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ABIDE_fs-6.0.0
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0051371
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051371 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-596
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051371
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1165544.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1138864.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1139395.632928, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 22862.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 246872.758514, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 247952.172996, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 494824.931510, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 228645.604582, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 224473.096835, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 453118.701417, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 58698.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 661058.931510, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1030941.632928, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1008079.632928, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1005994.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1575771.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.777037, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.050524, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 117, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 133, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 250, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1499986.009385, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 03:00:04 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:27:39 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:27:39 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     11631    11794.5  Left-Lateral-Ventricle            23.0084    13.9516     0.0000    84.0000    84.0000 
    82. 

  82.   2   5       244      273.0  Left-Inf-Lat-Vent                 40.4385    14.7475     8.0000    73.0000    65.0000 
    83. 

  83.   3   7     12693    13157.5  Left-Cerebellum-White-Matter      88.0889    10.6486    10.0000   125.0000   115.0000 
    84. 

  84.   4   8     52684    52454.6  Left-Cerebellum-Cortex            61.1573    15.4576     0.0000   154.0000   154.0000 
    85. 

  85.   5  10      7715     7596.7  Left-Thalamus-Proper              83.1548    13.0016     0.0000   122.0000   122.0000 
    86. 

  86.   6  11      3636     3607.2  Left-Caudate                      75.2610     9.9840    34.0000   115.0000    81.0000 
    87. 

  87.   7  12      5238     5160.8  Left-Putamen                      80.2484     9.6041    23.0000   109.0000    86.0000 
    88. 

  88.   8  13      2017     1990.7  Left-Pallidum                     93.8022     8.4226    52.0000   120.0000    68.0000 
    89. 

  89.   9  14       937      940.9  3rd-Ventricle                     31.5176    15.4432     0.0000    79.0000    79.0000 
    90. 

  90.  10  15      1899     2050.0  4th-Ventricle                     26.2070    12.3716     0.0000    71.0000    71.0000 
    91. 

  91.  11  16     20657    20593.0  Brain-Stem                        79.5693    11.9402     3.0000   119.0000   116.0000 
    92. 

  92.  12  17      3643     3506.2  Left-Hippocampus                  64.2847    11.0569     9.0000   104.0000    95.0000 
    93. 

  93.  13  18      1654     1575.4  Left-Amygdala                     61.8440     9.4405    33.0000    94.0000    61.0000 
    94. 

  94.  14  24       984      960.3  CSF                               40.0722    15.2422     1.0000    94.0000    93.0000 
    95. 

  95.  15  26       520      491.5  Left-Accumbens-area               69.9327     8.5404    41.0000    94.0000    53.0000 
    96. 

  96.  16  28      4150     4025.5  Left-VentralDC                    85.9851    12.8133    14.0000   123.0000   109.0000 
    97. 

  97.  17  30        19       31.6  Left-vessel                       51.7368    10.8875    35.0000    69.0000    34.0000 
    98. 

  98.  18  31       737      671.3  Left-choroid-plexus               46.0882    13.1879     7.0000    93.0000    86.0000 
    99. 

  99.  19  43      9269     9252.0  Right-Lateral-Ventricle           24.3682    14.5398     0.0000    95.0000    95.0000 
    100. 

  100.  20  44       347      378.6  Right-Inf-Lat-Vent                39.0317    14.0419     2.0000    74.0000    72.0000 
    101. 

  101.  21  46     12494    12887.3  Right-Cerebellum-White-Matter     82.0530     9.7522    20.0000   113.0000    93.0000 
    102. 

  102.  22  47     54475    54409.6  Right-Cerebellum-Cortex           58.3471    14.3297     0.0000   127.0000   127.0000 
    103. 

  103.  23  49      7750     7604.0  Right-Thalamus-Proper             80.4095    11.4004    21.0000   117.0000    96.0000 
    104. 

  104.  24  50      3793     3768.0  Right-Caudate                     74.8155     9.5441    37.0000   105.0000    68.0000 
    105. 

  105.  25  51      5176     5124.5  Right-Putamen                     77.2448     9.5742    22.0000   109.0000    87.0000 
    106. 

  106.  26  52      2028     1994.1  Right-Pallidum                    90.0217     8.4897    52.0000   117.0000    65.0000 
    107. 

  107.  27  53      4443     4253.9  Right-Hippocampus                 60.3689    11.2701     0.0000    98.0000    98.0000 
    108. 

  108.  28  54      2004     1941.0  Right-Amygdala                    62.3174    10.0964    22.0000   103.0000    81.0000 
    109. 

  109.  29  58       577      554.3  Right-Accumbens-area              69.8163     8.9633    40.0000   104.0000    64.0000 
    110. 

  110.  30  60      4392     4222.8  Right-VentralDC                   82.8755    12.2542    13.0000   120.0000   107.0000 
    111. 

  111.  31  62        12       19.0  Right-vessel                      58.7500     6.2395    46.0000    70.0000    24.0000 
    112. 

  112.  32  63       643      558.1  Right-choroid-plexus              48.5319    12.9556     6.0000    88.0000    82.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       738      723.2  WM-hypointensities                69.5271    10.5553    41.0000   118.0000    77.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       157      155.2  Optic-Chiasm                      78.6369    19.7942    11.0000   120.0000   109.0000 
    121. 

  121.  41 251      1159     1095.3  CC_Posterior                      95.9232    15.4504    31.0000   128.0000    97.0000 
    122. 

  122.  42 252       574      526.5  CC_Mid_Posterior                  93.1394    16.7009    18.0000   134.0000   116.0000 
    123. 

  123.  43 253       543      504.2  CC_Central                        95.4678    15.6019    31.0000   124.0000    93.0000 
    124. 

  124.  44 254       648      611.9  CC_Mid_Anterior                  100.8688    16.5323    30.0000   130.0000   100.0000 
    125. 

  125.  45 255      1200     1140.6  CC_Anterior                      102.6675    18.1550     2.0000   139.0000   137.0000 
    126.