.0000   126.0000    67.0000 
    75. 

  75.  11 3012      7265     7256.8  wm-lh-lateralorbitofrontal        98.3772    10.5154    64.0000   131.0000    67.0000 
    76. 

  76.  12 3013      4981     5022.3  wm-lh-lingual                     92.6457    10.9806    32.0000   128.0000    96.0000 
    77. 

  77.  13 3014      3449     3541.5  wm-lh-medialorbitofrontal         97.5665    12.7459    19.0000   133.0000   114.0000 
    78. 

  78.  14 3015      4705     4790.9  wm-lh-middletemporal              92.1736    11.6192    58.0000   133.0000    75.0000 
    79. 

  79.  15 3016      1117     1144.9  wm-lh-parahippocampal             92.4745    10.2944    51.0000   121.0000    70.0000 
    80. 

  80.  16 3017      4683     4710.4  wm-lh-paracentral                 98.5531     9.6144    69.0000   130.0000    61.0000 
    81. 

  81.  17 3018      2653     2687.5  wm-lh-parsopercularis             95.2955     8.8136    70.0000   121.0000    51.0000 
    82. 

  82.  18 3019      1337     1331.8  wm-lh-parsorbitalis               92.6799     9.4241    68.0000   119.0000    51.0000 
    83. 

  83.  19 3020      2493     2531.4  wm-lh-parstriangularis            97.5327     9.2206    71.0000   123.0000    52.0000 
    84. 

  84.  20 3021      2929     2845.3  wm-lh-pericalcarine               92.1973    10.6277    13.0000   127.0000   114.0000 
    85. 

  85.  21 3022      6176     6482.6  wm-lh-postcentral                 98.6556     9.4526    67.0000   135.0000    68.0000 
    86. 

  86.  22 3023      4752     4730.7  wm-lh-posteriorcingulate         101.4602    10.1791    41.0000   133.0000    92.0000 
    87. 

  87.  23 3024     13681    13927.9  wm-lh-precentral                  97.2171     9.1923    58.0000   131.0000    73.0000 
    88. 

  88.  24 3025      8138     8157.5  wm-lh-precuneus                   99.2243     9.7366    53.0000   135.0000    82.0000 
    89. 

  89.  25 3026      3095     3070.5  wm-lh-rostralanteriorcingulate   102.2439    12.9794    26.0000   140.0000   114.0000 
    90. 

  90.  26 3027     12760    12955.8  wm-lh-rostralmiddlefrontal        98.4835     9.3750    65.0000   129.0000    64.0000 
    91. 

  91.  27 3028     17215    17371.6  wm-lh-superiorfrontal             96.6590     9.8084    63.0000   132.0000    69.0000 
    92. 

  92.  28 3029     14258    14564.7  wm-lh-superiorparietal           100.1857     9.0763    59.0000   139.0000    80.0000 
    93. 

  93.  29 3030      7696     7877.7  wm-lh-superiortemporal            95.4491    11.2185    61.0000   135.0000    74.0000 
    94. 

  94.  30 3031      8208     8425.0  wm-lh-supramarginal              103.3882     9.6924    49.0000   141.0000    92.0000 
    95. 

  95.  31 3032       257      266.1  wm-lh-frontalpole                 93.9027     8.5432    75.0000   118.0000    43.0000 
    96. 

  96.  32 3033       544      607.2  wm-lh-temporalpole                79.2592     7.6122    55.0000   102.0000    47.0000 
    97. 

  97.  33 3034       686      701.4  wm-lh-transversetemporal          97.7434     8.7413    77.0000   127.0000    50.0000 
    98. 

  98.  34 3035     10149    10113.0  wm-lh-insula                      94.4594    11.6951    39.0000   134.0000    95.0000 
    99. 

  99.  35 4001      2729     2691.3  wm-rh-bankssts                    89.1796     7.1733    66.0000   115.0000    49.0000 
    100. 

  100.  36 4002      2588     2586.0  wm-rh-caudalanteriorcingulate    102.8277     9.5196    69.0000   133.0000    64.0000 
    101. 

  101.  37 4003      5069     5138.4  wm-rh-caudalmiddlefrontal         94.0592     8.6062    62.0000   123.0000    61.0000 
    102. 

  102.  38 4005      2077     2189.2  wm-rh-cuneus                      91.9957     7.9136    71.0000   117.0000    46.0000 
    103. 

  103.  39 4006       725      770.6  wm-rh-entorhinal                  82.0910     8.3224    57.0000   108.0000    51.0000 
    104. 

  104.  40 4007      6808     6852.3  wm-rh-fusiform                    84.5135     7.9332    52.0000   111.0000    59.0000 
    105. 

  105.  41 4008     10185    10390.5  wm-rh-inferiorparietal            88.7841     7.6709    62.0000   114.0000    52.0000 
    106. 

  106.  42 4009      5691     5935.1  wm-rh-inferiortemporal            84.0561     8.4450    58.0000   113.0000    55.0000 
    107. 

  107.  43 4010      3549     3586.1  wm-rh-isthmuscingulate            96.1815     9.2580    14.0000   125.0000   111.0000 
    108. 

  108.  44 4011     11225    11535.3  wm-rh-lateraloccipital            86.0677     7.7330    60.0000   115.0000    55.0000 
    109. 

  109.  45 4012      7359     7472.0  wm-rh-lateralorbitofrontal        97.8750    11.7784    14.0000   134.0000   120.0000 
    110. 

  110.  46 4013      5832     5968.4  wm-rh-lingual                     86.8892     8.5253    41.0000   119.0000    78.0000 
    111. 

  111.  47 4014      3614     3713.3  wm-rh-medialorbitofrontal        101.4126    11.6374    40.0000   127.0000    87.0000 
    112. 

  112.  48 4015      5568     5748.8  wm-rh-middletemporal              86.9177     7.9167    62.0000   120.0000    58.0000 
    113. 

  113.  49 4016      1578     1615.0  wm-rh-parahippocampal             83.9049     8.3086    61.0000   114.0000    53.0000 
    114. 

  114.  50 4017      5035     5037.1  wm-rh-paracentral                 93.7430     8.3079    60.0000   127.0000    67.0000 
    115. 

  115.  51 4018      2707     2718.6  wm-rh-parsopercularis             94.9837     9.0196    68.0000   127.0000    59.0000 
    116. 

  116.  52 4019      1431     1490.8  wm-rh-parsorbitalis               97.2061     8.5830    74.0000   121.0000    47.0000 
    117. 

  117.  53 4020      2937     2934.9  wm-rh-parstriangularis            95.3061     9.3166    69.0000   128.0000    59.0000 
    118. 

  118.  54 4021      3705     3625.4  wm-rh-pericalcarine               89.0267     8.1396    36.0000   118.0000    82.0000 
    119. 

  119.  55 4022      6971     7303.7  wm-rh-postcentral                 91.9211     8.5655    62.0000   125.0000    63.0000 
    120. 

  120.  56 4023      4266     4294.0  wm-rh-posteriorcingulate          98.1102     9.6424    52.0000   131.0000    79.0000 
    121. 

  121.  57 4024     13869    14088.3  wm-rh-precentral                  92.2299     8.5926    58.0000   121.0000    63.0000 
    122. 

  122.  58 4025      8142     8178.6  wm-rh-precuneus                   93.2434     8.0654    62.0000   129.0000    67.0000 
    123. 

  123.  59 4026      1623     1655.5  wm-rh-rostralanteriorcingulate   105.6938     9.6851    69.0000   133.0000    64.0000 
    124. 

  124.  60 4027     13619    13851.3  wm-rh-rostralmiddlefrontal        98.9960     9.8226    61.0000   134.0000    73.0000 
    125. 

  125.  61 4028     16255    16627.3  wm-rh-superiorfrontal             96.4906     9.6706    55.0000   129.0000    74.0000 
    126. 

  126.  62 4029     12946    13225.4  wm-rh-superiorparietal            91.5937     7.5719    59.0000   121.0000    62.0000 
    127. 

  127.  63 4030      5554     5783.1  wm-rh-superiortemporal            90.4719     8.1127    61.0000   117.0000    56.0000 
    128. 

  128.  64 4031      8329     8462.9  wm-rh-supramarginal               92.9842     7.7910    61.0000   123.0000    62.0000 
    129. 

  129.  65 4032       292      292.5  wm-rh-frontalpole                103.1541     8.8185    83.0000   127.0000    44.0000 
    130. 

  130.  66 4033       523      573.7  wm-rh-temporalpole                83.4493     8.3183    59.0000   109.0000    50.0000 
    131. 

  131.  67 4034       611      612.0  wm-rh-transversetemporal          91.4566     7.4314    63.0000   113.0000    50.0000 
    132. 

  132.  68 4035     10257    10264.8  wm-rh-insula                      89.9091    10.0595    30.0000   122.0000    92.0000 
    133. 

  133.  69 5001     31279    31089.5  Left-UnsegmentedWhiteMatter      100.1109    12.3612     1.0000   134.0000   133.0000 
    134. 

  134.  70 5002     29388    29213.3  Right-UnsegmentedWhiteMatter      95.4381    10.9377    14.0000   132.0000   118.0000 
    135.