| 12345678910111213141516171819202122232425262728293031323334353637383940414243444546474849505152535455565758596061626364656667686970717273747576777879808182838485868788899091929394959697989910010110210310410510610710810911011111211311411511611711811912012112212312412512612712812913013113213313413513613713813914014114214314414514614714814915015115215315415515615715815916016116216316416516616716816917017117217317417517617717817918018118218318418518618718818919019119219319419519619719819920020120220320420520620720820921021121221321421521621721821922022122222322422522622722822923023123223323423523623723823924024124224324424524624724824925025125225325425525625725825926026126226326426526626726826927027127227327427527627727827928028128228328428528628728828929029129229329429529629729829930030130230330430530630730830931031131231331431531631731831932032132232332432532632732832933033133233333433533633733833934034134234334434534634734834935035135235335435535635735835936036136236336436536636736836937037137237337437537637737837938038138238338438538638738838939039139239339439539639739839940040140240340440540640740840941041141241341441541641741841942042142242342442542642742842943043143243343443543643743843944044144244344444544644744844945045145245345445545645745845946046146246346446546646746846947047147247347447547647747847948048148248348448548648748848949049149249349449549649749849950050150250350450550650750850951051151251351451551651751851952052152252352452552652752852953053153253353453553653753853954054154254354454554654754854955055155255355455555655755855956056156256356456556656756856957057157257357457557657757857958058158258358458558658758858959059159259359459559659759859960060160260360460560660760860961061161261361461561661761861962062162262362462562662762862963063163263363463563663763863964064164264364464564664764864965065165265365465565665765865966066166266366466566666766866967067167267367467567667767867968068168268368468568668768868969069169269369469569669769869970070170270370470570670770870971071171271371471571671771871972072172272372472572672772872973073173273373473573673773873974074174274374474574674774874975075175275375475575675775875976076176276376476576676776876977077177277377477577677777877978078178278378478578678778878979079179279379479579679779879980080180280380480580680780880981081181281381481581681781881982082182282382482582682782882983083183283383483583683783883984084184284384484584684784884985085185285385485585685785885986086186286386486586686786886987087187287387487587687787887988088188288388488588688788888989089189289389489589689789889990090190290390490590690790890991091191291391491591691791891992092192292392492592692792892993093193293393493593693793893994094194294394494594694794894995095195295395495595695795895996096196296396496596696796896997097197297397497597697797897998098198298398498598698798898999099199299399499599699799899910001001100210031004100510061007100810091010101110121013101410151016101710181019102010211022102310241025102610271028102910301031103210331034103510361037103810391040104110421043104410451046104710481049105010511052105310541055105610571058105910601061106210631064106510661067106810691070107110721073107410751076107710781079108010811082108310841085108610871088108910901091109210931094109510961097109810991100110111021103110411051106110711081109111011111112111311141115111611171118111911201121112211231124112511261127112811291130113111321133113411351136113711381139114011411142114311441145114611471148114911501151115211531154115511561157115811591160116111621163116411651166116711681169117011711172117311741175117611771178117911801181118211831184118511861187118811891190119111921193119411951196119711981199120012011202120312041205120612071208120912101211121212131214121512161217121812191220122112221223122412251226122712281229123012311232123312341235123612371238123912401241124212431244124512461247124812491250125112521253125412551256125712581259126012611262126312641265126612671268126912701271127212731274127512761277127812791280128112821283128412851286128712881289129012911292129312941295129612971298129913001301130213031304130513061307130813091310131113121313131413151316131713181319132013211322132313241325132613271328132913301331133213331334133513361337133813391340134113421343134413451346134713481349135013511352135313541355135613571358135913601361136213631364136513661367136813691370137113721373137413751376137713781379138013811382138313841385138613871388138913901391139213931394139513961397139813991400140114021403140414051406140714081409141014111412141314141415141614171418141914201421142214231424142514261427142814291430143114321433143414351436143714381439144014411442144314441445144614471448144914501451145214531454145514561457145814591460146114621463146414651466146714681469147014711472147314741475147614771478147914801481148214831484148514861487148814891490149114921493149414951496149714981499150015011502150315041505150615071508150915101511151215131514151515161517151815191520152115221523152415251526152715281529153015311532153315341535153615371538153915401541154215431544154515461547154815491550155115521553155415551556155715581559156015611562156315641565156615671568156915701571157215731574157515761577157815791580158115821583158415851586158715881589159015911592159315941595159615971598159916001601160216031604160516061607160816091610161116121613161416151616161716181619162016211622162316241625162616271628162916301631163216331634163516361637163816391640164116421643164416451646164716481649165016511652165316541655165616571658165916601661166216631664166516661667166816691670167116721673167416751676167716781679168016811682168316841685168616871688168916901691169216931694169516961697169816991700170117021703170417051706170717081709171017111712171317141715171617171718171917201721172217231724172517261727172817291730173117321733173417351736173717381739174017411742174317441745174617471748174917501751175217531754175517561757175817591760176117621763176417651766176717681769177017711772177317741775177617771778177917801781178217831784178517861787178817891790179117921793179417951796179717981799180018011802180318041805180618071808180918101811181218131814181518161817181818191820182118221823182418251826182718281829183018311832183318341835183618371838183918401841184218431844184518461847184818491850185118521853185418551856185718581859186018611862186318641865186618671868186918701871187218731874187518761877187818791880188118821883188418851886188718881889189018911892189318941895189618971898189919001901190219031904190519061907190819091910191119121913191419151916191719181919192019211922192319241925192619271928192919301931193219331934193519361937193819391940194119421943194419451946194719481949195019511952195319541955195619571958195919601961196219631964196519661967196819691970197119721973197419751976197719781979198019811982198319841985198619871988198919901991199219931994199519961997199819992000200120022003200420052006200720082009201020112012201320142015201620172018201920202021202220232024202520262027202820292030203120322033203420352036203720382039204020412042204320442045204620472048204920502051205220532054205520562057205820592060206120622063206420652066206720682069207020712072207320742075207620772078207920802081208220832084208520862087208820892090209120922093209420952096209720982099210021012102210321042105210621072108210921102111211221132114211521162117211821192120212121222123212421252126212721282129213021312132213321342135213621372138213921402141214221432144214521462147214821492150215121522153215421552156215721582159216021612162216321642165216621672168216921702171217221732174217521762177217821792180218121822183218421852186218721882189219021912192219321942195219621972198219922002201220222032204220522062207220822092210221122122213221422152216221722182219222022212222222322242225222622272228222922302231223222332234223522362237223822392240224122422243224422452246224722482249225022512252225322542255225622572258225922602261226222632264226522662267226822692270227122722273227422752276227722782279228022812282228322842285228622872288228922902291229222932294229522962297229822992300230123022303230423052306230723082309231023112312231323142315231623172318231923202321232223232324232523262327232823292330233123322333233423352336233723382339234023412342234323442345234623472348234923502351235223532354235523562357235823592360236123622363236423652366236723682369237023712372237323742375237623772378237923802381238223832384238523862387238823892390239123922393239423952396239723982399240024012402240324042405240624072408240924102411241224132414241524162417241824192420242124222423242424252426242724282429243024312432243324342435243624372438243924402441244224432444244524462447244824492450245124522453245424552456245724582459246024612462246324642465246624672468246924702471247224732474247524762477247824792480248124822483248424852486248724882489249024912492249324942495249624972498249925002501250225032504250525062507250825092510251125122513251425152516251725182519252025212522252325242525252625272528252925302531253225332534253525362537253825392540254125422543254425452546254725482549255025512552255325542555255625572558255925602561256225632564256525662567256825692570257125722573257425752576257725782579258025812582258325842585258625872588258925902591259225932594259525962597259825992600260126022603260426052606260726082609261026112612261326142615261626172618261926202621262226232624262526262627262826292630263126322633263426352636263726382639264026412642264326442645264626472648264926502651265226532654265526562657265826592660266126622663266426652666266726682669267026712672267326742675267626772678267926802681268226832684268526862687268826892690269126922693269426952696269726982699270027012702270327042705270627072708270927102711271227132714271527162717271827192720272127222723272427252726272727282729273027312732273327342735273627372738273927402741274227432744274527462747274827492750275127522753275427552756275727582759276027612762276327642765276627672768276927702771277227732774277527762777277827792780278127822783278427852786278727882789279027912792279327942795279627972798279928002801280228032804280528062807280828092810281128122813281428152816281728182819282028212822282328242825282628272828282928302831283228332834283528362837283828392840284128422843284428452846284728482849285028512852285328542855285628572858285928602861286228632864286528662867286828692870287128722873287428752876287728782879288028812882288328842885288628872888288928902891289228932894289528962897289828992900290129022903290429052906290729082909291029112912291329142915291629172918291929202921292229232924292529262927292829292930293129322933293429352936293729382939294029412942294329442945294629472948294929502951295229532954295529562957295829592960296129622963296429652966296729682969297029712972297329742975297629772978297929802981298229832984298529862987298829892990299129922993299429952996299729982999300030013002300330043005300630073008300930103011301230133014301530163017301830193020302130223023302430253026302730283029303030313032303330343035303630373038303930403041304230433044304530463047304830493050305130523053305430553056305730583059306030613062306330643065306630673068306930703071307230733074307530763077307830793080308130823083308430853086308730883089309030913092309330943095309630973098309931003101310231033104310531063107310831093110311131123113311431153116311731183119312031213122312331243125312631273128312931303131313231333134313531363137313831393140314131423143314431453146314731483149315031513152315331543155315631573158315931603161316231633164316531663167316831693170317131723173317431753176317731783179318031813182318331843185318631873188318931903191319231933194319531963197319831993200320132023203320432053206320732083209321032113212321332143215321632173218321932203221322232233224322532263227322832293230323132323233323432353236323732383239324032413242324332443245324632473248324932503251325232533254325532563257325832593260326132623263326432653266326732683269327032713272327332743275327632773278327932803281328232833284328532863287328832893290329132923293329432953296329732983299330033013302330333043305330633073308330933103311331233133314331533163317331833193320332133223323332433253326332733283329333033313332333333343335333633373338333933403341334233433344334533463347334833493350335133523353335433553356335733583359336033613362336333643365336633673368336933703371337233733374337533763377337833793380338133823383338433853386338733883389339033913392339333943395339633973398339934003401340234033404340534063407340834093410341134123413341434153416341734183419342034213422342334243425342634273428342934303431343234333434343534363437343834393440344134423443344434453446344734483449345034513452345334543455345634573458345934603461346234633464346534663467346834693470347134723473347434753476347734783479348034813482348334843485348634873488348934903491349234933494349534963497349834993500350135023503350435053506350735083509351035113512351335143515351635173518351935203521352235233524352535263527352835293530353135323533353435353536353735383539354035413542354335443545354635473548354935503551355235533554355535563557355835593560356135623563356435653566356735683569357035713572357335743575357635773578357935803581358235833584358535863587358835893590359135923593359435953596359735983599360036013602360336043605360636073608360936103611361236133614361536163617361836193620362136223623362436253626362736283629363036313632363336343635363636373638363936403641364236433644364536463647364836493650365136523653365436553656365736583659366036613662366336643665366636673668366936703671367236733674367536763677367836793680368136823683368436853686368736883689369036913692369336943695369636973698369937003701370237033704370537063707370837093710371137123713371437153716371737183719372037213722372337243725372637273728372937303731373237333734373537363737373837393740374137423743374437453746374737483749375037513752375337543755375637573758375937603761376237633764376537663767376837693770377137723773377437753776377737783779378037813782378337843785378637873788378937903791379237933794379537963797379837993800380138023803380438053806380738083809381038113812381338143815381638173818381938203821382238233824382538263827382838293830383138323833383438353836383738383839384038413842384338443845384638473848384938503851385238533854385538563857385838593860386138623863386438653866386738683869387038713872387338743875387638773878387938803881388238833884388538863887388838893890389138923893389438953896389738983899390039013902390339043905390639073908390939103911391239133914391539163917391839193920392139223923392439253926392739283929393039313932393339343935393639373938393939403941394239433944394539463947394839493950395139523953395439553956395739583959396039613962396339643965396639673968396939703971397239733974397539763977397839793980398139823983398439853986398739883989399039913992399339943995399639973998399940004001400240034004400540064007400840094010401140124013401440154016401740184019402040214022402340244025402640274028402940304031403240334034403540364037403840394040404140424043404440454046404740484049405040514052405340544055405640574058405940604061406240634064406540664067406840694070407140724073407440754076407740784079408040814082408340844085408640874088408940904091409240934094409540964097409840994100410141024103410441054106410741084109411041114112411341144115411641174118411941204121412241234124412541264127412841294130413141324133413441354136413741384139414041414142414341444145414641474148414941504151415241534154415541564157415841594160416141624163416441654166416741684169417041714172417341744175417641774178417941804181418241834184418541864187418841894190419141924193419441954196419741984199420042014202420342044205420642074208420942104211421242134214421542164217421842194220422142224223422442254226422742284229423042314232423342344235423642374238423942404241424242434244424542464247424842494250425142524253425442554256425742584259426042614262426342644265426642674268426942704271427242734274427542764277427842794280428142824283428442854286428742884289429042914292429342944295429642974298429943004301430243034304430543064307430843094310431143124313431443154316431743184319432043214322432343244325432643274328432943304331433243334334433543364337433843394340434143424343434443454346434743484349435043514352435343544355435643574358435943604361436243634364436543664367436843694370437143724373437443754376437743784379438043814382438343844385438643874388438943904391439243934394439543964397439843994400440144024403440444054406440744084409441044114412441344144415441644174418441944204421442244234424442544264427442844294430443144324433443444354436443744384439444044414442444344444445444644474448444944504451445244534454445544564457445844594460446144624463446444654466446744684469447044714472447344744475447644774478447944804481448244834484448544864487448844894490449144924493449444954496449744984499450045014502450345044505450645074508450945104511451245134514451545164517451845194520452145224523452445254526452745284529453045314532453345344535453645374538453945404541454245434544454545464547454845494550455145524553455445554556455745584559456045614562456345644565456645674568456945704571457245734574457545764577457845794580458145824583458445854586458745884589459045914592459345944595459645974598459946004601460246034604460546064607460846094610461146124613461446154616461746184619462046214622462346244625462646274628462946304631463246334634463546364637463846394640464146424643464446454646464746484649465046514652465346544655465646574658465946604661466246634664466546664667466846694670467146724673467446754676467746784679468046814682468346844685468646874688468946904691469246934694469546964697469846994700470147024703470447054706470747084709471047114712471347144715471647174718471947204721472247234724472547264727472847294730473147324733473447354736473747384739474047414742474347444745474647474748474947504751475247534754475547564757475847594760476147624763476447654766476747684769477047714772477347744775477647774778477947804781478247834784478547864787478847894790479147924793479447954796479747984799480048014802480348044805480648074808480948104811481248134814481548164817481848194820482148224823482448254826482748284829483048314832483348344835483648374838483948404841484248434844484548464847484848494850485148524853485448554856485748584859486048614862486348644865486648674868486948704871487248734874487548764877487848794880488148824883488448854886488748884889489048914892489348944895489648974898489949004901490249034904490549064907490849094910491149124913491449154916491749184919492049214922492349244925492649274928492949304931493249334934493549364937493849394940494149424943494449454946494749484949495049514952495349544955495649574958495949604961496249634964496549664967496849694970497149724973497449754976497749784979498049814982498349844985498649874988498949904991499249934994499549964997499849995000500150025003500450055006500750085009501050115012501350145015501650175018501950205021502250235024502550265027502850295030503150325033503450355036503750385039504050415042504350445045504650475048504950505051505250535054505550565057505850595060506150625063506450655066506750685069507050715072507350745075507650775078507950805081508250835084508550865087508850895090509150925093509450955096509750985099510051015102510351045105510651075108510951105111511251135114511551165117511851195120512151225123512451255126512751285129513051315132513351345135513651375138513951405141514251435144514551465147514851495150515151525153515451555156515751585159516051615162516351645165516651675168516951705171517251735174517551765177517851795180518151825183518451855186518751885189519051915192519351945195519651975198519952005201520252035204520552065207520852095210521152125213521452155216521752185219522052215222522352245225522652275228522952305231523252335234523552365237523852395240524152425243524452455246524752485249525052515252525352545255525652575258525952605261526252635264526552665267526852695270527152725273527452755276527752785279528052815282528352845285528652875288528952905291529252935294529552965297529852995300530153025303530453055306530753085309531053115312531353145315531653175318531953205321532253235324532553265327532853295330533153325333533453355336533753385339534053415342534353445345534653475348534953505351535253535354535553565357535853595360536153625363536453655366536753685369537053715372537353745375537653775378537953805381538253835384538553865387538853895390539153925393539453955396539753985399540054015402540354045405540654075408540954105411541254135414541554165417541854195420542154225423542454255426542754285429543054315432543354345435543654375438543954405441544254435444544554465447544854495450545154525453545454555456545754585459546054615462546354645465546654675468546954705471547254735474547554765477547854795480548154825483548454855486548754885489549054915492549354945495549654975498549955005501550255035504550555065507550855095510551155125513551455155516551755185519552055215522552355245525552655275528552955305531553255335534553555365537553855395540554155425543554455455546554755485549555055515552555355545555555655575558555955605561556255635564556555665567556855695570557155725573557455755576557755785579558055815582558355845585558655875588558955905591559255935594559555965597559855995600560156025603560456055606560756085609561056115612561356145615561656175618561956205621562256235624562556265627562856295630563156325633563456355636563756385639564056415642564356445645564656475648564956505651565256535654565556565657565856595660566156625663566456655666566756685669567056715672567356745675567656775678567956805681568256835684568556865687568856895690569156925693569456955696569756985699570057015702570357045705570657075708570957105711571257135714571557165717571857195720572157225723572457255726572757285729573057315732573357345735573657375738573957405741574257435744574557465747574857495750575157525753575457555756575757585759576057615762576357645765576657675768576957705771577257735774577557765777577857795780578157825783578457855786578757885789579057915792579357945795579657975798579958005801580258035804580558065807580858095810581158125813581458155816581758185819582058215822582358245825582658275828582958305831583258335834583558365837583858395840584158425843584458455846584758485849585058515852585358545855585658575858585958605861586258635864586558665867586858695870587158725873587458755876587758785879588058815882588358845885588658875888588958905891589258935894589558965897589858995900590159025903590459055906590759085909591059115912591359145915591659175918591959205921592259235924592559265927592859295930593159325933593459355936593759385939594059415942594359445945594659475948594959505951595259535954595559565957595859595960596159625963596459655966596759685969597059715972597359745975597659775978597959805981598259835984598559865987598859895990599159925993599459955996599759985999600060016002600360046005600660076008600960106011601260136014601560166017601860196020602160226023602460256026602760286029603060316032603360346035603660376038603960406041604260436044604560466047604860496050605160526053605460556056605760586059606060616062606360646065606660676068606960706071607260736074607560766077607860796080608160826083608460856086608760886089609060916092609360946095609660976098609961006101610261036104610561066107610861096110611161126113611461156116611761186119612061216122612361246125612661276128612961306131613261336134613561366137613861396140614161426143614461456146614761486149615061516152615361546155615661576158615961606161616261636164616561666167616861696170617161726173617461756176617761786179618061816182618361846185618661876188618961906191619261936194619561966197619861996200620162026203620462056206620762086209621062116212621362146215621662176218621962206221622262236224622562266227622862296230623162326233623462356236623762386239624062416242624362446245624662476248624962506251625262536254625562566257625862596260626162626263626462656266626762686269627062716272627362746275627662776278627962806281628262836284628562866287628862896290629162926293629462956296629762986299630063016302630363046305630663076308630963106311631263136314631563166317631863196320632163226323632463256326632763286329633063316332633363346335633663376338633963406341634263436344634563466347634863496350635163526353635463556356635763586359636063616362636363646365636663676368636963706371637263736374637563766377637863796380638163826383638463856386638763886389639063916392639363946395639663976398639964006401640264036404640564066407640864096410641164126413641464156416641764186419642064216422642364246425642664276428642964306431643264336434643564366437643864396440644164426443644464456446644764486449645064516452645364546455645664576458645964606461646264636464646564666467646864696470647164726473647464756476647764786479648064816482648364846485648664876488648964906491649264936494649564966497649864996500650165026503650465056506650765086509651065116512651365146515651665176518651965206521652265236524652565266527652865296530653165326533653465356536653765386539654065416542654365446545654665476548654965506551655265536554655565566557655865596560656165626563656465656566656765686569657065716572657365746575657665776578657965806581658265836584658565866587658865896590659165926593659465956596659765986599660066016602660366046605660666076608660966106611661266136614661566166617661866196620662166226623662466256626662766286629663066316632663366346635663666376638663966406641664266436644664566466647664866496650665166526653665466556656665766586659666066616662666366646665666666676668666966706671667266736674667566766677667866796680668166826683668466856686668766886689669066916692669366946695669666976698669967006701670267036704670567066707670867096710671167126713671467156716671767186719672067216722672367246725672667276728672967306731673267336734673567366737673867396740674167426743674467456746674767486749675067516752675367546755675667576758675967606761676267636764676567666767676867696770677167726773677467756776677767786779678067816782678367846785678667876788678967906791679267936794679567966797679867996800680168026803680468056806680768086809681068116812681368146815681668176818681968206821682268236824682568266827682868296830683168326833683468356836683768386839684068416842684368446845684668476848684968506851685268536854685568566857685868596860686168626863686468656866686768686869687068716872687368746875687668776878687968806881688268836884688568866887688868896890689168926893689468956896689768986899690069016902690369046905690669076908690969106911691269136914691569166917691869196920692169226923692469256926692769286929693069316932693369346935693669376938693969406941694269436944694569466947694869496950695169526953695469556956695769586959696069616962696369646965696669676968696969706971697269736974697569766977697869796980698169826983698469856986698769886989699069916992699369946995699669976998699970007001700270037004700570067007700870097010701170127013701470157016701770187019702070217022702370247025702670277028702970307031703270337034703570367037703870397040704170427043704470457046704770487049705070517052705370547055705670577058705970607061706270637064706570667067706870697070707170727073707470757076707770787079708070817082708370847085708670877088708970907091709270937094709570967097709870997100710171027103710471057106710771087109711071117112711371147115711671177118711971207121712271237124712571267127712871297130713171327133713471357136713771387139714071417142714371447145714671477148714971507151715271537154715571567157715871597160716171627163716471657166716771687169717071717172717371747175717671777178717971807181718271837184718571867187718871897190719171927193719471957196719771987199720072017202720372047205720672077208720972107211721272137214721572167217721872197220722172227223722472257226722772287229723072317232723372347235723672377238723972407241724272437244724572467247724872497250725172527253725472557256725772587259726072617262726372647265726672677268726972707271727272737274727572767277727872797280728172827283728472857286728772887289729072917292729372947295729672977298729973007301730273037304730573067307730873097310731173127313731473157316731773187319732073217322732373247325732673277328732973307331733273337334733573367337733873397340734173427343734473457346734773487349735073517352735373547355735673577358735973607361736273637364736573667367736873697370737173727373737473757376737773787379738073817382738373847385738673877388738973907391739273937394739573967397739873997400740174027403740474057406740774087409741074117412741374147415741674177418741974207421742274237424742574267427742874297430743174327433743474357436743774387439744074417442744374447445744674477448744974507451745274537454745574567457745874597460746174627463746474657466746774687469747074717472747374747475747674777478747974807481748274837484748574867487748874897490749174927493749474957496749774987499750075017502750375047505750675077508750975107511751275137514751575167517751875197520752175227523752475257526752775287529753075317532753375347535753675377538753975407541754275437544754575467547754875497550755175527553755475557556755775587559756075617562756375647565756675677568756975707571757275737574757575767577757875797580758175827583758475857586758775887589759075917592759375947595759675977598759976007601760276037604760576067607760876097610761176127613761476157616761776187619762076217622762376247625762676277628762976307631763276337634763576367637763876397640764176427643764476457646764776487649765076517652765376547655765676577658765976607661766276637664766576667667766876697670767176727673767476757676767776787679768076817682768376847685768676877688768976907691769276937694769576967697769876997700770177027703770477057706770777087709771077117712771377147715771677177718771977207721772277237724772577267727772877297730773177327733773477357736773777387739774077417742774377447745774677477748774977507751775277537754775577567757775877597760776177627763776477657766776777687769777077717772777377747775777677777778777977807781778277837784778577867787778877897790779177927793779477957796779777987799780078017802780378047805780678077808780978107811781278137814781578167817781878197820782178227823782478257826782778287829783078317832783378347835783678377838783978407841784278437844784578467847784878497850785178527853785478557856785778587859786078617862786378647865786678677868786978707871787278737874787578767877787878797880788178827883788478857886788778887889789078917892789378947895789678977898789979007901790279037904790579067907790879097910791179127913791479157916791779187919792079217922792379247925792679277928792979307931793279337934793579367937793879397940794179427943794479457946794779487949795079517952795379547955795679577958795979607961796279637964796579667967796879697970797179727973797479757976797779787979798079817982798379847985798679877988798979907991799279937994799579967997799879998000800180028003800480058006800780088009801080118012801380148015801680178018801980208021802280238024802580268027802880298030803180328033803480358036803780388039804080418042804380448045804680478048804980508051805280538054805580568057805880598060806180628063806480658066806780688069807080718072807380748075807680778078807980808081808280838084808580868087808880898090809180928093809480958096809780988099810081018102810381048105810681078108810981108111811281138114811581168117811881198120812181228123812481258126812781288129813081318132813381348135813681378138813981408141814281438144814581468147814881498150815181528153815481558156815781588159816081618162816381648165816681678168816981708171817281738174817581768177817881798180818181828183818481858186818781888189819081918192819381948195819681978198819982008201820282038204820582068207820882098210821182128213821482158216821782188219822082218222822382248225822682278228822982308231823282338234823582368237823882398240824182428243824482458246824782488249825082518252825382548255825682578258825982608261826282638264826582668267826882698270827182728273827482758276827782788279828082818282828382848285828682878288828982908291829282938294829582968297829882998300830183028303830483058306830783088309831083118312831383148315831683178318831983208321832283238324832583268327832883298330833183328333833483358336833783388339834083418342834383448345834683478348834983508351835283538354835583568357835883598360836183628363836483658366836783688369837083718372837383748375837683778378837983808381838283838384838583868387838883898390839183928393839483958396839783988399840084018402840384048405840684078408840984108411841284138414841584168417841884198420842184228423842484258426842784288429843084318432843384348435843684378438843984408441844284438444844584468447844884498450845184528453845484558456845784588459846084618462846384648465846684678468846984708471847284738474847584768477847884798480848184828483848484858486848784888489849084918492849384948495849684978498849985008501850285038504850585068507850885098510851185128513851485158516851785188519852085218522852385248525852685278528852985308531853285338534853585368537853885398540854185428543854485458546854785488549855085518552855385548555855685578558855985608561856285638564856585668567856885698570857185728573857485758576857785788579858085818582858385848585858685878588858985908591859285938594859585968597859885998600860186028603860486058606860786088609861086118612861386148615861686178618861986208621862286238624862586268627862886298630863186328633863486358636863786388639864086418642864386448645864686478648864986508651865286538654865586568657865886598660866186628663866486658666866786688669867086718672867386748675867686778678867986808681868286838684868586868687868886898690869186928693869486958696869786988699870087018702870387048705870687078708870987108711871287138714871587168717871887198720872187228723872487258726872787288729873087318732873387348735873687378738873987408741874287438744874587468747874887498750875187528753875487558756875787588759876087618762876387648765876687678768876987708771877287738774877587768777877887798780878187828783878487858786878787888789879087918792879387948795879687978798879988008801880288038804880588068807880888098810881188128813881488158816881788188819882088218822882388248825882688278828882988308831883288338834883588368837883888398840884188428843884488458846884788488849885088518852885388548855885688578858885988608861886288638864886588668867886888698870887188728873887488758876887788788879888088818882888388848885888688878888888988908891889288938894889588968897889888998900890189028903890489058906890789088909891089118912891389148915891689178918891989208921892289238924892589268927892889298930893189328933893489358936893789388939894089418942894389448945894689478948894989508951895289538954895589568957895889598960896189628963896489658966896789688969897089718972897389748975897689778978897989808981898289838984898589868987898889898990899189928993899489958996899789988999900090019002900390049005900690079008900990109011901290139014901590169017901890199020902190229023902490259026902790289029903090319032903390349035903690379038903990409041904290439044904590469047904890499050905190529053905490559056905790589059906090619062906390649065906690679068906990709071907290739074907590769077907890799080908190829083908490859086908790889089909090919092909390949095909690979098909991009101910291039104910591069107910891099110911191129113911491159116911791189119912091219122912391249125912691279128912991309131913291339134913591369137913891399140914191429143914491459146914791489149915091519152915391549155915691579158915991609161916291639164916591669167916891699170917191729173917491759176917791789179918091819182918391849185918691879188918991909191919291939194919591969197919891999200920192029203920492059206920792089209921092119212921392149215921692179218921992209221922292239224922592269227922892299230923192329233923492359236923792389239924092419242924392449245924692479248924992509251925292539254925592569257925892599260926192629263926492659266926792689269927092719272927392749275927692779278927992809281928292839284928592869287928892899290929192929293929492959296929792989299930093019302930393049305930693079308930993109311931293139314931593169317931893199320932193229323932493259326932793289329933093319332933393349335933693379338933993409341934293439344934593469347934893499350935193529353935493559356935793589359936093619362936393649365936693679368936993709371937293739374937593769377937893799380938193829383938493859386938793889389939093919392939393949395939693979398939994009401940294039404940594069407940894099410941194129413941494159416941794189419942094219422942394249425942694279428942994309431943294339434943594369437943894399440944194429443944494459446944794489449945094519452945394549455945694579458945994609461946294639464946594669467946894699470947194729473947494759476947794789479948094819482948394849485948694879488948994909491949294939494949594969497949894999500950195029503950495059506950795089509951095119512951395149515951695179518951995209521952295239524952595269527952895299530953195329533953495359536953795389539954095419542954395449545954695479548954995509551955295539554955595569557955895599560956195629563956495659566956795689569957095719572957395749575957695779578957995809581958295839584958595869587958895899590959195929593959495959596959795989599960096019602960396049605960696079608960996109611961296139614961596169617961896199620962196229623962496259626962796289629963096319632963396349635963696379638963996409641964296439644964596469647964896499650965196529653965496559656965796589659966096619662966396649665966696679668966996709671967296739674967596769677967896799680968196829683968496859686968796889689969096919692969396949695969696979698969997009701970297039704970597069707970897099710971197129713971497159716971797189719972097219722972397249725972697279728972997309731973297339734973597369737973897399740974197429743974497459746974797489749975097519752975397549755975697579758975997609761976297639764976597669767976897699770977197729773977497759776977797789779978097819782978397849785978697879788978997909791979297939794979597969797979897999800980198029803980498059806980798089809981098119812981398149815981698179818981998209821982298239824982598269827982898299830983198329833983498359836983798389839984098419842984398449845984698479848984998509851985298539854985598569857985898599860986198629863986498659866986798689869987098719872987398749875987698779878987998809881988298839884988598869887988898899890989198929893989498959896989798989899990099019902990399049905990699079908990999109911991299139914991599169917991899199920992199229923992499259926992799289929993099319932993399349935993699379938993999409941994299439944994599469947994899499950995199529953995499559956995799589959996099619962996399649965996699679968996999709971997299739974997599769977997899799980998199829983998499859986998799889989999099919992999399949995999699979998999910000100011000210003100041000510006100071000810009100101001110012100131001410015100161001710018100191002010021100221002310024100251002610027100281002910030100311003210033100341003510036100371003810039100401004110042100431004410045100461004710048100491005010051100521005310054100551005610057100581005910060100611006210063100641006510066100671006810069100701007110072100731007410075100761007710078100791008010081100821008310084100851008610087100881008910090100911009210093100941009510096100971009810099101001010110102101031010410105101061010710108101091011010111101121011310114101151011610117101181011910120101211012210123101241012510126101271012810129101301013110132101331013410135101361013710138101391014010141101421014310144101451014610147101481014910150101511015210153101541015510156101571015810159101601016110162101631016410165101661016710168101691017010171101721017310174101751017610177101781017910180101811018210183101841018510186101871018810189101901019110192101931019410195101961019710198101991020010201102021020310204102051020610207102081020910210102111021210213102141021510216102171021810219102201022110222102231022410225102261022710228102291023010231102321023310234102351023610237102381023910240102411024210243102441024510246102471024810249102501025110252102531025410255102561025710258102591026010261102621026310264102651026610267102681026910270102711027210273102741027510276102771027810279102801028110282102831028410285102861028710288102891029010291102921029310294102951029610297102981029910300103011030210303103041030510306103071030810309103101031110312103131031410315103161031710318103191032010321103221032310324103251032610327103281032910330103311033210333103341033510336103371033810339103401034110342103431034410345103461034710348103491035010351103521035310354103551035610357103581035910360103611036210363103641036510366103671036810369103701037110372103731037410375103761037710378103791038010381103821038310384103851038610387103881038910390103911039210393103941039510396103971039810399104001040110402104031040410405104061040710408104091041010411104121041310414104151041610417104181041910420104211042210423104241042510426104271042810429104301043110432104331043410435104361043710438104391044010441104421044310444104451044610447104481044910450104511045210453104541045510456104571045810459104601046110462104631046410465104661046710468104691047010471104721047310474104751047610477104781047910480104811048210483104841048510486104871048810489104901049110492104931049410495104961049710498104991050010501105021050310504105051050610507105081050910510105111051210513105141051510516105171051810519105201052110522105231052410525105261052710528105291053010531105321053310534105351053610537105381053910540105411054210543105441054510546105471054810549105501055110552105531055410555105561055710558105591056010561105621056310564105651056610567105681056910570105711057210573105741057510576105771057810579105801058110582105831058410585105861058710588105891059010591105921059310594105951059610597105981059910600106011060210603106041060510606106071060810609106101061110612106131061410615106161061710618106191062010621106221062310624106251062610627106281062910630106311063210633106341063510636106371063810639106401064110642106431064410645106461064710648106491065010651106521065310654106551065610657106581065910660106611066210663106641066510666106671066810669106701067110672106731067410675106761067710678106791068010681106821068310684106851068610687106881068910690106911069210693106941069510696106971069810699107001070110702107031070410705107061070710708107091071010711107121071310714107151071610717107181071910720107211072210723107241072510726107271072810729107301073110732107331073410735107361073710738107391074010741107421074310744107451074610747107481074910750107511075210753107541075510756107571075810759107601076110762107631076410765107661076710768107691077010771107721077310774107751077610777107781077910780107811078210783107841078510786107871078810789107901079110792107931079410795107961079710798107991080010801108021080310804108051080610807108081080910810108111081210813108141081510816108171081810819108201082110822108231082410825108261082710828108291083010831108321083310834108351083610837108381083910840108411084210843108441084510846108471084810849108501085110852108531085410855108561085710858108591086010861108621086310864108651086610867108681086910870108711087210873108741087510876108771087810879108801088110882108831088410885108861088710888108891089010891108921089310894108951089610897108981089910900109011090210903109041090510906109071090810909109101091110912109131091410915 |
- Sat Oct 7 16:52:35 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/recon-all
- -subjid 0051366 -sd fs-6.0.0 -i /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/MaxMun_a/0051366/session_1/anat_1/mprage.nii.gz -autorecon-all -parallel -openmp 2
- subjid 0051366
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Actual FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- Linux tars-963 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- cputime unlimited
- filesize unlimited
- datasize unlimited
- stacksize 10240 kbytes
- coredumpsize 0 kbytes
- memoryuse 10485760 kbytes
- vmemoryuse unlimited
- descriptors 65536
- memorylocked 64 kbytes
- maxproc 1024
- total used free shared buffers cached
- Mem: 66074836 58347384 7727452 1765592 0 55703340
- -/+ buffers/cache: 2644044 63430792
- Swap: 0 0 0
- ########################################
- program versions used
- $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $
- $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $
- mri_convert.bin -all-info
- ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- FLIRT version 5.5
- $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $
- mri_convert.bin --version
- stable6
- ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
- ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
- ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:52:35-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: ntraut Machine: tars-963 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- #######################################
- GCADIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCA RB_all_2016-05-10.vc700.gca
- GCASkull RB_all_withskull_2016-05-10.vc700.gca
- AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
- GCSDIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
- #######################################
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/MaxMun_a/0051366/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig/001.mgz
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/MaxMun_a/0051366/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig/001.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/MaxMun_a/0051366/session_1/anat_1/mprage.nii.gz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -0, 0)
- j_ras = (-0, 1, 0)
- k_ras = (-0, -0, 1)
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig/001.mgz...
- #--------------------------------------------
- #@# MotionCor Sat Oct 7 16:52:38 CEST 2017
- Found 1 runs
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig/001.mgz
- Checking for (invalid) multi-frame inputs...
- WARNING: only one run found. This is OK, but motion
- correction cannot be performed on one run, so I'll
- copy the run to rawavg and continue.
- cp /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig/001.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz --conform
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -0, 0)
- j_ras = (-0, 1, 0)
- k_ras = (-0, -0, 1)
- changing data type from short to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- Reslicing using trilinear interpolation
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz...
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/transforms/talairach.xfm /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Talairach Sat Oct 7 16:52:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- nIters 1
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-963 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 16:52:47 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.7626
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.7626/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.7626/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.7626/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 16:52:49 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.7626/nu0.mnc ./tmp.mri_nu_correct.mni.7626/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.7626/0/ -iterations 1000 -distance 50
- [ntraut@tars-963:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/] [2017-10-07 16:52:49] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.7626/0/ ./tmp.mri_nu_correct.mni.7626/nu0.mnc ./tmp.mri_nu_correct.mni.7626/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 46
- CV of field change: 0.000978439
-
-
-
- mri_convert ./tmp.mri_nu_correct.mni.7626/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- mri_convert.bin ./tmp.mri_nu_correct.mni.7626/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.7626/nu1.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- INFO: transform src into the like-volume: orig.mgz
- changing data type from float to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- writing to orig_nu.mgz...
-
-
- Sat Oct 7 16:54:01 CEST 2017
- mri_nu_correct.mni done
- talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm
- talairach_avi log file is transforms/talairach_avi.log...
- Started at Sat Oct 7 16:54:01 CEST 2017
- Ended at Sat Oct 7 16:54:37 CEST 2017
- talairach_avi done
- cp transforms/talairach.auto.xfm transforms/talairach.xfm
- #--------------------------------------------
- #@# Talairach Failure Detection Sat Oct 7 16:54:39 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- talairach_afd -T 0.005 -xfm transforms/talairach.xfm
- talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.7061, pval=0.4932 >= threshold=0.0050)
- awk -f /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/extract_talairach_avi_QA.awk /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/transforms/talairach_avi.log
- tal_QC_AZS /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/transforms/talairach_avi.log
- TalAviQA: 0.98218
- z-score: 0
- #--------------------------------------------
- #@# Nu Intensity Correction Sat Oct 7 16:54:39 CEST 2017
- mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- nIters 2
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-963 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 16:54:39 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.8467
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.8467/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.8467/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.8467/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 16:54:41 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.8467/nu0.mnc ./tmp.mri_nu_correct.mni.8467/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.8467/0/
- [ntraut@tars-963:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/] [2017-10-07 16:54:41] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.8467/0/ ./tmp.mri_nu_correct.mni.8467/nu0.mnc ./tmp.mri_nu_correct.mni.8467/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 45
- CV of field change: 0.000986704
-
-
- --------------------------------------------------------
- Iteration 2 Sat Oct 7 16:55:32 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.8467/nu1.mnc ./tmp.mri_nu_correct.mni.8467/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.8467/1/
- [ntraut@tars-963:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/] [2017-10-07 16:55:32] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.8467/1/ ./tmp.mri_nu_correct.mni.8467/nu1.mnc ./tmp.mri_nu_correct.mni.8467/nu2.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 16
- CV of field change: 0.000948601
-
-
-
- mri_binarize --i ./tmp.mri_nu_correct.mni.8467/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.8467/ones.mgz
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.8467/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.8467/ones.mgz
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- input ./tmp.mri_nu_correct.mni.8467/nu2.mnc
- frame 0
- nErode3d 0
- nErode2d 0
- output ./tmp.mri_nu_correct.mni.8467/ones.mgz
- Binarizing based on threshold
- min -1
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Found 16777216 values in range
- Counting number of voxels in first frame
- Found 16777216 voxels in final mask
- Count: 16777216 16777216.000000 16777216 100.000000
- mri_binarize done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8467/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.8467/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8467/input.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8467/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.8467/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8467/input.mean.dat
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.8467/ones.mgz
- Loading orig.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.8467/input.mean.dat
- mri_segstats done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8467/ones.mgz --i ./tmp.mri_nu_correct.mni.8467/nu2.mnc --sum ./tmp.mri_nu_correct.mni.8467/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8467/output.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.8467/ones.mgz --i ./tmp.mri_nu_correct.mni.8467/nu2.mnc --sum ./tmp.mri_nu_correct.mni.8467/sum.junk --avgwf ./tmp.mri_nu_correct.mni.8467/output.mean.dat
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.8467/ones.mgz
- Loading ./tmp.mri_nu_correct.mni.8467/nu2.mnc
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.8467/output.mean.dat
- mri_segstats done
- mris_calc -o ./tmp.mri_nu_correct.mni.8467/nu2.mnc ./tmp.mri_nu_correct.mni.8467/nu2.mnc mul .99007525803542054618
- Saving result to './tmp.mri_nu_correct.mni.8467/nu2.mnc' (type = MINC ) [ ok ]
- mri_convert ./tmp.mri_nu_correct.mni.8467/nu2.mnc nu.mgz --like orig.mgz
- mri_convert.bin ./tmp.mri_nu_correct.mni.8467/nu2.mnc nu.mgz --like orig.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.8467/nu2.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- INFO: transform src into the like-volume: orig.mgz
- writing to nu.mgz...
- mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz
- type change took 0 minutes and 8 seconds.
- mapping (13, 149) to ( 3, 110)
-
-
- Sat Oct 7 16:56:43 CEST 2017
- mri_nu_correct.mni done
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/transforms/talairach.xfm nu.mgz nu.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Intensity Normalization Sat Oct 7 16:56:44 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_normalize -g 1 -mprage nu.mgz T1.mgz
- using max gradient = 1.000
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- reading from nu.mgz...
- normalizing image...
- talairach transform
- 1.06963 -0.05226 -0.01052 0.13986;
- 0.05758 0.94559 0.12121 -12.63560;
- -0.00993 -0.14549 1.05633 -26.79993;
- 0.00000 0.00000 0.00000 1.00000;
- processing without aseg, no1d=0
- MRInormInit():
- INFO: Modifying talairach volume c_(r,a,s) based on average_305
- MRInormalize():
- MRIsplineNormalize(): npeaks = 16
- Starting OpenSpline(): npoints = 16
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 107
- gm peak at 69 (69), valley at 38 (38)
- csf peak at 35, setting threshold to 57
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 67 (67), valley at 37 (37)
- csf peak at 34, setting threshold to 56
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to T1.mgz
- 3D bias adjustment took 2 minutes and 15 seconds.
- #--------------------------------------------
- #@# Skull Stripping Sat Oct 7 16:59:00 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta
- aligning to atlas containing skull, setting unknown_nbr_spacing = 5
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach_with_skull.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca'...
- average std = 22.9 using min determinant for regularization = 52.6
- 0 singular and 9002 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 8.7 or > 569.1
- total sample mean = 77.6 (1399 zeros)
- ************************************************
- spacing=8, using 3243 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 3243, passno 0, spacing 8
- resetting wm mean[0]: 100 --> 108
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=7.0
- skull bounding box = (47, 17, 10) --> (208, 172, 223)
- using (101, 69, 117) as brain centroid...
- mean wm in atlas = 108, using box (81,50,91) --> (120, 88,143) to find MRI wm
- before smoothing, mri peak at 107
- robust fit to distribution - 106 +- 7.0
- after smoothing, mri peak at 106, scaling input intensities by 1.019
- scaling channel 0 by 1.01887
- initial log_p = -4.629
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.270326 @ (-9.091, 27.273, -9.091)
- max log p = -4.122816 @ (4.545, -4.545, 4.545)
- max log p = -4.097615 @ (2.273, 2.273, -2.273)
- max log p = -4.075094 @ (-1.136, -3.409, 1.136)
- max log p = -4.048532 @ (1.705, 2.841, 0.568)
- max log p = -4.048532 @ (0.000, 0.000, 0.000)
- Found translation: (-1.7, 24.4, -5.1): log p = -4.049
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.997, old_max_log_p =-4.049 (thresh=-4.0)
- 1.07500 0.00000 0.00000 -11.19804;
- 0.00000 1.06580 0.14032 0.40221;
- 0.00000 -0.12074 0.91709 18.72321;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.922, old_max_log_p =-3.997 (thresh=-4.0)
- 1.07500 0.00000 0.00000 -11.19804;
- 0.00000 1.14574 0.15084 -2.73070;
- 0.00000 -0.12979 0.98587 11.80820;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 2 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.914, old_max_log_p =-3.922 (thresh=-3.9)
- 1.07500 0.00000 0.00000 -11.19804;
- 0.00000 1.23934 0.02243 1.64147;
- 0.00000 0.01930 0.92234 2.53082;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 3 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.909, old_max_log_p =-3.914 (thresh=-3.9)
- 1.07500 0.00000 0.00000 -11.19804;
- 0.00000 1.23934 0.02243 1.64147;
- 0.00000 0.02075 0.99151 -5.59862;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 4 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.909, old_max_log_p =-3.909 (thresh=-3.9)
- 1.07500 0.00000 0.00000 -11.19804;
- 0.00000 1.23934 0.02243 1.64147;
- 0.00000 0.02075 0.99151 -5.59862;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 5 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.800, old_max_log_p =-3.909 (thresh=-3.9)
- 1.05377 0.03106 0.03509 -15.88112;
- -0.03073 1.19120 0.08297 4.15741;
- -0.03179 -0.05698 0.93263 10.18983;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 6 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.791, old_max_log_p =-3.800 (thresh=-3.8)
- 1.03247 0.02738 0.06425 -16.25537;
- -0.03175 1.18870 0.11344 0.93541;
- -0.06645 -0.09871 0.94517 19.57571;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 7 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.791, old_max_log_p =-3.791 (thresh=-3.8)
- 1.03247 0.02738 0.06425 -16.25537;
- -0.03175 1.18870 0.11344 0.93541;
- -0.06645 -0.09871 0.94517 19.57571;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 8 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.770, old_max_log_p =-3.791 (thresh=-3.8)
- 1.03707 0.02846 0.04889 -15.15801;
- -0.02953 1.18990 0.08236 4.16176;
- -0.05037 -0.05910 0.94596 12.11574;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 9 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.766, old_max_log_p =-3.770 (thresh=-3.8)
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 10 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.766, old_max_log_p =-3.766 (thresh=-3.8)
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 3243 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 3243
- Quasinewton: input matrix
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 013: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.766 (old=-4.629)
- transform before final EM align:
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 364799 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 364799
- Quasinewton: input matrix
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 015: -log(p) = 4.2 tol 0.000000
- final transform:
- 1.03784 0.02792 0.05669 -16.11745;
- -0.02990 1.18798 0.08999 3.52071;
- -0.05861 -0.06906 0.94482 14.39703;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach_with_skull.lta...
- mri_em_register utimesec 1876.490730
- mri_em_register stimesec 1.487773
- mri_em_register ru_maxrss 609824
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 157613
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 24
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 525
- mri_em_register ru_nivcsw 7267
- registration took 16 minutes and 5 seconds.
- mri_watershed -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mri_watershed.dat -T1 -brain_atlas /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz
- Mode: T1 normalized volume
- Mode: Use the information of atlas (default parms, --help for details)
- *********************************************************
- The input file is T1.mgz
- The output file is brainmask.auto.mgz
- Weighting the input with atlas information before watershed
- *************************WATERSHED**************************
- Sorting...
- first estimation of the COG coord: x=127 y=86 z=115 r=72
- first estimation of the main basin volume: 1608275 voxels
- Looking for seedpoints
- 2 found in the cerebellum
- 17 found in the rest of the brain
- global maximum in x=108, y=77, z=81, Imax=255
- CSF=15, WM_intensity=110, WM_VARIANCE=5
- WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110
- preflooding height equal to 10 percent
- done.
- Analyze...
- main basin size=8856533856 voxels, voxel volume =1.000
- = 8856533856 mmm3 = 8856534.016 cm3
- done.
- PostAnalyze...Basin Prior
- 86 basins merged thanks to atlas
- ***** 0 basin(s) merged in 1 iteration(s)
- ***** 0 voxel(s) added to the main basin
- done.
- Weighting the input with prior template
- ****************TEMPLATE DEFORMATION****************
- second estimation of the COG coord: x=128,y=96, z=108, r=10154 iterations
- ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^
- GLOBAL CSF_MIN=0, CSF_intensity=9, CSF_MAX=39 , nb = 44703
- RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=29 , nb = -1038838262
- LEFT_CER CSF_MIN=0, CSF_intensity=9, CSF_MAX=30 , nb = -1052056815
- RIGHT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=41 , nb = -1081670142
- LEFT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=39 , nb = 1078753462
- OTHER CSF_MIN=0, CSF_intensity=9, CSF_MAX=52 , nb = 1067864094
-
- CSF_MAX TRANSITION GM_MIN GM
- GLOBAL
- before analyzing : 39, 37, 37, 61
- after analyzing : 28, 37, 37, 43
- RIGHT_CER
- before analyzing : 29, 34, 40, 64
- after analyzing : 29, 38, 40, 44
- LEFT_CER
- before analyzing : 30, 29, 29, 58
- after analyzing : 21, 29, 29, 36
- RIGHT_BRAIN
- before analyzing : 41, 38, 37, 61
- after analyzing : 29, 38, 38, 43
- LEFT_BRAIN
- before analyzing : 39, 37, 37, 59
- after analyzing : 28, 37, 37, 42
- OTHER
- before analyzing : 52, 63, 70, 92
- after analyzing : 52, 67, 70, 73
- mri_strip_skull: done peeling brain
- highly tesselated surface with 10242 vertices
- matching...65 iterations
- *********************VALIDATION*********************
- curvature mean = -0.013, std = 0.011
- curvature mean = 71.808, std = 9.474
- No Rigid alignment: -atlas Mode Off (basic atlas / no registration)
- before rotation: sse = 1.22, sigma = 2.40
- after rotation: sse = 1.22, sigma = 2.40
- Localization of inacurate regions: Erosion-Dilation steps
- the sse mean is 1.22, its var is 1.87
- before Erosion-Dilatation 0.00% of inacurate vertices
- after Erosion-Dilatation 0.00% of inacurate vertices
- Validation of the shape of the surface done.
- Scaling of atlas fields onto current surface fields
- ********FINAL ITERATIVE TEMPLATE DEFORMATION********
- Compute Local values csf/gray
- Fine Segmentation...48 iterations
- mri_strip_skull: done peeling brain
- Brain Size = 1790396 voxels, voxel volume = 1.000 mm3
- = 1790396 mmm3 = 1790.396 cm3
- ******************************
- Saving brainmask.auto.mgz
- done
- mri_watershed utimesec 25.589109
- mri_watershed stimesec 0.381941
- mri_watershed ru_maxrss 829020
- mri_watershed ru_ixrss 0
- mri_watershed ru_idrss 0
- mri_watershed ru_isrss 0
- mri_watershed ru_minflt 214597
- mri_watershed ru_majflt 0
- mri_watershed ru_nswap 0
- mri_watershed ru_inblock 0
- mri_watershed ru_oublock 3096
- mri_watershed ru_msgsnd 0
- mri_watershed ru_msgrcv 0
- mri_watershed ru_nsignals 0
- mri_watershed ru_nvcsw 1133
- mri_watershed ru_nivcsw 62
- mri_watershed done
- cp brainmask.auto.mgz brainmask.mgz
- #-------------------------------------
- #@# EM Registration Sat Oct 7 17:15:30 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta
- setting unknown_nbr_spacing = 3
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 841 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 6.3 or > 503.7
- total sample mean = 78.8 (1011 zeros)
- ************************************************
- spacing=8, using 2830 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 2830, passno 0, spacing 8
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=15.9
- skull bounding box = (61, 31, 25) --> (196, 167, 205)
- using (106, 76, 115) as brain centroid...
- mean wm in atlas = 107, using box (89,59,93) --> (122, 92,137) to find MRI wm
- before smoothing, mri peak at 107
- robust fit to distribution - 106 +- 7.0
- after smoothing, mri peak at 106, scaling input intensities by 1.009
- scaling channel 0 by 1.00943
- initial log_p = -4.569
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.028836 @ (-9.091, 27.273, -9.091)
- max log p = -3.749649 @ (4.545, -4.545, 4.545)
- max log p = -3.737615 @ (2.273, 2.273, -2.273)
- max log p = -3.709640 @ (1.136, -3.409, 3.409)
- max log p = -3.705688 @ (-0.568, 1.705, 0.568)
- max log p = -3.688835 @ (-1.420, 1.420, -2.557)
- Found translation: (-3.1, 24.7, -5.4): log p = -3.689
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.591, old_max_log_p =-3.689 (thresh=-3.7)
- 1.07500 0.00000 0.00000 -12.86467;
- 0.00000 1.06580 0.14032 2.93974;
- 0.00000 -0.12074 0.91709 15.21114;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.591, old_max_log_p =-3.591 (thresh=-3.6)
- 1.07500 0.00000 0.00000 -12.86467;
- 0.00000 1.06580 0.14032 2.93974;
- 0.00000 -0.12074 0.91709 15.21114;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 2 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.436, old_max_log_p =-3.591 (thresh=-3.6)
- 1.03247 -0.00760 0.05773 -13.02213;
- 0.00226 1.08832 0.11339 5.25565;
- -0.07159 -0.08581 0.93663 20.98139;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.419, old_max_log_p =-3.436 (thresh=-3.4)
- 1.05183 -0.00774 0.05881 -13.76761;
- -0.00009 1.08493 0.14398 2.55316;
- -0.07162 -0.12138 0.93242 24.75772;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 4 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.419, old_max_log_p =-3.419 (thresh=-3.4)
- 1.05183 -0.00774 0.05881 -13.76761;
- -0.00009 1.08493 0.14398 2.55316;
- -0.07162 -0.12138 0.93242 24.75772;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 5 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.380, old_max_log_p =-3.419 (thresh=-3.4)
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 6 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.380, old_max_log_p =-3.380 (thresh=-3.4)
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 2830 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 2830
- Quasinewton: input matrix
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.380 (old=-4.569)
- transform before final EM align:
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 315557 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 315557
- Quasinewton: input matrix
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 011: -log(p) = 3.8 tol 0.000000
- final transform:
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach.lta...
- mri_em_register utimesec 1041.241707
- mri_em_register stimesec 1.071837
- mri_em_register ru_maxrss 599052
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 158956
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 24
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 246
- mri_em_register ru_nivcsw 2991
- registration took 8 minutes and 58 seconds.
- #--------------------------------------
- #@# CA Normalize Sat Oct 7 17:24:28 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz
- writing control point volume to ctrl_pts.mgz
- using MR volume brainmask.mgz to mask input volume...
- reading 1 input volume
- reading atlas from '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- reading transform from 'transforms/talairach.lta'...
- reading input volume from nu.mgz...
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=15.9
- skull bounding box = (61, 31, 25) --> (196, 167, 205)
- using (106, 76, 115) as brain centroid...
- mean wm in atlas = 107, using box (89,59,93) --> (122, 92,137) to find MRI wm
- before smoothing, mri peak at 107
- robust fit to distribution - 106 +- 7.0
- after smoothing, mri peak at 106, scaling input intensities by 1.009
- scaling channel 0 by 1.00943
- using 246344 sample points...
- INFO: compute sample coordinates transform
- 1.05037 0.00284 0.04446 -13.01638;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47142;
- 0.00000 0.00000 0.00000 1.00000;
- INFO: transform used
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (127, 32, 26) --> (191, 139, 204)
- Left_Cerebral_White_Matter: limiting intensities to 104.0 --> 132.0
- 4 of 6 (66.7%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (66, 34, 24) --> (129, 140, 202)
- Right_Cerebral_White_Matter: limiting intensities to 112.0 --> 132.0
- 4 of 11 (36.4%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (130, 115, 53) --> (176, 154, 111)
- Left_Cerebellum_White_Matter: limiting intensities to 104.0 --> 132.0
- 1 of 15 (6.7%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (87, 115, 49) --> (129, 153, 110)
- Right_Cerebellum_White_Matter: limiting intensities to 103.0 --> 132.0
- 2 of 24 (8.3%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (112, 104, 90) --> (145, 169, 122)
- Brain_Stem: limiting intensities to 105.0 --> 132.0
- 0 of 4 (0.0%) samples deleted
- using 60 total control points for intensity normalization...
- bias field = 0.786 +- 0.077
- 0 of 49 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (127, 32, 26) --> (191, 139, 204)
- Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 5 of 110 (4.5%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (66, 34, 24) --> (129, 140, 202)
- Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 0 of 92 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (130, 115, 53) --> (176, 154, 111)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 12 of 31 (38.7%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (87, 115, 49) --> (129, 153, 110)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 23 of 78 (29.5%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (112, 104, 90) --> (145, 169, 122)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 73 of 112 (65.2%) samples deleted
- using 423 total control points for intensity normalization...
- bias field = 1.017 +- 0.106
- 0 of 304 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (127, 32, 26) --> (191, 139, 204)
- Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 8 of 253 (3.2%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (66, 34, 24) --> (129, 140, 202)
- Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 0 of 218 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (130, 115, 53) --> (176, 154, 111)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 61 of 96 (63.5%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (87, 115, 49) --> (129, 153, 110)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 58 of 93 (62.4%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (112, 104, 90) --> (145, 169, 122)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 105 of 133 (78.9%) samples deleted
- using 793 total control points for intensity normalization...
- bias field = 1.007 +- 0.060
- 1 of 559 control points discarded
- writing normalized volume to norm.mgz...
- writing control points to ctrl_pts.mgz
- freeing GCA...done.
- normalization took 1 minutes and 55 seconds.
- #--------------------------------------
- #@# CA Reg Sat Oct 7 17:26:23 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_ca_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z
- not handling expanded ventricles...
- using previously computed transform transforms/talairach.lta
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -regularize_mean 0.500
- -regularize 0.500
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_ca_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading input volume 'norm.mgz'...
- reading GCA '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- label assignment complete, 0 changed (0.00%)
- det(m_affine) = 1.08 (predicted orig area = 7.4)
- label assignment complete, 0 changed (0.00%)
- freeing gibbs priors...done.
- average std[0] = 5.0
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.039
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.779, neg=0, invalid=762
- 0001: dt=236.394937, rms=0.738 (5.312%), neg=0, invalid=762
- 0002: dt=221.952000, rms=0.725 (1.765%), neg=0, invalid=762
- 0003: dt=129.472000, rms=0.720 (0.710%), neg=0, invalid=762
- 0004: dt=517.888000, rms=0.712 (1.046%), neg=0, invalid=762
- 0005: dt=129.472000, rms=0.710 (0.334%), neg=0, invalid=762
- 0006: dt=517.888000, rms=0.706 (0.545%), neg=0, invalid=762
- 0007: dt=129.472000, rms=0.704 (0.226%), neg=0, invalid=762
- 0008: dt=129.472000, rms=0.703 (0.137%), neg=0, invalid=762
- 0009: dt=129.472000, rms=0.702 (0.232%), neg=0, invalid=762
- 0010: dt=129.472000, rms=0.699 (0.325%), neg=0, invalid=762
- 0011: dt=129.472000, rms=0.697 (0.380%), neg=0, invalid=762
- 0012: dt=129.472000, rms=0.694 (0.408%), neg=0, invalid=762
- 0013: dt=129.472000, rms=0.691 (0.427%), neg=0, invalid=762
- 0014: dt=129.472000, rms=0.688 (0.400%), neg=0, invalid=762
- 0015: dt=129.472000, rms=0.686 (0.370%), neg=0, invalid=762
- 0016: dt=129.472000, rms=0.683 (0.332%), neg=0, invalid=762
- 0017: dt=129.472000, rms=0.681 (0.323%), neg=0, invalid=762
- 0018: dt=129.472000, rms=0.679 (0.309%), neg=0, invalid=762
- 0019: dt=129.472000, rms=0.677 (0.286%), neg=0, invalid=762
- 0020: dt=129.472000, rms=0.675 (0.257%), neg=0, invalid=762
- 0021: dt=129.472000, rms=0.674 (0.246%), neg=0, invalid=762
- 0022: dt=129.472000, rms=0.672 (0.216%), neg=0, invalid=762
- 0023: dt=129.472000, rms=0.671 (0.202%), neg=0, invalid=762
- 0024: dt=129.472000, rms=0.669 (0.195%), neg=0, invalid=762
- 0025: dt=129.472000, rms=0.668 (0.175%), neg=0, invalid=762
- 0026: dt=129.472000, rms=0.667 (0.147%), neg=0, invalid=762
- 0027: dt=129.472000, rms=0.667 (0.115%), neg=0, invalid=762
- 0028: dt=129.472000, rms=0.666 (0.101%), neg=0, invalid=762
- 0029: dt=887.808000, rms=0.665 (0.141%), neg=0, invalid=762
- 0030: dt=32.368000, rms=0.665 (0.004%), neg=0, invalid=762
- 0031: dt=32.368000, rms=0.665 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.665, neg=0, invalid=762
- 0032: dt=73.984000, rms=0.665 (0.099%), neg=0, invalid=762
- 0033: dt=110.976000, rms=0.665 (0.010%), neg=0, invalid=762
- 0034: dt=110.976000, rms=0.665 (0.011%), neg=0, invalid=762
- 0035: dt=110.976000, rms=0.665 (0.009%), neg=0, invalid=762
- 0036: dt=110.976000, rms=0.664 (0.013%), neg=0, invalid=762
- 0037: dt=110.976000, rms=0.664 (0.022%), neg=0, invalid=762
- 0038: dt=110.976000, rms=0.664 (0.042%), neg=0, invalid=762
- 0039: dt=110.976000, rms=0.664 (0.049%), neg=0, invalid=762
- 0040: dt=110.976000, rms=0.663 (0.050%), neg=0, invalid=762
- 0041: dt=110.976000, rms=0.663 (0.039%), neg=0, invalid=762
- setting smoothness coefficient to 0.154
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.668, neg=0, invalid=762
- 0042: dt=231.005917, rms=0.659 (1.249%), neg=0, invalid=762
- 0043: dt=145.152000, rms=0.650 (1.380%), neg=0, invalid=762
- 0044: dt=79.714286, rms=0.647 (0.447%), neg=0, invalid=762
- 0045: dt=248.832000, rms=0.642 (0.845%), neg=0, invalid=762
- 0046: dt=76.631579, rms=0.640 (0.377%), neg=0, invalid=762
- 0047: dt=141.772152, rms=0.637 (0.470%), neg=0, invalid=762
- 0048: dt=36.288000, rms=0.635 (0.204%), neg=0, invalid=762
- 0049: dt=36.288000, rms=0.635 (0.094%), neg=0, invalid=762
- 0050: dt=36.288000, rms=0.634 (0.145%), neg=0, invalid=762
- 0051: dt=36.288000, rms=0.632 (0.221%), neg=0, invalid=762
- 0052: dt=36.288000, rms=0.630 (0.301%), neg=0, invalid=762
- 0053: dt=36.288000, rms=0.628 (0.334%), neg=0, invalid=762
- 0054: dt=36.288000, rms=0.626 (0.334%), neg=0, invalid=762
- 0055: dt=36.288000, rms=0.624 (0.331%), neg=0, invalid=762
- 0056: dt=36.288000, rms=0.622 (0.326%), neg=0, invalid=762
- 0057: dt=36.288000, rms=0.620 (0.303%), neg=0, invalid=762
- 0058: dt=36.288000, rms=0.618 (0.291%), neg=0, invalid=762
- 0059: dt=36.288000, rms=0.617 (0.281%), neg=0, invalid=762
- 0060: dt=36.288000, rms=0.615 (0.262%), neg=0, invalid=762
- 0061: dt=36.288000, rms=0.614 (0.239%), neg=0, invalid=762
- 0062: dt=36.288000, rms=0.612 (0.214%), neg=0, invalid=762
- 0063: dt=36.288000, rms=0.611 (0.193%), neg=0, invalid=762
- 0064: dt=36.288000, rms=0.610 (0.184%), neg=0, invalid=762
- 0065: dt=36.288000, rms=0.609 (0.167%), neg=0, invalid=762
- 0066: dt=36.288000, rms=0.608 (0.153%), neg=0, invalid=762
- 0067: dt=36.288000, rms=0.607 (0.134%), neg=0, invalid=762
- 0068: dt=36.288000, rms=0.606 (0.121%), neg=0, invalid=762
- 0069: dt=36.288000, rms=0.606 (0.109%), neg=0, invalid=762
- 0070: dt=82.944000, rms=0.606 (0.007%), neg=0, invalid=762
- 0071: dt=82.944000, rms=0.606 (0.013%), neg=0, invalid=762
- 0072: dt=82.944000, rms=0.606 (0.024%), neg=0, invalid=762
- 0073: dt=82.944000, rms=0.605 (0.026%), neg=0, invalid=762
- 0074: dt=82.944000, rms=0.605 (0.028%), neg=0, invalid=762
- 0075: dt=82.944000, rms=0.605 (0.043%), neg=0, invalid=762
- 0076: dt=82.944000, rms=0.605 (0.040%), neg=0, invalid=762
- 0077: dt=82.944000, rms=0.604 (0.046%), neg=0, invalid=762
- 0078: dt=82.944000, rms=0.604 (0.057%), neg=0, invalid=762
- 0079: dt=82.944000, rms=0.604 (0.082%), neg=0, invalid=762
- 0080: dt=82.944000, rms=0.603 (0.087%), neg=0, invalid=762
- 0081: dt=82.944000, rms=0.602 (0.098%), neg=0, invalid=762
- 0082: dt=82.944000, rms=0.602 (0.120%), neg=0, invalid=762
- 0083: dt=82.944000, rms=0.601 (0.133%), neg=0, invalid=762
- 0084: dt=82.944000, rms=0.600 (0.128%), neg=0, invalid=762
- 0085: dt=82.944000, rms=0.599 (0.119%), neg=0, invalid=762
- 0086: dt=82.944000, rms=0.599 (0.146%), neg=0, invalid=762
- 0087: dt=82.944000, rms=0.598 (0.130%), neg=0, invalid=762
- 0088: dt=82.944000, rms=0.597 (0.115%), neg=0, invalid=762
- 0089: dt=82.944000, rms=0.596 (0.106%), neg=0, invalid=762
- 0090: dt=145.152000, rms=0.596 (0.009%), neg=0, invalid=762
- 0091: dt=145.152000, rms=0.596 (-0.013%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.597, neg=0, invalid=762
- 0092: dt=82.944000, rms=0.596 (0.234%), neg=0, invalid=762
- 0093: dt=145.152000, rms=0.595 (0.093%), neg=0, invalid=762
- 0094: dt=145.152000, rms=0.595 (0.001%), neg=0, invalid=762
- 0095: dt=145.152000, rms=0.594 (0.110%), neg=0, invalid=762
- 0096: dt=145.152000, rms=0.594 (0.037%), neg=0, invalid=762
- 0097: dt=145.152000, rms=0.594 (-0.021%), neg=0, invalid=762
- setting smoothness coefficient to 0.588
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.614, neg=0, invalid=762
- 0098: dt=0.000000, rms=0.614 (0.104%), neg=0, invalid=762
- 0099: dt=0.000000, rms=0.614 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.614, neg=0, invalid=762
- 0100: dt=0.000000, rms=0.614 (0.104%), neg=0, invalid=762
- 0101: dt=0.000000, rms=0.614 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.674, neg=0, invalid=762
- 0102: dt=4.473538, rms=0.659 (2.126%), neg=0, invalid=762
- 0103: dt=1.071429, rms=0.659 (0.030%), neg=0, invalid=762
- 0104: dt=1.071429, rms=0.659 (-0.021%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.660, neg=0, invalid=762
- 0105: dt=0.000000, rms=0.659 (0.080%), neg=0, invalid=762
- 0106: dt=0.000000, rms=0.659 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 5.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.722, neg=0, invalid=762
- 0107: dt=1.792000, rms=0.713 (1.227%), neg=0, invalid=762
- 0108: dt=1.536000, rms=0.710 (0.465%), neg=0, invalid=762
- 0109: dt=0.448000, rms=0.709 (0.068%), neg=0, invalid=762
- 0110: dt=0.448000, rms=0.709 (0.028%), neg=0, invalid=762
- 0111: dt=0.448000, rms=0.709 (-0.002%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.710, neg=0, invalid=762
- 0112: dt=1.280000, rms=0.708 (0.198%), neg=0, invalid=762
- 0113: dt=0.256000, rms=0.708 (0.004%), neg=0, invalid=762
- 0114: dt=0.256000, rms=0.708 (0.002%), neg=0, invalid=762
- 0115: dt=0.256000, rms=0.708 (-0.005%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 10.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.666, neg=0, invalid=762
- 0116: dt=0.882301, rms=0.646 (2.987%), neg=0, invalid=762
- 0117: dt=0.080000, rms=0.645 (0.163%), neg=0, invalid=762
- 0118: dt=0.080000, rms=0.645 (-0.082%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.646, neg=0, invalid=762
- 0119: dt=0.028000, rms=0.645 (0.098%), neg=0, invalid=762
- 0120: dt=0.007000, rms=0.645 (-0.000%), neg=0, invalid=762
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.10027 (20)
- mri peak = 0.09535 (14)
- Left_Lateral_Ventricle (4): linear fit = 0.81 x + 0.0 (2289 voxels, overlap=0.690)
- Left_Lateral_Ventricle (4): linear fit = 0.81 x + 0.0 (2289 voxels, peak = 16), gca=16.3
- gca peak = 0.15565 (16)
- mri peak = 0.10339 (22)
- Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (1403 voxels, overlap=0.923)
- Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (1403 voxels, peak = 17), gca=16.6
- gca peak = 0.26829 (96)
- mri peak = 0.07579 (93)
- Right_Pallidum (52): linear fit = 0.98 x + 0.0 (732 voxels, overlap=1.002)
- Right_Pallidum (52): linear fit = 0.98 x + 0.0 (732 voxels, peak = 94), gca=93.6
- gca peak = 0.20183 (93)
- mri peak = 0.08640 (95)
- Left_Pallidum (13): linear fit = 1.00 x + 0.0 (688 voxels, overlap=1.009)
- Left_Pallidum (13): linear fit = 1.00 x + 0.0 (688 voxels, peak = 93), gca=92.5
- gca peak = 0.21683 (55)
- mri peak = 0.09986 (63)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (726 voxels, overlap=0.940)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (726 voxels, peak = 57), gca=57.5
- gca peak = 0.30730 (58)
- mri peak = 0.07940 (59)
- Left_Hippocampus (17): linear fit = 1.02 x + 0.0 (548 voxels, overlap=0.999)
- Left_Hippocampus (17): linear fit = 1.02 x + 0.0 (548 voxels, peak = 59), gca=59.4
- gca peak = 0.11430 (101)
- mri peak = 0.07143 (105)
- Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (54924 voxels, overlap=0.687)
- Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (54924 voxels, peak = 107), gca=106.6
- gca peak = 0.12076 (102)
- mri peak = 0.07283 (105)
- Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (52967 voxels, overlap=0.719)
- Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (52967 voxels, peak = 107), gca=106.6
- gca peak = 0.14995 (59)
- mri peak = 0.04644 (58)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (17780 voxels, overlap=0.997)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (17780 voxels, peak = 60), gca=60.5
- gca peak = 0.15082 (58)
- mri peak = 0.04341 (61)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (18962 voxels, overlap=0.979)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (18962 voxels, peak = 59), gca=59.4
- gca peak = 0.14161 (67)
- mri peak = 0.08212 (74)
- Right_Caudate (50): linear fit = 1.05 x + 0.0 (846 voxels, overlap=0.949)
- Right_Caudate (50): linear fit = 1.05 x + 0.0 (846 voxels, peak = 71), gca=70.7
- gca peak = 0.15243 (71)
- mri peak = 0.09034 (71)
- Left_Caudate (11): linear fit = 0.98 x + 0.0 (952 voxels, overlap=0.987)
- Left_Caudate (11): linear fit = 0.98 x + 0.0 (952 voxels, peak = 69), gca=69.2
- gca peak = 0.13336 (57)
- mri peak = 0.04591 (58)
- Left_Cerebellum_Cortex (8): linear fit = 1.04 x + 0.0 (11458 voxels, overlap=0.960)
- Left_Cerebellum_Cortex (8): linear fit = 1.04 x + 0.0 (11458 voxels, peak = 60), gca=59.6
- gca peak = 0.13252 (56)
- mri peak = 0.04983 (62)
- Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (13185 voxels, overlap=0.758)
- Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (13185 voxels, peak = 62), gca=62.4
- gca peak = 0.18181 (84)
- mri peak = 0.06867 (84)
- Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (5963 voxels, overlap=0.958)
- Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (5963 voxels, peak = 85), gca=85.3
- gca peak = 0.20573 (83)
- mri peak = 0.07218 (83)
- Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (6269 voxels, overlap=0.956)
- Right_Cerebellum_White_Matter (46): linear fit = 1.02 x + 0.0 (6269 voxels, peak = 85), gca=85.1
- gca peak = 0.21969 (57)
- mri peak = 0.08642 (61)
- Left_Amygdala (18): linear fit = 1.04 x + 0.0 (411 voxels, overlap=1.003)
- Left_Amygdala (18): linear fit = 1.04 x + 0.0 (411 voxels, peak = 60), gca=59.6
- gca peak = 0.39313 (56)
- mri peak = 0.10972 (60)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (520 voxels, overlap=0.996)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (520 voxels, peak = 59), gca=58.5
- gca peak = 0.14181 (85)
- mri peak = 0.06252 (87)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4157 voxels, overlap=0.984)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4157 voxels, peak = 85), gca=84.6
- gca peak = 0.11978 (83)
- mri peak = 0.06892 (88)
- Right_Thalamus_Proper (49): linear fit = 1.03 x + 0.0 (3944 voxels, overlap=0.885)
- Right_Thalamus_Proper (49): linear fit = 1.03 x + 0.0 (3944 voxels, peak = 86), gca=85.9
- gca peak = 0.13399 (79)
- mri peak = 0.07629 (77)
- Left_Putamen (12): linear fit = 1.01 x + 0.0 (2102 voxels, overlap=0.995)
- Left_Putamen (12): linear fit = 1.01 x + 0.0 (2102 voxels, peak = 80), gca=80.2
- gca peak = 0.14159 (79)
- mri peak = 0.06471 (82)
- Right_Putamen (51): linear fit = 1.02 x + 0.0 (2198 voxels, overlap=0.939)
- Right_Putamen (51): linear fit = 1.02 x + 0.0 (2198 voxels, peak = 81), gca=81.0
- gca peak = 0.10025 (80)
- mri peak = 0.12381 (81)
- Brain_Stem (16): linear fit = 1.07 x + 0.0 (9667 voxels, overlap=0.401)
- Brain_Stem (16): linear fit = 1.07 x + 0.0 (9667 voxels, peak = 85), gca=85.2
- gca peak = 0.13281 (86)
- mri peak = 0.06903 (87)
- Right_VentralDC (60): linear fit = 1.09 x + 0.0 (1167 voxels, overlap=0.668)
- Right_VentralDC (60): linear fit = 1.09 x + 0.0 (1167 voxels, peak = 93), gca=93.3
- gca peak = 0.12801 (89)
- mri peak = 0.06534 (88)
- Left_VentralDC (28): linear fit = 1.05 x + 0.0 (1225 voxels, overlap=0.704)
- Left_VentralDC (28): linear fit = 1.05 x + 0.0 (1225 voxels, peak = 94), gca=93.9
- gca peak = 0.20494 (23)
- mri peak = 0.14088 (22)
- gca peak = 0.15061 (21)
- mri peak = 0.09192 (21)
- Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (537 voxels, overlap=0.924)
- Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (537 voxels, peak = 20), gca=20.5
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.18056 (32)
- gca peak Left_Thalamus = 0.64095 (94)
- gca peak Third_Ventricle = 0.20494 (23)
- gca peak CSF = 0.20999 (34)
- gca peak Left_Accumbens_area = 0.39030 (62)
- gca peak Left_undetermined = 0.95280 (25)
- gca peak Left_vessel = 0.67734 (53)
- gca peak Left_choroid_plexus = 0.09433 (44)
- gca peak Right_Inf_Lat_Vent = 0.23544 (26)
- gca peak Right_Accumbens_area = 0.30312 (64)
- gca peak Right_vessel = 0.46315 (51)
- gca peak Right_choroid_plexus = 0.14086 (44)
- gca peak Fifth_Ventricle = 0.51669 (36)
- gca peak WM_hypointensities = 0.09722 (76)
- gca peak non_WM_hypointensities = 0.11899 (47)
- gca peak Optic_Chiasm = 0.39033 (72)
- label assignment complete, 0 changed (0.00%)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.03 x + 0.0
- estimating mean wm scale to be 1.05 x + 0.0
- estimating mean csf scale to be 0.94 x + 0.0
- saving intensity scales to talairach.label_intensities.txt
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.662, neg=0, invalid=762
- 0121: dt=92.480000, rms=0.658 (0.573%), neg=0, invalid=762
- 0122: dt=295.936000, rms=0.656 (0.402%), neg=0, invalid=762
- 0123: dt=369.920000, rms=0.653 (0.453%), neg=0, invalid=762
- 0124: dt=92.480000, rms=0.651 (0.214%), neg=0, invalid=762
- 0125: dt=517.888000, rms=0.651 (0.143%), neg=0, invalid=762
- 0126: dt=221.952000, rms=0.649 (0.303%), neg=0, invalid=762
- 0127: dt=73.984000, rms=0.648 (0.048%), neg=0, invalid=762
- 0128: dt=73.984000, rms=0.648 (0.023%), neg=0, invalid=762
- 0129: dt=73.984000, rms=0.648 (0.047%), neg=0, invalid=762
- 0130: dt=73.984000, rms=0.647 (0.082%), neg=0, invalid=762
- 0131: dt=73.984000, rms=0.647 (0.118%), neg=0, invalid=762
- 0132: dt=73.984000, rms=0.646 (0.141%), neg=0, invalid=762
- 0133: dt=73.984000, rms=0.645 (0.139%), neg=0, invalid=762
- 0134: dt=73.984000, rms=0.644 (0.131%), neg=0, invalid=762
- 0135: dt=73.984000, rms=0.643 (0.119%), neg=0, invalid=762
- 0136: dt=73.984000, rms=0.642 (0.112%), neg=0, invalid=762
- 0137: dt=73.984000, rms=0.642 (0.111%), neg=0, invalid=762
- 0138: dt=73.984000, rms=0.641 (0.110%), neg=0, invalid=762
- 0139: dt=73.984000, rms=0.640 (0.110%), neg=0, invalid=762
- 0140: dt=73.984000, rms=0.640 (0.106%), neg=0, invalid=762
- 0141: dt=73.984000, rms=0.639 (0.100%), neg=0, invalid=762
- 0142: dt=73.984000, rms=0.638 (0.086%), neg=0, invalid=762
- 0143: dt=73.984000, rms=0.638 (0.079%), neg=0, invalid=762
- 0144: dt=73.984000, rms=0.637 (0.071%), neg=0, invalid=762
- 0145: dt=73.984000, rms=0.637 (0.064%), neg=0, invalid=762
- 0146: dt=73.984000, rms=0.637 (0.061%), neg=0, invalid=762
- 0147: dt=73.984000, rms=0.636 (0.065%), neg=0, invalid=762
- 0148: dt=73.984000, rms=0.636 (0.063%), neg=0, invalid=762
- 0149: dt=73.984000, rms=0.635 (0.059%), neg=0, invalid=762
- 0150: dt=73.984000, rms=0.635 (0.057%), neg=0, invalid=762
- 0151: dt=73.984000, rms=0.635 (0.053%), neg=0, invalid=762
- 0152: dt=73.984000, rms=0.634 (0.051%), neg=0, invalid=762
- 0153: dt=73.984000, rms=0.634 (0.050%), neg=0, invalid=762
- 0154: dt=73.984000, rms=0.634 (0.049%), neg=0, invalid=762
- 0155: dt=73.984000, rms=0.634 (0.045%), neg=0, invalid=762
- 0156: dt=73.984000, rms=0.633 (0.039%), neg=0, invalid=762
- 0157: dt=73.984000, rms=0.633 (0.035%), neg=0, invalid=762
- 0158: dt=73.984000, rms=0.633 (0.029%), neg=0, invalid=762
- 0159: dt=73.984000, rms=0.633 (0.031%), neg=0, invalid=762
- 0160: dt=73.984000, rms=0.632 (0.032%), neg=0, invalid=762
- 0161: dt=73.984000, rms=0.632 (0.033%), neg=0, invalid=762
- 0162: dt=73.984000, rms=0.632 (0.031%), neg=0, invalid=762
- 0163: dt=73.984000, rms=0.632 (0.028%), neg=0, invalid=762
- 0164: dt=73.984000, rms=0.632 (0.027%), neg=0, invalid=762
- 0165: dt=73.984000, rms=0.632 (0.026%), neg=0, invalid=762
- 0166: dt=73.984000, rms=0.631 (0.026%), neg=0, invalid=762
- 0167: dt=73.984000, rms=0.631 (0.025%), neg=0, invalid=762
- 0168: dt=73.984000, rms=0.631 (0.024%), neg=0, invalid=762
- 0169: dt=73.984000, rms=0.631 (0.026%), neg=0, invalid=762
- 0170: dt=73.984000, rms=0.631 (0.023%), neg=0, invalid=762
- 0171: dt=73.984000, rms=0.631 (0.022%), neg=0, invalid=762
- 0172: dt=2071.552000, rms=0.630 (0.030%), neg=0, invalid=762
- 0173: dt=129.472000, rms=0.630 (0.037%), neg=0, invalid=762
- 0174: dt=295.936000, rms=0.630 (0.013%), neg=0, invalid=762
- 0175: dt=295.936000, rms=0.630 (-0.071%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.631, neg=0, invalid=762
- 0176: dt=129.472000, rms=0.630 (0.192%), neg=0, invalid=762
- 0177: dt=517.888000, rms=0.629 (0.131%), neg=0, invalid=762
- 0178: dt=55.488000, rms=0.629 (0.005%), neg=0, invalid=762
- 0179: dt=55.488000, rms=0.629 (0.005%), neg=0, invalid=762
- 0180: dt=55.488000, rms=0.629 (0.005%), neg=0, invalid=762
- 0181: dt=55.488000, rms=0.629 (0.007%), neg=0, invalid=762
- 0182: dt=55.488000, rms=0.629 (0.020%), neg=0, invalid=762
- 0183: dt=55.488000, rms=0.628 (0.031%), neg=0, invalid=762
- 0184: dt=55.488000, rms=0.628 (0.029%), neg=0, invalid=762
- 0185: dt=55.488000, rms=0.628 (0.025%), neg=0, invalid=762
- 0186: dt=55.488000, rms=0.628 (0.023%), neg=0, invalid=762
- 0187: dt=55.488000, rms=0.628 (0.001%), neg=0, invalid=762
- 0188: dt=55.488000, rms=0.628 (0.002%), neg=0, invalid=762
- 0189: dt=55.488000, rms=0.628 (0.005%), neg=0, invalid=762
- 0190: dt=55.488000, rms=0.628 (0.007%), neg=0, invalid=762
- 0191: dt=55.488000, rms=0.628 (0.011%), neg=0, invalid=762
- 0192: dt=55.488000, rms=0.628 (0.013%), neg=0, invalid=762
- 0193: dt=55.488000, rms=0.627 (0.017%), neg=0, invalid=762
- 0194: dt=55.488000, rms=0.627 (0.018%), neg=0, invalid=762
- 0195: dt=55.488000, rms=0.627 (0.015%), neg=0, invalid=762
- 0196: dt=55.488000, rms=0.627 (0.015%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.628, neg=0, invalid=762
- 0197: dt=156.444444, rms=0.623 (0.824%), neg=0, invalid=762
- 0198: dt=160.914286, rms=0.617 (1.073%), neg=0, invalid=762
- 0199: dt=64.196319, rms=0.613 (0.539%), neg=0, invalid=762
- 0200: dt=331.776000, rms=0.608 (0.881%), neg=0, invalid=762
- 0201: dt=65.939394, rms=0.604 (0.573%), neg=0, invalid=762
- 0202: dt=118.985915, rms=0.602 (0.379%), neg=0, invalid=762
- 0203: dt=36.288000, rms=0.601 (0.192%), neg=0, invalid=762
- 0204: dt=414.720000, rms=0.598 (0.493%), neg=0, invalid=762
- 0205: dt=76.651163, rms=0.595 (0.479%), neg=0, invalid=762
- 0206: dt=36.288000, rms=0.594 (0.157%), neg=0, invalid=762
- 0207: dt=248.832000, rms=0.593 (0.218%), neg=0, invalid=762
- 0208: dt=65.684211, rms=0.591 (0.238%), neg=0, invalid=762
- 0209: dt=103.680000, rms=0.591 (0.097%), neg=0, invalid=762
- 0210: dt=82.944000, rms=0.590 (0.137%), neg=0, invalid=762
- 0211: dt=82.944000, rms=0.590 (0.086%), neg=0, invalid=762
- 0212: dt=103.680000, rms=0.589 (0.106%), neg=0, invalid=762
- 0213: dt=62.208000, rms=0.588 (0.096%), neg=0, invalid=762
- 0214: dt=145.152000, rms=0.588 (0.119%), neg=0, invalid=762
- 0215: dt=62.208000, rms=0.587 (0.098%), neg=0, invalid=762
- 0216: dt=145.152000, rms=0.586 (0.113%), neg=0, invalid=762
- 0217: dt=62.208000, rms=0.586 (0.085%), neg=0, invalid=762
- 0218: dt=145.152000, rms=0.585 (0.090%), neg=0, invalid=762
- 0219: dt=36.288000, rms=0.585 (0.079%), neg=0, invalid=762
- 0220: dt=414.720000, rms=0.584 (0.189%), neg=0, invalid=762
- 0221: dt=36.288000, rms=0.583 (0.161%), neg=0, invalid=762
- 0222: dt=103.680000, rms=0.582 (0.065%), neg=0, invalid=762
- 0223: dt=62.208000, rms=0.582 (0.071%), neg=0, invalid=762
- 0224: dt=124.416000, rms=0.582 (0.057%), neg=0, invalid=762
- 0225: dt=62.208000, rms=0.581 (0.073%), neg=0, invalid=762
- 0226: dt=103.680000, rms=0.581 (0.047%), neg=0, invalid=762
- 0227: dt=103.680000, rms=0.581 (0.061%), neg=0, invalid=762
- 0228: dt=103.680000, rms=0.580 (0.157%), neg=0, invalid=762
- 0229: dt=103.680000, rms=0.579 (0.114%), neg=0, invalid=762
- 0230: dt=103.680000, rms=0.578 (0.255%), neg=0, invalid=762
- 0231: dt=103.680000, rms=0.576 (0.214%), neg=0, invalid=762
- 0232: dt=103.680000, rms=0.575 (0.204%), neg=0, invalid=762
- 0233: dt=103.680000, rms=0.574 (0.262%), neg=0, invalid=762
- 0234: dt=103.680000, rms=0.573 (0.213%), neg=0, invalid=762
- 0235: dt=103.680000, rms=0.571 (0.239%), neg=0, invalid=762
- 0236: dt=103.680000, rms=0.570 (0.189%), neg=0, invalid=762
- 0237: dt=103.680000, rms=0.569 (0.199%), neg=0, invalid=762
- 0238: dt=103.680000, rms=0.568 (0.238%), neg=0, invalid=762
- 0239: dt=103.680000, rms=0.566 (0.199%), neg=0, invalid=762
- 0240: dt=103.680000, rms=0.565 (0.179%), neg=0, invalid=762
- 0241: dt=103.680000, rms=0.564 (0.178%), neg=0, invalid=762
- 0242: dt=103.680000, rms=0.563 (0.169%), neg=0, invalid=762
- 0243: dt=103.680000, rms=0.563 (0.161%), neg=0, invalid=762
- 0244: dt=103.680000, rms=0.562 (0.150%), neg=0, invalid=762
- 0245: dt=103.680000, rms=0.561 (0.139%), neg=0, invalid=762
- 0246: dt=103.680000, rms=0.560 (0.145%), neg=0, invalid=762
- 0247: dt=103.680000, rms=0.559 (0.126%), neg=0, invalid=762
- 0248: dt=103.680000, rms=0.559 (0.112%), neg=0, invalid=762
- 0249: dt=103.680000, rms=0.558 (0.114%), neg=0, invalid=762
- 0250: dt=103.680000, rms=0.558 (0.111%), neg=0, invalid=762
- 0251: dt=103.680000, rms=0.557 (0.097%), neg=0, invalid=762
- 0252: dt=103.680000, rms=0.556 (0.091%), neg=0, invalid=762
- 0253: dt=103.680000, rms=0.556 (0.093%), neg=0, invalid=762
- 0254: dt=103.680000, rms=0.556 (0.005%), neg=0, invalid=762
- 0255: dt=103.680000, rms=0.556 (0.025%), neg=0, invalid=762
- 0256: dt=103.680000, rms=0.556 (0.030%), neg=0, invalid=762
- 0257: dt=103.680000, rms=0.555 (0.029%), neg=0, invalid=762
- 0258: dt=51.840000, rms=0.555 (0.007%), neg=0, invalid=762
- 0259: dt=51.840000, rms=0.555 (0.007%), neg=0, invalid=762
- 0260: dt=9.072000, rms=0.555 (0.001%), neg=0, invalid=762
- 0261: dt=0.567000, rms=0.555 (0.000%), neg=0, invalid=762
- 0262: dt=0.141750, rms=0.555 (0.000%), neg=0, invalid=762
- 0263: dt=0.070875, rms=0.555 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.556, neg=0, invalid=762
- 0264: dt=124.416000, rms=0.554 (0.462%), neg=0, invalid=762
- 0265: dt=124.416000, rms=0.553 (0.175%), neg=0, invalid=762
- 0266: dt=82.944000, rms=0.552 (0.072%), neg=0, invalid=762
- 0267: dt=124.416000, rms=0.552 (0.078%), neg=0, invalid=762
- 0268: dt=62.208000, rms=0.552 (0.052%), neg=0, invalid=762
- 0269: dt=145.152000, rms=0.551 (0.056%), neg=0, invalid=762
- 0270: dt=103.680000, rms=0.551 (0.048%), neg=0, invalid=762
- 0271: dt=103.680000, rms=0.551 (0.013%), neg=0, invalid=762
- 0272: dt=103.680000, rms=0.550 (0.094%), neg=0, invalid=762
- 0273: dt=103.680000, rms=0.550 (0.074%), neg=0, invalid=762
- 0274: dt=103.680000, rms=0.549 (0.087%), neg=0, invalid=762
- 0275: dt=103.680000, rms=0.549 (0.067%), neg=0, invalid=762
- 0276: dt=103.680000, rms=0.549 (0.098%), neg=0, invalid=762
- 0277: dt=103.680000, rms=0.548 (0.086%), neg=0, invalid=762
- 0278: dt=103.680000, rms=0.548 (0.069%), neg=0, invalid=762
- 0279: dt=103.680000, rms=0.547 (0.079%), neg=0, invalid=762
- 0280: dt=103.680000, rms=0.547 (0.075%), neg=0, invalid=762
- 0281: dt=103.680000, rms=0.547 (0.068%), neg=0, invalid=762
- 0282: dt=103.680000, rms=0.546 (0.059%), neg=0, invalid=762
- 0283: dt=103.680000, rms=0.546 (0.071%), neg=0, invalid=762
- 0284: dt=103.680000, rms=0.545 (0.069%), neg=0, invalid=762
- 0285: dt=103.680000, rms=0.545 (0.057%), neg=0, invalid=762
- 0286: dt=103.680000, rms=0.545 (0.051%), neg=0, invalid=762
- 0287: dt=103.680000, rms=0.545 (0.059%), neg=0, invalid=762
- 0288: dt=103.680000, rms=0.544 (0.056%), neg=0, invalid=762
- 0289: dt=103.680000, rms=0.544 (0.060%), neg=0, invalid=762
- 0290: dt=103.680000, rms=0.544 (0.057%), neg=0, invalid=762
- 0291: dt=103.680000, rms=0.543 (0.048%), neg=0, invalid=762
- 0292: dt=103.680000, rms=0.543 (0.048%), neg=0, invalid=762
- 0293: dt=103.680000, rms=0.543 (0.048%), neg=0, invalid=762
- 0294: dt=103.680000, rms=0.543 (0.053%), neg=0, invalid=762
- 0295: dt=103.680000, rms=0.542 (0.060%), neg=0, invalid=762
- 0296: dt=103.680000, rms=0.542 (0.067%), neg=0, invalid=762
- 0297: dt=103.680000, rms=0.542 (0.060%), neg=0, invalid=762
- 0298: dt=103.680000, rms=0.541 (0.056%), neg=0, invalid=762
- 0299: dt=103.680000, rms=0.541 (0.037%), neg=0, invalid=762
- 0300: dt=103.680000, rms=0.541 (0.045%), neg=0, invalid=762
- 0301: dt=103.680000, rms=0.541 (0.043%), neg=0, invalid=762
- 0302: dt=103.680000, rms=0.540 (0.043%), neg=0, invalid=762
- 0303: dt=103.680000, rms=0.540 (0.042%), neg=0, invalid=762
- 0304: dt=103.680000, rms=0.540 (0.037%), neg=0, invalid=762
- 0305: dt=103.680000, rms=0.540 (0.034%), neg=0, invalid=762
- 0306: dt=103.680000, rms=0.539 (0.040%), neg=0, invalid=762
- 0307: dt=103.680000, rms=0.539 (0.041%), neg=0, invalid=762
- 0308: dt=103.680000, rms=0.539 (0.038%), neg=0, invalid=762
- 0309: dt=103.680000, rms=0.539 (0.039%), neg=0, invalid=762
- 0310: dt=103.680000, rms=0.539 (0.043%), neg=0, invalid=762
- 0311: dt=103.680000, rms=0.538 (0.037%), neg=0, invalid=762
- 0312: dt=103.680000, rms=0.538 (0.032%), neg=0, invalid=762
- 0313: dt=103.680000, rms=0.538 (0.028%), neg=0, invalid=762
- 0314: dt=103.680000, rms=0.538 (0.030%), neg=0, invalid=762
- 0315: dt=103.680000, rms=0.538 (0.035%), neg=0, invalid=762
- 0316: dt=103.680000, rms=0.538 (0.031%), neg=0, invalid=762
- 0317: dt=103.680000, rms=0.537 (0.028%), neg=0, invalid=762
- 0318: dt=103.680000, rms=0.537 (0.031%), neg=0, invalid=762
- 0319: dt=103.680000, rms=0.537 (0.034%), neg=0, invalid=762
- 0320: dt=103.680000, rms=0.537 (0.028%), neg=0, invalid=762
- 0321: dt=103.680000, rms=0.537 (0.026%), neg=0, invalid=762
- 0322: dt=103.680000, rms=0.537 (0.029%), neg=0, invalid=762
- 0323: dt=103.680000, rms=0.536 (0.024%), neg=0, invalid=762
- 0324: dt=103.680000, rms=0.536 (0.025%), neg=0, invalid=762
- 0325: dt=103.680000, rms=0.536 (0.023%), neg=0, invalid=762
- 0326: dt=124.416000, rms=0.536 (0.006%), neg=0, invalid=762
- 0327: dt=124.416000, rms=0.536 (-0.003%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.545, neg=0, invalid=762
- 0328: dt=25.600000, rms=0.543 (0.340%), neg=0, invalid=762
- 0329: dt=44.800000, rms=0.542 (0.220%), neg=0, invalid=762
- 0330: dt=44.800000, rms=0.540 (0.345%), neg=0, invalid=762
- 0331: dt=38.400000, rms=0.538 (0.284%), neg=0, invalid=762
- 0332: dt=0.700000, rms=0.538 (0.003%), neg=0, invalid=762
- 0333: dt=0.700000, rms=0.538 (0.005%), neg=0, invalid=762
- 0334: dt=0.175000, rms=0.538 (0.002%), neg=0, invalid=762
- 0335: dt=0.087500, rms=0.538 (0.000%), neg=0, invalid=762
- 0336: dt=0.010937, rms=0.538 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.539, neg=0, invalid=762
- 0337: dt=74.295652, rms=0.534 (0.852%), neg=0, invalid=762
- 0338: dt=44.800000, rms=0.532 (0.460%), neg=0, invalid=762
- 0339: dt=32.000000, rms=0.530 (0.277%), neg=0, invalid=762
- 0340: dt=44.800000, rms=0.529 (0.254%), neg=0, invalid=762
- 0341: dt=32.000000, rms=0.528 (0.215%), neg=0, invalid=762
- 0342: dt=38.400000, rms=0.527 (0.199%), neg=0, invalid=762
- 0343: dt=32.000000, rms=0.526 (0.174%), neg=0, invalid=762
- 0344: dt=32.000000, rms=0.525 (0.171%), neg=0, invalid=762
- 0345: dt=38.400000, rms=0.524 (0.142%), neg=0, invalid=762
- 0346: dt=32.000000, rms=0.524 (0.161%), neg=0, invalid=762
- 0347: dt=32.000000, rms=0.523 (0.134%), neg=0, invalid=762
- 0348: dt=32.000000, rms=0.522 (0.120%), neg=0, invalid=762
- 0349: dt=32.000000, rms=0.522 (0.118%), neg=0, invalid=762
- 0350: dt=32.000000, rms=0.521 (0.115%), neg=0, invalid=762
- 0351: dt=38.400000, rms=0.520 (0.107%), neg=0, invalid=762
- 0352: dt=25.600000, rms=0.520 (0.114%), neg=0, invalid=762
- 0353: dt=44.800000, rms=0.519 (0.111%), neg=0, invalid=762
- 0354: dt=25.600000, rms=0.519 (0.099%), neg=0, invalid=762
- 0355: dt=44.800000, rms=0.518 (0.104%), neg=0, invalid=762
- 0356: dt=25.600000, rms=0.518 (0.093%), neg=0, invalid=762
- 0357: dt=44.800000, rms=0.517 (0.092%), neg=0, invalid=762
- 0358: dt=25.600000, rms=0.517 (0.087%), neg=0, invalid=762
- 0359: dt=44.800000, rms=0.516 (0.085%), neg=0, invalid=762
- 0360: dt=25.600000, rms=0.516 (0.077%), neg=0, invalid=762
- 0361: dt=38.400000, rms=0.516 (0.075%), neg=0, invalid=762
- 0362: dt=25.600000, rms=0.515 (0.075%), neg=0, invalid=762
- 0363: dt=44.800000, rms=0.515 (0.065%), neg=0, invalid=762
- 0364: dt=25.600000, rms=0.514 (0.069%), neg=0, invalid=762
- 0365: dt=32.000000, rms=0.514 (0.059%), neg=0, invalid=762
- 0366: dt=32.000000, rms=0.514 (0.059%), neg=0, invalid=762
- 0367: dt=25.600000, rms=0.514 (0.049%), neg=0, invalid=762
- 0368: dt=25.600000, rms=0.513 (0.054%), neg=0, invalid=762
- 0369: dt=25.600000, rms=0.513 (0.081%), neg=0, invalid=762
- 0370: dt=25.600000, rms=0.512 (0.124%), neg=0, invalid=762
- 0371: dt=25.600000, rms=0.511 (0.159%), neg=0, invalid=762
- 0372: dt=25.600000, rms=0.511 (0.163%), neg=0, invalid=762
- 0373: dt=25.600000, rms=0.510 (0.178%), neg=0, invalid=762
- 0374: dt=25.600000, rms=0.509 (0.192%), neg=0, invalid=762
- 0375: dt=25.600000, rms=0.508 (0.203%), neg=0, invalid=762
- 0376: dt=25.600000, rms=0.507 (0.188%), neg=0, invalid=762
- 0377: dt=25.600000, rms=0.506 (0.186%), neg=0, invalid=762
- 0378: dt=25.600000, rms=0.505 (0.183%), neg=0, invalid=762
- 0379: dt=25.600000, rms=0.504 (0.177%), neg=0, invalid=762
- 0380: dt=25.600000, rms=0.503 (0.149%), neg=0, invalid=762
- 0381: dt=25.600000, rms=0.503 (0.140%), neg=0, invalid=762
- 0382: dt=25.600000, rms=0.503 (0.009%), neg=0, invalid=762
- 0383: dt=25.600000, rms=0.502 (0.010%), neg=0, invalid=762
- 0384: dt=6.400000, rms=0.502 (0.001%), neg=0, invalid=762
- 0385: dt=2.800000, rms=0.502 (0.001%), neg=0, invalid=762
- 0386: dt=0.175000, rms=0.502 (0.002%), neg=0, invalid=762
- 0387: dt=0.043750, rms=0.502 (0.000%), neg=0, invalid=762
- 0388: dt=0.005469, rms=0.502 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.520, neg=0, invalid=762
- 0389: dt=0.000000, rms=0.519 (0.132%), neg=0, invalid=762
- 0390: dt=0.000000, rms=0.519 (0.000%), neg=0, invalid=762
- 0391: dt=0.150000, rms=0.519 (-0.022%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.520, neg=0, invalid=762
- 0392: dt=0.000000, rms=0.519 (0.132%), neg=0, invalid=762
- 0393: dt=0.000000, rms=0.519 (0.000%), neg=0, invalid=762
- 0394: dt=0.150000, rms=0.519 (-0.022%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.554, neg=0, invalid=762
- 0395: dt=0.448000, rms=0.552 (0.239%), neg=0, invalid=762
- 0396: dt=0.256000, rms=0.552 (0.015%), neg=0, invalid=762
- 0397: dt=0.256000, rms=0.552 (-0.015%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.553, neg=0, invalid=762
- 0398: dt=0.448000, rms=0.552 (0.170%), neg=0, invalid=762
- 0399: dt=0.080000, rms=0.552 (0.002%), neg=0, invalid=762
- 0400: dt=0.080000, rms=0.552 (-0.001%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.506, neg=0, invalid=762
- 0401: dt=0.448000, rms=0.492 (2.873%), neg=0, invalid=762
- 0402: dt=0.448000, rms=0.489 (0.509%), neg=0, invalid=762
- 0403: dt=0.448000, rms=0.488 (0.289%), neg=0, invalid=762
- 0404: dt=0.566667, rms=0.487 (0.216%), neg=0, invalid=762
- 0405: dt=0.448000, rms=0.486 (0.113%), neg=0, invalid=762
- 0406: dt=0.448000, rms=0.486 (0.082%), neg=0, invalid=762
- 0407: dt=0.448000, rms=0.485 (0.069%), neg=0, invalid=762
- 0408: dt=0.448000, rms=0.485 (0.049%), neg=0, invalid=762
- 0409: dt=0.448000, rms=0.485 (0.045%), neg=0, invalid=762
- 0410: dt=0.448000, rms=0.485 (0.070%), neg=0, invalid=762
- 0411: dt=0.448000, rms=0.484 (0.027%), neg=0, invalid=762
- 0412: dt=0.448000, rms=0.484 (0.019%), neg=0, invalid=762
- 0413: dt=0.448000, rms=0.484 (0.037%), neg=0, invalid=762
- 0414: dt=0.448000, rms=0.484 (0.014%), neg=0, invalid=762
- 0415: dt=0.448000, rms=0.484 (0.026%), neg=0, invalid=762
- 0416: dt=0.448000, rms=0.484 (0.008%), neg=0, invalid=762
- 0417: dt=0.448000, rms=0.484 (0.009%), neg=0, invalid=762
- 0418: dt=0.448000, rms=0.484 (0.014%), neg=0, invalid=762
- 0419: dt=0.448000, rms=0.484 (0.019%), neg=0, invalid=762
- 0420: dt=0.224000, rms=0.484 (-0.000%), neg=0, invalid=762
- 0421: dt=0.320000, rms=0.484 (0.005%), neg=0, invalid=762
- 0422: dt=0.448000, rms=0.484 (0.006%), neg=0, invalid=762
- 0423: dt=0.192000, rms=0.484 (0.001%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.484, neg=0, invalid=762
- 0424: dt=0.448000, rms=0.478 (1.326%), neg=0, invalid=762
- 0425: dt=0.320000, rms=0.478 (0.085%), neg=0, invalid=762
- 0426: dt=0.448000, rms=0.477 (0.065%), neg=0, invalid=762
- 0427: dt=0.384000, rms=0.477 (0.011%), neg=0, invalid=762
- 0428: dt=0.384000, rms=0.477 (0.008%), neg=0, invalid=762
- 0429: dt=0.384000, rms=0.477 (0.012%), neg=0, invalid=762
- 0430: dt=0.384000, rms=0.477 (0.002%), neg=0, invalid=762
- 0431: dt=0.384000, rms=0.477 (-0.003%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- ********************* ALLOWING NEGATIVE NODES IN DEFORMATION********************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.476, neg=0, invalid=762
- 0432: dt=0.000000, rms=0.475 (0.155%), neg=0, invalid=762
- 0433: dt=0.000000, rms=0.475 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.476, neg=0, invalid=762
- 0434: dt=129.472000, rms=0.475 (0.173%), neg=0, invalid=762
- 0435: dt=369.920000, rms=0.475 (0.024%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0436: dt=369.920000, rms=0.475 (-0.306%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.476, neg=0, invalid=762
- 0437: dt=9.072000, rms=0.475 (0.175%), neg=0, invalid=762
- 0438: dt=6.480000, rms=0.475 (0.002%), neg=0, invalid=762
- 0439: dt=6.480000, rms=0.475 (-0.001%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.476, neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0440: dt=103.680000, rms=0.474 (0.335%), neg=0, invalid=762
- 0441: dt=36.288000, rms=0.474 (0.095%), neg=0, invalid=762
- 0442: dt=36.288000, rms=0.473 (0.041%), neg=0, invalid=762
- 0443: dt=36.288000, rms=0.473 (0.067%), neg=0, invalid=762
- 0444: dt=36.288000, rms=0.473 (0.093%), neg=0, invalid=762
- 0445: dt=36.288000, rms=0.472 (0.086%), neg=0, invalid=762
- 0446: dt=36.288000, rms=0.472 (0.085%), neg=0, invalid=762
- 0447: dt=145.152000, rms=0.472 (0.028%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.473, neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 0 iterations, nbhd size=0, neg = 0
- 0448: dt=25.347670, rms=0.470 (0.452%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0449: dt=25.600000, rms=0.470 (0.114%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0450: dt=25.600000, rms=0.470 (0.096%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0451: dt=25.600000, rms=0.469 (0.057%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 2 iterations, nbhd size=0, neg = 0
- 0452: dt=25.600000, rms=0.469 (-0.028%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.470, neg=0, invalid=762
- 0453: dt=44.800000, rms=0.465 (1.128%), neg=0, invalid=762
- 0454: dt=25.471572, rms=0.463 (0.344%), neg=0, invalid=762
- 0455: dt=25.600000, rms=0.462 (0.198%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0456: dt=25.600000, rms=0.462 (0.138%), neg=0, invalid=762
- 0457: dt=25.600000, rms=0.460 (0.257%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0458: dt=25.600000, rms=0.459 (0.238%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0459: dt=25.600000, rms=0.458 (0.296%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0460: dt=25.600000, rms=0.457 (0.183%), neg=0, invalid=762
- 0461: dt=25.600000, rms=0.456 (0.282%), neg=0, invalid=762
- 0462: dt=25.600000, rms=0.455 (0.166%), neg=0, invalid=762
- 0463: dt=25.600000, rms=0.454 (0.248%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0464: dt=25.600000, rms=0.453 (0.115%), neg=0, invalid=762
- 0465: dt=25.600000, rms=0.452 (0.227%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0466: dt=25.600000, rms=0.452 (0.106%), neg=0, invalid=762
- 0467: dt=25.600000, rms=0.451 (0.177%), neg=0, invalid=762
- 0468: dt=25.600000, rms=0.451 (0.032%), neg=0, invalid=762
- 0469: dt=25.600000, rms=0.450 (0.160%), neg=0, invalid=762
- 0470: dt=25.600000, rms=0.450 (0.041%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0471: dt=25.600000, rms=0.449 (0.122%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 2 iterations, nbhd size=0, neg = 0
- 0472: dt=25.600000, rms=0.449 (-0.008%), neg=0, invalid=762
- 0473: dt=11.200000, rms=0.449 (0.011%), neg=0, invalid=762
- 0474: dt=44.800000, rms=0.449 (0.013%), neg=0, invalid=762
- 0475: dt=38.400000, rms=0.449 (0.011%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.454, neg=0, invalid=762
- 0476: dt=0.000000, rms=0.453 (0.160%), neg=0, invalid=762
- 0477: dt=0.000000, rms=0.453 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.454, neg=0, invalid=762
- 0478: dt=1.250000, rms=0.453 (0.168%), neg=0, invalid=762
- 0479: dt=1.008000, rms=0.453 (0.007%), neg=0, invalid=762
- 0480: dt=1.008000, rms=0.453 (0.000%), neg=0, invalid=762
- 0481: dt=1.008000, rms=0.453 (-0.007%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.461, neg=0, invalid=762
- 0482: dt=0.448000, rms=0.460 (0.200%), neg=0, invalid=762
- 0483: dt=0.256000, rms=0.460 (0.009%), neg=0, invalid=762
- 0484: dt=0.256000, rms=0.460 (-0.005%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.460, neg=0, invalid=762
- 0485: dt=1.536000, rms=0.459 (0.361%), neg=0, invalid=762
- 0486: dt=0.768000, rms=0.459 (0.027%), neg=0, invalid=762
- 0487: dt=0.768000, rms=0.458 (0.002%), neg=0, invalid=762
- 0488: dt=0.768000, rms=0.458 (-0.049%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.453, neg=0, invalid=762
- iter 0, gcam->neg = 613
- after 14 iterations, nbhd size=1, neg = 0
- 0489: dt=2.283391, rms=0.421 (7.231%), neg=0, invalid=762
- 0490: dt=0.080000, rms=0.420 (0.069%), neg=0, invalid=762
- 0491: dt=0.080000, rms=0.420 (-0.058%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.421, neg=0, invalid=762
- 0492: dt=0.096000, rms=0.420 (0.275%), neg=0, invalid=762
- 0493: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=762
- 0494: dt=0.050000, rms=0.420 (-0.021%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- label assignment complete, 0 changed (0.00%)
- ***************** morphing with label term set to 0 *******************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.405, neg=0, invalid=762
- 0495: dt=0.000000, rms=0.405 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.405, neg=0, invalid=762
- 0496: dt=0.027094, rms=0.405 (0.000%), neg=0, invalid=762
- 0497: dt=0.000000, rms=0.405 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.405, neg=0, invalid=762
- 0498: dt=0.000000, rms=0.405 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.405, neg=0, invalid=762
- 0499: dt=25.920000, rms=0.405 (0.011%), neg=0, invalid=762
- 0500: dt=31.104000, rms=0.405 (0.004%), neg=0, invalid=762
- 0501: dt=31.104000, rms=0.405 (0.005%), neg=0, invalid=762
- 0502: dt=31.104000, rms=0.405 (0.005%), neg=0, invalid=762
- 0503: dt=31.104000, rms=0.405 (0.002%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.406, neg=0, invalid=762
- 0504: dt=6.400000, rms=0.406 (0.021%), neg=0, invalid=762
- 0505: dt=0.600000, rms=0.406 (0.000%), neg=0, invalid=762
- 0506: dt=0.600000, rms=0.406 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.406, neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 7 iterations, nbhd size=1, neg = 0
- 0507: dt=86.686567, rms=0.404 (0.463%), neg=0, invalid=762
- 0508: dt=32.000000, rms=0.403 (0.168%), neg=0, invalid=762
- 0509: dt=32.000000, rms=0.403 (0.084%), neg=0, invalid=762
- 0510: dt=32.000000, rms=0.403 (0.112%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0511: dt=32.000000, rms=0.402 (0.147%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 0 iterations, nbhd size=0, neg = 0
- 0512: dt=32.000000, rms=0.402 (0.123%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0513: dt=32.000000, rms=0.401 (0.125%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 5 iterations, nbhd size=0, neg = 0
- 0514: dt=32.000000, rms=0.401 (0.104%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0515: dt=32.000000, rms=0.400 (0.099%), neg=0, invalid=762
- 0516: dt=25.600000, rms=0.400 (0.012%), neg=0, invalid=762
- 0517: dt=25.600000, rms=0.400 (0.009%), neg=0, invalid=762
- 0518: dt=25.600000, rms=0.400 (0.013%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 12 iterations, nbhd size=1, neg = 0
- 0519: dt=25.600000, rms=0.400 (0.018%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 3 iterations, nbhd size=0, neg = 0
- 0520: dt=25.600000, rms=0.400 (0.016%), neg=0, invalid=762
- 0521: dt=25.600000, rms=0.400 (0.018%), neg=0, invalid=762
- 0522: dt=25.600000, rms=0.400 (0.018%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0523: dt=25.600000, rms=0.400 (0.028%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0524: dt=25.600000, rms=0.400 (0.033%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 9 iterations, nbhd size=1, neg = 0
- 0525: dt=25.600000, rms=0.399 (0.026%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.403, neg=0, invalid=762
- 0526: dt=0.000176, rms=0.403 (0.000%), neg=0, invalid=762
- 0527: dt=0.000000, rms=0.403 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.403, neg=0, invalid=762
- 0528: dt=6.500000, rms=0.403 (0.045%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0529: dt=10.370370, rms=0.403 (0.040%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 2 iterations, nbhd size=0, neg = 0
- 0530: dt=10.370370, rms=0.402 (0.066%), neg=0, invalid=762
- iter 0, gcam->neg = 8
- after 6 iterations, nbhd size=0, neg = 0
- 0531: dt=10.370370, rms=0.402 (0.083%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 8 iterations, nbhd size=0, neg = 0
- 0532: dt=10.370370, rms=0.402 (0.099%), neg=0, invalid=762
- iter 0, gcam->neg = 12
- after 4 iterations, nbhd size=0, neg = 0
- 0533: dt=10.370370, rms=0.401 (0.151%), neg=0, invalid=762
- iter 0, gcam->neg = 19
- after 7 iterations, nbhd size=0, neg = 0
- 0534: dt=10.370370, rms=0.400 (0.203%), neg=0, invalid=762
- iter 0, gcam->neg = 12
- after 10 iterations, nbhd size=0, neg = 0
- 0535: dt=10.370370, rms=0.399 (0.186%), neg=0, invalid=762
- iter 0, gcam->neg = 8
- after 9 iterations, nbhd size=0, neg = 0
- 0536: dt=10.370370, rms=0.399 (0.100%), neg=0, invalid=762
- iter 0, gcam->neg = 15
- after 7 iterations, nbhd size=0, neg = 0
- 0537: dt=10.370370, rms=0.399 (-0.004%), neg=0, invalid=762
- 0538: dt=0.000984, rms=0.399 (0.000%), neg=0, invalid=762
- 0539: dt=0.000028, rms=0.399 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.405, neg=0, invalid=762
- 0540: dt=0.000000, rms=0.405 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.405, neg=0, invalid=762
- 0541: dt=0.000000, rms=0.405 (0.000%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.395, neg=0, invalid=762
- iter 0, gcam->neg = 586
- after 15 iterations, nbhd size=1, neg = 0
- 0542: dt=1.466331, rms=0.383 (2.962%), neg=0, invalid=762
- 0543: dt=0.000013, rms=0.383 (0.000%), neg=0, invalid=762
- 0544: dt=0.000013, rms=0.383 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.383, neg=0, invalid=762
- 0545: dt=0.064000, rms=0.383 (0.029%), neg=0, invalid=762
- 0546: dt=0.020000, rms=0.383 (0.002%), neg=0, invalid=762
- 0547: dt=0.020000, rms=0.383 (-0.001%), neg=0, invalid=762
- writing output transformation to transforms/talairach.m3z...
- GCAMwrite
- mri_ca_register took 2 hours, 48 minutes and 18 seconds.
- mri_ca_register utimesec 11043.585119
- mri_ca_register stimesec 9.267591
- mri_ca_register ru_maxrss 1336264
- mri_ca_register ru_ixrss 0
- mri_ca_register ru_idrss 0
- mri_ca_register ru_isrss 0
- mri_ca_register ru_minflt 5577167
- mri_ca_register ru_majflt 0
- mri_ca_register ru_nswap 0
- mri_ca_register ru_inblock 0
- mri_ca_register ru_oublock 63232
- mri_ca_register ru_msgsnd 0
- mri_ca_register ru_msgrcv 0
- mri_ca_register ru_nsignals 0
- mri_ca_register ru_nvcsw 3396
- mri_ca_register ru_nivcsw 17962
- FSRUNTIME@ mri_ca_register 2.8049 hours 2 threads
- #--------------------------------------
- #@# SubCort Seg Sat Oct 7 20:14:41 CEST 2017
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- sysname Linux
- hostname tars-963
- machine x86_64
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- == Number of threads available to mri_ca_label for OpenMP = 2 ==
- relabeling unlikely voxels with window_size = 9 and prior threshold 0.30
- using Gibbs prior factor = 0.500
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -renormalize_mean 0.500
- -regularize 0.500
- reading 1 input volumes
- reading classifier array from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- reading input volume from norm.mgz
- average std[0] = 7.3
- reading transform from transforms/talairach.m3z
- setting orig areas to linear transform determinant scaled 7.39
- Atlas used for the 3D morph was /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 0 ill-conditioned covariance matrices regularized
- labeling volume...
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.16259 (20)
- mri peak = 0.09050 (14)
- Left_Lateral_Ventricle (4): linear fit = 0.81 x + 0.0 (6144 voxels, overlap=0.850)
- Left_Lateral_Ventricle (4): linear fit = 0.81 x + 0.0 (6144 voxels, peak = 16), gca=16.3
- gca peak = 0.17677 (13)
- mri peak = 0.09312 (22)
- Right_Lateral_Ventricle (43): linear fit = 1.12 x + 0.0 (2997 voxels, overlap=0.918)
- Right_Lateral_Ventricle (43): linear fit = 1.12 x + 0.0 (2997 voxels, peak = 14), gca=14.5
- gca peak = 0.28129 (95)
- mri peak = 0.08257 (95)
- Right_Pallidum (52): linear fit = 0.98 x + 0.0 (574 voxels, overlap=1.015)
- Right_Pallidum (52): linear fit = 0.98 x + 0.0 (574 voxels, peak = 93), gca=92.6
- gca peak = 0.16930 (96)
- mri peak = 0.08644 (94)
- Left_Pallidum (13): linear fit = 0.99 x + 0.0 (585 voxels, overlap=1.014)
- Left_Pallidum (13): linear fit = 0.99 x + 0.0 (585 voxels, peak = 95), gca=94.6
- gca peak = 0.24553 (55)
- mri peak = 0.10412 (63)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (837 voxels, overlap=0.962)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (837 voxels, peak = 57), gca=57.5
- gca peak = 0.30264 (59)
- mri peak = 0.07447 (59)
- Left_Hippocampus (17): linear fit = 1.02 x + 0.0 (680 voxels, overlap=1.015)
- Left_Hippocampus (17): linear fit = 1.02 x + 0.0 (680 voxels, peak = 60), gca=60.5
- gca peak = 0.07580 (103)
- mri peak = 0.07589 (106)
- Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (35036 voxels, overlap=0.693)
- Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (35036 voxels, peak = 107), gca=106.6
- gca peak = 0.07714 (104)
- mri peak = 0.07567 (106)
- Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (33765 voxels, overlap=0.704)
- Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (33765 voxels, peak = 108), gca=107.6
- gca peak = 0.09712 (58)
- mri peak = 0.04646 (60)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (23036 voxels, overlap=0.986)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (23036 voxels, peak = 59), gca=59.4
- gca peak = 0.11620 (58)
- mri peak = 0.04918 (59)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (23668 voxels, overlap=0.971)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (23668 voxels, peak = 59), gca=59.4
- gca peak = 0.30970 (66)
- mri peak = 0.08755 (74)
- Right_Caudate (50): linear fit = 1.11 x + 0.0 (1378 voxels, overlap=1.008)
- Right_Caudate (50): linear fit = 1.11 x + 0.0 (1378 voxels, peak = 73), gca=72.9
- gca peak = 0.15280 (69)
- mri peak = 0.09257 (72)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1372 voxels, overlap=1.002)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1372 voxels, peak = 69), gca=69.0
- gca peak = 0.13902 (56)
- mri peak = 0.05027 (57)
- Left_Cerebellum_Cortex (8): linear fit = 1.04 x + 0.0 (11150 voxels, overlap=0.993)
- Left_Cerebellum_Cortex (8): linear fit = 1.04 x + 0.0 (11150 voxels, peak = 59), gca=58.5
- gca peak = 0.14777 (55)
- mri peak = 0.05831 (61)
- Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (12470 voxels, overlap=0.820)
- Right_Cerebellum_Cortex (47): linear fit = 1.12 x + 0.0 (12470 voxels, peak = 61), gca=61.3
- gca peak = 0.16765 (84)
- mri peak = 0.07634 (85)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4166 voxels, overlap=0.976)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4166 voxels, peak = 84), gca=83.6
- gca peak = 0.18739 (84)
- mri peak = 0.08136 (84)
- Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (4303 voxels, overlap=0.968)
- Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (4303 voxels, peak = 85), gca=85.3
- gca peak = 0.29869 (57)
- mri peak = 0.08571 (61)
- Left_Amygdala (18): linear fit = 1.04 x + 0.0 (497 voxels, overlap=1.040)
- Left_Amygdala (18): linear fit = 1.04 x + 0.0 (497 voxels, peak = 60), gca=59.6
- gca peak = 0.33601 (57)
- mri peak = 0.09583 (60)
- Right_Amygdala (54): linear fit = 1.12 x + 0.0 (479 voxels, overlap=0.999)
- Right_Amygdala (54): linear fit = 1.12 x + 0.0 (479 voxels, peak = 64), gca=63.6
- gca peak = 0.11131 (90)
- mri peak = 0.06539 (87)
- Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (3641 voxels, overlap=0.997)
- Left_Thalamus_Proper (10): linear fit = 0.98 x + 0.0 (3641 voxels, peak = 88), gca=87.8
- gca peak = 0.11793 (83)
- mri peak = 0.07037 (88)
- Right_Thalamus_Proper (49): linear fit = 1.04 x + 0.0 (3876 voxels, overlap=0.950)
- Right_Thalamus_Proper (49): linear fit = 1.04 x + 0.0 (3876 voxels, peak = 87), gca=86.7
- gca peak = 0.08324 (81)
- mri peak = 0.08489 (77)
- Left_Putamen (12): linear fit = 1.01 x + 0.0 (1761 voxels, overlap=0.905)
- Left_Putamen (12): linear fit = 1.01 x + 0.0 (1761 voxels, peak = 82), gca=82.2
- gca peak = 0.10360 (77)
- mri peak = 0.06729 (79)
- Right_Putamen (51): linear fit = 1.01 x + 0.0 (2022 voxels, overlap=0.903)
- Right_Putamen (51): linear fit = 1.01 x + 0.0 (2022 voxels, peak = 78), gca=78.2
- gca peak = 0.08424 (78)
- mri peak = 0.12581 (81)
- Brain_Stem (16): linear fit = 1.03 x + 0.0 (9772 voxels, overlap=0.476)
- Brain_Stem (16): linear fit = 1.03 x + 0.0 (9772 voxels, peak = 81), gca=80.7
- gca peak = 0.12631 (89)
- mri peak = 0.06750 (92)
- Right_VentralDC (60): linear fit = 1.05 x + 0.0 (1141 voxels, overlap=0.786)
- Right_VentralDC (60): linear fit = 1.05 x + 0.0 (1141 voxels, peak = 94), gca=93.9
- gca peak = 0.14500 (87)
- mri peak = 0.06994 (89)
- Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1154 voxels, overlap=0.863)
- Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1154 voxels, peak = 90), gca=90.0
- gca peak = 0.14975 (24)
- mri peak = 0.08116 (22)
- gca peak = 0.19357 (14)
- mri peak = 0.09405 (21)
- Fourth_Ventricle (15): linear fit = 1.25 x + 0.0 (518 voxels, overlap=0.905)
- Fourth_Ventricle (15): linear fit = 1.25 x + 0.0 (518 voxels, peak = 17), gca=17.4
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.16825 (27)
- gca peak Left_Thalamus = 1.00000 (94)
- gca peak Third_Ventricle = 0.14975 (24)
- gca peak CSF = 0.23379 (36)
- gca peak Left_Accumbens_area = 0.70037 (62)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.75997 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.24655 (23)
- gca peak Right_Accumbens_area = 0.45042 (65)
- gca peak Right_vessel = 0.82168 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.65475 (32)
- gca peak WM_hypointensities = 0.07854 (76)
- gca peak non_WM_hypointensities = 0.08491 (43)
- gca peak Optic_Chiasm = 0.71127 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.05 x + 0.0
- estimating mean wm scale to be 1.03 x + 0.0
- estimating mean csf scale to be 1.06 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.17169 (17)
- mri peak = 0.09050 (14)
- Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (6144 voxels, overlap=0.969)
- Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (6144 voxels, peak = 18), gca=17.6
- gca peak = 0.17038 (14)
- mri peak = 0.09312 (22)
- Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (2997 voxels, overlap=0.824)
- Right_Lateral_Ventricle (43): linear fit = 1.03 x + 0.0 (2997 voxels, peak = 14), gca=14.5
- gca peak = 0.25833 (91)
- mri peak = 0.08257 (95)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (574 voxels, overlap=1.011)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (574 voxels, peak = 91), gca=90.5
- gca peak = 0.20299 (95)
- mri peak = 0.08644 (94)
- Left_Pallidum (13): linear fit = 1.00 x + 0.0 (585 voxels, overlap=1.011)
- Left_Pallidum (13): linear fit = 1.00 x + 0.0 (585 voxels, peak = 95), gca=94.5
- gca peak = 0.29069 (58)
- mri peak = 0.10412 (63)
- Right_Hippocampus (53): linear fit = 1.08 x + 0.0 (837 voxels, overlap=1.008)
- Right_Hippocampus (53): linear fit = 1.08 x + 0.0 (837 voxels, peak = 62), gca=62.4
- gca peak = 0.28468 (58)
- mri peak = 0.07447 (59)
- Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (680 voxels, overlap=1.016)
- Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (680 voxels, peak = 58), gca=58.0
- gca peak = 0.07500 (106)
- mri peak = 0.07589 (106)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (35036 voxels, overlap=0.831)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (35036 voxels, peak = 106), gca=106.0
- gca peak = 0.07663 (108)
- mri peak = 0.07567 (106)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (33765 voxels, overlap=0.844)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (33765 voxels, peak = 107), gca=107.5
- gca peak = 0.09507 (59)
- mri peak = 0.04646 (60)
- Left_Cerebral_Cortex (3): linear fit = 0.96 x + 0.0 (23036 voxels, overlap=0.982)
- Left_Cerebral_Cortex (3): linear fit = 0.96 x + 0.0 (23036 voxels, peak = 57), gca=56.9
- gca peak = 0.11327 (59)
- mri peak = 0.04918 (59)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (23668 voxels, overlap=0.980)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (23668 voxels, peak = 60), gca=60.5
- gca peak = 0.26564 (73)
- mri peak = 0.08755 (74)
- Right_Caudate (50): linear fit = 0.96 x + 0.0 (1378 voxels, overlap=1.010)
- Right_Caudate (50): linear fit = 0.96 x + 0.0 (1378 voxels, peak = 70), gca=70.4
- gca peak = 0.16047 (69)
- mri peak = 0.09257 (72)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1372 voxels, overlap=1.002)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1372 voxels, peak = 69), gca=69.0
- gca peak = 0.13223 (57)
- mri peak = 0.05027 (57)
- Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (11150 voxels, overlap=1.000)
- Left_Cerebellum_Cortex (8): linear fit = 1.02 x + 0.0 (11150 voxels, peak = 58), gca=58.4
- gca peak = 0.14076 (61)
- mri peak = 0.05831 (61)
- Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (12470 voxels, overlap=0.995)
- Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (12470 voxels, peak = 63), gca=62.5
- gca peak = 0.16697 (84)
- mri peak = 0.07634 (85)
- Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (4166 voxels, overlap=0.971)
- Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (4166 voxels, peak = 85), gca=85.3
- gca peak = 0.15508 (85)
- mri peak = 0.08136 (84)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (4303 voxels, overlap=0.983)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (4303 voxels, peak = 85), gca=84.6
- gca peak = 0.31836 (61)
- mri peak = 0.08571 (61)
- Left_Amygdala (18): linear fit = 1.03 x + 0.0 (497 voxels, overlap=1.028)
- Left_Amygdala (18): linear fit = 1.03 x + 0.0 (497 voxels, peak = 63), gca=63.1
- gca peak = 0.29988 (64)
- mri peak = 0.09583 (60)
- Right_Amygdala (54): linear fit = 0.95 x + 0.0 (479 voxels, overlap=1.014)
- Right_Amygdala (54): linear fit = 0.95 x + 0.0 (479 voxels, peak = 61), gca=61.1
- gca peak = 0.11201 (86)
- mri peak = 0.06539 (87)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3641 voxels, overlap=0.973)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3641 voxels, peak = 86), gca=85.6
- gca peak = 0.09701 (90)
- mri peak = 0.07037 (88)
- Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (3876 voxels, overlap=0.996)
- Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (3876 voxels, peak = 89), gca=88.7
- gca peak = 0.08891 (82)
- mri peak = 0.08489 (77)
- Left_Putamen (12): linear fit = 1.00 x + 0.0 (1761 voxels, overlap=0.949)
- Left_Putamen (12): linear fit = 1.00 x + 0.0 (1761 voxels, peak = 82), gca=82.0
- gca peak = 0.08217 (78)
- mri peak = 0.06729 (79)
- Right_Putamen (51): linear fit = 1.00 x + 0.0 (2022 voxels, overlap=0.942)
- Right_Putamen (51): linear fit = 1.00 x + 0.0 (2022 voxels, peak = 78), gca=78.0
- gca peak = 0.08550 (81)
- mri peak = 0.12581 (81)
- Brain_Stem (16): linear fit = 1.01 x + 0.0 (9772 voxels, overlap=0.625)
- Brain_Stem (16): linear fit = 1.01 x + 0.0 (9772 voxels, peak = 82), gca=82.2
- gca peak = 0.13367 (94)
- mri peak = 0.06750 (92)
- Right_VentralDC (60): linear fit = 0.99 x + 0.0 (1141 voxels, overlap=0.841)
- Right_VentralDC (60): linear fit = 0.99 x + 0.0 (1141 voxels, peak = 93), gca=92.6
- gca peak = 0.14229 (90)
- mri peak = 0.06994 (89)
- Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1154 voxels, overlap=0.915)
- Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1154 voxels, peak = 90), gca=89.6
- gca peak = 0.16787 (27)
- mri peak = 0.08116 (22)
- gca peak = 0.16542 (20)
- mri peak = 0.09405 (21)
- Fourth_Ventricle (15): linear fit = 0.94 x + 0.0 (518 voxels, overlap=0.794)
- Fourth_Ventricle (15): linear fit = 0.94 x + 0.0 (518 voxels, peak = 19), gca=18.9
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.16555 (33)
- gca peak Left_Thalamus = 0.64095 (98)
- gca peak Third_Ventricle = 0.16787 (27)
- gca peak CSF = 0.19670 (38)
- gca peak Left_Accumbens_area = 0.70057 (62)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.75962 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.21972 (24)
- gca peak Right_Accumbens_area = 0.37965 (71)
- gca peak Right_vessel = 0.82168 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.54107 (34)
- gca peak WM_hypointensities = 0.07576 (78)
- gca peak non_WM_hypointensities = 0.08309 (45)
- gca peak Optic_Chiasm = 0.70902 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.01 x + 0.0
- estimating mean wm scale to be 1.00 x + 0.0
- estimating mean csf scale to be 1.00 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt
- 97596 voxels changed in iteration 0 of unlikely voxel relabeling
- 323 voxels changed in iteration 1 of unlikely voxel relabeling
- 4 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 43969 gm and wm labels changed (%30 to gray, %70 to white out of all changed labels)
- 481 hippocampal voxels changed.
- 0 amygdala voxels changed.
- pass 1: 89809 changed. image ll: -2.151, PF=0.500
- pass 2: 25797 changed. image ll: -2.151, PF=0.500
- pass 3: 7054 changed.
- pass 4: 2291 changed.
- 58282 voxels changed in iteration 0 of unlikely voxel relabeling
- 611 voxels changed in iteration 1 of unlikely voxel relabeling
- 31 voxels changed in iteration 2 of unlikely voxel relabeling
- 28 voxels changed in iteration 3 of unlikely voxel relabeling
- 2 voxels changed in iteration 4 of unlikely voxel relabeling
- 7045 voxels changed in iteration 0 of unlikely voxel relabeling
- 326 voxels changed in iteration 1 of unlikely voxel relabeling
- 9 voxels changed in iteration 2 of unlikely voxel relabeling
- 2 voxels changed in iteration 3 of unlikely voxel relabeling
- 0 voxels changed in iteration 4 of unlikely voxel relabeling
- 6265 voxels changed in iteration 0 of unlikely voxel relabeling
- 60 voxels changed in iteration 1 of unlikely voxel relabeling
- 0 voxels changed in iteration 2 of unlikely voxel relabeling
- 4342 voxels changed in iteration 0 of unlikely voxel relabeling
- 18 voxels changed in iteration 1 of unlikely voxel relabeling
- 0 voxels changed in iteration 2 of unlikely voxel relabeling
- MRItoUCHAR: min=0, max=85
- MRItoUCHAR: converting to UCHAR
- writing labeled volume to aseg.auto_noCCseg.mgz
- mri_ca_label utimesec 3854.271061
- mri_ca_label stimesec 2.271654
- mri_ca_label ru_maxrss 2126268
- mri_ca_label ru_ixrss 0
- mri_ca_label ru_idrss 0
- mri_ca_label ru_isrss 0
- mri_ca_label ru_minflt 676692
- mri_ca_label ru_majflt 0
- mri_ca_label ru_nswap 0
- mri_ca_label ru_inblock 0
- mri_ca_label ru_oublock 536
- mri_ca_label ru_msgsnd 0
- mri_ca_label ru_msgrcv 0
- mri_ca_label ru_nsignals 0
- mri_ca_label ru_nvcsw 315
- mri_ca_label ru_nivcsw 9005
- auto-labeling took 63 minutes and 28 seconds.
- mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/transforms/cc_up.lta 0051366
- will read input aseg from aseg.auto_noCCseg.mgz
- writing aseg with cc labels to aseg.auto.mgz
- will write lta as /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/transforms/cc_up.lta
- reading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aseg.auto_noCCseg.mgz
- reading norm from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/norm.mgz
- 36248 voxels in left wm, 48270 in right wm, xrange [123, 132]
- searching rotation angles z=[-6 8], y=[-5 9]
-
searching scale 1 Z rot -6.4
searching scale 1 Z rot -6.2
searching scale 1 Z rot -5.9
searching scale 1 Z rot -5.7
searching scale 1 Z rot -5.4
searching scale 1 Z rot -5.2
searching scale 1 Z rot -4.9
searching scale 1 Z rot -4.7
searching scale 1 Z rot -4.4
searching scale 1 Z rot -4.2
searching scale 1 Z rot -3.9
searching scale 1 Z rot -3.7
searching scale 1 Z rot -3.4
searching scale 1 Z rot -3.2
searching scale 1 Z rot -2.9
searching scale 1 Z rot -2.7
searching scale 1 Z rot -2.4
searching scale 1 Z rot -2.2
searching scale 1 Z rot -1.9
searching scale 1 Z rot -1.7
searching scale 1 Z rot -1.4
searching scale 1 Z rot -1.2
searching scale 1 Z rot -0.9
searching scale 1 Z rot -0.7
searching scale 1 Z rot -0.4
searching scale 1 Z rot -0.2
searching scale 1 Z rot 0.1
searching scale 1 Z rot 0.3
searching scale 1 Z rot 0.6
searching scale 1 Z rot 0.8
searching scale 1 Z rot 1.1
searching scale 1 Z rot 1.3
searching scale 1 Z rot 1.6
searching scale 1 Z rot 1.8
searching scale 1 Z rot 2.1
searching scale 1 Z rot 2.3
searching scale 1 Z rot 2.6
searching scale 1 Z rot 2.8
searching scale 1 Z rot 3.1
searching scale 1 Z rot 3.3
searching scale 1 Z rot 3.6
searching scale 1 Z rot 3.8
searching scale 1 Z rot 4.1
searching scale 1 Z rot 4.3
searching scale 1 Z rot 4.6
searching scale 1 Z rot 4.8
searching scale 1 Z rot 5.1
searching scale 1 Z rot 5.3
searching scale 1 Z rot 5.6
searching scale 1 Z rot 5.8
searching scale 1 Z rot 6.1
searching scale 1 Z rot 6.3
searching scale 1 Z rot 6.6
searching scale 1 Z rot 6.8
searching scale 1 Z rot 7.1 global minimum found at slice 128.0, rotations (2.40, 0.34)
- final transformation (x=128.0, yr=2.397, zr=0.336):
- 0.99911 -0.00586 0.04182 -3.81392;
- 0.00585 0.99998 0.00024 48.22647;
- -0.04182 0.00000 0.99913 28.44462;
- 0.00000 0.00000 0.00000 1.00000;
- updating x range to be [126, 130] in xformed coordinates
- best xformed slice 128
- cc center is found at 128 79 105
- eigenvectors:
- 0.00082 -0.00042 1.00000;
- 0.03530 -0.99938 -0.00045;
- 0.99938 0.03530 -0.00080;
- error in mid anterior detected - correcting...
- writing aseg with callosum to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aseg.auto.mgz...
- corpus callosum segmentation took 0.8 minutes
- #--------------------------------------
- #@# Merge ASeg Sat Oct 7 21:18:58 CEST 2017
- cp aseg.auto.mgz aseg.presurf.mgz
- #--------------------------------------------
- #@# Intensity Normalization2 Sat Oct 7 21:18:58 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- using segmentation for initial intensity normalization
- using MR volume brainmask.mgz to mask input volume...
- reading from norm.mgz...
- Reading aseg aseg.presurf.mgz
- normalizing image...
- processing with aseg
- removing outliers in the aseg WM...
- 3640 control points removed
- Building bias image
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 0...
- Smoothing with sigma 8
- Applying bias correction
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 106
- gm peak at 66 (66), valley at 28 (28)
- csf peak at 33, setting threshold to 55
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 63 (63), valley at 26 (26)
- csf peak at 32, setting threshold to 52
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to brain.mgz
- 3D bias adjustment took 3 minutes and 26 seconds.
- #--------------------------------------------
- #@# Mask BFS Sat Oct 7 21:22:26 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz
- threshold mask volume at 5
- DoAbs = 0
- Found 1761492 voxels in mask (pct= 10.50)
- Writing masked volume to brain.finalsurfs.mgz...done.
- #--------------------------------------------
- #@# WM Segmentation Sat Oct 7 21:22:27 CEST 2017
- mri_segment -mprage brain.mgz wm.seg.mgz
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- computing class statistics for intensity windows...
- WM (105.0): 106.2 +- 5.5 [79.0 --> 125.0]
- GM (69.0) : 67.2 +- 9.3 [30.0 --> 95.0]
- setting bottom of white matter range to 76.5
- setting top of gray matter range to 85.8
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- using local geometry to label remaining ambiguous voxels...
- reclassifying voxels using Gaussian border classifier...
- removing voxels with positive offset direction...
- smoothing T1 volume with sigma = 0.250
- removing 1-dimensional structures...
- 17482 sparsely connected voxels removed...
- thickening thin strands....
- 20 segments, 8377 filled
- 445 bright non-wm voxels segmented.
- 8176 diagonally connected voxels added...
- white matter segmentation took 1.7 minutes
- writing output to wm.seg.mgz...
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz
- preserving editing changes in input volume...
- auto filling took 0.53 minutes
- reading wm segmentation from wm.seg.mgz...
- 178 voxels added to wm to prevent paths from MTL structures to cortex
- 3648 additional wm voxels added
- 0 additional wm voxels added
- SEG EDIT: 79030 voxels turned on, 44611 voxels turned off.
- propagating editing to output volume from wm.seg.mgz
- 115,126,128 old 0 new 0
- 115,126,128 old 0 new 0
- writing edited volume to wm.asegedit.mgz....
- mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz
- Iteration Number : 1
- pass 1 (xy+): 23 found - 23 modified | TOTAL: 23
- pass 2 (xy+): 0 found - 23 modified | TOTAL: 23
- pass 1 (xy-): 37 found - 37 modified | TOTAL: 60
- pass 2 (xy-): 0 found - 37 modified | TOTAL: 60
- pass 1 (yz+): 28 found - 28 modified | TOTAL: 88
- pass 2 (yz+): 0 found - 28 modified | TOTAL: 88
- pass 1 (yz-): 36 found - 36 modified | TOTAL: 124
- pass 2 (yz-): 0 found - 36 modified | TOTAL: 124
- pass 1 (xz+): 31 found - 31 modified | TOTAL: 155
- pass 2 (xz+): 0 found - 31 modified | TOTAL: 155
- pass 1 (xz-): 37 found - 37 modified | TOTAL: 192
- pass 2 (xz-): 0 found - 37 modified | TOTAL: 192
- Iteration Number : 1
- pass 1 (+++): 41 found - 41 modified | TOTAL: 41
- pass 2 (+++): 0 found - 41 modified | TOTAL: 41
- pass 1 (+++): 22 found - 22 modified | TOTAL: 63
- pass 2 (+++): 0 found - 22 modified | TOTAL: 63
- pass 1 (+++): 39 found - 39 modified | TOTAL: 102
- pass 2 (+++): 0 found - 39 modified | TOTAL: 102
- pass 1 (+++): 28 found - 28 modified | TOTAL: 130
- pass 2 (+++): 0 found - 28 modified | TOTAL: 130
- Iteration Number : 1
- pass 1 (++): 253 found - 253 modified | TOTAL: 253
- pass 2 (++): 0 found - 253 modified | TOTAL: 253
- pass 1 (+-): 249 found - 249 modified | TOTAL: 502
- pass 2 (+-): 0 found - 249 modified | TOTAL: 502
- pass 1 (--): 251 found - 251 modified | TOTAL: 753
- pass 2 (--): 0 found - 251 modified | TOTAL: 753
- pass 1 (-+): 268 found - 268 modified | TOTAL: 1021
- pass 2 (-+): 0 found - 268 modified | TOTAL: 1021
- Iteration Number : 2
- pass 1 (xy+): 12 found - 12 modified | TOTAL: 12
- pass 2 (xy+): 0 found - 12 modified | TOTAL: 12
- pass 1 (xy-): 5 found - 5 modified | TOTAL: 17
- pass 2 (xy-): 0 found - 5 modified | TOTAL: 17
- pass 1 (yz+): 11 found - 11 modified | TOTAL: 28
- pass 2 (yz+): 0 found - 11 modified | TOTAL: 28
- pass 1 (yz-): 8 found - 8 modified | TOTAL: 36
- pass 2 (yz-): 0 found - 8 modified | TOTAL: 36
- pass 1 (xz+): 14 found - 14 modified | TOTAL: 50
- pass 2 (xz+): 0 found - 14 modified | TOTAL: 50
- pass 1 (xz-): 10 found - 10 modified | TOTAL: 60
- pass 2 (xz-): 0 found - 10 modified | TOTAL: 60
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 1 found - 1 modified | TOTAL: 1
- pass 2 (+++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 2
- pass 1 (++): 5 found - 5 modified | TOTAL: 5
- pass 2 (++): 0 found - 5 modified | TOTAL: 5
- pass 1 (+-): 7 found - 7 modified | TOTAL: 12
- pass 2 (+-): 0 found - 7 modified | TOTAL: 12
- pass 1 (--): 7 found - 7 modified | TOTAL: 19
- pass 2 (--): 0 found - 7 modified | TOTAL: 19
- pass 1 (-+): 3 found - 3 modified | TOTAL: 22
- pass 2 (-+): 0 found - 3 modified | TOTAL: 22
- Iteration Number : 3
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 1
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz+): 1 found - 1 modified | TOTAL: 2
- pass 2 (xz+): 0 found - 1 modified | TOTAL: 2
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 0 found - 0 modified | TOTAL: 1
- pass 1 (--): 0 found - 0 modified | TOTAL: 1
- pass 1 (-+): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 4
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 1429 (out of 592435: 0.241208)
- binarizing input wm segmentation...
- Ambiguous edge configurations...
- mri_pretess done
- #--------------------------------------------
- #@# Fill Sat Oct 7 21:24:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz
- logging cutting plane coordinates to ../scripts/ponscc.cut.log...
- INFO: Using transforms/talairach.lta and its offset for Talairach volume ...
- using segmentation aseg.auto_noCCseg.mgz...
- reading input volume...done.
- searching for cutting planes...voxel to talairach voxel transform
- 1.05037 0.00284 0.04446 -13.01639;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47143;
- 0.00000 0.00000 0.00000 1.00000;
- voxel to talairach voxel transform
- 1.05037 0.00284 0.04446 -13.01639;
- -0.00751 1.08424 0.12804 4.83018;
- -0.05446 -0.10384 0.93659 20.47143;
- 0.00000 0.00000 0.00000 1.00000;
- reading segmented volume aseg.auto_noCCseg.mgz...
- Looking for area (min, max) = (350, 1400)
- area[0] = 1770 (min = 350, max = 1400), aspect = 0.58 (min = 0.10, max = 0.75)
- need search nearby
- using seed (127, 110, 93), TAL = (1.0, -35.0, 18.0)
- talairach voxel to voxel transform
- 0.94971 -0.00672 -0.04417 13.29832;
- 0.00006 0.91038 -0.12446 -1.84871;
- 0.05523 0.10055 1.05134 -21.28926;
- 0.00000 0.00000 0.00000 1.00000;
- segmentation indicates cc at (127, 110, 93) --> (1.0, -35.0, 18.0)
- done.
- writing output to filled.mgz...
- filling took 0.7 minutes
- talairach cc position changed to (1.00, -35.00, 18.00)
- Erasing brainstem...done.
- seed_search_size = 9, min_neighbors = 5
- search rh wm seed point around talairach space:(19.00, -35.00, 18.00) SRC: (111.97, 86.72, 93.57)
- search lh wm seed point around talairach space (-17.00, -35.00, 18.00), SRC: (146.16, 86.73, 95.55)
- compute mri_fill using aseg
- Erasing Brain Stem and Cerebellum ...
- Define left and right masks using aseg:
- Building Voronoi diagram ...
- Using the Voronoi diagram to separate WM into two hemispheres ...
- Find the largest connected component for each hemisphere ...
- #--------------------------------------------
- #@# Tessellate lh Sat Oct 7 21:25:32 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz
- Iteration Number : 1
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 2 found - 2 modified | TOTAL: 2
- pass 2 (xy-): 0 found - 2 modified | TOTAL: 2
- pass 1 (yz+): 3 found - 3 modified | TOTAL: 5
- pass 2 (yz+): 0 found - 3 modified | TOTAL: 5
- pass 1 (yz-): 3 found - 3 modified | TOTAL: 8
- pass 2 (yz-): 0 found - 3 modified | TOTAL: 8
- pass 1 (xz+): 1 found - 1 modified | TOTAL: 9
- pass 2 (xz+): 0 found - 1 modified | TOTAL: 9
- pass 1 (xz-): 2 found - 2 modified | TOTAL: 11
- pass 2 (xz-): 0 found - 2 modified | TOTAL: 11
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 2 found - 2 modified | TOTAL: 2
- pass 2 (+++): 0 found - 2 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 1
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 2 found - 2 modified | TOTAL: 3
- pass 2 (+-): 0 found - 2 modified | TOTAL: 3
- pass 1 (--): 0 found - 0 modified | TOTAL: 3
- pass 1 (-+): 0 found - 0 modified | TOTAL: 3
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 16 (out of 289143: 0.005534)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 30: 549 vertices, 620 faces
- slice 40: 5599 vertices, 5845 faces
- slice 50: 13652 vertices, 13937 faces
- slice 60: 23623 vertices, 23962 faces
- slice 70: 34654 vertices, 35045 faces
- slice 80: 45944 vertices, 46354 faces
- slice 90: 57287 vertices, 57694 faces
- slice 100: 69673 vertices, 70141 faces
- slice 110: 82537 vertices, 83011 faces
- slice 120: 94667 vertices, 95106 faces
- slice 130: 106675 vertices, 107134 faces
- slice 140: 117821 vertices, 118293 faces
- slice 150: 127683 vertices, 128124 faces
- slice 160: 136336 vertices, 136703 faces
- slice 170: 143488 vertices, 143865 faces
- slice 180: 150449 vertices, 150790 faces
- slice 190: 156428 vertices, 156733 faces
- slice 200: 160041 vertices, 160221 faces
- slice 210: 160210 vertices, 160334 faces
- slice 220: 160210 vertices, 160334 faces
- slice 230: 160210 vertices, 160334 faces
- slice 240: 160210 vertices, 160334 faces
- slice 250: 160210 vertices, 160334 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/lh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess255.mgz
- mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix
- counting number of connected components...
- 160210 voxel in cpt #1: X=-124 [v=160210,e=481002,f=320668] located at (-27.248692, -19.313339, 39.338867)
- For the whole surface: X=-124 [v=160210,e=481002,f=320668]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Tessellate rh Sat Oct 7 21:25:37 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz
- Iteration Number : 1
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 5 found - 5 modified | TOTAL: 5
- pass 2 (yz+): 0 found - 5 modified | TOTAL: 5
- pass 1 (yz-): 2 found - 2 modified | TOTAL: 7
- pass 2 (yz-): 0 found - 2 modified | TOTAL: 7
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 7
- pass 1 (xz-): 1 found - 1 modified | TOTAL: 8
- pass 2 (xz-): 0 found - 1 modified | TOTAL: 8
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 1
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 8 (out of 282811: 0.002829)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 30: 694 vertices, 786 faces
- slice 40: 6234 vertices, 6493 faces
- slice 50: 14775 vertices, 15068 faces
- slice 60: 24717 vertices, 25111 faces
- slice 70: 36494 vertices, 36906 faces
- slice 80: 48343 vertices, 48762 faces
- slice 90: 59540 vertices, 59962 faces
- slice 100: 72536 vertices, 73009 faces
- slice 110: 85022 vertices, 85490 faces
- slice 120: 97407 vertices, 97880 faces
- slice 130: 109529 vertices, 109979 faces
- slice 140: 120468 vertices, 120905 faces
- slice 150: 130817 vertices, 131231 faces
- slice 160: 138782 vertices, 139170 faces
- slice 170: 146305 vertices, 146659 faces
- slice 180: 153139 vertices, 153434 faces
- slice 190: 158529 vertices, 158802 faces
- slice 200: 161374 vertices, 161521 faces
- slice 210: 161520 vertices, 161632 faces
- slice 220: 161520 vertices, 161632 faces
- slice 230: 161520 vertices, 161632 faces
- slice 240: 161520 vertices, 161632 faces
- slice 250: 161520 vertices, 161632 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/rh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess127.mgz
- mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix
- counting number of connected components...
- 161520 voxel in cpt #1: X=-112 [v=161520,e=484896,f=323264] located at (26.680758, -20.913992, 39.073849)
- For the whole surface: X=-112 [v=161520,e=484896,f=323264]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Smooth1 lh Sat Oct 7 21:25:43 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- #--------------------------------------------
- #@# Smooth1 rh Sat Oct 7 21:25:43 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- Waiting for PID 29404 of (29404 29407) to complete...
- Waiting for PID 29407 of (29404 29407) to complete...
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (29404 29407) completed and logs appended.
- #--------------------------------------------
- #@# Inflation1 lh Sat Oct 7 21:25:50 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- #--------------------------------------------
- #@# Inflation1 rh Sat Oct 7 21:25:50 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Waiting for PID 29449 of (29449 29452) to complete...
- Waiting for PID 29452 of (29449 29452) to complete...
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- Not saving sulc
- Reading ../surf/lh.smoothwm.nofix
- avg radius = 49.5 mm, total surface area = 82368 mm^2
- writing inflated surface to ../surf/lh.inflated.nofix
- inflation took 0.8 minutes
-
step 000: RMS=0.161 (target=0.015)
step 005: RMS=0.122 (target=0.015)
step 010: RMS=0.092 (target=0.015)
step 015: RMS=0.079 (target=0.015)
step 020: RMS=0.068 (target=0.015)
step 025: RMS=0.060 (target=0.015)
step 030: RMS=0.055 (target=0.015)
step 035: RMS=0.050 (target=0.015)
step 040: RMS=0.047 (target=0.015)
step 045: RMS=0.045 (target=0.015)
step 050: RMS=0.043 (target=0.015)
step 055: RMS=0.042 (target=0.015)
step 060: RMS=0.041 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 48.298657
- mris_inflate stimesec 0.133979
- mris_inflate ru_maxrss 234576
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 33541
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 11280
- mris_inflate ru_oublock 11296
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2226
- mris_inflate ru_nivcsw 3477
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Not saving sulc
- Reading ../surf/rh.smoothwm.nofix
- avg radius = 49.3 mm, total surface area = 82867 mm^2
- writing inflated surface to ../surf/rh.inflated.nofix
- inflation took 0.8 minutes
-
step 000: RMS=0.161 (target=0.015)
step 005: RMS=0.122 (target=0.015)
step 010: RMS=0.093 (target=0.015)
step 015: RMS=0.078 (target=0.015)
step 020: RMS=0.069 (target=0.015)
step 025: RMS=0.062 (target=0.015)
step 030: RMS=0.056 (target=0.015)
step 035: RMS=0.050 (target=0.015)
step 040: RMS=0.047 (target=0.015)
step 045: RMS=0.045 (target=0.015)
step 050: RMS=0.044 (target=0.015)
step 055: RMS=0.043 (target=0.015)
step 060: RMS=0.042 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 48.518624
- mris_inflate stimesec 0.119981
- mris_inflate ru_maxrss 236284
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 33967
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 0
- mris_inflate ru_oublock 11384
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2251
- mris_inflate ru_nivcsw 3606
- PIDs (29449 29452) completed and logs appended.
- #--------------------------------------------
- #@# QSphere lh Sat Oct 7 21:26:39 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- #--------------------------------------------
- #@# QSphere rh Sat Oct 7 21:26:39 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- Waiting for PID 29519 of (29519 29522) to complete...
- Waiting for PID 29522 of (29519 29522) to complete...
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 0.91 +- 0.57 (0.00-->8.25) (max @ vno 67997 --> 69285)
- face area 0.02 +- 0.03 (-0.29-->0.51)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.282...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.303, avgs=0
- 005/300: dt: 0.9000, rms radial error=177.043, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.485, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.752, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.917, avgs=0
- 025/300: dt: 0.9000, rms radial error=174.023, avgs=0
- 030/300: dt: 0.9000, rms radial error=173.098, avgs=0
- 035/300: dt: 0.9000, rms radial error=172.159, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.211, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.262, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.313, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.367, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.424, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.486, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.552, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.623, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.700, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.781, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.868, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.959, avgs=0
- 100/300: dt: 0.9000, rms radial error=160.055, avgs=0
- 105/300: dt: 0.9000, rms radial error=159.156, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.263, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.374, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.490, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.611, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.737, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.867, avgs=0
- 140/300: dt: 0.9000, rms radial error=153.002, avgs=0
- 145/300: dt: 0.9000, rms radial error=152.142, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.287, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.436, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.590, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.750, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.915, avgs=0
- 175/300: dt: 0.9000, rms radial error=147.084, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.257, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.435, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.617, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.805, avgs=0
- 200/300: dt: 0.9000, rms radial error=142.996, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.192, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.392, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.597, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.806, avgs=0
- 225/300: dt: 0.9000, rms radial error=139.019, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.237, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.459, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.685, avgs=0
- 245/300: dt: 0.9000, rms radial error=135.916, avgs=0
- 250/300: dt: 0.9000, rms radial error=135.151, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.390, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.633, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.880, avgs=0
- 270/300: dt: 0.9000, rms radial error=132.132, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.388, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.648, avgs=0
- 285/300: dt: 0.9000, rms radial error=129.912, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.180, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.452, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.728, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 19395.81
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00013
- epoch 2 (K=40.0), pass 1, starting sse = 3496.21
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00004
- epoch 3 (K=160.0), pass 1, starting sse = 428.40
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.05/10 = 0.00470
- epoch 4 (K=640.0), pass 1, starting sse = 36.22
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.07/11 = 0.00634
- final distance error %30.03
- writing spherical brain to ../surf/lh.qsphere.nofix
- spherical transformation took 0.08 hours
- mris_sphere utimesec 277.265849
- mris_sphere stimesec 0.171973
- mris_sphere ru_maxrss 234764
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 34098
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 11320
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 8569
- mris_sphere ru_nivcsw 20030
- FSRUNTIME@ mris_sphere 0.0771 hours 1 threads
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 0.90 +- 0.57 (0.00-->8.85) (max @ vno 73563 --> 74840)
- face area 0.02 +- 0.03 (-0.26-->0.62)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.279...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.374, avgs=0
- 005/300: dt: 0.9000, rms radial error=177.114, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.556, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.824, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.991, avgs=0
- 025/300: dt: 0.9000, rms radial error=174.100, avgs=0
- 030/300: dt: 0.9000, rms radial error=173.177, avgs=0
- 035/300: dt: 0.9000, rms radial error=172.238, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.290, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.341, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.398, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.459, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.525, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.594, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.668, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.747, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.830, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.918, avgs=0
- 090/300: dt: 0.9000, rms radial error=162.011, avgs=0
- 095/300: dt: 0.9000, rms radial error=161.108, avgs=0
- 100/300: dt: 0.9000, rms radial error=160.211, avgs=0
- 105/300: dt: 0.9000, rms radial error=159.318, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.430, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.547, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.668, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.794, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.925, avgs=0
- 135/300: dt: 0.9000, rms radial error=154.060, avgs=0
- 140/300: dt: 0.9000, rms radial error=153.199, avgs=0
- 145/300: dt: 0.9000, rms radial error=152.343, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.491, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.644, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.801, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.963, avgs=0
- 170/300: dt: 0.9000, rms radial error=148.129, avgs=0
- 175/300: dt: 0.9000, rms radial error=147.299, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.474, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.653, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.835, avgs=0
- 195/300: dt: 0.9000, rms radial error=144.021, avgs=0
- 200/300: dt: 0.9000, rms radial error=143.212, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.407, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.606, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.810, avgs=0
- 220/300: dt: 0.9000, rms radial error=140.018, avgs=0
- 225/300: dt: 0.9000, rms radial error=139.231, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.448, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.669, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.894, avgs=0
- 245/300: dt: 0.9000, rms radial error=136.124, avgs=0
- 250/300: dt: 0.9000, rms radial error=135.357, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.596, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.838, avgs=0
- 265/300: dt: 0.9000, rms radial error=133.085, avgs=0
- 270/300: dt: 0.9000, rms radial error=132.335, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.590, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.849, avgs=0
- 285/300: dt: 0.9000, rms radial error=130.112, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.379, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.650, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.926, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 19605.65
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00009
- epoch 2 (K=40.0), pass 1, starting sse = 3555.47
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00000
- epoch 3 (K=160.0), pass 1, starting sse = 436.74
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.04/10 = 0.00389
- epoch 4 (K=640.0), pass 1, starting sse = 37.26
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.12/14 = 0.00885
- final distance error %30.87
- writing spherical brain to ../surf/rh.qsphere.nofix
- spherical transformation took 0.08 hours
- mris_sphere utimesec 293.355403
- mris_sphere stimesec 0.196970
- mris_sphere ru_maxrss 236492
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 34018
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 11408
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 8551
- mris_sphere ru_nivcsw 19746
- FSRUNTIME@ mris_sphere 0.0798 hours 1 threads
- PIDs (29519 29522) completed and logs appended.
- #--------------------------------------------
- #@# Fix Topology Copy lh Sat Oct 7 21:31:27 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- cp ../surf/lh.orig.nofix ../surf/lh.orig
- cp ../surf/lh.inflated.nofix ../surf/lh.inflated
- #--------------------------------------------
- #@# Fix Topology Copy rh Sat Oct 7 21:31:27 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- cp ../surf/rh.orig.nofix ../surf/rh.orig
- cp ../surf/rh.inflated.nofix ../surf/rh.inflated
- #@# Fix Topology lh Sat Oct 7 21:31:27 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051366 lh
- #@# Fix Topology rh Sat Oct 7 21:31:27 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051366 rh
- Waiting for PID 29740 of (29740 29743) to complete...
- Waiting for PID 29743 of (29740 29743) to complete...
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051366 lh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-124 (nv=160210, nf=320668, ne=481002, g=63)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 11 iterations
- marking ambiguous vertices...
- 7371 ambiguous faces found in tessellation
- segmenting defects...
- 72 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- -merging segment 2 into 1
- -merging segment 44 into 41
- -merging segment 52 into 45
- 69 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.6899 (-4.8450)
- -vertex loglikelihood: -6.6644 (-3.3322)
- -normal dot loglikelihood: -3.5696 (-3.5696)
- -quad curv loglikelihood: -6.4168 (-3.2084)
- Total Loglikelihood : -26.3407
- CORRECTING DEFECT 0 (vertices=28, convex hull=48, v0=13171)
- After retessellation of defect 0 (v0=13171), euler #=-65 (155540,464406,308801) : difference with theory (-66) = -1
- CORRECTING DEFECT 1 (vertices=81, convex hull=118, v0=16361)
- After retessellation of defect 1 (v0=16361), euler #=-63 (155576,464567,308928) : difference with theory (-65) = -2
- CORRECTING DEFECT 2 (vertices=57, convex hull=67, v0=22151)
- After retessellation of defect 2 (v0=22151), euler #=-62 (155590,464636,308984) : difference with theory (-64) = -2
- CORRECTING DEFECT 3 (vertices=88, convex hull=74, v0=23154)
- After retessellation of defect 3 (v0=23154), euler #=-61 (155611,464730,309058) : difference with theory (-63) = -2
- CORRECTING DEFECT 4 (vertices=247, convex hull=133, v0=24261)
- After retessellation of defect 4 (v0=24261), euler #=-60 (155661,464943,309222) : difference with theory (-62) = -2
- CORRECTING DEFECT 5 (vertices=77, convex hull=103, v0=24589)
- After retessellation of defect 5 (v0=24589), euler #=-59 (155696,465091,309336) : difference with theory (-61) = -2
- CORRECTING DEFECT 6 (vertices=37, convex hull=100, v0=25058)
- After retessellation of defect 6 (v0=25058), euler #=-58 (155719,465205,309428) : difference with theory (-60) = -2
- CORRECTING DEFECT 7 (vertices=6, convex hull=30, v0=26198)
- After retessellation of defect 7 (v0=26198), euler #=-57 (155720,465216,309439) : difference with theory (-59) = -2
- CORRECTING DEFECT 8 (vertices=23, convex hull=45, v0=26316)
- After retessellation of defect 8 (v0=26316), euler #=-56 (155725,465251,309470) : difference with theory (-58) = -2
- CORRECTING DEFECT 9 (vertices=48, convex hull=52, v0=27401)
- After retessellation of defect 9 (v0=27401), euler #=-55 (155734,465299,309510) : difference with theory (-57) = -2
- CORRECTING DEFECT 10 (vertices=49, convex hull=104, v0=35175)
- After retessellation of defect 10 (v0=35175), euler #=-54 (155760,465421,309607) : difference with theory (-56) = -2
- CORRECTING DEFECT 11 (vertices=35, convex hull=27, v0=35981)
- After retessellation of defect 11 (v0=35981), euler #=-53 (155765,465443,309625) : difference with theory (-55) = -2
- CORRECTING DEFECT 12 (vertices=60, convex hull=83, v0=39342)
- After retessellation of defect 12 (v0=39342), euler #=-52 (155801,465585,309732) : difference with theory (-54) = -2
- CORRECTING DEFECT 13 (vertices=21, convex hull=30, v0=42416)
- After retessellation of defect 13 (v0=42416), euler #=-51 (155804,465604,309749) : difference with theory (-53) = -2
- CORRECTING DEFECT 14 (vertices=26, convex hull=36, v0=43303)
- After retessellation of defect 14 (v0=43303), euler #=-50 (155810,465635,309775) : difference with theory (-52) = -2
- CORRECTING DEFECT 15 (vertices=23, convex hull=58, v0=49698)
- After retessellation of defect 15 (v0=49698), euler #=-49 (155819,465683,309815) : difference with theory (-51) = -2
- CORRECTING DEFECT 16 (vertices=48, convex hull=69, v0=50958)
- After retessellation of defect 16 (v0=50958), euler #=-48 (155831,465745,309866) : difference with theory (-50) = -2
- CORRECTING DEFECT 17 (vertices=119, convex hull=139, v0=51190)
- After retessellation of defect 17 (v0=51190), euler #=-48 (155854,465894,309992) : difference with theory (-49) = -1
- CORRECTING DEFECT 18 (vertices=52, convex hull=49, v0=54767)
- After retessellation of defect 18 (v0=54767), euler #=-47 (155870,465959,310042) : difference with theory (-48) = -1
- CORRECTING DEFECT 19 (vertices=98, convex hull=148, v0=61498)
- normal vector of length zero at vertex 156734 with 4 faces
- After retessellation of defect 19 (v0=61498), euler #=-46 (155929,466203,310228) : difference with theory (-47) = -1
- CORRECTING DEFECT 20 (vertices=24, convex hull=39, v0=69341)
- After retessellation of defect 20 (v0=69341), euler #=-45 (155940,466249,310264) : difference with theory (-46) = -1
- CORRECTING DEFECT 21 (vertices=41, convex hull=73, v0=72280)
- After retessellation of defect 21 (v0=72280), euler #=-44 (155969,466365,310352) : difference with theory (-45) = -1
- CORRECTING DEFECT 22 (vertices=9, convex hull=21, v0=74716)
- After retessellation of defect 22 (v0=74716), euler #=-43 (155970,466375,310362) : difference with theory (-44) = -1
- CORRECTING DEFECT 23 (vertices=85, convex hull=93, v0=81008)
- After retessellation of defect 23 (v0=81008), euler #=-43 (156015,466560,310502) : difference with theory (-43) = 0
- CORRECTING DEFECT 24 (vertices=29, convex hull=40, v0=89624)
- After retessellation of defect 24 (v0=89624), euler #=-42 (156024,466599,310533) : difference with theory (-42) = 0
- CORRECTING DEFECT 25 (vertices=70, convex hull=121, v0=96149)
- After retessellation of defect 25 (v0=96149), euler #=-41 (156068,466782,310673) : difference with theory (-41) = 0
- CORRECTING DEFECT 26 (vertices=79, convex hull=99, v0=96619)
- After retessellation of defect 26 (v0=96619), euler #=-40 (156095,466905,310770) : difference with theory (-40) = 0
- CORRECTING DEFECT 27 (vertices=27, convex hull=58, v0=98051)
- After retessellation of defect 27 (v0=98051), euler #=-39 (156111,466980,310830) : difference with theory (-39) = 0
- CORRECTING DEFECT 28 (vertices=31, convex hull=65, v0=98957)
- After retessellation of defect 28 (v0=98957), euler #=-38 (156129,467060,310893) : difference with theory (-38) = 0
- CORRECTING DEFECT 29 (vertices=20, convex hull=32, v0=99076)
- After retessellation of defect 29 (v0=99076), euler #=-37 (156130,467073,310906) : difference with theory (-37) = 0
- CORRECTING DEFECT 30 (vertices=69, convex hull=41, v0=100607)
- After retessellation of defect 30 (v0=100607), euler #=-36 (156142,467123,310945) : difference with theory (-36) = 0
- CORRECTING DEFECT 31 (vertices=32, convex hull=87, v0=100616)
- After retessellation of defect 31 (v0=100616), euler #=-35 (156151,467182,310996) : difference with theory (-35) = 0
- CORRECTING DEFECT 32 (vertices=33, convex hull=36, v0=100670)
- After retessellation of defect 32 (v0=100670), euler #=-34 (156155,467205,311016) : difference with theory (-34) = 0
- CORRECTING DEFECT 33 (vertices=10, convex hull=28, v0=101924)
- After retessellation of defect 33 (v0=101924), euler #=-33 (156156,467218,311029) : difference with theory (-33) = 0
- CORRECTING DEFECT 34 (vertices=5, convex hull=21, v0=104089)
- After retessellation of defect 34 (v0=104089), euler #=-32 (156158,467229,311039) : difference with theory (-32) = 0
- CORRECTING DEFECT 35 (vertices=214, convex hull=199, v0=105097)
- After retessellation of defect 35 (v0=105097), euler #=-31 (156203,467459,311225) : difference with theory (-31) = 0
- CORRECTING DEFECT 36 (vertices=19, convex hull=35, v0=106074)
- After retessellation of defect 36 (v0=106074), euler #=-30 (156207,467481,311244) : difference with theory (-30) = 0
- CORRECTING DEFECT 37 (vertices=11, convex hull=33, v0=106116)
- After retessellation of defect 37 (v0=106116), euler #=-29 (156210,467501,311262) : difference with theory (-29) = 0
- CORRECTING DEFECT 38 (vertices=13, convex hull=31, v0=106252)
- After retessellation of defect 38 (v0=106252), euler #=-28 (156215,467523,311280) : difference with theory (-28) = 0
- CORRECTING DEFECT 39 (vertices=88, convex hull=96, v0=106638)
- After retessellation of defect 39 (v0=106638), euler #=-27 (156244,467652,311381) : difference with theory (-27) = 0
- CORRECTING DEFECT 40 (vertices=367, convex hull=237, v0=107366)
- After retessellation of defect 40 (v0=107366), euler #=-25 (156295,467930,311610) : difference with theory (-26) = -1
- CORRECTING DEFECT 41 (vertices=58, convex hull=112, v0=108519)
- After retessellation of defect 41 (v0=108519), euler #=-24 (156333,468093,311736) : difference with theory (-25) = -1
- CORRECTING DEFECT 42 (vertices=21, convex hull=54, v0=109526)
- After retessellation of defect 42 (v0=109526), euler #=-23 (156345,468147,311779) : difference with theory (-24) = -1
- CORRECTING DEFECT 43 (vertices=134, convex hull=195, v0=110600)
- After retessellation of defect 43 (v0=110600), euler #=-21 (156378,468346,311947) : difference with theory (-23) = -2
- CORRECTING DEFECT 44 (vertices=17, convex hull=25, v0=110691)
- After retessellation of defect 44 (v0=110691), euler #=-20 (156381,468362,311961) : difference with theory (-22) = -2
- CORRECTING DEFECT 45 (vertices=26, convex hull=36, v0=110833)
- After retessellation of defect 45 (v0=110833), euler #=-19 (156387,468391,311985) : difference with theory (-21) = -2
- CORRECTING DEFECT 46 (vertices=20, convex hull=30, v0=111096)
- After retessellation of defect 46 (v0=111096), euler #=-18 (156388,468405,311999) : difference with theory (-20) = -2
- CORRECTING DEFECT 47 (vertices=578, convex hull=209, v0=112966)
- After retessellation of defect 47 (v0=112966), euler #=-19 (156428,468632,312185) : difference with theory (-19) = 0
- CORRECTING DEFECT 48 (vertices=62, convex hull=87, v0=113355)
- After retessellation of defect 48 (v0=113355), euler #=-18 (156457,468758,312283) : difference with theory (-18) = 0
- CORRECTING DEFECT 49 (vertices=75, convex hull=86, v0=114398)
- After retessellation of defect 49 (v0=114398), euler #=-17 (156496,468917,312404) : difference with theory (-17) = 0
- CORRECTING DEFECT 50 (vertices=35, convex hull=63, v0=117324)
- After retessellation of defect 50 (v0=117324), euler #=-16 (156516,469006,312474) : difference with theory (-16) = 0
- CORRECTING DEFECT 51 (vertices=19, convex hull=23, v0=118927)
- After retessellation of defect 51 (v0=118927), euler #=-15 (156521,469026,312490) : difference with theory (-15) = 0
- CORRECTING DEFECT 52 (vertices=11, convex hull=23, v0=119761)
- After retessellation of defect 52 (v0=119761), euler #=-14 (156523,469039,312502) : difference with theory (-14) = 0
- CORRECTING DEFECT 53 (vertices=80, convex hull=50, v0=120728)
- After retessellation of defect 53 (v0=120728), euler #=-13 (156540,469109,312556) : difference with theory (-13) = 0
- CORRECTING DEFECT 54 (vertices=35, convex hull=62, v0=122975)
- After retessellation of defect 54 (v0=122975), euler #=-12 (156553,469173,312608) : difference with theory (-12) = 0
- CORRECTING DEFECT 55 (vertices=32, convex hull=30, v0=122991)
- After retessellation of defect 55 (v0=122991), euler #=-11 (156558,469200,312631) : difference with theory (-11) = 0
- CORRECTING DEFECT 56 (vertices=162, convex hull=128, v0=123532)
- After retessellation of defect 56 (v0=123532), euler #=-10 (156605,469410,312795) : difference with theory (-10) = 0
- CORRECTING DEFECT 57 (vertices=6, convex hull=33, v0=126369)
- After retessellation of defect 57 (v0=126369), euler #=-9 (156607,469423,312807) : difference with theory (-9) = 0
- CORRECTING DEFECT 58 (vertices=164, convex hull=108, v0=127582)
- After retessellation of defect 58 (v0=127582), euler #=-8 (156642,469575,312925) : difference with theory (-8) = 0
- CORRECTING DEFECT 59 (vertices=52, convex hull=69, v0=128419)
- After retessellation of defect 59 (v0=128419), euler #=-7 (156665,469673,313001) : difference with theory (-7) = 0
- CORRECTING DEFECT 60 (vertices=99, convex hull=57, v0=128534)
- After retessellation of defect 60 (v0=128534), euler #=-6 (156680,469737,313051) : difference with theory (-6) = 0
- CORRECTING DEFECT 61 (vertices=13, convex hull=23, v0=129345)
- After retessellation of defect 61 (v0=129345), euler #=-5 (156682,469751,313064) : difference with theory (-5) = 0
- CORRECTING DEFECT 62 (vertices=35, convex hull=37, v0=129409)
- After retessellation of defect 62 (v0=129409), euler #=-4 (156691,469793,313098) : difference with theory (-4) = 0
- CORRECTING DEFECT 63 (vertices=248, convex hull=230, v0=132969)
- After retessellation of defect 63 (v0=132969), euler #=-3 (156778,470170,313389) : difference with theory (-3) = 0
- CORRECTING DEFECT 64 (vertices=26, convex hull=53, v0=142072)
- After retessellation of defect 64 (v0=142072), euler #=-2 (156790,470225,313433) : difference with theory (-2) = 0
- CORRECTING DEFECT 65 (vertices=28, convex hull=67, v0=145590)
- After retessellation of defect 65 (v0=145590), euler #=-1 (156805,470297,313491) : difference with theory (-1) = 0
- CORRECTING DEFECT 66 (vertices=33, convex hull=66, v0=154291)
- After retessellation of defect 66 (v0=154291), euler #=0 (156820,470373,313553) : difference with theory (0) = 0
- CORRECTING DEFECT 67 (vertices=46, convex hull=79, v0=155316)
- After retessellation of defect 67 (v0=155316), euler #=1 (156843,470478,313636) : difference with theory (1) = 0
- CORRECTING DEFECT 68 (vertices=61, convex hull=98, v0=159013)
- After retessellation of defect 68 (v0=159013), euler #=2 (156857,470565,313710) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.88 +- 0.25 (0.06-->8.91) (max @ vno 131858 --> 132606)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.88 +- 0.25 (0.06-->8.91) (max @ vno 131858 --> 132606)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 260 mutations (36.6%), 450 crossovers (63.4%), 434 vertices were eliminated
- building final representation...
- 3353 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=156857, nf=313710, ne=470565, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 56.0 minutes
- 0 defective edges
- removing intersecting faces
- 000: 497 intersecting
- 001: 17 intersecting
- 002: 7 intersecting
- mris_fix_topology utimesec 3363.419682
- mris_fix_topology stimesec 0.233964
- mris_fix_topology ru_maxrss 505372
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 56632
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 11280
- mris_fix_topology ru_oublock 15208
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 568
- mris_fix_topology ru_nivcsw 7535
- FSRUNTIME@ mris_fix_topology lh 0.9340 hours 1 threads
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051366 rh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-112 (nv=161520, nf=323264, ne=484896, g=57)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 9 iterations
- marking ambiguous vertices...
- 7376 ambiguous faces found in tessellation
- segmenting defects...
- 53 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- 53 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.7627 (-4.8813)
- -vertex loglikelihood: -6.5704 (-3.2852)
- -normal dot loglikelihood: -3.5772 (-3.5772)
- -quad curv loglikelihood: -6.2693 (-3.1347)
- Total Loglikelihood : -26.1797
- CORRECTING DEFECT 0 (vertices=20, convex hull=29, v0=5374)
- After retessellation of defect 0 (v0=5374), euler #=-48 (157111,469697,312538) : difference with theory (-50) = -2
- CORRECTING DEFECT 1 (vertices=50, convex hull=89, v0=15657)
- After retessellation of defect 1 (v0=15657), euler #=-47 (157127,469784,312610) : difference with theory (-49) = -2
- CORRECTING DEFECT 2 (vertices=574, convex hull=238, v0=18038)
- After retessellation of defect 2 (v0=18038), euler #=-46 (157228,470205,312931) : difference with theory (-48) = -2
- CORRECTING DEFECT 3 (vertices=17, convex hull=40, v0=24344)
- After retessellation of defect 3 (v0=24344), euler #=-45 (157235,470239,312959) : difference with theory (-47) = -2
- CORRECTING DEFECT 4 (vertices=30, convex hull=55, v0=31297)
- After retessellation of defect 4 (v0=31297), euler #=-44 (157244,470287,312999) : difference with theory (-46) = -2
- CORRECTING DEFECT 5 (vertices=22, convex hull=18, v0=36372)
- After retessellation of defect 5 (v0=36372), euler #=-43 (157245,470295,313007) : difference with theory (-45) = -2
- CORRECTING DEFECT 6 (vertices=29, convex hull=63, v0=38871)
- After retessellation of defect 6 (v0=38871), euler #=-42 (157254,470347,313051) : difference with theory (-44) = -2
- CORRECTING DEFECT 7 (vertices=113, convex hull=135, v0=42290)
- After retessellation of defect 7 (v0=42290), euler #=-41 (157276,470477,313160) : difference with theory (-43) = -2
- CORRECTING DEFECT 8 (vertices=5, convex hull=27, v0=43464)
- After retessellation of defect 8 (v0=43464), euler #=-40 (157277,470487,313170) : difference with theory (-42) = -2
- CORRECTING DEFECT 9 (vertices=33, convex hull=58, v0=43535)
- After retessellation of defect 9 (v0=43535), euler #=-39 (157290,470550,313221) : difference with theory (-41) = -2
- CORRECTING DEFECT 10 (vertices=23, convex hull=65, v0=50854)
- After retessellation of defect 10 (v0=50854), euler #=-38 (157298,470596,313260) : difference with theory (-40) = -2
- CORRECTING DEFECT 11 (vertices=19, convex hull=29, v0=51836)
- After retessellation of defect 11 (v0=51836), euler #=-37 (157301,470613,313275) : difference with theory (-39) = -2
- CORRECTING DEFECT 12 (vertices=24, convex hull=23, v0=51942)
- After retessellation of defect 12 (v0=51942), euler #=-36 (157303,470625,313286) : difference with theory (-38) = -2
- CORRECTING DEFECT 13 (vertices=43, convex hull=76, v0=55619)
- After retessellation of defect 13 (v0=55619), euler #=-35 (157314,470691,313342) : difference with theory (-37) = -2
- CORRECTING DEFECT 14 (vertices=153, convex hull=187, v0=64278)
- After retessellation of defect 14 (v0=64278), euler #=-34 (157325,470813,313454) : difference with theory (-36) = -2
- CORRECTING DEFECT 15 (vertices=30, convex hull=85, v0=65252)
- After retessellation of defect 15 (v0=65252), euler #=-33 (157345,470905,313527) : difference with theory (-35) = -2
- CORRECTING DEFECT 16 (vertices=26, convex hull=25, v0=68425)
- After retessellation of defect 16 (v0=68425), euler #=-32 (157351,470930,313547) : difference with theory (-34) = -2
- CORRECTING DEFECT 17 (vertices=26, convex hull=54, v0=70119)
- After retessellation of defect 17 (v0=70119), euler #=-31 (157360,470977,313586) : difference with theory (-33) = -2
- CORRECTING DEFECT 18 (vertices=50, convex hull=86, v0=72212)
- After retessellation of defect 18 (v0=72212), euler #=-30 (157370,471043,313643) : difference with theory (-32) = -2
- CORRECTING DEFECT 19 (vertices=50, convex hull=79, v0=72779)
- After retessellation of defect 19 (v0=72779), euler #=-29 (157379,471105,313697) : difference with theory (-31) = -2
- CORRECTING DEFECT 20 (vertices=33, convex hull=29, v0=73808)
- After retessellation of defect 20 (v0=73808), euler #=-28 (157382,471124,313714) : difference with theory (-30) = -2
- CORRECTING DEFECT 21 (vertices=33, convex hull=60, v0=73988)
- After retessellation of defect 21 (v0=73988), euler #=-27 (157391,471172,313754) : difference with theory (-29) = -2
- CORRECTING DEFECT 22 (vertices=222, convex hull=118, v0=83581)
- After retessellation of defect 22 (v0=83581), euler #=-26 (157438,471367,313903) : difference with theory (-28) = -2
- CORRECTING DEFECT 23 (vertices=7, convex hull=33, v0=84722)
- After retessellation of defect 23 (v0=84722), euler #=-25 (157441,471387,313921) : difference with theory (-27) = -2
- CORRECTING DEFECT 24 (vertices=20, convex hull=46, v0=89361)
- After retessellation of defect 24 (v0=89361), euler #=-24 (157450,471428,313954) : difference with theory (-26) = -2
- CORRECTING DEFECT 25 (vertices=40, convex hull=31, v0=91266)
- After retessellation of defect 25 (v0=91266), euler #=-23 (157456,471456,313977) : difference with theory (-25) = -2
- CORRECTING DEFECT 26 (vertices=43, convex hull=77, v0=91707)
- After retessellation of defect 26 (v0=91707), euler #=-22 (157479,471558,314057) : difference with theory (-24) = -2
- CORRECTING DEFECT 27 (vertices=29, convex hull=73, v0=103311)
- After retessellation of defect 27 (v0=103311), euler #=-21 (157497,471642,314124) : difference with theory (-23) = -2
- CORRECTING DEFECT 28 (vertices=289, convex hull=153, v0=104443)
- After retessellation of defect 28 (v0=104443), euler #=-21 (157536,471836,314279) : difference with theory (-22) = -1
- CORRECTING DEFECT 29 (vertices=1096, convex hull=241, v0=105999)
- After retessellation of defect 29 (v0=105999), euler #=-20 (157650,472298,314628) : difference with theory (-21) = -1
- CORRECTING DEFECT 30 (vertices=16, convex hull=57, v0=108827)
- After retessellation of defect 30 (v0=108827), euler #=-19 (157657,472338,314662) : difference with theory (-20) = -1
- CORRECTING DEFECT 31 (vertices=26, convex hull=67, v0=110361)
- After retessellation of defect 31 (v0=110361), euler #=-18 (157667,472392,314707) : difference with theory (-19) = -1
- CORRECTING DEFECT 32 (vertices=31, convex hull=28, v0=110642)
- After retessellation of defect 32 (v0=110642), euler #=-17 (157670,472412,314725) : difference with theory (-18) = -1
- CORRECTING DEFECT 33 (vertices=16, convex hull=34, v0=111332)
- After retessellation of defect 33 (v0=111332), euler #=-16 (157672,472428,314740) : difference with theory (-17) = -1
- CORRECTING DEFECT 34 (vertices=25, convex hull=73, v0=111587)
- After retessellation of defect 34 (v0=111587), euler #=-15 (157685,472494,314794) : difference with theory (-16) = -1
- CORRECTING DEFECT 35 (vertices=69, convex hull=54, v0=113897)
- After retessellation of defect 35 (v0=113897), euler #=-15 (157699,472562,314848) : difference with theory (-15) = 0
- CORRECTING DEFECT 36 (vertices=6, convex hull=13, v0=114626)
- After retessellation of defect 36 (v0=114626), euler #=-14 (157699,472564,314851) : difference with theory (-14) = 0
- CORRECTING DEFECT 37 (vertices=37, convex hull=37, v0=118136)
- After retessellation of defect 37 (v0=118136), euler #=-13 (157704,472589,314872) : difference with theory (-13) = 0
- CORRECTING DEFECT 38 (vertices=99, convex hull=60, v0=119094)
- After retessellation of defect 38 (v0=119094), euler #=-12 (157712,472637,314913) : difference with theory (-12) = 0
- CORRECTING DEFECT 39 (vertices=42, convex hull=65, v0=121629)
- After retessellation of defect 39 (v0=121629), euler #=-11 (157724,472698,314963) : difference with theory (-11) = 0
- CORRECTING DEFECT 40 (vertices=60, convex hull=71, v0=122258)
- After retessellation of defect 40 (v0=122258), euler #=-10 (157734,472760,315016) : difference with theory (-10) = 0
- CORRECTING DEFECT 41 (vertices=23, convex hull=63, v0=123352)
- After retessellation of defect 41 (v0=123352), euler #=-9 (157747,472821,315065) : difference with theory (-9) = 0
- CORRECTING DEFECT 42 (vertices=38, convex hull=47, v0=123623)
- After retessellation of defect 42 (v0=123623), euler #=-8 (157756,472865,315101) : difference with theory (-8) = 0
- CORRECTING DEFECT 43 (vertices=69, convex hull=70, v0=124396)
- After retessellation of defect 43 (v0=124396), euler #=-7 (157786,472985,315192) : difference with theory (-7) = 0
- CORRECTING DEFECT 44 (vertices=49, convex hull=62, v0=126469)
- After retessellation of defect 44 (v0=126469), euler #=-6 (157809,473081,315266) : difference with theory (-6) = 0
- CORRECTING DEFECT 45 (vertices=37, convex hull=61, v0=128639)
- After retessellation of defect 45 (v0=128639), euler #=-5 (157836,473186,315345) : difference with theory (-5) = 0
- CORRECTING DEFECT 46 (vertices=81, convex hull=115, v0=130664)
- After retessellation of defect 46 (v0=130664), euler #=-4 (157878,473367,315485) : difference with theory (-4) = 0
- CORRECTING DEFECT 47 (vertices=41, convex hull=76, v0=133965)
- After retessellation of defect 47 (v0=133965), euler #=-3 (157902,473477,315572) : difference with theory (-3) = 0
- CORRECTING DEFECT 48 (vertices=43, convex hull=67, v0=139693)
- After retessellation of defect 48 (v0=139693), euler #=-2 (157921,473558,315635) : difference with theory (-2) = 0
- CORRECTING DEFECT 49 (vertices=42, convex hull=78, v0=142772)
- After retessellation of defect 49 (v0=142772), euler #=-1 (157941,473647,315705) : difference with theory (-1) = 0
- CORRECTING DEFECT 50 (vertices=337, convex hull=258, v0=143316)
- After retessellation of defect 50 (v0=143316), euler #=0 (157996,473944,315948) : difference with theory (0) = 0
- CORRECTING DEFECT 51 (vertices=21, convex hull=58, v0=151108)
- After retessellation of defect 51 (v0=151108), euler #=1 (158007,473998,315992) : difference with theory (1) = 0
- CORRECTING DEFECT 52 (vertices=48, convex hull=38, v0=158086)
- After retessellation of defect 52 (v0=158086), euler #=2 (158014,474036,316024) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.87 +- 0.24 (0.09-->8.44) (max @ vno 39082 --> 157573)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.87 +- 0.24 (0.09-->8.44) (max @ vno 39082 --> 157573)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 199 mutations (35.2%), 366 crossovers (64.8%), 344 vertices were eliminated
- building final representation...
- 3506 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=158014, nf=316024, ne=474036, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 49.0 minutes
- 0 defective edges
- removing intersecting faces
- 000: 448 intersecting
- 001: 34 intersecting
- 002: 23 intersecting
- 003: 18 intersecting
- 004: 10 intersecting
- 005: 2 intersecting
- expanding nbhd size to 2
- 006: 7 intersecting
- 007: 5 intersecting
- mris_fix_topology utimesec 2939.329154
- mris_fix_topology stimesec 0.468928
- mris_fix_topology ru_maxrss 509856
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 56273
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 22736
- mris_fix_topology ru_oublock 15272
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 568
- mris_fix_topology ru_nivcsw 8468
- FSRUNTIME@ mris_fix_topology rh 0.8167 hours 1 threads
- PIDs (29740 29743) completed and logs appended.
- mris_euler_number ../surf/lh.orig
- euler # = v-e+f = 2g-2: 156857 - 470565 + 313710 = 2 --> 0 holes
- F =2V-4: 313710 = 313714-4 (0)
- 2E=3F: 941130 = 941130 (0)
- total defect index = 0
- mris_euler_number ../surf/rh.orig
- euler # = v-e+f = 2g-2: 158014 - 474036 + 316024 = 2 --> 0 holes
- F =2V-4: 316024 = 316028-4 (0)
- 2E=3F: 948072 = 948072 (0)
- total defect index = 0
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_remove_intersection ../surf/lh.orig ../surf/lh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 66 intersecting
- 001: 10 intersecting
- writing corrected surface to ../surf/lh.orig
- rm ../surf/lh.inflated
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_remove_intersection ../surf/rh.orig ../surf/rh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 82 intersecting
- 001: 25 intersecting
- 002: 21 intersecting
- 003: 17 intersecting
- 004: 6 intersecting
- 005: 2 intersecting
- expanding nbhd size to 2
- 006: 4 intersecting
- writing corrected surface to ../surf/rh.orig
- rm ../surf/rh.inflated
- #--------------------------------------------
- #@# Make White Surf lh Sat Oct 7 22:27:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051366 lh
- #--------------------------------------------
- #@# Make White Surf rh Sat Oct 7 22:27:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051366 rh
- Waiting for PID 791 of (791 794) to complete...
- Waiting for PID 794 of (791 794) to complete...
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051366 lh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- 43106 bright wm thresholded.
- 553 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.orig...
- computing class statistics...
- border white: 293163 voxels (1.75%)
- border gray 328515 voxels (1.96%)
- WM (96.0): 96.1 +- 9.5 [70.0 --> 110.0]
- GM (67.0) : 67.0 +- 10.6 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 53.4 (was 70)
- setting MAX_BORDER_WHITE to 110.5 (was 105)
- setting MIN_BORDER_WHITE to 64.0 (was 85)
- setting MAX_CSF to 42.8 (was 40)
- setting MAX_GRAY to 91.5 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 53.4 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 32.2 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.81 +- 0.23 (0.01-->4.08) (max @ vno 131239 --> 156727)
- face area 0.27 +- 0.13 (0.00-->3.40)
- mean absolute distance = 0.66 +- 0.84
- 3413 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=101+-8.7, GM=64+-7.0
- mean inside = 90.9, mean outside = 70.1
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 1 vertex label from ripped group
- mean border=75.6, 102 (102) missing vertices, mean dist 0.2 [0.6 (%34.7)->0.7 (%65.3))]
- %64 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.26 (0.09-->4.58) (max @ vno 117588 --> 116632)
- face area 0.27 +- 0.13 (0.00-->3.67)
- mean absolute distance = 0.35 +- 0.55
- 3867 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=4242222.0, rms=10.987
- 001: dt: 0.5000, sse=2371668.2, rms=7.693 (29.981%)
- 002: dt: 0.5000, sse=1639358.6, rms=5.908 (23.200%)
- 003: dt: 0.5000, sse=1316260.1, rms=4.916 (16.790%)
- 004: dt: 0.5000, sse=1180633.6, rms=4.427 (9.945%)
- 005: dt: 0.5000, sse=1118113.4, rms=4.180 (5.581%)
- 006: dt: 0.5000, sse=1095171.6, rms=4.082 (2.358%)
- 007: dt: 0.5000, sse=1077846.8, rms=4.011 (1.726%)
- rms = 3.98, time step reduction 1 of 3 to 0.250...
- 008: dt: 0.5000, sse=1074358.9, rms=3.982 (0.716%)
- 009: dt: 0.2500, sse=843596.7, rms=2.777 (30.279%)
- 010: dt: 0.2500, sse=786325.8, rms=2.402 (13.475%)
- 011: dt: 0.2500, sse=777453.2, rms=2.324 (3.265%)
- 012: dt: 0.2500, sse=767018.6, rms=2.252 (3.081%)
- rms = 2.23, time step reduction 2 of 3 to 0.125...
- 013: dt: 0.2500, sse=765242.1, rms=2.227 (1.139%)
- 014: dt: 0.1250, sse=746614.1, rms=2.085 (6.376%)
- rms = 2.07, time step reduction 3 of 3 to 0.062...
- 015: dt: 0.1250, sse=745187.8, rms=2.066 (0.887%)
- positioning took 1.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 1 vertex label from ripped group
- mean border=79.6, 124 (47) missing vertices, mean dist -0.2 [0.4 (%75.4)->0.3 (%24.6))]
- %78 local maxima, %17 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.89 +- 0.26 (0.08-->5.13) (max @ vno 117588 --> 116632)
- face area 0.34 +- 0.17 (0.00-->4.95)
- mean absolute distance = 0.25 +- 0.37
- 3909 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1617813.5, rms=5.337
- 016: dt: 0.5000, sse=1164412.2, rms=3.630 (31.992%)
- rms = 3.88, time step reduction 1 of 3 to 0.250...
- 017: dt: 0.2500, sse=980918.1, rms=2.670 (26.426%)
- 018: dt: 0.2500, sse=903806.6, rms=2.141 (19.824%)
- 019: dt: 0.2500, sse=874467.8, rms=1.883 (12.057%)
- 020: dt: 0.2500, sse=866545.0, rms=1.818 (3.454%)
- rms = 1.77, time step reduction 2 of 3 to 0.125...
- 021: dt: 0.2500, sse=863897.5, rms=1.769 (2.712%)
- 022: dt: 0.1250, sse=849034.1, rms=1.647 (6.861%)
- rms = 1.64, time step reduction 3 of 3 to 0.062...
- 023: dt: 0.1250, sse=848879.8, rms=1.638 (0.574%)
- positioning took 1.0 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 1 vertex label from ripped group
- mean border=82.1, 124 (37) missing vertices, mean dist -0.1 [0.3 (%68.9)->0.2 (%31.1))]
- %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.89 +- 0.26 (0.06-->5.28) (max @ vno 117588 --> 116632)
- face area 0.33 +- 0.17 (0.00-->5.37)
- mean absolute distance = 0.22 +- 0.32
- 3933 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1097553.1, rms=3.406
- rms = 3.45, time step reduction 1 of 3 to 0.250...
- 024: dt: 0.2500, sse=933362.8, rms=2.461 (27.731%)
- 025: dt: 0.2500, sse=845958.6, rms=1.734 (29.541%)
- 026: dt: 0.2500, sse=831096.8, rms=1.601 (7.707%)
- rms = 1.57, time step reduction 2 of 3 to 0.125...
- 027: dt: 0.2500, sse=826801.5, rms=1.569 (2.001%)
- 028: dt: 0.1250, sse=838410.4, rms=1.447 (7.733%)
- rms = 1.44, time step reduction 3 of 3 to 0.062...
- 029: dt: 0.1250, sse=815513.8, rms=1.441 (0.457%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 1 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=82.9, 134 (31) missing vertices, mean dist -0.0 [0.2 (%54.8)->0.2 (%45.2))]
- %88 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white.preaparc...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=840800.8, rms=1.779
- rms = 2.20, time step reduction 1 of 3 to 0.250...
- 030: dt: 0.2500, sse=792783.8, rms=1.258 (29.296%)
- 031: dt: 0.2500, sse=791541.2, rms=1.052 (16.376%)
- rms = 1.06, time step reduction 2 of 3 to 0.125...
- rms = 1.04, time step reduction 3 of 3 to 0.062...
- 032: dt: 0.1250, sse=780374.6, rms=1.045 (0.674%)
- positioning took 0.5 minutes
- generating cortex label...
- 12 non-cortical segments detected
- only using segment with 8899 vertices
- erasing segment 0 (vno[0] = 34829)
- erasing segment 1 (vno[0] = 34854)
- erasing segment 2 (vno[0] = 42432)
- erasing segment 3 (vno[0] = 47149)
- erasing segment 5 (vno[0] = 79656)
- erasing segment 6 (vno[0] = 109633)
- erasing segment 7 (vno[0] = 110688)
- erasing segment 8 (vno[0] = 114601)
- erasing segment 9 (vno[0] = 114622)
- erasing segment 10 (vno[0] = 115516)
- erasing segment 11 (vno[0] = 116622)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.area
- vertex spacing 0.89 +- 0.26 (0.05-->5.35) (max @ vno 116632 --> 117588)
- face area 0.33 +- 0.17 (0.00-->5.46)
- refinement took 6.1 minutes
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051366 rh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- 43106 bright wm thresholded.
- 553 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.orig...
- computing class statistics...
- border white: 293163 voxels (1.75%)
- border gray 328515 voxels (1.96%)
- WM (96.0): 96.1 +- 9.5 [70.0 --> 110.0]
- GM (67.0) : 67.0 +- 10.6 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 55.4 (was 70)
- setting MAX_BORDER_WHITE to 111.5 (was 105)
- setting MIN_BORDER_WHITE to 66.0 (was 85)
- setting MAX_CSF to 44.8 (was 40)
- setting MAX_GRAY to 92.5 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 55.4 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 34.2 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.81 +- 0.23 (0.02-->5.69) (max @ vno 157202 --> 157227)
- face area 0.27 +- 0.13 (0.00-->5.51)
- mean absolute distance = 0.65 +- 0.84
- 3601 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-8.7, GM=66+-7.8
- mean inside = 91.3, mean outside = 71.4
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- mean border=77.7, 104 (104) missing vertices, mean dist 0.2 [0.6 (%38.3)->0.7 (%61.7))]
- %64 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.26 (0.07-->5.56) (max @ vno 157202 --> 157227)
- face area 0.27 +- 0.13 (0.00-->6.08)
- mean absolute distance = 0.37 +- 0.56
- 4570 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3821269.0, rms=10.230
- 001: dt: 0.5000, sse=2128343.2, rms=7.089 (30.697%)
- 002: dt: 0.5000, sse=1504210.4, rms=5.440 (23.264%)
- 003: dt: 0.5000, sse=1231835.1, rms=4.577 (15.866%)
- 004: dt: 0.5000, sse=1113043.2, rms=4.129 (9.781%)
- 005: dt: 0.5000, sse=1062932.1, rms=3.913 (5.249%)
- 006: dt: 0.5000, sse=1044129.2, rms=3.811 (2.598%)
- 007: dt: 0.5000, sse=1027128.5, rms=3.758 (1.383%)
- rms = 3.72, time step reduction 1 of 3 to 0.250...
- 008: dt: 0.5000, sse=1023240.8, rms=3.722 (0.962%)
- 009: dt: 0.2500, sse=819765.1, rms=2.579 (30.712%)
- 010: dt: 0.2500, sse=766994.6, rms=2.220 (13.922%)
- 011: dt: 0.2500, sse=766022.6, rms=2.151 (3.121%)
- 012: dt: 0.2500, sse=751000.8, rms=2.085 (3.044%)
- rms = 2.07, time step reduction 2 of 3 to 0.125...
- 013: dt: 0.2500, sse=748064.7, rms=2.069 (0.795%)
- 014: dt: 0.1250, sse=733151.2, rms=1.942 (6.095%)
- rms = 1.93, time step reduction 3 of 3 to 0.062...
- 015: dt: 0.1250, sse=731431.2, rms=1.925 (0.878%)
- positioning took 1.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=81.6, 145 (29) missing vertices, mean dist -0.2 [0.4 (%75.2)->0.3 (%24.8))]
- %78 local maxima, %17 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.88 +- 0.25 (0.08-->5.54) (max @ vno 157202 --> 157227)
- face area 0.34 +- 0.17 (0.00-->8.15)
- mean absolute distance = 0.26 +- 0.39
- 4516 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1575674.1, rms=5.192
- 016: dt: 0.5000, sse=1144354.2, rms=3.549 (31.651%)
- rms = 3.68, time step reduction 1 of 3 to 0.250...
- 017: dt: 0.2500, sse=980562.1, rms=2.682 (24.410%)
- 018: dt: 0.2500, sse=902287.3, rms=2.138 (20.289%)
- 019: dt: 0.2500, sse=873154.8, rms=1.873 (12.418%)
- 020: dt: 0.2500, sse=867358.0, rms=1.779 (5.021%)
- 021: dt: 0.2500, sse=855122.2, rms=1.719 (3.329%)
- rms = 1.69, time step reduction 2 of 3 to 0.125...
- 022: dt: 0.2500, sse=855558.5, rms=1.693 (1.554%)
- 023: dt: 0.1250, sse=842857.8, rms=1.600 (5.469%)
- rms = 1.59, time step reduction 3 of 3 to 0.062...
- 024: dt: 0.1250, sse=842167.9, rms=1.592 (0.475%)
- positioning took 1.1 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- mean border=83.9, 138 (17) missing vertices, mean dist -0.1 [0.3 (%68.8)->0.2 (%31.2))]
- %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.88 +- 0.26 (0.08-->5.48) (max @ vno 157202 --> 157227)
- face area 0.33 +- 0.17 (0.00-->8.20)
- mean absolute distance = 0.22 +- 0.33
- 3649 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1066990.2, rms=3.266
- 025: dt: 0.5000, sse=1071931.5, rms=3.179 (2.687%)
- rms = 3.56, time step reduction 1 of 3 to 0.250...
- 026: dt: 0.2500, sse=890663.8, rms=2.153 (32.268%)
- 027: dt: 0.2500, sse=839572.9, rms=1.725 (19.895%)
- 028: dt: 0.2500, sse=828895.9, rms=1.599 (7.274%)
- rms = 1.58, time step reduction 2 of 3 to 0.125...
- 029: dt: 0.2500, sse=831293.4, rms=1.581 (1.122%)
- 030: dt: 0.1250, sse=818462.6, rms=1.452 (8.157%)
- rms = 1.44, time step reduction 3 of 3 to 0.062...
- 031: dt: 0.1250, sse=810157.9, rms=1.442 (0.675%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- mean border=84.7, 149 (10) missing vertices, mean dist -0.0 [0.2 (%55.0)->0.2 (%45.0))]
- %88 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white.preaparc...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=834404.0, rms=1.765
- rms = 2.08, time step reduction 1 of 3 to 0.250...
- 032: dt: 0.2500, sse=789034.2, rms=1.288 (27.044%)
- 033: dt: 0.2500, sse=775675.2, rms=1.088 (15.520%)
- rms = 1.10, time step reduction 2 of 3 to 0.125...
- rms = 1.08, time step reduction 3 of 3 to 0.062...
- 034: dt: 0.1250, sse=772717.3, rms=1.081 (0.593%)
- positioning took 0.5 minutes
- generating cortex label...
- 20 non-cortical segments detected
- only using segment with 8212 vertices
- erasing segment 0 (vno[0] = 47091)
- erasing segment 1 (vno[0] = 48215)
- erasing segment 2 (vno[0] = 51812)
- erasing segment 4 (vno[0] = 84026)
- erasing segment 5 (vno[0] = 87686)
- erasing segment 6 (vno[0] = 93731)
- erasing segment 7 (vno[0] = 97342)
- erasing segment 8 (vno[0] = 107226)
- erasing segment 9 (vno[0] = 109386)
- erasing segment 10 (vno[0] = 111427)
- erasing segment 11 (vno[0] = 111659)
- erasing segment 12 (vno[0] = 113431)
- erasing segment 13 (vno[0] = 113484)
- erasing segment 14 (vno[0] = 114507)
- erasing segment 15 (vno[0] = 114588)
- erasing segment 16 (vno[0] = 116527)
- erasing segment 17 (vno[0] = 117456)
- erasing segment 18 (vno[0] = 121476)
- erasing segment 19 (vno[0] = 122477)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.area
- vertex spacing 0.88 +- 0.26 (0.02-->5.53) (max @ vno 157202 --> 157227)
- face area 0.32 +- 0.16 (0.00-->8.04)
- refinement took 6.4 minutes
- PIDs (791 794) completed and logs appended.
- #--------------------------------------------
- #@# Smooth2 lh Sat Oct 7 22:34:12 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- #--------------------------------------------
- #@# Smooth2 rh Sat Oct 7 22:34:12 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- Waiting for PID 1025 of (1025 1028) to complete...
- Waiting for PID 1028 of (1025 1028) to complete...
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (1025 1028) completed and logs appended.
- #--------------------------------------------
- #@# Inflation2 lh Sat Oct 7 22:34:20 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- #--------------------------------------------
- #@# Inflation2 rh Sat Oct 7 22:34:20 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Waiting for PID 1073 of (1073 1076) to complete...
- Waiting for PID 1076 of (1073 1076) to complete...
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- Reading ../surf/lh.smoothwm
- avg radius = 49.7 mm, total surface area = 93432 mm^2
- writing inflated surface to ../surf/lh.inflated
- writing sulcal depths to ../surf/lh.sulc
-
step 000: RMS=0.181 (target=0.015)
step 005: RMS=0.126 (target=0.015)
step 010: RMS=0.094 (target=0.015)
step 015: RMS=0.078 (target=0.015)
step 020: RMS=0.064 (target=0.015)
step 025: RMS=0.053 (target=0.015)
step 030: RMS=0.043 (target=0.015)
step 035: RMS=0.036 (target=0.015)
step 040: RMS=0.031 (target=0.015)
step 045: RMS=0.028 (target=0.015)
step 050: RMS=0.025 (target=0.015)
step 055: RMS=0.023 (target=0.015)
step 060: RMS=0.022 (target=0.015)
- inflation complete.
- inflation took 0.9 minutes
- mris_inflate utimesec 53.318894
- mris_inflate stimesec 0.125980
- mris_inflate ru_maxrss 229868
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 33515
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 0
- mris_inflate ru_oublock 12288
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 5467
- mris_inflate ru_nivcsw 5042
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Reading ../surf/rh.smoothwm
- avg radius = 49.4 mm, total surface area = 92546 mm^2
- writing inflated surface to ../surf/rh.inflated
- writing sulcal depths to ../surf/rh.sulc
-
step 000: RMS=0.180 (target=0.015)
step 005: RMS=0.126 (target=0.015)
step 010: RMS=0.095 (target=0.015)
step 015: RMS=0.077 (target=0.015)
step 020: RMS=0.065 (target=0.015)
step 025: RMS=0.056 (target=0.015)
step 030: RMS=0.046 (target=0.015)
step 035: RMS=0.039 (target=0.015)
step 040: RMS=0.033 (target=0.015)
step 045: RMS=0.029 (target=0.015)
step 050: RMS=0.027 (target=0.015)
step 055: RMS=0.025 (target=0.015)
step 060: RMS=0.023 (target=0.015)
- inflation complete.
- inflation took 0.9 minutes
- mris_inflate utimesec 54.015788
- mris_inflate stimesec 0.150977
- mris_inflate ru_maxrss 231340
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 33374
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 11120
- mris_inflate ru_oublock 12376
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 4703
- mris_inflate ru_nivcsw 5524
- PIDs (1073 1076) completed and logs appended.
- #--------------------------------------------
- #@# Curv .H and .K lh Sat Oct 7 22:35:14 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- mris_curvature -w lh.white.preaparc
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- #--------------------------------------------
- #@# Curv .H and .K rh Sat Oct 7 22:35:14 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- mris_curvature -w rh.white.preaparc
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- reconbatchjobs /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts/recon-all.log mris_curvature_white_lh.cmd rm_curvature_white_lh.H.cmd ln_curvature_white_lh.H.cmd rm_curvature_white_lh.K.cmd ln_curvature_white_lh.K.cmd mris_curvature_inflated_lh.cmd mris_curvature_white_rh.cmd rm_curvature_white_rh.H.cmd ln_curvature_white_rh.H.cmd rm_curvature_white_rh.K.cmd ln_curvature_white_rh.K.cmd mris_curvature_inflated_rh.cmd
- Waiting for PID 1173 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1176 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1179 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1182 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1185 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1188 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1191 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1194 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1197 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1200 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1203 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- Waiting for PID 1207 of (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) to complete...
- mris_curvature -w lh.white.preaparc
- total integrated curvature = -4.759*4pi (-59.808) --> 6 handles
- ICI = 203.9, FI = 2164.5, variation=34143.194
- writing Gaussian curvature to ./lh.white.preaparc.K...done.
- writing mean curvature to ./lh.white.preaparc.H...done.
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 219 vertices thresholded to be in k1 ~ [-0.22 0.33], k2 ~ [-0.09 0.06]
- total integrated curvature = 0.496*4pi (6.231) --> 1 handles
- ICI = 1.5, FI = 10.1, variation=171.334
- 136 vertices thresholded to be in [-0.01 0.02]
- writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 170 vertices thresholded to be in [-0.13 0.15]
- done.
- writing mean curvature to ./lh.inflated.H...curvature mean = -0.016, std = 0.021
- done.
- mris_curvature -w rh.white.preaparc
- total integrated curvature = -15.109*4pi (-189.860) --> 16 handles
- ICI = 225.0, FI = 2470.5, variation=38862.856
- writing Gaussian curvature to ./rh.white.preaparc.K...done.
- writing mean curvature to ./rh.white.preaparc.H...done.
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 193 vertices thresholded to be in k1 ~ [-0.31 0.38], k2 ~ [-0.20 0.07]
- total integrated curvature = 0.343*4pi (4.313) --> 1 handles
- ICI = 1.5, FI = 10.1, variation=173.262
- 152 vertices thresholded to be in [-0.02 0.02]
- writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 131 vertices thresholded to be in [-0.15 0.10]
- done.
- writing mean curvature to ./rh.inflated.H...curvature mean = -0.016, std = 0.022
- done.
- PIDs (1173 1176 1179 1182 1185 1188 1191 1194 1197 1200 1203 1207) completed and logs appended.
- #-----------------------------------------
- #@# Curvature Stats lh Sat Oct 7 22:36:49 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm 0051366 lh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/lh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0051366/lh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 310 ]
- Gb_filter = 0
- WARN: S lookup min: -0.067158
- WARN: S explicit min: 0.000000 vertex = 565
- #-----------------------------------------
- #@# Curvature Stats rh Sat Oct 7 22:36:55 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm 0051366 rh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/rh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0051366/rh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 298 ]
- Gb_filter = 0
- WARN: S lookup min: -0.710398
- WARN: S explicit min: 0.000000 vertex = 1028
- #--------------------------------------------
- #@# Sphere lh Sat Oct 7 22:37:00 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- #--------------------------------------------
- #@# Sphere rh Sat Oct 7 22:37:00 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- Waiting for PID 1365 of (1365 1368) to complete...
- Waiting for PID 1368 of (1365 1368) to complete...
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.262...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %20.81
- pass 1: epoch 2 of 3 starting distance error %20.72
- unfolding complete - removing small folds...
- starting distance error %20.69
- removing remaining folds...
- final distance error %20.70
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 173 negative triangles
- 204: dt=0.9900, 173 negative triangles
- 205: dt=0.9900, 60 negative triangles
- 206: dt=0.9900, 32 negative triangles
- 207: dt=0.9900, 29 negative triangles
- 208: dt=0.9900, 22 negative triangles
- 209: dt=0.9900, 25 negative triangles
- 210: dt=0.9900, 20 negative triangles
- 211: dt=0.9900, 12 negative triangles
- 212: dt=0.9900, 7 negative triangles
- 213: dt=0.9900, 11 negative triangles
- 214: dt=0.9900, 7 negative triangles
- 215: dt=0.9900, 8 negative triangles
- 216: dt=0.9900, 8 negative triangles
- 217: dt=0.9900, 8 negative triangles
- 218: dt=0.9900, 8 negative triangles
- 219: dt=0.9900, 7 negative triangles
- 220: dt=0.9900, 3 negative triangles
- 221: dt=0.9900, 2 negative triangles
- 222: dt=0.9900, 2 negative triangles
- 223: dt=0.9900, 1 negative triangles
- 224: dt=0.9900, 3 negative triangles
- 225: dt=0.9900, 1 negative triangles
- 226: dt=0.9900, 1 negative triangles
- writing spherical brain to ../surf/lh.sphere
- spherical transformation took 1.15 hours
- mris_sphere utimesec 4346.433241
- mris_sphere stimesec 1.764731
- mris_sphere ru_maxrss 322596
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 56838
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 11072
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 126706
- mris_sphere ru_nivcsw 326670
- FSRUNTIME@ mris_sphere 1.1523 hours 1 threads
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.261...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %21.01
- pass 1: epoch 2 of 3 starting distance error %20.95
- unfolding complete - removing small folds...
- starting distance error %20.81
- removing remaining folds...
- final distance error %20.83
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 307 negative triangles
- 184: dt=0.9900, 307 negative triangles
- 185: dt=0.9900, 105 negative triangles
- 186: dt=0.9900, 60 negative triangles
- 187: dt=0.9900, 37 negative triangles
- 188: dt=0.9900, 29 negative triangles
- 189: dt=0.9900, 27 negative triangles
- 190: dt=0.9900, 16 negative triangles
- 191: dt=0.9900, 9 negative triangles
- 192: dt=0.9900, 12 negative triangles
- 193: dt=0.9900, 5 negative triangles
- 194: dt=0.9900, 5 negative triangles
- 195: dt=0.9900, 8 negative triangles
- 196: dt=0.9900, 2 negative triangles
- 197: dt=0.9900, 3 negative triangles
- 198: dt=0.9900, 1 negative triangles
- 199: dt=0.9900, 1 negative triangles
- writing spherical brain to ../surf/rh.sphere
- spherical transformation took 1.08 hours
- mris_sphere utimesec 3871.902381
- mris_sphere stimesec 1.569761
- mris_sphere ru_maxrss 324816
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 56897
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 11152
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 131683
- mris_sphere ru_nivcsw 316464
- FSRUNTIME@ mris_sphere 1.0762 hours 1 threads
- PIDs (1365 1368) completed and logs appended.
- #--------------------------------------------
- #@# Surf Reg lh Sat Oct 7 23:46:08 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- #--------------------------------------------
- #@# Surf Reg rh Sat Oct 7 23:46:08 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- Waiting for PID 4057 of (4057 4060) to complete...
- Waiting for PID 4060 of (4057 4060) to complete...
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/lh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 0
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading lh.sulc
- curvature mean = 0.000, std = 5.465
- curvature mean = 0.019, std = 0.815
- curvature mean = 0.022, std = 0.848
- Starting MRISrigidBodyAlignGlobal()
- d=32.00 min @ (0.00, -8.00, 8.00) sse = 343757.2, tmin=2.6044
- d=16.00 min @ (-4.00, 0.00, -4.00) sse = 322157.3, tmin=3.9269
- d=8.00 min @ (2.00, 0.00, 0.00) sse = 321601.5, tmin=5.2692
- d=4.00 min @ (-1.00, 0.00, 1.00) sse = 319364.8, tmin=6.6469
- d=2.00 min @ (0.00, 0.50, -0.50) sse = 319125.8, tmin=8.0151
- d=1.00 min @ (0.00, -0.25, 0.00) sse = 319085.9, tmin=9.3857
- d=0.50 min @ (0.00, 0.12, -0.12) sse = 319084.7, tmin=10.7579
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 10.76 min
- curvature mean = 0.007, std = 0.830
- curvature mean = 0.010, std = 0.942
- curvature mean = 0.005, std = 0.841
- curvature mean = 0.004, std = 0.976
- curvature mean = 0.004, std = 0.843
- curvature mean = 0.001, std = 0.991
- 2 Reading smoothwm
- curvature mean = -0.026, std = 0.322
- curvature mean = 0.041, std = 0.249
- curvature mean = 0.073, std = 0.291
- curvature mean = 0.037, std = 0.306
- curvature mean = 0.039, std = 0.464
- curvature mean = 0.036, std = 0.333
- curvature mean = 0.022, std = 0.604
- curvature mean = 0.036, std = 0.344
- curvature mean = 0.007, std = 0.726
- MRISregister() return, current seed 0
- -01: dt=0.0000, 47 negative triangles
- 115: dt=0.9900, 47 negative triangles
- expanding nbhd size to 1
- 116: dt=0.9900, 75 negative triangles
- 117: dt=0.9900, 48 negative triangles
- 118: dt=0.9900, 48 negative triangles
- 119: dt=0.9900, 42 negative triangles
- 120: dt=0.9900, 45 negative triangles
- 121: dt=0.9900, 40 negative triangles
- 122: dt=0.9900, 37 negative triangles
- 123: dt=0.9900, 27 negative triangles
- 124: dt=0.9900, 28 negative triangles
- 125: dt=0.9900, 22 negative triangles
- 126: dt=0.9900, 23 negative triangles
- 127: dt=0.9900, 19 negative triangles
- 128: dt=0.9900, 16 negative triangles
- 129: dt=0.9900, 9 negative triangles
- 130: dt=0.9900, 12 negative triangles
- 131: dt=0.9900, 5 negative triangles
- 132: dt=0.9900, 6 negative triangles
- 133: dt=0.9900, 7 negative triangles
- 134: dt=0.9900, 4 negative triangles
- 135: dt=0.9900, 3 negative triangles
- writing registered surface to ../surf/lh.sphere.reg...
- registration took 1.51 hours
- mris_register utimesec 5440.205962
- mris_register stimesec 5.658139
- mris_register ru_maxrss 283216
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 40325
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 0
- mris_register ru_oublock 11128
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 346039
- mris_register ru_nivcsw 254474
- FSRUNTIME@ mris_register 1.5128 hours 1 threads
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/rh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 1
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading rh.sulc
- curvature mean = -0.000, std = 5.426
- curvature mean = 0.038, std = 0.817
- curvature mean = 0.027, std = 0.845
- Starting MRISrigidBodyAlignGlobal()
- d=64.00 min @ (0.00, -16.00, 0.00) sse = 448289.3, tmin=1.3169
- d=32.00 min @ (8.00, 8.00, 0.00) sse = 391249.2, tmin=2.6434
- d=16.00 min @ (0.00, 0.00, 4.00) sse = 374206.1, tmin=3.9828
- d=4.00 min @ (-1.00, 1.00, 0.00) sse = 373715.2, tmin=6.6901
- d=2.00 min @ (0.50, -0.50, 0.00) sse = 373357.5, tmin=8.0514
- d=1.00 min @ (-0.25, 0.00, -0.25) sse = 373219.5, tmin=9.4264
- d=0.50 min @ (0.00, 0.12, 0.00) sse = 373217.9, tmin=10.8164
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 10.82 min
- curvature mean = -0.008, std = 0.810
- curvature mean = 0.010, std = 0.937
- curvature mean = -0.019, std = 0.812
- curvature mean = 0.004, std = 0.972
- curvature mean = -0.023, std = 0.811
- curvature mean = 0.000, std = 0.987
- 2 Reading smoothwm
- curvature mean = -0.031, std = 0.378
- curvature mean = 0.031, std = 0.240
- curvature mean = 0.064, std = 0.254
- curvature mean = 0.024, std = 0.300
- curvature mean = 0.036, std = 0.400
- curvature mean = 0.023, std = 0.327
- curvature mean = 0.020, std = 0.521
- curvature mean = 0.023, std = 0.339
- curvature mean = 0.004, std = 0.681
- MRISregister() return, current seed 0
- -01: dt=0.0000, 127 negative triangles
- 134: dt=0.9900, 127 negative triangles
- expanding nbhd size to 1
- 135: dt=0.9900, 148 negative triangles
- 136: dt=0.9900, 97 negative triangles
- 137: dt=0.9900, 94 negative triangles
- 138: dt=0.9900, 89 negative triangles
- 139: dt=0.9900, 81 negative triangles
- 140: dt=0.9900, 78 negative triangles
- 141: dt=0.9900, 72 negative triangles
- 142: dt=0.9900, 66 negative triangles
- 143: dt=0.9900, 59 negative triangles
- 144: dt=0.9900, 59 negative triangles
- 145: dt=0.9900, 51 negative triangles
- 146: dt=0.9900, 39 negative triangles
- 147: dt=0.9900, 37 negative triangles
- 148: dt=0.9900, 34 negative triangles
- 149: dt=0.9900, 31 negative triangles
- 150: dt=0.9900, 27 negative triangles
- 151: dt=0.9900, 29 negative triangles
- 152: dt=0.9900, 23 negative triangles
- 153: dt=0.9900, 24 negative triangles
- 154: dt=0.9900, 22 negative triangles
- 155: dt=0.9900, 23 negative triangles
- 156: dt=0.9900, 23 negative triangles
- 157: dt=0.9900, 21 negative triangles
- 158: dt=0.9900, 21 negative triangles
- 159: dt=0.9900, 22 negative triangles
- 160: dt=0.9900, 19 negative triangles
- 161: dt=0.9900, 18 negative triangles
- 162: dt=0.9900, 21 negative triangles
- 163: dt=0.9900, 16 negative triangles
- 164: dt=0.9900, 17 negative triangles
- 165: dt=0.9900, 20 negative triangles
- 166: dt=0.9900, 17 negative triangles
- 167: dt=0.9900, 16 negative triangles
- 168: dt=0.9900, 15 negative triangles
- 169: dt=0.9900, 17 negative triangles
- 170: dt=0.9900, 16 negative triangles
- 171: dt=0.9900, 14 negative triangles
- 172: dt=0.9900, 11 negative triangles
- 173: dt=0.9900, 9 negative triangles
- 174: dt=0.9900, 9 negative triangles
- 175: dt=0.9900, 8 negative triangles
- 176: dt=0.9900, 7 negative triangles
- 177: dt=0.9900, 5 negative triangles
- 178: dt=0.9900, 7 negative triangles
- 179: dt=0.9900, 5 negative triangles
- 180: dt=0.9900, 7 negative triangles
- 181: dt=0.9900, 6 negative triangles
- 182: dt=0.9900, 7 negative triangles
- 183: dt=0.9900, 4 negative triangles
- 184: dt=0.9900, 5 negative triangles
- 185: dt=0.9900, 4 negative triangles
- 186: dt=0.9900, 3 negative triangles
- 187: dt=0.9900, 1 negative triangles
- 188: dt=0.9900, 1 negative triangles
- 189: dt=0.9900, 1 negative triangles
- writing registered surface to ../surf/rh.sphere.reg...
- registration took 1.87 hours
- mris_register utimesec 7652.911580
- mris_register stimesec 6.896951
- mris_register ru_maxrss 286168
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 40195
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 11120
- mris_register ru_oublock 11208
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 420861
- mris_register ru_nivcsw 259193
- FSRUNTIME@ mris_register 1.8718 hours 1 threads
- PIDs (4057 4060) completed and logs appended.
- #--------------------------------------------
- #@# Jacobian white lh Sun Oct 8 01:38:27 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- #--------------------------------------------
- #@# Jacobian white rh Sun Oct 8 01:38:27 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- Waiting for PID 14357 of (14357 14361) to complete...
- Waiting for PID 14361 of (14357 14361) to complete...
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- reading surface from ../surf/lh.white.preaparc...
- writing curvature file ../surf/lh.jacobian_white
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- reading surface from ../surf/rh.white.preaparc...
- writing curvature file ../surf/rh.jacobian_white
- PIDs (14357 14361) completed and logs appended.
- #--------------------------------------------
- #@# AvgCurv lh Sun Oct 8 01:38:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- #--------------------------------------------
- #@# AvgCurv rh Sun Oct 8 01:38:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- Waiting for PID 14453 of (14453 14456) to complete...
- Waiting for PID 14456 of (14453 14456) to complete...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/lh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/lh.avg_curv...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/rh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/rh.avg_curv...
- PIDs (14453 14456) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc lh Sun Oct 8 01:38:31 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- #-----------------------------------------
- #@# Cortical Parc rh Sun Oct 8 01:38:31 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- Waiting for PID 14532 of (14532 14535) to complete...
- Waiting for PID 14535 of (14532 14535) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.8 using min determinant for regularization = 0.006
- 0 singular and 342 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1009 labels changed using aseg
- relabeling using gibbs priors...
- 000: 3358 changed, 156857 examined...
- 001: 782 changed, 14248 examined...
- 002: 184 changed, 4311 examined...
- 003: 59 changed, 1086 examined...
- 004: 32 changed, 378 examined...
- 005: 19 changed, 182 examined...
- 006: 5 changed, 96 examined...
- 007: 1 changed, 29 examined...
- 008: 0 changed, 8 examined...
- 247 labels changed using aseg
- 000: 112 total segments, 69 labels (298 vertices) changed
- 001: 43 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 5 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1898 vertices marked for relabeling...
- 1898 labels changed in reclassification.
- writing output to ../label/lh.aparc.annot...
- classification took 0 minutes and 16 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.7 using min determinant for regularization = 0.004
- 0 singular and 309 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1253 labels changed using aseg
- relabeling using gibbs priors...
- 000: 3088 changed, 158014 examined...
- 001: 743 changed, 13234 examined...
- 002: 180 changed, 4110 examined...
- 003: 44 changed, 1125 examined...
- 004: 10 changed, 285 examined...
- 005: 3 changed, 65 examined...
- 006: 0 changed, 21 examined...
- 148 labels changed using aseg
- 000: 104 total segments, 65 labels (312 vertices) changed
- 001: 41 total segments, 2 labels (2 vertices) changed
- 002: 39 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 10 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 2276 vertices marked for relabeling...
- 2276 labels changed in reclassification.
- writing output to ../label/rh.aparc.annot...
- classification took 0 minutes and 16 seconds.
- PIDs (14532 14535) completed and logs appended.
- #--------------------------------------------
- #@# Make Pial Surf lh Sun Oct 8 01:38:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051366 lh
- #--------------------------------------------
- #@# Make Pial Surf rh Sun Oct 8 01:38:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051366 rh
- Waiting for PID 14842 of (14842 14845) to complete...
- Waiting for PID 14845 of (14842 14845) to complete...
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051366 lh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- 43106 bright wm thresholded.
- 553 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.orig...
- computing class statistics...
- border white: 293163 voxels (1.75%)
- border gray 328515 voxels (1.96%)
- WM (96.0): 96.1 +- 9.5 [70.0 --> 110.0]
- GM (67.0) : 67.0 +- 10.6 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 53.4 (was 70)
- setting MAX_BORDER_WHITE to 110.5 (was 105)
- setting MIN_BORDER_WHITE to 64.0 (was 85)
- setting MAX_CSF to 42.8 (was 40)
- setting MAX_GRAY to 91.5 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 53.4 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 32.2 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=101+-8.7, GM=64+-7.0
- mean inside = 90.9, mean outside = 70.1
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.89 +- 0.26 (0.05-->5.35) (max @ vno 116632 --> 117588)
- face area 0.33 +- 0.16 (0.00-->5.45)
- mean absolute distance = 0.61 +- 0.80
- 2721 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 22 points - only 0.00% unknown
- deleting segment 1 with 42 points - only 0.00% unknown
- deleting segment 2 with 9 points - only 0.00% unknown
- deleting segment 5 with 508 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 6 with 2 points - only 0.00% unknown
- deleting segment 7 with 6 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 8 with 1 points - only 0.00% unknown
- deleting segment 9 with 35 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 10 with 3 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 11 with 1 points - only 0.00% unknown
- mean border=75.3, 233 (229) missing vertices, mean dist 0.4 [1.1 (%10.7)->0.6 (%89.3))]
- %61 local maxima, %35 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.91 +- 0.27 (0.07-->5.55) (max @ vno 117588 --> 116632)
- face area 0.33 +- 0.17 (0.00-->4.39)
- mean absolute distance = 0.35 +- 0.56
- 3496 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3133288.0, rms=8.923
- 001: dt: 0.5000, sse=1538893.9, rms=5.147 (42.314%)
- 002: dt: 0.5000, sse=1224425.4, rms=4.038 (21.551%)
- 003: dt: 0.5000, sse=1207514.5, rms=3.973 (1.600%)
- 004: dt: 0.5000, sse=1150645.1, rms=3.730 (6.112%)
- rms = 3.91, time step reduction 1 of 3 to 0.250...
- 005: dt: 0.2500, sse=959023.6, rms=2.697 (27.694%)
- 006: dt: 0.2500, sse=904866.3, rms=2.295 (14.912%)
- 007: dt: 0.2500, sse=882088.8, rms=2.128 (7.286%)
- rms = 2.10, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=877645.1, rms=2.099 (1.347%)
- 009: dt: 0.1250, sse=865001.5, rms=1.991 (5.150%)
- rms = 1.98, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=864061.6, rms=1.978 (0.640%)
- positioning took 1.3 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 25 points - only 0.00% unknown
- deleting segment 1 with 51 points - only 0.00% unknown
- deleting segment 2 with 9 points - only 0.00% unknown
- deleting segment 4 with 374 points - only 0.00% unknown
- deleting segment 5 with 5 points - only 0.00% unknown
- deleting segment 6 with 26 points - only 0.00% unknown
- deleting segment 7 with 26 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 8 with 1 points - only 0.00% unknown
- mean border=79.4, 143 (61) missing vertices, mean dist -0.2 [0.4 (%75.7)->0.2 (%24.3))]
- %78 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.89 +- 0.27 (0.07-->5.76) (max @ vno 117588 --> 116632)
- face area 0.35 +- 0.18 (0.00-->5.26)
- mean absolute distance = 0.25 +- 0.38
- 4083 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1616256.8, rms=5.273
- 011: dt: 0.5000, sse=1165360.0, rms=3.548 (32.711%)
- rms = 3.79, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=985268.1, rms=2.588 (27.062%)
- 013: dt: 0.2500, sse=910927.2, rms=2.036 (21.313%)
- 014: dt: 0.2500, sse=881500.3, rms=1.790 (12.072%)
- 015: dt: 0.2500, sse=876664.2, rms=1.736 (3.047%)
- rms = 1.71, time step reduction 2 of 3 to 0.125...
- 016: dt: 0.2500, sse=873086.5, rms=1.708 (1.626%)
- 017: dt: 0.1250, sse=861416.8, rms=1.589 (6.950%)
- rms = 1.58, time step reduction 3 of 3 to 0.062...
- 018: dt: 0.1250, sse=861023.2, rms=1.584 (0.312%)
- positioning took 1.0 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 23 points - only 0.00% unknown
- deleting segment 1 with 49 points - only 0.00% unknown
- deleting segment 2 with 9 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 4 with 367 points - only 0.00% unknown
- deleting segment 6 with 5 points - only 0.00% unknown
- deleting segment 7 with 26 points - only 0.00% unknown
- deleting segment 8 with 29 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 9 with 1 points - only 0.00% unknown
- mean border=81.9, 145 (44) missing vertices, mean dist -0.1 [0.3 (%69.3)->0.2 (%30.7))]
- %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.89 +- 0.27 (0.04-->5.74) (max @ vno 117588 --> 116632)
- face area 0.34 +- 0.17 (0.00-->5.32)
- mean absolute distance = 0.22 +- 0.31
- 4001 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1114614.1, rms=3.426
- rms = 3.45, time step reduction 1 of 3 to 0.250...
- 019: dt: 0.2500, sse=949453.0, rms=2.480 (27.614%)
- 020: dt: 0.2500, sse=859255.2, rms=1.738 (29.914%)
- 021: dt: 0.2500, sse=848310.8, rms=1.594 (8.279%)
- rms = 1.56, time step reduction 2 of 3 to 0.125...
- 022: dt: 0.2500, sse=838516.8, rms=1.559 (2.187%)
- 023: dt: 0.1250, sse=832485.7, rms=1.438 (7.790%)
- rms = 1.43, time step reduction 3 of 3 to 0.062...
- 024: dt: 0.1250, sse=829029.8, rms=1.432 (0.379%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 24 points - only 0.00% unknown
- deleting segment 1 with 53 points - only 0.00% unknown
- deleting segment 2 with 9 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 4 with 387 points - only 0.00% unknown
- deleting segment 6 with 16 points - only 0.00% unknown
- deleting segment 7 with 7 points - only 14.29% unknown
- deleting segment 8 with 36 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 9 with 1 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 10 with 1 points - only 0.00% unknown
- mean border=82.8, 170 (36) missing vertices, mean dist -0.0 [0.2 (%55.1)->0.2 (%44.9))]
- %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=855246.9, rms=1.790
- rms = 2.21, time step reduction 1 of 3 to 0.250...
- 025: dt: 0.2500, sse=805201.6, rms=1.270 (29.051%)
- 026: dt: 0.2500, sse=794618.2, rms=1.065 (16.120%)
- rms = 1.07, time step reduction 2 of 3 to 0.125...
- rms = 1.06, time step reduction 3 of 3 to 0.062...
- 027: dt: 0.1250, sse=790442.9, rms=1.057 (0.725%)
- positioning took 0.5 minutes
- generating cortex label...
- 12 non-cortical segments detected
- only using segment with 8895 vertices
- erasing segment 0 (vno[0] = 33766)
- erasing segment 1 (vno[0] = 34829)
- erasing segment 2 (vno[0] = 42414)
- erasing segment 4 (vno[0] = 79656)
- erasing segment 5 (vno[0] = 98688)
- erasing segment 6 (vno[0] = 109633)
- erasing segment 7 (vno[0] = 110688)
- erasing segment 8 (vno[0] = 114601)
- erasing segment 9 (vno[0] = 114622)
- erasing segment 10 (vno[0] = 115516)
- erasing segment 11 (vno[0] = 116622)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.area
- vertex spacing 0.89 +- 0.27 (0.06-->5.84) (max @ vno 116632 --> 117588)
- face area 0.33 +- 0.17 (0.00-->5.22)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 14 points - only 0.00% unknown
- deleting segment 1 with 34 points - only 0.00% unknown
- deleting segment 4 with 8 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 5 with 1 points - only 0.00% unknown
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=51.3, 225 (225) missing vertices, mean dist 1.9 [1.8 (%0.0)->2.8 (%100.0))]
- %15 local maxima, %52 large gradients and %29 min vals, 288 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=31490192.0, rms=32.057
- 001: dt: 0.0500, sse=27294734.0, rms=29.789 (7.074%)
- 002: dt: 0.0500, sse=24327644.0, rms=28.075 (5.755%)
- 003: dt: 0.0500, sse=22096706.0, rms=26.713 (4.850%)
- 004: dt: 0.0500, sse=20333928.0, rms=25.586 (4.219%)
- 005: dt: 0.0500, sse=18886706.0, rms=24.622 (3.768%)
- 006: dt: 0.0500, sse=17662476.0, rms=23.776 (3.436%)
- 007: dt: 0.0500, sse=16605295.0, rms=23.021 (3.178%)
- 008: dt: 0.0500, sse=15675526.0, rms=22.335 (2.979%)
- 009: dt: 0.0500, sse=14848324.0, rms=21.707 (2.813%)
- 010: dt: 0.0500, sse=14104672.0, rms=21.126 (2.676%)
- positioning took 1.1 minutes
- mean border=51.2, 128 (91) missing vertices, mean dist 1.6 [0.3 (%0.0)->2.2 (%100.0))]
- %15 local maxima, %52 large gradients and %28 min vals, 253 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=14883800.0, rms=21.734
- 011: dt: 0.0500, sse=14205346.0, rms=21.206 (2.430%)
- 012: dt: 0.0500, sse=13586753.0, rms=20.713 (2.327%)
- 013: dt: 0.0500, sse=13020589.0, rms=20.251 (2.231%)
- 014: dt: 0.0500, sse=12501010.0, rms=19.817 (2.141%)
- 015: dt: 0.0500, sse=12022861.0, rms=19.409 (2.057%)
- 016: dt: 0.0500, sse=11581806.0, rms=19.025 (1.978%)
- 017: dt: 0.0500, sse=11173406.0, rms=18.663 (1.906%)
- 018: dt: 0.0500, sse=10795299.0, rms=18.321 (1.833%)
- 019: dt: 0.0500, sse=10443714.0, rms=17.997 (1.769%)
- 020: dt: 0.0500, sse=10116727.0, rms=17.690 (1.705%)
- positioning took 1.1 minutes
- mean border=51.1, 135 (71) missing vertices, mean dist 1.3 [0.1 (%0.8)->1.9 (%99.2))]
- %16 local maxima, %52 large gradients and %28 min vals, 236 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=10208741.0, rms=17.785
- 021: dt: 0.0500, sse=9896035.0, rms=17.488 (1.669%)
- 022: dt: 0.0500, sse=9603139.0, rms=17.205 (1.617%)
- 023: dt: 0.0500, sse=9326293.0, rms=16.933 (1.579%)
- 024: dt: 0.0500, sse=9065579.0, rms=16.673 (1.535%)
- 025: dt: 0.0500, sse=8819463.0, rms=16.424 (1.495%)
- 026: dt: 0.0500, sse=8586171.0, rms=16.184 (1.460%)
- 027: dt: 0.0500, sse=8363076.5, rms=15.951 (1.439%)
- 028: dt: 0.0500, sse=8147870.0, rms=15.724 (1.429%)
- 029: dt: 0.0500, sse=7939456.5, rms=15.500 (1.425%)
- 030: dt: 0.0500, sse=7737290.5, rms=15.279 (1.422%)
- positioning took 1.1 minutes
- mean border=50.9, 175 (59) missing vertices, mean dist 1.1 [0.1 (%5.8)->1.7 (%94.2))]
- %16 local maxima, %52 large gradients and %28 min vals, 233 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=7845786.0, rms=15.399
- 031: dt: 0.5000, sse=6353841.0, rms=13.680 (11.166%)
- 032: dt: 0.5000, sse=5237529.0, rms=12.229 (10.603%)
- 033: dt: 0.5000, sse=4371828.5, rms=10.976 (10.250%)
- 034: dt: 0.5000, sse=3697458.0, rms=9.881 (9.974%)
- 035: dt: 0.5000, sse=3182552.5, rms=8.958 (9.345%)
- 036: dt: 0.5000, sse=2779093.2, rms=8.156 (8.955%)
- 037: dt: 0.5000, sse=2467834.5, rms=7.483 (8.251%)
- 038: dt: 0.5000, sse=2220226.2, rms=6.896 (7.835%)
- 039: dt: 0.5000, sse=2038651.2, rms=6.438 (6.653%)
- 040: dt: 0.5000, sse=1902080.2, rms=6.064 (5.809%)
- 041: dt: 0.5000, sse=1810936.2, rms=5.805 (4.258%)
- 042: dt: 0.5000, sse=1745676.2, rms=5.609 (3.385%)
- 043: dt: 0.5000, sse=1705623.6, rms=5.488 (2.155%)
- 044: dt: 0.5000, sse=1676459.9, rms=5.394 (1.717%)
- 045: dt: 0.5000, sse=1658628.2, rms=5.338 (1.037%)
- 046: dt: 0.5000, sse=1643158.6, rms=5.285 (0.985%)
- rms = 5.25, time step reduction 1 of 3 to 0.250...
- 047: dt: 0.5000, sse=1632047.5, rms=5.251 (0.657%)
- 048: dt: 0.2500, sse=1471409.2, rms=4.653 (11.389%)
- 049: dt: 0.2500, sse=1421880.9, rms=4.471 (3.912%)
- rms = 4.48, time step reduction 2 of 3 to 0.125...
- 050: dt: 0.1250, sse=1408378.8, rms=4.416 (1.226%)
- 051: dt: 0.1250, sse=1390820.2, rms=4.342 (1.668%)
- rms = 4.33, time step reduction 3 of 3 to 0.062...
- 052: dt: 0.1250, sse=1389293.5, rms=4.334 (0.185%)
- positioning took 3.2 minutes
- mean border=49.2, 1970 (14) missing vertices, mean dist 0.2 [0.2 (%42.4)->0.5 (%57.6))]
- %34 local maxima, %35 large gradients and %25 min vals, 163 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1823731.9, rms=5.049
- 053: dt: 0.5000, sse=1713923.2, rms=4.675 (7.400%)
- 054: dt: 0.5000, sse=1687565.1, rms=4.624 (1.109%)
- rms = 4.68, time step reduction 1 of 3 to 0.250...
- 055: dt: 0.2500, sse=1505766.6, rms=3.852 (16.698%)
- 056: dt: 0.2500, sse=1452909.8, rms=3.590 (6.778%)
- rms = 3.54, time step reduction 2 of 3 to 0.125...
- 057: dt: 0.2500, sse=1443640.4, rms=3.544 (1.301%)
- 058: dt: 0.1250, sse=1402344.2, rms=3.329 (6.051%)
- rms = 3.29, time step reduction 3 of 3 to 0.062...
- 059: dt: 0.1250, sse=1394331.9, rms=3.289 (1.212%)
- positioning took 1.2 minutes
- mean border=48.0, 2144 (11) missing vertices, mean dist 0.1 [0.2 (%42.4)->0.3 (%57.6))]
- %49 local maxima, %21 large gradients and %24 min vals, 136 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1503652.5, rms=3.790
- rms = 4.30, time step reduction 1 of 3 to 0.250...
- 060: dt: 0.2500, sse=1432283.5, rms=3.449 (8.984%)
- 061: dt: 0.2500, sse=1411723.1, rms=3.348 (2.942%)
- rms = 3.33, time step reduction 2 of 3 to 0.125...
- 062: dt: 0.2500, sse=1405873.9, rms=3.330 (0.517%)
- 063: dt: 0.1250, sse=1380477.5, rms=3.192 (4.148%)
- rms = 3.16, time step reduction 3 of 3 to 0.062...
- 064: dt: 0.1250, sse=1374532.9, rms=3.163 (0.899%)
- positioning took 1.0 minutes
- mean border=47.3, 4035 (11) missing vertices, mean dist 0.0 [0.2 (%46.7)->0.3 (%53.3))]
- %52 local maxima, %17 large gradients and %23 min vals, 150 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- writing smoothed curvature to lh.curv.pial
- 000: dt: 0.0000, sse=1400944.9, rms=3.295
- rms = 3.87, time step reduction 1 of 3 to 0.250...
- 065: dt: 0.2500, sse=1375072.6, rms=3.156 (4.225%)
- rms = 3.12, time step reduction 2 of 3 to 0.125...
- 066: dt: 0.2500, sse=1364693.4, rms=3.118 (1.203%)
- 067: dt: 0.1250, sse=1351818.8, rms=3.043 (2.411%)
- rms = 3.01, time step reduction 3 of 3 to 0.062...
- 068: dt: 0.1250, sse=1345524.6, rms=3.014 (0.940%)
- positioning took 0.8 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.curv.pial
- writing smoothed area to lh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.area.pial
- vertex spacing 1.02 +- 0.46 (0.08-->7.98) (max @ vno 104469 --> 104470)
- face area 0.41 +- 0.34 (0.00-->7.69)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 156857 vertices processed
- 25000 of 156857 vertices processed
- 50000 of 156857 vertices processed
- 75000 of 156857 vertices processed
- 100000 of 156857 vertices processed
- 125000 of 156857 vertices processed
- 150000 of 156857 vertices processed
- 0 of 156857 vertices processed
- 25000 of 156857 vertices processed
- 50000 of 156857 vertices processed
- 75000 of 156857 vertices processed
- 100000 of 156857 vertices processed
- 125000 of 156857 vertices processed
- 150000 of 156857 vertices processed
- thickness calculation complete, 323:1106 truncations.
- 32554 vertices at 0 distance
- 103601 vertices at 1 distance
- 99154 vertices at 2 distance
- 43946 vertices at 3 distance
- 13993 vertices at 4 distance
- 3969 vertices at 5 distance
- 1336 vertices at 6 distance
- 506 vertices at 7 distance
- 203 vertices at 8 distance
- 95 vertices at 9 distance
- 63 vertices at 10 distance
- 50 vertices at 11 distance
- 33 vertices at 12 distance
- 22 vertices at 13 distance
- 25 vertices at 14 distance
- 15 vertices at 15 distance
- 12 vertices at 16 distance
- 7 vertices at 17 distance
- 1 vertices at 18 distance
- 6 vertices at 19 distance
- 5 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.thickness
- positioning took 17.3 minutes
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051366 rh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- 43106 bright wm thresholded.
- 553 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.orig...
- computing class statistics...
- border white: 293163 voxels (1.75%)
- border gray 328515 voxels (1.96%)
- WM (96.0): 96.1 +- 9.5 [70.0 --> 110.0]
- GM (67.0) : 67.0 +- 10.6 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 55.4 (was 70)
- setting MAX_BORDER_WHITE to 111.5 (was 105)
- setting MIN_BORDER_WHITE to 66.0 (was 85)
- setting MAX_CSF to 44.8 (was 40)
- setting MAX_GRAY to 92.5 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 55.4 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 34.2 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-8.7, GM=66+-7.8
- mean inside = 91.3, mean outside = 71.4
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.88 +- 0.26 (0.02-->5.53) (max @ vno 157202 --> 157227)
- face area 0.32 +- 0.16 (0.00-->8.03)
- mean absolute distance = 0.63 +- 0.81
- 3130 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 32 points - only 0.00% unknown
- deleting segment 1 with 26 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 4 with 342 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 5 with 1 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 6 with 1 points - only 0.00% unknown
- deleting segment 7 with 46 points - only 0.00% unknown
- deleting segment 8 with 19 points - only 0.00% unknown
- deleting segment 9 with 16 points - only 0.00% unknown
- mean border=77.6, 206 (206) missing vertices, mean dist 0.4 [1.0 (%11.8)->0.6 (%88.2))]
- %62 local maxima, %34 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.26 (0.02-->5.48) (max @ vno 157202 --> 157227)
- face area 0.32 +- 0.16 (0.00-->7.27)
- mean absolute distance = 0.37 +- 0.55
- 4058 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=2937409.2, rms=8.524
- 001: dt: 0.5000, sse=1492880.2, rms=4.976 (41.622%)
- 002: dt: 0.5000, sse=1172825.5, rms=3.822 (23.195%)
- 003: dt: 0.5000, sse=1147871.5, rms=3.746 (1.995%)
- 004: dt: 0.5000, sse=1096835.2, rms=3.509 (6.324%)
- rms = 3.69, time step reduction 1 of 3 to 0.250...
- 005: dt: 0.2500, sse=928170.8, rms=2.554 (27.219%)
- 006: dt: 0.2500, sse=877645.1, rms=2.158 (15.498%)
- 007: dt: 0.2500, sse=859687.9, rms=2.016 (6.582%)
- rms = 1.99, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=855696.6, rms=1.986 (1.471%)
- 009: dt: 0.1250, sse=845241.9, rms=1.891 (4.779%)
- rms = 1.88, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=843313.8, rms=1.878 (0.706%)
- positioning took 1.3 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 22 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 1 with 4 points - only 0.00% unknown
- deleting segment 2 with 37 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 4 with 179 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 5 with 2 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 6 with 3 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 7 with 2 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 8 with 2 points - only 0.00% unknown
- mean border=81.5, 110 (20) missing vertices, mean dist -0.2 [0.4 (%75.5)->0.2 (%24.5))]
- %78 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.88 +- 0.26 (0.07-->5.44) (max @ vno 157202 --> 157227)
- face area 0.34 +- 0.17 (0.00-->8.60)
- mean absolute distance = 0.26 +- 0.39
- 4534 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1566499.0, rms=5.123
- 011: dt: 0.5000, sse=1141758.2, rms=3.473 (32.207%)
- rms = 3.61, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=981933.1, rms=2.614 (24.733%)
- 013: dt: 0.2500, sse=902486.3, rms=2.042 (21.867%)
- 014: dt: 0.2500, sse=872151.1, rms=1.777 (13.005%)
- 015: dt: 0.2500, sse=863398.0, rms=1.689 (4.937%)
- rms = 1.65, time step reduction 2 of 3 to 0.125...
- 016: dt: 0.2500, sse=860219.6, rms=1.649 (2.387%)
- 017: dt: 0.1250, sse=849708.6, rms=1.551 (5.922%)
- rms = 1.54, time step reduction 3 of 3 to 0.062...
- 018: dt: 0.1250, sse=850156.5, rms=1.544 (0.454%)
- positioning took 1.0 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 35 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 1 with 3 points - only 0.00% unknown
- deleting segment 2 with 54 points - only 0.00% unknown
- deleting segment 3 with 195 points - only 0.00% unknown
- deleting segment 4 with 11 points - only 0.00% unknown
- deleting segment 5 with 13 points - only 0.00% unknown
- deleting segment 6 with 15 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 7 with 1 points - only 0.00% unknown
- deleting segment 8 with 7 points - only 0.00% unknown
- mean border=83.8, 121 (16) missing vertices, mean dist -0.1 [0.3 (%69.0)->0.2 (%31.0))]
- %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.88 +- 0.26 (0.06-->5.42) (max @ vno 157707 --> 157706)
- face area 0.33 +- 0.17 (0.00-->9.42)
- mean absolute distance = 0.22 +- 0.33
- 3561 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1078723.0, rms=3.276
- 019: dt: 0.5000, sse=1069779.8, rms=3.167 (3.320%)
- rms = 3.51, time step reduction 1 of 3 to 0.250...
- 020: dt: 0.2500, sse=896767.2, rms=2.140 (32.416%)
- 021: dt: 0.2500, sse=855935.4, rms=1.704 (20.382%)
- 022: dt: 0.2500, sse=831682.8, rms=1.579 (7.338%)
- rms = 1.56, time step reduction 2 of 3 to 0.125...
- 023: dt: 0.2500, sse=830445.0, rms=1.563 (1.011%)
- 024: dt: 0.1250, sse=817338.8, rms=1.435 (8.225%)
- rms = 1.43, time step reduction 3 of 3 to 0.062...
- 025: dt: 0.1250, sse=817439.5, rms=1.426 (0.613%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 44 points - only 0.00% unknown
- deleting segment 1 with 56 points - only 0.00% unknown
- deleting segment 2 with 242 points - only 0.00% unknown
- deleting segment 3 with 19 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 4 with 3 points - only 0.00% unknown
- deleting segment 5 with 15 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 6 with 1 points - only 0.00% unknown
- deleting segment 7 with 7 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 8 with 1 points - only 0.00% unknown
- mean border=84.6, 119 (8) missing vertices, mean dist -0.0 [0.2 (%55.2)->0.2 (%44.8))]
- %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=843984.2, rms=1.777
- rms = 2.10, time step reduction 1 of 3 to 0.250...
- 026: dt: 0.2500, sse=798451.9, rms=1.290 (27.419%)
- 027: dt: 0.2500, sse=793726.5, rms=1.078 (16.451%)
- rms = 1.09, time step reduction 2 of 3 to 0.125...
- rms = 1.07, time step reduction 3 of 3 to 0.062...
- 028: dt: 0.1250, sse=784358.6, rms=1.071 (0.610%)
- positioning took 0.5 minutes
- generating cortex label...
- 22 non-cortical segments detected
- only using segment with 8186 vertices
- erasing segment 0 (vno[0] = 43892)
- erasing segment 1 (vno[0] = 45961)
- erasing segment 2 (vno[0] = 51812)
- erasing segment 4 (vno[0] = 84021)
- erasing segment 5 (vno[0] = 93731)
- erasing segment 6 (vno[0] = 97342)
- erasing segment 7 (vno[0] = 100330)
- erasing segment 8 (vno[0] = 107226)
- erasing segment 9 (vno[0] = 109386)
- erasing segment 10 (vno[0] = 111413)
- erasing segment 11 (vno[0] = 111427)
- erasing segment 12 (vno[0] = 111659)
- erasing segment 13 (vno[0] = 113431)
- erasing segment 14 (vno[0] = 113484)
- erasing segment 15 (vno[0] = 114507)
- erasing segment 16 (vno[0] = 114588)
- erasing segment 17 (vno[0] = 116527)
- erasing segment 18 (vno[0] = 117456)
- erasing segment 19 (vno[0] = 121476)
- erasing segment 20 (vno[0] = 122477)
- erasing segment 21 (vno[0] = 124332)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.area
- vertex spacing 0.88 +- 0.27 (0.02-->5.47) (max @ vno 157706 --> 157707)
- face area 0.33 +- 0.17 (0.00-->9.19)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 38 points - only 0.00% unknown
- deleting segment 1 with 60 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=53.6, 228 (228) missing vertices, mean dist 1.9 [0.6 (%0.0)->2.8 (%100.0))]
- %15 local maxima, %47 large gradients and %33 min vals, 297 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=30933916.0, rms=31.601
- 001: dt: 0.0500, sse=26917948.0, rms=29.424 (6.887%)
- 002: dt: 0.0500, sse=24084362.0, rms=27.786 (5.568%)
- 003: dt: 0.0500, sse=21954720.0, rms=26.488 (4.672%)
- 004: dt: 0.0500, sse=20271392.0, rms=25.415 (4.051%)
- 005: dt: 0.0500, sse=18888556.0, rms=24.498 (3.607%)
- 006: dt: 0.0500, sse=17719546.0, rms=23.696 (3.276%)
- 007: dt: 0.0500, sse=16709236.0, rms=22.979 (3.023%)
- 008: dt: 0.0500, sse=15821073.0, rms=22.331 (2.823%)
- 009: dt: 0.0500, sse=15030295.0, rms=21.737 (2.660%)
- 010: dt: 0.0500, sse=14318786.0, rms=21.188 (2.524%)
- positioning took 1.1 minutes
- mean border=53.4, 139 (87) missing vertices, mean dist 1.5 [0.4 (%0.1)->2.3 (%99.9))]
- %16 local maxima, %47 large gradients and %32 min vals, 250 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=15197762.0, rms=21.863
- 011: dt: 0.0500, sse=14547631.0, rms=21.365 (2.275%)
- 012: dt: 0.0500, sse=13955059.0, rms=20.902 (2.170%)
- 013: dt: 0.0500, sse=13412898.0, rms=20.468 (2.074%)
- 014: dt: 0.0500, sse=12914004.0, rms=20.061 (1.990%)
- 015: dt: 0.0500, sse=12454185.0, rms=19.678 (1.909%)
- 016: dt: 0.0500, sse=12029164.0, rms=19.317 (1.833%)
- 017: dt: 0.0500, sse=11634887.0, rms=18.976 (1.764%)
- 018: dt: 0.0500, sse=11269020.0, rms=18.655 (1.696%)
- 019: dt: 0.0500, sse=10928030.0, rms=18.349 (1.636%)
- 020: dt: 0.0500, sse=10609742.0, rms=18.060 (1.578%)
- positioning took 1.1 minutes
- mean border=53.3, 147 (61) missing vertices, mean dist 1.3 [0.1 (%0.9)->2.0 (%99.1))]
- %17 local maxima, %47 large gradients and %32 min vals, 260 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=10732232.0, rms=18.178
- 021: dt: 0.0500, sse=10427000.0, rms=17.898 (1.542%)
- 022: dt: 0.0500, sse=10140707.0, rms=17.631 (1.491%)
- 023: dt: 0.0500, sse=9869196.0, rms=17.374 (1.458%)
- 024: dt: 0.0500, sse=9612782.0, rms=17.128 (1.418%)
- 025: dt: 0.0500, sse=9370261.0, rms=16.891 (1.380%)
- 026: dt: 0.0500, sse=9139249.0, rms=16.663 (1.352%)
- 027: dt: 0.0500, sse=8916892.0, rms=16.440 (1.337%)
- 028: dt: 0.0500, sse=8701404.0, rms=16.221 (1.332%)
- 029: dt: 0.0500, sse=8491838.0, rms=16.005 (1.330%)
- 030: dt: 0.0500, sse=8287217.5, rms=15.792 (1.335%)
- positioning took 1.1 minutes
- mean border=53.2, 173 (48) missing vertices, mean dist 1.1 [0.1 (%6.1)->1.8 (%93.9))]
- %17 local maxima, %47 large gradients and %32 min vals, 210 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=8395813.0, rms=15.906
- 031: dt: 0.5000, sse=6865207.5, rms=14.222 (10.586%)
- 032: dt: 0.5000, sse=5667295.5, rms=12.743 (10.399%)
- 033: dt: 0.5000, sse=4709432.0, rms=11.426 (10.339%)
- 034: dt: 0.5000, sse=3959049.5, rms=10.270 (10.119%)
- 035: dt: 0.5000, sse=3392632.8, rms=9.303 (9.410%)
- 036: dt: 0.5000, sse=2953244.2, rms=8.474 (8.919%)
- 037: dt: 0.5000, sse=2601352.2, rms=7.748 (8.560%)
- 038: dt: 0.5000, sse=2318431.8, rms=7.109 (8.252%)
- 039: dt: 0.5000, sse=2104250.2, rms=6.586 (7.351%)
- 040: dt: 0.5000, sse=1944261.5, rms=6.163 (6.426%)
- 041: dt: 0.5000, sse=1840104.0, rms=5.875 (4.673%)
- 042: dt: 0.5000, sse=1766174.9, rms=5.657 (3.712%)
- 043: dt: 0.5000, sse=1720178.2, rms=5.519 (2.433%)
- 044: dt: 0.5000, sse=1687800.2, rms=5.417 (1.858%)
- 045: dt: 0.5000, sse=1665108.0, rms=5.347 (1.288%)
- 046: dt: 0.5000, sse=1647971.8, rms=5.290 (1.065%)
- rms = 5.26, time step reduction 1 of 3 to 0.250...
- 047: dt: 0.5000, sse=1637689.8, rms=5.259 (0.589%)
- 048: dt: 0.2500, sse=1478961.6, rms=4.676 (11.083%)
- 049: dt: 0.2500, sse=1429226.8, rms=4.496 (3.849%)
- rms = 4.50, time step reduction 2 of 3 to 0.125...
- 050: dt: 0.1250, sse=1415098.5, rms=4.440 (1.256%)
- 051: dt: 0.1250, sse=1396997.9, rms=4.364 (1.695%)
- rms = 4.35, time step reduction 3 of 3 to 0.062...
- 052: dt: 0.1250, sse=1394882.5, rms=4.354 (0.242%)
- positioning took 3.3 minutes
- mean border=51.5, 2547 (11) missing vertices, mean dist 0.2 [0.2 (%41.7)->0.5 (%58.3))]
- %34 local maxima, %32 large gradients and %28 min vals, 109 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1833034.0, rms=5.111
- 053: dt: 0.5000, sse=1726543.5, rms=4.765 (6.775%)
- 054: dt: 0.5000, sse=1685867.0, rms=4.654 (2.314%)
- rms = 4.70, time step reduction 1 of 3 to 0.250...
- 055: dt: 0.2500, sse=1507769.8, rms=3.914 (15.897%)
- 056: dt: 0.2500, sse=1454171.5, rms=3.658 (6.549%)
- rms = 3.61, time step reduction 2 of 3 to 0.125...
- 057: dt: 0.2500, sse=1444888.8, rms=3.612 (1.261%)
- 058: dt: 0.1250, sse=1401131.1, rms=3.390 (6.140%)
- rms = 3.34, time step reduction 3 of 3 to 0.062...
- 059: dt: 0.1250, sse=1391722.9, rms=3.344 (1.357%)
- positioning took 1.3 minutes
- mean border=50.4, 2646 (9) missing vertices, mean dist 0.1 [0.2 (%42.3)->0.4 (%57.7))]
- %47 local maxima, %20 large gradients and %27 min vals, 114 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1502198.5, rms=3.850
- rms = 4.31, time step reduction 1 of 3 to 0.250...
- 060: dt: 0.2500, sse=1434841.8, rms=3.539 (8.069%)
- 061: dt: 0.2500, sse=1410387.5, rms=3.424 (3.264%)
- rms = 3.41, time step reduction 2 of 3 to 0.125...
- 062: dt: 0.2500, sse=1405828.9, rms=3.410 (0.398%)
- 063: dt: 0.1250, sse=1378854.1, rms=3.268 (4.154%)
- rms = 3.23, time step reduction 3 of 3 to 0.062...
- 064: dt: 0.1250, sse=1371810.2, rms=3.235 (1.032%)
- positioning took 1.0 minutes
- mean border=49.7, 4761 (9) missing vertices, mean dist 0.0 [0.2 (%46.5)->0.3 (%53.5))]
- %50 local maxima, %17 large gradients and %26 min vals, 114 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- writing smoothed curvature to rh.curv.pial
- 000: dt: 0.0000, sse=1395176.4, rms=3.344
- rms = 3.84, time step reduction 1 of 3 to 0.250...
- 065: dt: 0.2500, sse=1372053.2, rms=3.223 (3.619%)
- rms = 3.18, time step reduction 2 of 3 to 0.125...
- 066: dt: 0.2500, sse=1360313.9, rms=3.179 (1.387%)
- 067: dt: 0.1250, sse=1347993.2, rms=3.107 (2.241%)
- rms = 3.08, time step reduction 3 of 3 to 0.062...
- 068: dt: 0.1250, sse=1341268.8, rms=3.077 (0.989%)
- positioning took 0.9 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.curv.pial
- writing smoothed area to rh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.area.pial
- vertex spacing 1.00 +- 0.45 (0.04-->9.38) (max @ vno 117463 --> 117471)
- face area 0.40 +- 0.32 (0.00-->6.72)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 158014 vertices processed
- 25000 of 158014 vertices processed
- 50000 of 158014 vertices processed
- 75000 of 158014 vertices processed
- 100000 of 158014 vertices processed
- 125000 of 158014 vertices processed
- 150000 of 158014 vertices processed
- 0 of 158014 vertices processed
- 25000 of 158014 vertices processed
- 50000 of 158014 vertices processed
- 75000 of 158014 vertices processed
- 100000 of 158014 vertices processed
- 125000 of 158014 vertices processed
- 150000 of 158014 vertices processed
- thickness calculation complete, 419:1503 truncations.
- 32401 vertices at 0 distance
- 102811 vertices at 1 distance
- 98563 vertices at 2 distance
- 45760 vertices at 3 distance
- 15594 vertices at 4 distance
- 4764 vertices at 5 distance
- 1686 vertices at 6 distance
- 632 vertices at 7 distance
- 267 vertices at 8 distance
- 111 vertices at 9 distance
- 53 vertices at 10 distance
- 35 vertices at 11 distance
- 18 vertices at 12 distance
- 17 vertices at 13 distance
- 12 vertices at 14 distance
- 14 vertices at 15 distance
- 20 vertices at 16 distance
- 16 vertices at 17 distance
- 9 vertices at 18 distance
- 16 vertices at 19 distance
- 7 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.thickness
- positioning took 17.9 minutes
- PIDs (14842 14845) completed and logs appended.
- #--------------------------------------------
- #@# Surf Volume lh Sun Oct 8 01:56:41 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- mris_calc -o lh.area.mid lh.area add lh.area.pial
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o lh.area.mid lh.area.mid div 2
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0051366 lh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- #@# 0051366 lh 294375
-
- vertexvol Done
- #--------------------------------------------
- #@# Surf Volume rh Sun Oct 8 01:56:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf
- mris_calc -o rh.area.mid rh.area add rh.area.pial
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o rh.area.mid rh.area.mid div 2
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0051366 rh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- #@# 0051366 rh 295414
-
- vertexvol Done
- #--------------------------------------------
- #@# Cortical ribbon mask Sun Oct 8 01:56:49 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon 0051366
- SUBJECTS_DIR is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- loading input data...
- computing distance to left white surface
- computing distance to left pial surface
- computing distance to right white surface
- computing distance to right pial surface
- hemi masks overlap voxels = 287
- writing volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/ribbon.mgz
- mris_volmask took 22.26 minutes
- writing ribbon files
- #-----------------------------------------
- #@# Parcellation Stats lh Sun Oct 8 02:19:05 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051366 lh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051366 lh pial
- #-----------------------------------------
- #@# Parcellation Stats rh Sun Oct 8 02:19:05 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051366 rh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051366 rh pial
- Waiting for PID 18681 of (18681 18684 18687 18690) to complete...
- Waiting for PID 18684 of (18681 18684 18687 18690) to complete...
- Waiting for PID 18687 of (18681 18684 18687 18690) to complete...
- Waiting for PID 18690 of (18681 18684 18687 18690) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051366 lh white
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1679 1166 3041 2.642 0.394 0.108 0.025 18 1.4 bankssts
- 865 538 1553 2.836 0.684 0.130 0.020 14 0.7 caudalanteriorcingulate
- 3132 2086 5782 2.584 0.499 0.126 0.030 38 3.8 caudalmiddlefrontal
- 3536 2139 5167 2.182 0.480 0.141 0.040 53 5.5 cuneus
- 597 431 2317 3.674 0.799 0.126 0.042 8 1.1 entorhinal
- 6152 4035 13371 2.933 0.601 0.123 0.030 83 7.5 fusiform
- 8196 5551 16621 2.625 0.510 0.122 0.029 116 9.3 inferiorparietal
- 6220 4242 15917 2.912 0.659 0.133 0.042 113 10.1 inferiortemporal
- 1896 1232 3292 2.431 0.876 0.132 0.038 32 2.6 isthmuscingulate
- 9322 5744 15261 2.330 0.546 0.126 0.030 122 10.4 lateraloccipital
- 4430 2967 8942 2.748 0.629 0.122 0.032 60 5.5 lateralorbitofrontal
- 6277 4104 9115 2.125 0.689 0.143 0.042 96 10.1 lingual
- 3216 2056 5776 2.548 0.720 0.116 0.039 48 5.3 medialorbitofrontal
- 5134 3467 13924 3.064 0.680 0.136 0.038 90 8.2 middletemporal
- 1112 732 2352 2.916 0.546 0.093 0.022 7 0.8 parahippocampal
- 2218 1438 3980 2.550 0.443 0.112 0.029 22 2.4 paracentral
- 2258 1519 5094 2.855 0.509 0.115 0.029 29 2.3 parsopercularis
- 1018 701 2815 2.831 0.689 0.134 0.033 18 1.2 parsorbitalis
- 2106 1410 4654 2.782 0.607 0.135 0.034 33 3.0 parstriangularis
- 3395 2220 3688 1.900 0.522 0.133 0.035 36 5.1 pericalcarine
- 6363 4106 9595 2.061 0.609 0.116 0.031 77 7.7 postcentral
- 1661 1082 3082 2.515 0.767 0.128 0.027 25 1.7 posteriorcingulate
- 9536 6102 18454 2.727 0.581 0.119 0.034 107 13.3 precentral
- 6292 4333 12092 2.609 0.525 0.124 0.030 72 7.3 precuneus
- 1247 790 2702 3.121 0.701 0.107 0.023 17 1.1 rostralanteriorcingulate
- 9294 6357 19665 2.546 0.598 0.137 0.037 170 14.4 rostralmiddlefrontal
- 11547 7819 26161 2.849 0.606 0.126 0.032 154 14.4 superiorfrontal
- 10051 6604 16886 2.311 0.448 0.121 0.029 134 10.7 superiorparietal
- 6451 4425 14871 2.898 0.647 0.113 0.028 82 7.6 superiortemporal
- 6629 4546 14447 2.693 0.599 0.133 0.034 100 9.4 supramarginal
- 348 239 899 2.607 0.580 0.150 0.048 9 0.6 frontalpole
- 731 499 2460 3.477 0.643 0.148 0.057 18 1.7 temporalpole
- 686 424 1327 2.801 0.450 0.119 0.048 9 1.0 transversetemporal
- 3934 2705 9062 3.195 0.872 0.121 0.038 47 6.4 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051366 lh pial
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1679 1159 3041 2.642 0.394 0.133 0.036 25 2.7 bankssts
- 865 661 1553 2.836 0.684 0.149 0.045 45 1.3 caudalanteriorcingulate
- 3132 2325 5782 2.584 0.499 0.139 0.036 48 4.5 caudalmiddlefrontal
- 3536 2611 5167 2.182 0.480 0.133 0.034 46 5.2 cuneus
- 597 819 2317 3.674 0.799 0.188 0.041 6 1.1 entorhinal
- 6152 5065 13371 2.933 0.601 0.155 0.042 96 11.7 fusiform
- 8196 6943 16621 2.625 0.510 0.145 0.032 102 11.6 inferiorparietal
- 6220 6368 15917 2.912 0.659 0.187 0.048 110 14.1 inferiortemporal
- 1896 1470 3292 2.431 0.876 0.143 0.041 45 3.4 isthmuscingulate
- 9322 7270 15261 2.330 0.546 0.132 0.029 118 12.0 lateraloccipital
- 4430 3397 8942 2.748 0.629 0.137 0.034 68 6.2 lateralorbitofrontal
- 6277 4653 9115 2.125 0.689 0.138 0.038 102 10.6 lingual
- 3216 2473 5776 2.548 0.720 0.148 0.041 60 5.7 medialorbitofrontal
- 5134 5164 13924 3.064 0.680 0.173 0.043 102 9.9 middletemporal
- 1112 945 2352 2.916 0.546 0.138 0.032 11 1.7 parahippocampal
- 2218 1658 3980 2.550 0.443 0.127 0.031 29 2.8 paracentral
- 2258 1927 5094 2.855 0.509 0.141 0.031 24 3.0 parsopercularis
- 1018 1204 2815 2.831 0.689 0.190 0.037 13 1.5 parsorbitalis
- 2106 1868 4654 2.782 0.607 0.159 0.042 27 3.7 parstriangularis
- 3395 1792 3688 1.900 0.522 0.107 0.028 56 3.9 pericalcarine
- 6363 5035 9595 2.061 0.609 0.129 0.026 61 7.1 postcentral
- 1661 1313 3082 2.515 0.767 0.161 0.042 42 3.1 posteriorcingulate
- 9536 7136 18454 2.727 0.581 0.122 0.029 111 11.8 precentral
- 6292 4893 12092 2.609 0.525 0.137 0.033 96 8.8 precuneus
- 1247 1014 2702 3.121 0.701 0.155 0.041 22 2.0 rostralanteriorcingulate
- 9294 8697 19665 2.546 0.598 0.173 0.041 146 17.6 rostralmiddlefrontal
- 11547 10018 26161 2.849 0.606 0.151 0.036 151 18.0 superiorfrontal
- 10051 7839 16886 2.311 0.448 0.134 0.028 118 11.8 superiorparietal
- 6451 5582 14871 2.898 0.647 0.154 0.037 104 11.2 superiortemporal
- 6629 5928 14447 2.693 0.599 0.158 0.037 92 10.7 supramarginal
- 348 400 899 2.607 0.580 0.197 0.035 5 0.5 frontalpole
- 731 926 2460 3.477 0.643 0.214 0.054 16 1.8 temporalpole
- 686 548 1327 2.801 0.450 0.122 0.030 4 0.9 transversetemporal
- 3934 2716 9062 3.195 0.872 0.142 0.037 69 6.4 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051366 rh white
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1634 1067 3113 2.967 0.383 0.109 0.024 13 1.5 bankssts
- 1468 896 2904 3.079 0.607 0.123 0.028 26 1.5 caudalanteriorcingulate
- 2712 1774 5046 2.579 0.500 0.112 0.027 27 2.9 caudalmiddlefrontal
- 3411 1999 4910 2.148 0.555 0.136 0.043 51 5.7 cuneus
- 578 385 2498 4.026 0.625 0.146 0.047 9 1.2 entorhinal
- 5584 3561 11959 2.963 0.670 0.123 0.035 75 7.6 fusiform
- 9802 6444 20851 2.771 0.500 0.122 0.028 130 10.9 inferiorparietal
- 6606 4322 15801 3.030 0.621 0.121 0.036 100 9.1 inferiortemporal
- 1720 1057 2972 2.572 0.882 0.132 0.054 33 3.3 isthmuscingulate
- 10635 6393 17117 2.384 0.587 0.130 0.036 146 14.8 lateraloccipital
- 5199 3416 10003 2.597 0.845 0.130 0.208 1644 56.2 lateralorbitofrontal
- 6787 4466 10258 2.172 0.714 0.156 0.051 120 14.4 lingual
- 3420 2302 6926 2.552 0.629 0.125 0.037 71 5.7 medialorbitofrontal
- 6598 4353 17072 3.256 0.667 0.123 0.038 97 10.7 middletemporal
- 1227 765 2685 3.028 0.719 0.096 0.030 10 1.2 parahippocampal
- 2376 1504 4079 2.423 0.538 0.116 0.030 25 2.7 paracentral
- 2277 1574 5002 2.722 0.448 0.120 0.034 36 2.9 parsopercularis
- 1406 957 3797 3.022 0.646 0.128 0.033 21 1.7 parsorbitalis
- 2664 1844 5782 2.635 0.528 0.131 0.033 42 3.5 parstriangularis
- 3115 2155 3341 1.797 0.538 0.152 0.044 48 6.4 pericalcarine
- 6422 3898 9189 2.126 0.652 0.104 0.030 67 7.5 postcentral
- 2050 1343 3817 2.594 0.778 0.143 0.031 39 2.4 posteriorcingulate
- 7451 4481 12893 2.622 0.573 0.111 0.037 85 11.6 precentral
- 6218 4130 11601 2.554 0.572 0.125 0.032 93 7.2 precuneus
- 1073 731 2640 3.107 0.480 0.128 0.030 17 1.4 rostralanteriorcingulate
- 10249 6962 20569 2.498 0.554 0.132 0.034 173 14.0 rostralmiddlefrontal
- 10320 6988 23511 2.843 0.591 0.129 0.034 142 13.9 superiorfrontal
- 9214 5944 15224 2.351 0.416 0.113 0.026 115 9.1 superiorparietal
- 5950 3914 13863 3.109 0.601 0.105 0.026 56 6.1 superiortemporal
- 5411 3585 11507 2.842 0.543 0.123 0.030 66 6.5 supramarginal
- 583 373 1613 3.177 0.517 0.159 0.055 17 1.5 frontalpole
- 616 422 2542 4.010 0.640 0.146 0.058 12 1.4 temporalpole
- 695 322 1122 2.731 0.479 0.097 0.055 10 1.3 transversetemporal
- 4033 2716 9157 3.279 0.733 0.126 0.043 49 7.1 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051366 rh pial
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1634 996 3113 2.967 0.383 0.128 0.038 28 2.4 bankssts
- 1468 1095 2904 3.079 0.607 0.135 0.036 30 2.0 caudalanteriorcingulate
- 2712 2071 5046 2.579 0.500 0.134 0.032 38 3.7 caudalmiddlefrontal
- 3411 2580 4910 2.148 0.555 0.131 0.035 51 5.1 cuneus
- 578 816 2498 4.026 0.625 0.192 0.039 6 1.0 entorhinal
- 5584 4382 11959 2.963 0.670 0.145 0.038 106 9.1 fusiform
- 9802 8188 20851 2.771 0.500 0.143 0.031 120 14.0 inferiorparietal
- 6606 5813 15801 3.030 0.621 0.155 0.041 118 11.4 inferiortemporal
- 1720 1183 2972 2.572 0.882 0.134 0.043 39 2.5 isthmuscingulate
- 10635 7770 17117 2.384 0.587 0.127 0.031 148 14.5 lateraloccipital
- 5199 4209 10003 2.597 0.845 0.162 0.058 122 9.9 lateralorbitofrontal
- 6787 5015 10258 2.172 0.714 0.140 0.042 115 12.0 lingual
- 3420 3046 6926 2.552 0.629 0.165 0.042 56 6.5 medialorbitofrontal
- 6598 6068 17072 3.256 0.667 0.152 0.036 90 10.2 middletemporal
- 1227 998 2685 3.028 0.719 0.131 0.029 12 1.7 parahippocampal
- 2376 1761 4079 2.423 0.538 0.131 0.036 57 3.9 paracentral
- 2277 2103 5002 2.722 0.448 0.152 0.032 25 3.3 parsopercularis
- 1406 1489 3797 3.022 0.646 0.169 0.032 18 2.2 parsorbitalis
- 2664 2457 5782 2.635 0.528 0.168 0.038 38 4.5 parstriangularis
- 3115 1692 3341 1.797 0.538 0.109 0.043 88 6.0 pericalcarine
- 6422 4765 9189 2.126 0.652 0.113 0.024 47 6.5 postcentral
- 2050 1591 3817 2.594 0.778 0.173 0.049 81 5.0 posteriorcingulate
- 7451 5083 12893 2.622 0.573 0.109 0.025 79 8.2 precentral
- 6218 4827 11601 2.554 0.572 0.141 0.034 82 8.9 precuneus
- 1073 1007 2640 3.107 0.480 0.147 0.033 10 1.5 rostralanteriorcingulate
- 10249 9139 20569 2.498 0.554 0.166 0.039 166 18.1 rostralmiddlefrontal
- 10320 8987 23511 2.843 0.591 0.157 0.040 158 17.6 superiorfrontal
- 9214 6884 15224 2.351 0.416 0.122 0.025 104 9.5 superiorparietal
- 5950 4882 13863 3.109 0.601 0.135 0.032 80 8.8 superiortemporal
- 5411 4371 11507 2.842 0.543 0.139 0.032 65 7.6 supramarginal
- 583 650 1613 3.177 0.517 0.212 0.045 8 1.4 frontalpole
- 616 775 2542 4.010 0.640 0.222 0.052 16 1.4 temporalpole
- 695 462 1122 2.731 0.479 0.096 0.026 4 0.9 transversetemporal
- 4033 2654 9157 3.279 0.733 0.141 0.049 114 7.8 insula
- PIDs (18681 18684 18687 18690) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 2 lh Sun Oct 8 02:20:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- #-----------------------------------------
- #@# Cortical Parc 2 rh Sun Oct 8 02:20:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- Waiting for PID 18805 of (18805 18808) to complete...
- Waiting for PID 18808 of (18805 18808) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 2.9 using min determinant for regularization = 0.086
- 0 singular and 762 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 68 labels changed using aseg
- relabeling using gibbs priors...
- 000: 10560 changed, 156857 examined...
- 001: 2519 changed, 40574 examined...
- 002: 712 changed, 12986 examined...
- 003: 312 changed, 4091 examined...
- 004: 140 changed, 1789 examined...
- 005: 74 changed, 851 examined...
- 006: 43 changed, 419 examined...
- 007: 19 changed, 250 examined...
- 008: 9 changed, 103 examined...
- 009: 4 changed, 51 examined...
- 010: 4 changed, 21 examined...
- 011: 2 changed, 20 examined...
- 012: 0 changed, 10 examined...
- 26 labels changed using aseg
- 000: 312 total segments, 224 labels (3363 vertices) changed
- 001: 106 total segments, 19 labels (80 vertices) changed
- 002: 88 total segments, 1 labels (4 vertices) changed
- 003: 87 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 53 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1135 vertices marked for relabeling...
- 1135 labels changed in reclassification.
- writing output to ../label/lh.aparc.a2009s.annot...
- classification took 0 minutes and 22 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 719 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 19 labels changed using aseg
- relabeling using gibbs priors...
- 000: 10364 changed, 158014 examined...
- 001: 2506 changed, 40678 examined...
- 002: 806 changed, 13158 examined...
- 003: 322 changed, 4502 examined...
- 004: 170 changed, 1819 examined...
- 005: 80 changed, 980 examined...
- 006: 22 changed, 401 examined...
- 007: 19 changed, 153 examined...
- 008: 4 changed, 114 examined...
- 009: 2 changed, 22 examined...
- 010: 3 changed, 11 examined...
- 011: 0 changed, 13 examined...
- 6 labels changed using aseg
- 000: 316 total segments, 232 labels (3668 vertices) changed
- 001: 100 total segments, 16 labels (43 vertices) changed
- 002: 84 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 45 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1751 vertices marked for relabeling...
- 1751 labels changed in reclassification.
- writing output to ../label/rh.aparc.a2009s.annot...
- classification took 0 minutes and 22 seconds.
- PIDs (18805 18808) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 2 lh Sun Oct 8 02:21:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051366 lh white
- #-----------------------------------------
- #@# Parcellation Stats 2 rh Sun Oct 8 02:21:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051366 rh white
- Waiting for PID 18855 of (18855 18858) to complete...
- Waiting for PID 18858 of (18855 18858) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051366 lh white
- computing statistics for each annotation in ../label/lh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1381 964 2749 2.444 0.602 0.141 0.037 28 2.2 G&S_frontomargin
- 1683 1120 3592 2.643 0.547 0.128 0.027 23 1.7 G&S_occipital_inf
- 1998 1182 3413 2.389 0.439 0.121 0.037 26 2.7 G&S_paracentral
- 1831 1261 3965 2.747 0.557 0.129 0.032 24 2.3 G&S_subcentral
- 792 562 2022 2.631 0.557 0.146 0.046 18 1.7 G&S_transv_frontopol
- 2450 1615 5138 2.986 0.571 0.118 0.027 30 2.5 G&S_cingul-Ant
- 1099 759 1992 2.540 0.472 0.110 0.016 8 0.8 G&S_cingul-Mid-Ant
- 1272 855 2324 2.658 0.438 0.112 0.023 11 1.1 G&S_cingul-Mid-Post
- 719 484 2102 3.041 0.505 0.147 0.041 14 1.1 G_cingul-Post-dorsal
- 515 314 1037 2.770 0.855 0.141 0.055 11 1.1 G_cingul-Post-ventral
- 3345 2025 4918 2.077 0.547 0.149 0.043 55 5.9 G_cuneus
- 1483 1019 4456 3.234 0.431 0.138 0.039 30 2.0 G_front_inf-Opercular
- 557 380 1658 3.004 0.520 0.133 0.040 13 0.9 G_front_inf-Orbital
- 1156 757 3195 3.109 0.487 0.153 0.041 25 2.0 G_front_inf-Triangul
- 4751 3171 12422 2.796 0.588 0.149 0.043 110 8.3 G_front_middle
- 8025 5302 20100 2.975 0.590 0.135 0.038 135 11.5 G_front_sup
- 729 537 2039 3.560 0.844 0.147 0.057 13 1.6 G_Ins_lg&S_cent_ins
- 987 626 3245 3.483 0.999 0.140 0.057 22 2.7 G_insular_short
- 2738 1761 6342 2.653 0.596 0.142 0.035 62 3.6 G_occipital_middle
- 2204 1384 3813 2.371 0.496 0.132 0.032 33 2.3 G_occipital_sup
- 2728 1739 7323 3.237 0.629 0.131 0.034 46 3.6 G_oc-temp_lat-fusifor
- 4455 2796 6422 1.985 0.720 0.152 0.048 81 8.0 G_oc-temp_med-Lingual
- 1159 763 3471 3.340 0.762 0.100 0.031 10 1.2 G_oc-temp_med-Parahip
- 2743 1854 6931 2.732 0.708 0.134 0.039 53 3.9 G_orbital
- 2993 2053 8157 2.873 0.551 0.142 0.040 58 4.3 G_pariet_inf-Angular
- 3207 2230 7759 2.729 0.634 0.138 0.038 62 5.0 G_pariet_inf-Supramar
- 3625 2402 7286 2.404 0.507 0.137 0.035 68 4.4 G_parietal_sup
- 2294 1384 3510 2.019 0.568 0.121 0.038 41 3.3 G_postcentral
- 3522 2161 8400 2.933 0.539 0.123 0.043 49 5.9 G_precentral
- 3070 2039 7324 2.727 0.490 0.131 0.035 51 3.9 G_precuneus
- 993 642 2261 2.547 0.551 0.130 0.053 22 2.5 G_rectus
- 976 559 1555 2.454 1.098 0.099 0.054 14 1.8 G_subcallosal
- 568 356 1243 2.796 0.418 0.127 0.056 10 1.0 G_temp_sup-G_T_transv
- 2064 1429 6632 3.142 0.654 0.145 0.043 49 3.8 G_temp_sup-Lateral
- 806 597 2588 3.480 0.803 0.091 0.022 5 0.6 G_temp_sup-Plan_polar
- 1371 905 2902 2.844 0.508 0.112 0.027 14 1.5 G_temp_sup-Plan_tempo
- 3661 2443 10798 3.044 0.672 0.149 0.054 92 7.6 G_temporal_inf
- 2912 1952 9360 3.221 0.688 0.139 0.042 62 4.7 G_temporal_middle
- 336 236 544 2.264 0.504 0.103 0.016 2 0.2 Lat_Fis-ant-Horizont
- 327 231 531 2.646 0.486 0.107 0.025 2 0.3 Lat_Fis-ant-Vertical
- 1202 794 1682 2.711 0.535 0.115 0.025 9 1.3 Lat_Fis-post
- 2866 1583 3773 2.037 0.483 0.115 0.034 35 3.6 Pole_occipital
- 1726 1197 5800 3.244 0.782 0.169 0.067 50 4.9 Pole_temporal
- 4051 2848 5011 2.135 0.632 0.140 0.036 45 6.5 S_calcarine
- 3587 2390 4328 2.041 0.564 0.109 0.026 26 4.1 S_central
- 1157 760 1632 2.381 0.461 0.088 0.015 4 0.8 S_cingul-Marginalis
- 642 417 975 2.751 0.610 0.084 0.016 2 0.5 S_circular_insula_ant
- 1557 1091 2632 2.854 0.724 0.089 0.016 5 1.2 S_circular_insula_inf
- 1974 1310 2861 2.673 0.478 0.102 0.021 10 1.8 S_circular_insula_sup
- 1004 679 1998 2.929 0.537 0.108 0.022 7 1.0 S_collat_transv_ant
- 689 441 979 2.336 0.480 0.139 0.039 8 0.9 S_collat_transv_post
- 2258 1513 3475 2.417 0.460 0.120 0.026 21 2.3 S_front_inf
- 1707 1190 2501 2.226 0.436 0.121 0.027 20 2.0 S_front_middle
- 2998 2086 5231 2.471 0.508 0.111 0.023 21 2.9 S_front_sup
- 488 337 680 2.366 0.432 0.122 0.023 3 0.6 S_interm_prim-Jensen
- 3651 2442 5127 2.318 0.384 0.101 0.020 27 2.9 S_intrapariet&P_trans
- 1072 725 1336 2.175 0.277 0.116 0.024 9 1.0 S_oc_middle&Lunatus
- 2026 1346 2697 2.250 0.340 0.119 0.025 17 2.1 S_oc_sup&transversal
- 1069 724 1647 2.463 0.340 0.104 0.021 7 0.9 S_occipital_ant
- 1671 1135 2752 2.625 0.436 0.115 0.024 16 1.5 S_oc-temp_lat
- 2837 1967 4418 2.614 0.379 0.104 0.020 16 2.4 S_oc-temp_med&Lingual
- 277 181 354 2.084 0.381 0.094 0.015 1 0.2 S_orbital_lateral
- 774 554 1095 2.633 0.530 0.110 0.017 5 0.5 S_orbital_med-olfact
- 1612 1085 3200 2.881 0.587 0.120 0.028 19 1.8 S_orbital-H_Shaped
- 2434 1606 3570 2.428 0.462 0.106 0.022 19 2.2 S_parieto_occipital
- 1324 806 1189 1.984 1.055 0.134 0.024 30 1.0 S_pericallosal
- 2988 1981 4574 2.230 0.506 0.113 0.028 29 3.3 S_postcentral
- 1698 1133 2791 2.690 0.430 0.107 0.023 13 1.5 S_precentral-inf-part
- 2042 1342 2843 2.493 0.452 0.116 0.026 15 2.3 S_precentral-sup-part
- 636 441 1075 2.747 0.600 0.123 0.020 6 0.6 S_suborbital
- 1193 809 1664 2.438 0.396 0.115 0.027 9 1.2 S_subparietal
- 1864 1272 3178 2.616 0.459 0.113 0.023 14 1.9 S_temporal_inf
- 6519 4478 11126 2.617 0.454 0.106 0.023 57 5.8 S_temporal_sup
- 411 290 663 2.815 0.453 0.119 0.022 3 0.4 S_temporal_transverse
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051366 rh white
- computing statistics for each annotation in ../label/rh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1214 821 2322 2.551 0.657 0.136 0.036 18 1.9 G&S_frontomargin
- 1992 1233 3569 2.588 0.577 0.131 0.034 27 2.4 G&S_occipital_inf
- 1836 1036 2909 2.302 0.478 0.124 0.041 28 2.7 G&S_paracentral
- 1396 920 3022 2.866 0.644 0.125 0.034 16 1.7 G&S_subcentral
- 1745 1140 4089 2.635 0.604 0.145 0.050 51 3.8 G&S_transv_frontopol
- 3298 2214 7075 2.853 0.552 0.124 0.029 51 4.1 G&S_cingul-Ant
- 1359 868 2513 2.665 0.488 0.109 0.023 15 1.2 G&S_cingul-Mid-Ant
- 1591 1042 2916 2.695 0.532 0.129 0.028 20 1.8 G&S_cingul-Mid-Post
- 618 399 1712 3.093 0.601 0.147 0.042 15 0.8 G_cingul-Post-dorsal
- 468 262 956 2.681 0.934 0.142 0.089 13 1.7 G_cingul-Post-ventral
- 3296 1936 4799 2.121 0.590 0.139 0.045 49 5.9 G_cuneus
- 1843 1254 4582 2.908 0.547 0.125 0.037 33 2.5 G_front_inf-Opercular
- 656 434 1777 2.868 0.530 0.144 0.041 13 1.0 G_front_inf-Orbital
- 981 693 2522 2.735 0.483 0.145 0.044 22 1.6 G_front_inf-Triangul
- 4216 2799 10911 2.768 0.534 0.147 0.043 97 6.7 G_front_middle
- 7028 4707 18359 2.989 0.590 0.140 0.040 124 10.9 G_front_sup
- 709 516 2178 3.692 0.652 0.133 0.048 10 1.0 G_Ins_lg&S_cent_ins
- 1357 891 3603 3.341 0.958 0.154 0.061 31 3.1 G_insular_short
- 3132 1940 7126 2.776 0.484 0.141 0.039 66 4.4 G_occipital_middle
- 2318 1380 3731 2.325 0.498 0.128 0.036 47 3.1 G_occipital_sup
- 2709 1610 7312 3.196 0.761 0.134 0.044 53 4.4 G_oc-temp_lat-fusifor
- 4399 2761 6790 2.098 0.718 0.159 0.057 91 10.1 G_oc-temp_med-Lingual
- 1317 807 4155 3.441 0.909 0.128 0.050 19 2.5 G_oc-temp_med-Parahip
- 2814 1888 8058 2.984 0.707 0.143 0.044 64 5.0 G_orbital
- 3547 2227 9013 2.927 0.534 0.136 0.035 67 4.8 G_pariet_inf-Angular
- 2842 1831 7070 2.961 0.520 0.138 0.039 48 4.3 G_pariet_inf-Supramar
- 2849 1791 6093 2.549 0.413 0.122 0.028 50 2.9 G_parietal_sup
- 2389 1241 3502 2.143 0.602 0.108 0.039 38 3.6 G_postcentral
- 2722 1455 5435 2.727 0.482 0.111 0.044 43 4.9 G_precentral
- 2698 1734 6128 2.704 0.572 0.132 0.036 53 3.2 G_precuneus
- 1049 670 2638 2.651 0.701 0.143 0.067 32 3.4 G_rectus
- 871 527 1128 1.908 1.194 0.121 1.059 1573 49.6 G_subcallosal
- 561 258 1025 2.736 0.513 0.116 0.069 11 1.3 G_temp_sup-G_T_transv
- 2068 1301 6109 3.366 0.602 0.125 0.036 34 2.7 G_temp_sup-Lateral
- 706 486 2059 3.575 0.614 0.098 0.025 5 0.7 G_temp_sup-Plan_polar
- 918 646 1895 2.767 0.335 0.091 0.016 6 0.6 G_temp_sup-Plan_tempo
- 3823 2413 10507 3.100 0.718 0.135 0.045 84 6.8 G_temporal_inf
- 3837 2459 12071 3.492 0.678 0.131 0.048 74 7.7 G_temporal_middle
- 553 397 957 2.419 0.579 0.110 0.018 5 0.5 Lat_Fis-ant-Horizont
- 147 101 271 2.614 0.299 0.078 0.014 1 0.1 Lat_Fis-ant-Vertical
- 1573 1008 2222 2.754 0.528 0.109 0.034 13 2.5 Lat_Fis-post
- 4848 2769 5955 1.933 0.620 0.134 0.042 68 8.3 Pole_occipital
- 1930 1277 6650 3.571 0.689 0.146 0.054 38 3.9 Pole_temporal
- 3236 2458 4249 2.130 0.702 0.161 0.044 50 6.6 S_calcarine
- 3406 2216 3768 1.989 0.552 0.101 0.029 22 4.6 S_central
- 1362 930 2137 2.369 0.495 0.112 0.025 12 1.3 S_cingul-Marginalis
- 690 448 1098 2.880 0.382 0.101 0.022 4 0.7 S_circular_insula_ant
- 1509 975 2252 2.854 0.567 0.085 0.018 6 1.3 S_circular_insula_inf
- 1430 957 2221 2.873 0.437 0.100 0.022 6 1.4 S_circular_insula_sup
- 991 650 1960 2.932 0.522 0.113 0.036 10 1.3 S_collat_transv_ant
- 555 361 792 2.253 0.473 0.118 0.033 4 0.7 S_collat_transv_post
- 2565 1760 4128 2.372 0.495 0.119 0.024 23 2.6 S_front_inf
- 2509 1729 3764 2.269 0.444 0.109 0.023 21 2.2 S_front_middle
- 2359 1617 3929 2.468 0.415 0.100 0.023 16 2.0 S_front_sup
- 477 352 1006 2.916 0.657 0.133 0.026 4 0.6 S_interm_prim-Jensen
- 3667 2516 5176 2.299 0.395 0.104 0.020 22 3.0 S_intrapariet&P_trans
- 1271 862 1622 2.295 0.308 0.114 0.024 8 1.3 S_oc_middle&Lunatus
- 1606 1022 2192 2.432 0.374 0.106 0.021 11 1.4 S_oc_sup&transversal
- 1020 678 1665 2.681 0.296 0.110 0.024 9 1.0 S_occipital_ant
- 1700 1152 2741 2.789 0.371 0.102 0.019 9 1.4 S_oc-temp_lat
- 2508 1749 3920 2.720 0.459 0.101 0.019 12 1.9 S_oc-temp_med&Lingual
- 760 524 1315 2.576 0.585 0.132 0.030 8 0.9 S_orbital_lateral
- 896 635 1398 2.338 0.660 0.108 0.018 6 0.7 S_orbital_med-olfact
- 1659 1116 3166 2.749 0.540 0.116 0.026 19 1.8 S_orbital-H_Shaped
- 2218 1471 2999 2.294 0.479 0.116 0.026 21 2.4 S_parieto_occipital
- 1787 1125 2094 2.499 1.017 0.135 0.036 38 2.0 S_pericallosal
- 2402 1616 3293 2.265 0.443 0.091 0.015 10 1.7 S_postcentral
- 1504 1039 2515 2.602 0.452 0.108 0.024 11 1.6 S_precentral-inf-part
- 1164 756 1613 2.408 0.412 0.105 0.024 8 1.1 S_precentral-sup-part
- 464 336 648 2.251 0.592 0.126 0.020 4 0.3 S_suborbital
- 1644 1111 2615 2.478 0.437 0.122 0.031 19 2.1 S_subparietal
- 1912 1298 2988 2.795 0.392 0.102 0.019 9 1.6 S_temporal_inf
- 7715 5227 13995 2.842 0.458 0.105 0.022 51 6.9 S_temporal_sup
- 320 221 441 2.601 0.371 0.125 0.022 2 0.4 S_temporal_transverse
- PIDs (18855 18858) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 3 lh Sun Oct 8 02:22:04 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- #-----------------------------------------
- #@# Cortical Parc 3 rh Sun Oct 8 02:22:04 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- Waiting for PID 18927 of (18927 18930) to complete...
- Waiting for PID 18930 of (18927 18930) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 383 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1422 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2186 changed, 156857 examined...
- 001: 522 changed, 10146 examined...
- 002: 146 changed, 2884 examined...
- 003: 64 changed, 846 examined...
- 004: 32 changed, 357 examined...
- 005: 24 changed, 182 examined...
- 006: 18 changed, 125 examined...
- 007: 15 changed, 89 examined...
- 008: 13 changed, 79 examined...
- 009: 5 changed, 71 examined...
- 010: 6 changed, 36 examined...
- 011: 4 changed, 34 examined...
- 012: 2 changed, 24 examined...
- 013: 1 changed, 13 examined...
- 014: 1 changed, 7 examined...
- 015: 1 changed, 7 examined...
- 016: 0 changed, 5 examined...
- 318 labels changed using aseg
- 000: 56 total segments, 23 labels (274 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 7 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 724 vertices marked for relabeling...
- 724 labels changed in reclassification.
- writing output to ../label/lh.aparc.DKTatlas.annot...
- classification took 0 minutes and 18 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051366 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.9 using min determinant for regularization = 0.009
- 0 singular and 325 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1373 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2223 changed, 158014 examined...
- 001: 510 changed, 10253 examined...
- 002: 142 changed, 2907 examined...
- 003: 62 changed, 814 examined...
- 004: 22 changed, 368 examined...
- 005: 11 changed, 126 examined...
- 006: 7 changed, 57 examined...
- 007: 5 changed, 45 examined...
- 008: 8 changed, 28 examined...
- 009: 6 changed, 36 examined...
- 010: 5 changed, 33 examined...
- 011: 6 changed, 32 examined...
- 012: 6 changed, 27 examined...
- 013: 6 changed, 28 examined...
- 014: 6 changed, 26 examined...
- 015: 5 changed, 33 examined...
- 016: 8 changed, 29 examined...
- 017: 4 changed, 31 examined...
- 018: 4 changed, 23 examined...
- 019: 3 changed, 16 examined...
- 020: 3 changed, 17 examined...
- 021: 1 changed, 23 examined...
- 022: 1 changed, 7 examined...
- 023: 0 changed, 7 examined...
- 271 labels changed using aseg
- 000: 59 total segments, 26 labels (400 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 6 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1202 vertices marked for relabeling...
- 1202 labels changed in reclassification.
- writing output to ../label/rh.aparc.DKTatlas.annot...
- classification took 0 minutes and 18 seconds.
- PIDs (18927 18930) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 3 lh Sun Oct 8 02:22:23 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051366 lh white
- #-----------------------------------------
- #@# Parcellation Stats 3 rh Sun Oct 8 02:22:23 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051366 rh white
- Waiting for PID 18978 of (18978 18981) to complete...
- Waiting for PID 18981 of (18978 18981) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051366 lh white
- computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1604 1034 2998 2.790 0.668 0.122 0.023 24 1.4 caudalanteriorcingulate
- 3447 2298 6328 2.590 0.507 0.127 0.030 42 4.1 caudalmiddlefrontal
- 4398 2710 6533 2.205 0.464 0.131 0.036 60 6.1 cuneus
- 518 376 2014 3.601 0.878 0.110 0.036 5 0.7 entorhinal
- 5767 3781 12649 2.954 0.603 0.121 0.029 74 6.4 fusiform
- 8198 5569 16880 2.635 0.518 0.124 0.030 119 9.4 inferiorparietal
- 6213 4243 15859 2.907 0.657 0.135 0.044 118 10.9 inferiortemporal
- 1924 1252 3360 2.466 0.861 0.130 0.037 32 2.7 isthmuscingulate
- 9396 5803 15358 2.322 0.536 0.127 0.031 125 10.6 lateraloccipital
- 4726 3200 10109 2.803 0.671 0.128 0.035 73 6.5 lateralorbitofrontal
- 6408 4198 9242 2.118 0.685 0.145 0.042 99 10.5 lingual
- 2517 1638 4775 2.513 0.706 0.115 0.043 41 4.6 medialorbitofrontal
- 7043 4776 17474 2.956 0.653 0.127 0.034 110 9.4 middletemporal
- 1172 765 2485 2.926 0.552 0.093 0.022 7 0.9 parahippocampal
- 2682 1731 4931 2.556 0.463 0.113 0.031 28 3.2 paracentral
- 2073 1393 4662 2.883 0.465 0.117 0.032 28 2.2 parsopercularis
- 1100 773 2498 2.596 0.644 0.115 0.025 12 1.2 parsorbitalis
- 2519 1672 5360 2.740 0.607 0.129 0.032 37 3.3 parstriangularis
- 3353 2221 3683 1.907 0.522 0.134 0.035 36 5.0 pericalcarine
- 7272 4711 10978 2.095 0.607 0.117 0.030 85 8.7 postcentral
- 1770 1154 3184 2.507 0.761 0.126 0.027 25 1.8 posteriorcingulate
- 9330 5969 18273 2.742 0.579 0.118 0.033 105 12.6 precentral
- 6171 4183 12064 2.605 0.537 0.126 0.031 76 7.3 precuneus
- 1986 1260 4086 2.990 0.762 0.117 0.026 28 1.9 rostralanteriorcingulate
- 6768 4556 14681 2.606 0.603 0.139 0.037 127 10.3 rostralmiddlefrontal
- 12516 8514 28131 2.780 0.622 0.129 0.034 181 16.9 superiorfrontal
- 8173 5404 13753 2.308 0.447 0.120 0.029 108 8.9 superiorparietal
- 8208 5638 19534 2.944 0.665 0.118 0.032 113 10.8 superiortemporal
- 6148 4210 13126 2.682 0.607 0.133 0.034 91 8.8 supramarginal
- 694 428 1337 2.810 0.449 0.119 0.047 9 1.0 transversetemporal
- 3435 2342 8028 3.183 0.862 0.118 0.035 40 5.4 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051366 rh white
- computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1584 967 3066 3.044 0.620 0.125 0.028 28 1.6 caudalanteriorcingulate
- 2806 1826 5231 2.584 0.499 0.113 0.027 29 3.0 caudalmiddlefrontal
- 3967 2373 5690 2.125 0.543 0.132 0.040 55 6.4 cuneus
- 502 341 2190 4.010 0.668 0.157 0.052 9 1.2 entorhinal
- 5114 3276 10955 2.964 0.676 0.121 0.034 67 6.7 fusiform
- 9687 6369 20611 2.771 0.502 0.122 0.028 129 10.9 inferiorparietal
- 7304 4723 17358 3.006 0.645 0.123 0.038 114 11.0 inferiortemporal
- 1670 1025 2881 2.598 0.862 0.133 0.055 33 3.2 isthmuscingulate
- 10800 6459 17072 2.365 0.580 0.131 0.038 163 15.4 lateraloccipital
- 5256 3493 10909 2.729 0.795 0.138 0.041 95 8.9 lateralorbitofrontal
- 6606 4348 10027 2.171 0.710 0.154 0.050 113 13.7 lingual
- 2832 1861 5588 2.407 0.832 0.129 0.359 1620 53.9 medialorbitofrontal
- 7836 5205 19497 3.228 0.617 0.118 0.034 100 11.0 middletemporal
- 1338 842 2915 3.015 0.714 0.100 0.032 14 1.5 parahippocampal
- 2445 1547 4328 2.460 0.549 0.116 0.029 25 2.6 paracentral
- 2591 1777 5533 2.718 0.444 0.118 0.033 39 3.2 parsopercularis
- 1100 755 2637 2.831 0.654 0.114 0.026 11 1.1 parsorbitalis
- 2914 2000 6459 2.670 0.548 0.136 0.034 46 4.1 parstriangularis
- 3092 2116 3309 1.801 0.540 0.152 0.045 49 6.3 pericalcarine
- 7061 4314 10185 2.132 0.636 0.105 0.030 75 8.2 postcentral
- 2111 1381 3851 2.569 0.787 0.142 0.031 39 2.6 posteriorcingulate
- 7284 4376 12696 2.635 0.576 0.111 0.037 84 11.5 precentral
- 6589 4372 12338 2.539 0.576 0.127 0.033 100 8.1 precuneus
- 1439 980 3133 2.979 0.545 0.120 0.029 21 1.8 rostralanteriorcingulate
- 7066 4821 14133 2.524 0.547 0.134 0.034 121 8.9 rostralmiddlefrontal
- 14090 9514 31476 2.764 0.609 0.128 0.034 216 19.6 superiorfrontal
- 7367 4798 12522 2.385 0.405 0.111 0.024 81 6.6 superiorparietal
- 7583 4982 18256 3.159 0.655 0.112 0.031 81 8.9 superiortemporal
- 5188 3430 10945 2.853 0.537 0.122 0.030 62 6.2 supramarginal
- 667 308 1066 2.726 0.479 0.099 0.056 10 1.3 transversetemporal
- 3640 2472 8556 3.269 0.691 0.120 0.038 40 5.7 insula
- PIDs (18978 18981) completed and logs appended.
- #-----------------------------------------
- #@# WM/GM Contrast lh Sun Oct 8 02:23:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- pctsurfcon --s 0051366 --lh-only
- #-----------------------------------------
- #@# WM/GM Contrast rh Sun Oct 8 02:23:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- pctsurfcon --s 0051366 --rh-only
- Waiting for PID 19047 of (19047 19057) to complete...
- Waiting for PID 19057 of (19047 19057) to complete...
- pctsurfcon --s 0051366 --lh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts/pctsurfcon.log
- Sun Oct 8 02:23:13 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-963 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19047/lh.wm.mgh --regheader 0051366 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 83462
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19047/lh.wm.mgh
- Dim: 156857 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19047/lh.gm.mgh --projfrac 0.3 --regheader 0051366 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 103280
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19047/lh.gm.mgh
- Dim: 156857 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19047/lh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19047/lh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.w-g.pct.mgh --annot 0051366 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/stats/lh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.w-g.pct.mgh --annot 0051366 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/stats/lh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 1000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.w-g.pct.mgh
- Vertex Area is 0.663675 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- pctsurfcon --s 0051366 --rh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts/pctsurfcon.log
- Sun Oct 8 02:23:13 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-963 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19057/rh.wm.mgh --regheader 0051366 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 82612
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19057/rh.wm.mgh
- Dim: 158014 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19057/rh.gm.mgh --projfrac 0.3 --regheader 0051366 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 102852
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19057/rh.gm.mgh
- Dim: 158014 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19057/rh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/tmp.pctsurfcon.19057/rh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.w-g.pct.mgh --annot 0051366 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/stats/rh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.w-g.pct.mgh --annot 0051366 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/stats/rh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 2000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.w-g.pct.mgh
- Vertex Area is 0.65053 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- PIDs (19047 19057) completed and logs appended.
- #-----------------------------------------
- #@# Relabel Hypointensities Sun Oct 8 02:23:20 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz
- reading input surface ../surf/lh.white...
- relabeling lh hypointensities...
- 1020 voxels changed to hypointensity...
- reading input surface ../surf/rh.white...
- relabeling rh hypointensities...
- 1062 voxels changed to hypointensity...
- 2097 hypointense voxels neighboring cortex changed
- #-----------------------------------------
- #@# AParc-to-ASeg aparc Sun Oct 8 02:23:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_aparc2aseg --s 0051366 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- #-----------------------------------------
- #@# AParc-to-ASeg a2009s Sun Oct 8 02:23:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_aparc2aseg --s 0051366 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- #-----------------------------------------
- #@# AParc-to-ASeg DKTatlas Sun Oct 8 02:23:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_aparc2aseg --s 0051366 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- Waiting for PID 19224 of (19224 19227 19230) to complete...
- Waiting for PID 19227 of (19224 19227 19230) to complete...
- Waiting for PID 19230 of (19224 19227 19230) to complete...
- mri_aparc2aseg --s 0051366 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051366
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aparc+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.39
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 107
- rescaling Left_Cerebral_Cortex from 61 --> 57
- rescaling Left_Lateral_Ventricle from 13 --> 18
- rescaling Left_Inf_Lat_Vent from 34 --> 33
- rescaling Left_Cerebellum_White_Matter from 86 --> 85
- rescaling Left_Cerebellum_Cortex from 60 --> 58
- rescaling Left_Thalamus from 94 --> 99
- rescaling Left_Thalamus_Proper from 84 --> 86
- rescaling Left_Caudate from 75 --> 69
- rescaling Left_Putamen from 80 --> 82
- rescaling Left_Pallidum from 98 --> 95
- rescaling Third_Ventricle from 25 --> 27
- rescaling Fourth_Ventricle from 22 --> 19
- rescaling Brain_Stem from 81 --> 82
- rescaling Left_Hippocampus from 57 --> 58
- rescaling Left_Amygdala from 56 --> 63
- rescaling CSF from 32 --> 38
- rescaling Left_Accumbens_area from 62 --> 62
- rescaling Left_VentralDC from 87 --> 90
- rescaling Right_Cerebral_White_Matter from 105 --> 106
- rescaling Right_Cerebral_Cortex from 58 --> 60
- rescaling Right_Lateral_Ventricle from 13 --> 14
- rescaling Right_Inf_Lat_Vent from 25 --> 26
- rescaling Right_Cerebellum_White_Matter from 87 --> 85
- rescaling Right_Cerebellum_Cortex from 59 --> 63
- rescaling Right_Thalamus_Proper from 85 --> 89
- rescaling Right_Caudate from 62 --> 70
- rescaling Right_Putamen from 80 --> 78
- rescaling Right_Pallidum from 97 --> 91
- rescaling Right_Hippocampus from 53 --> 62
- rescaling Right_Amygdala from 55 --> 61
- rescaling Right_Accumbens_area from 65 --> 69
- rescaling Right_VentralDC from 86 --> 93
- rescaling Fifth_Ventricle from 40 --> 34
- rescaling WM_hypointensities from 78 --> 78
- rescaling non_WM_hypointensities from 40 --> 45
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 585128
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 170 changed.
- pass 2: 4 changed.
- pass 3: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aparc+aseg.mgz
- mri_aparc2aseg --s 0051366 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051366
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aparc.a2009s+aseg.mgz
- useribbon 0
- baseoffset 10100
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.39
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 107
- rescaling Left_Cerebral_Cortex from 61 --> 57
- rescaling Left_Lateral_Ventricle from 13 --> 18
- rescaling Left_Inf_Lat_Vent from 34 --> 33
- rescaling Left_Cerebellum_White_Matter from 86 --> 85
- rescaling Left_Cerebellum_Cortex from 60 --> 58
- rescaling Left_Thalamus from 94 --> 99
- rescaling Left_Thalamus_Proper from 84 --> 86
- rescaling Left_Caudate from 75 --> 69
- rescaling Left_Putamen from 80 --> 82
- rescaling Left_Pallidum from 98 --> 95
- rescaling Third_Ventricle from 25 --> 27
- rescaling Fourth_Ventricle from 22 --> 19
- rescaling Brain_Stem from 81 --> 82
- rescaling Left_Hippocampus from 57 --> 58
- rescaling Left_Amygdala from 56 --> 63
- rescaling CSF from 32 --> 38
- rescaling Left_Accumbens_area from 62 --> 62
- rescaling Left_VentralDC from 87 --> 90
- rescaling Right_Cerebral_White_Matter from 105 --> 106
- rescaling Right_Cerebral_Cortex from 58 --> 60
- rescaling Right_Lateral_Ventricle from 13 --> 14
- rescaling Right_Inf_Lat_Vent from 25 --> 26
- rescaling Right_Cerebellum_White_Matter from 87 --> 85
- rescaling Right_Cerebellum_Cortex from 59 --> 63
- rescaling Right_Thalamus_Proper from 85 --> 89
- rescaling Right_Caudate from 62 --> 70
- rescaling Right_Putamen from 80 --> 78
- rescaling Right_Pallidum from 97 --> 91
- rescaling Right_Hippocampus from 53 --> 62
- rescaling Right_Amygdala from 55 --> 61
- rescaling Right_Accumbens_area from 65 --> 69
- rescaling Right_VentralDC from 86 --> 93
- rescaling Fifth_Ventricle from 40 --> 34
- rescaling WM_hypointensities from 78 --> 78
- rescaling non_WM_hypointensities from 40 --> 45
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 585101
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 170 changed.
- pass 2: 4 changed.
- pass 3: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aparc.a2009s+aseg.mgz
- mri_aparc2aseg --s 0051366 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051366
- outvol mri/aparc.DKTatlas+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.39
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 107
- rescaling Left_Cerebral_Cortex from 61 --> 57
- rescaling Left_Lateral_Ventricle from 13 --> 18
- rescaling Left_Inf_Lat_Vent from 34 --> 33
- rescaling Left_Cerebellum_White_Matter from 86 --> 85
- rescaling Left_Cerebellum_Cortex from 60 --> 58
- rescaling Left_Thalamus from 94 --> 99
- rescaling Left_Thalamus_Proper from 84 --> 86
- rescaling Left_Caudate from 75 --> 69
- rescaling Left_Putamen from 80 --> 82
- rescaling Left_Pallidum from 98 --> 95
- rescaling Third_Ventricle from 25 --> 27
- rescaling Fourth_Ventricle from 22 --> 19
- rescaling Brain_Stem from 81 --> 82
- rescaling Left_Hippocampus from 57 --> 58
- rescaling Left_Amygdala from 56 --> 63
- rescaling CSF from 32 --> 38
- rescaling Left_Accumbens_area from 62 --> 62
- rescaling Left_VentralDC from 87 --> 90
- rescaling Right_Cerebral_White_Matter from 105 --> 106
- rescaling Right_Cerebral_Cortex from 58 --> 60
- rescaling Right_Lateral_Ventricle from 13 --> 14
- rescaling Right_Inf_Lat_Vent from 25 --> 26
- rescaling Right_Cerebellum_White_Matter from 87 --> 85
- rescaling Right_Cerebellum_Cortex from 59 --> 63
- rescaling Right_Thalamus_Proper from 85 --> 89
- rescaling Right_Caudate from 62 --> 70
- rescaling Right_Putamen from 80 --> 78
- rescaling Right_Pallidum from 97 --> 91
- rescaling Right_Hippocampus from 53 --> 62
- rescaling Right_Amygdala from 55 --> 61
- rescaling Right_Accumbens_area from 65 --> 69
- rescaling Right_VentralDC from 86 --> 93
- rescaling Fifth_Ventricle from 40 --> 34
- rescaling WM_hypointensities from 78 --> 78
- rescaling non_WM_hypointensities from 40 --> 45
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 585101
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 170 changed.
- pass 2: 4 changed.
- pass 3: 0 changed.
- nchanged = 0
- Writing output aseg to mri/aparc.DKTatlas+aseg.mgz
- PIDs (19224 19227 19230) completed and logs appended.
- #-----------------------------------------
- #@# APas-to-ASeg Sun Oct 8 02:32:11 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- Sun Oct 8 02:32:11 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- $Id: apas2aseg,v 1.2 2016/02/12 21:43:14 zkaufman Exp $
- Linux tars-963 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- mri_binarize --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri
- cmdline mri_binarize.bin --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- input aparc+aseg.mgz
- frame 0
- nErode3d 0
- nErode2d 0
- output aseg.mgz
- Binarizing based on threshold
- min -infinity
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Replacing 72
- 1: 1000 3
- 2: 2000 42
- 3: 1001 3
- 4: 2001 42
- 5: 1002 3
- 6: 2002 42
- 7: 1003 3
- 8: 2003 42
- 9: 1004 3
- 10: 2004 42
- 11: 1005 3
- 12: 2005 42
- 13: 1006 3
- 14: 2006 42
- 15: 1007 3
- 16: 2007 42
- 17: 1008 3
- 18: 2008 42
- 19: 1009 3
- 20: 2009 42
- 21: 1010 3
- 22: 2010 42
- 23: 1011 3
- 24: 2011 42
- 25: 1012 3
- 26: 2012 42
- 27: 1013 3
- 28: 2013 42
- 29: 1014 3
- 30: 2014 42
- 31: 1015 3
- 32: 2015 42
- 33: 1016 3
- 34: 2016 42
- 35: 1017 3
- 36: 2017 42
- 37: 1018 3
- 38: 2018 42
- 39: 1019 3
- 40: 2019 42
- 41: 1020 3
- 42: 2020 42
- 43: 1021 3
- 44: 2021 42
- 45: 1022 3
- 46: 2022 42
- 47: 1023 3
- 48: 2023 42
- 49: 1024 3
- 50: 2024 42
- 51: 1025 3
- 52: 2025 42
- 53: 1026 3
- 54: 2026 42
- 55: 1027 3
- 56: 2027 42
- 57: 1028 3
- 58: 2028 42
- 59: 1029 3
- 60: 2029 42
- 61: 1030 3
- 62: 2030 42
- 63: 1031 3
- 64: 2031 42
- 65: 1032 3
- 66: 2032 42
- 67: 1033 3
- 68: 2033 42
- 69: 1034 3
- 70: 2034 42
- 71: 1035 3
- 72: 2035 42
- Found 0 values in range
- Counting number of voxels in first frame
- Found 0 voxels in final mask
- Count: 0 0.000000 16777216 0.000000
- mri_binarize done
-
- Started at Sun Oct 8 02:32:11 CEST 2017
- Ended at Sun Oct 8 02:32:17 CEST 2017
- Apas2aseg-Run-Time-Sec 6
-
- apas2aseg Done
- #--------------------------------------------
- #@# ASeg Stats Sun Oct 8 02:32:17 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051366
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051366
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- Computing euler number
- orig.nofix lheno = -124, rheno = -112
- orig.nofix lhholes = 63, rhholes = 57
- Loading mri/aseg.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 50 segmentations
- Computing statistics for each segmentation
- Reporting on 45 segmentations
- Using PrintSegStat
- mri_segstats done
- #-----------------------------------------
- #@# WMParc Sun Oct 8 02:34:12 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366
- mri_aparc2aseg --s 0051366 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051366
- outvol mri/wmparc.mgz
- useribbon 0
- baseoffset 0
- labeling wm
- labeling hypo-intensities as wm
- dmaxctx 5.000000
- RipUnknown 1
- CtxSeg /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aparc+aseg.mgz
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/ribbon.mgz
- Loading filled from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/ribbon.mgz
- Ripping vertices labeled as unkown
- Ripped 9328 vertices from left hemi
- Ripped 8510 vertices from right hemi
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aseg.mgz
- Loading Ctx Seg File /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/aparc+aseg.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1043915
- Used brute-force search on 332 voxels
- Fixing Parahip LH WM
- Found 10 clusters
- 0 k 2.000000
- 1 k 6.000000
- 2 k 1.000000
- 3 k 1.000000
- 4 k 1.000000
- 5 k 2.000000
- 6 k 10.000000
- 7 k 1.000000
- 8 k 1.000000
- 9 k 1484.000000
- Fixing Parahip RH WM
- Found 7 clusters
- 0 k 1.000000
- 1 k 1.000000
- 2 k 1.000000
- 3 k 1611.000000
- 4 k 1.000000
- 5 k 2.000000
- 6 k 8.000000
- Writing output aseg to mri/wmparc.mgz
- mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051366 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051366 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- Loading mri/wmparc.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 390 segmentations
- Computing statistics for each segmentation
- Reporting on 70 segmentations
- Using PrintSegStat
- mri_segstats done
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label
- #--------------------------------------------
- #@# BA_exvivo Labels lh Sun Oct 8 02:44:12 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 21006 of (21006 21012 21018 21023 21028) to complete...
- Waiting for PID 21012 of (21006 21012 21018 21023 21028) to complete...
- Waiting for PID 21018 of (21006 21012 21018 21023 21028) to complete...
- Waiting for PID 21023 of (21006 21012 21018 21023 21028) to complete...
- Waiting for PID 21028 of (21006 21012 21018 21023 21028) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4129 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4129 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 302
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.label 4431
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7909 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7909 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 572
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.label 8481
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA3a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4077 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4077 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 259
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.label 4336
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA3b_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5983 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5983 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 462
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.label 6445
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA4a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5784 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5784 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 774
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.label 6558
- mri_label2label: Done
- PIDs (21006 21012 21018 21023 21028) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 21091 of (21091 21097 21103 21107) to complete...
- Waiting for PID 21097 of (21091 21097 21103 21107) to complete...
- Waiting for PID 21103 of (21091 21097 21103 21107) to complete...
- Waiting for PID 21107 of (21091 21097 21103 21107) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA4p_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4070 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4070 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 462
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.label 4532
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA6_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 13589 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 13589 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 2134
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.label 15723
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA44_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4181 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4181 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 423
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.label 4604
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0051366 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA45_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3422 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3422 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 637
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.label 4059
- mri_label2label: Done
- PIDs (21091 21097 21103 21107) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0051366 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0051366 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0051366 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0051366 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0051366 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 21156 of (21156 21162 21168 21173 21180) to complete...
- Waiting for PID 21162 of (21156 21162 21168 21173 21180) to complete...
- Waiting for PID 21168 of (21156 21162 21168 21173 21180) to complete...
- Waiting for PID 21173 of (21156 21162 21168 21173 21180) to complete...
- Waiting for PID 21180 of (21156 21162 21168 21173 21180) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0051366 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.V1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4641 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4641 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 3766
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.label 8407
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0051366 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.V2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8114 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8114 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 5873
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.label 13987
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0051366 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.MT_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2018 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2018 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 726
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.label 2744
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0051366 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1290 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1290 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 111
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.label 1401
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0051366 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1199 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1199 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 76
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.label 1275
- mri_label2label: Done
- PIDs (21156 21162 21168 21173 21180) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 21236 of (21236 21242 21248 21253 21261) to complete...
- Waiting for PID 21242 of (21236 21242 21248 21253 21261) to complete...
- Waiting for PID 21248 of (21236 21242 21248 21253 21261) to complete...
- Waiting for PID 21253 of (21236 21242 21248 21253 21261) to complete...
- Waiting for PID 21261 of (21236 21242 21248 21253 21261) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1014 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1014 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 65
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.thresh.label 1079
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2092 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2092 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 93
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.thresh.label 2185
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1504 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1504 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 69
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.thresh.label 1573
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1996 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1996 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 181
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.thresh.label 2177
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2319 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2319 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 334
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.thresh.label 2653
- mri_label2label: Done
- PIDs (21236 21242 21248 21253 21261) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 21355 of (21355 21361 21367 21373) to complete...
- Waiting for PID 21361 of (21355 21361 21367 21373) to complete...
- Waiting for PID 21367 of (21355 21361 21367 21373) to complete...
- Waiting for PID 21373 of (21355 21361 21367 21373) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1549 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1549 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 206
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.thresh.label 1755
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7035 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7035 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 1328
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.thresh.label 8363
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1912 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 184
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.thresh.label 2096
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1151 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1151 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 227
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.thresh.label 1378
- mri_label2label: Done
- PIDs (21355 21361 21367 21373) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 21440 of (21440 21446 21452 21458 21464) to complete...
- Waiting for PID 21446 of (21440 21446 21452 21458 21464) to complete...
- Waiting for PID 21452 of (21440 21446 21452 21458 21464) to complete...
- Waiting for PID 21458 of (21440 21446 21452 21458 21464) to complete...
- Waiting for PID 21464 of (21440 21446 21452 21458 21464) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3405 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3405 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 2822
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.thresh.label 6227
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3334 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3334 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 2667
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.thresh.label 6001
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 513 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 513 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 215
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.thresh.label 728
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 470 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 470 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 45
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.thresh.label 515
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./lh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 450 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 450 nlabel points
- Performing mapping from target back to the source label 156857
- Number of reverse mapping hits = 25
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.thresh.label 475
- mri_label2label: Done
- PIDs (21440 21446 21452 21458 21464) completed and logs appended.
- mris_label2annot --s 0051366 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label
- cmdline mris_label2annot --s 0051366 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- subject 0051366
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 106849 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.BA_exvivo.annot
- mris_label2annot --s 0051366 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label
- cmdline mris_label2annot --s 0051366 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- subject 0051366
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 126258 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/lh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab 0051366 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1154 681 1948 2.137 0.571 0.135 0.048 27 2.0 BA1_exvivo
- 3892 2584 6353 2.259 0.528 0.111 0.027 39 4.2 BA2_exvivo
- 1148 800 1237 1.869 0.411 0.136 0.034 10 1.5 BA3a_exvivo
- 2635 1665 3794 1.961 0.654 0.111 0.027 30 3.0 BA3b_exvivo
- 2027 1210 3786 2.657 0.466 0.116 0.038 24 2.9 BA4a_exvivo
- 1669 1016 2634 2.535 0.481 0.112 0.048 19 3.9 BA4p_exvivo
- 11255 7435 24589 2.815 0.565 0.123 0.031 132 13.3 BA6_exvivo
- 2387 1607 5568 2.951 0.545 0.125 0.032 36 2.8 BA44_exvivo
- 3022 2038 6307 2.695 0.599 0.134 0.032 44 3.9 BA45_exvivo
- 5677 3605 6359 1.834 0.523 0.134 0.037 69 9.0 V1_exvivo
- 11410 7148 16715 2.177 0.570 0.143 0.040 171 17.4 V2_exvivo
- 2528 1647 4738 2.588 0.476 0.116 0.025 30 2.4 MT_exvivo
- 618 401 2136 3.696 0.687 0.116 0.051 8 1.0 perirhinal_exvivo
- 586 433 1591 3.040 0.749 0.119 0.030 6 0.9 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0051366 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 298757
- Total vertex volume 294375 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 660 375 1120 2.148 0.500 0.138 0.047 13 1.1 BA1_exvivo
- 1367 897 2124 2.164 0.485 0.100 0.024 10 1.3 BA2_exvivo
- 962 686 947 1.811 0.380 0.137 0.035 8 1.3 BA3a_exvivo
- 1617 1022 1730 1.646 0.389 0.098 0.023 13 1.7 BA3b_exvivo
- 1987 1201 3511 2.634 0.483 0.108 0.034 19 2.5 BA4a_exvivo
- 1339 818 1992 2.499 0.450 0.115 0.051 17 3.5 BA4p_exvivo
- 6816 4452 15300 2.811 0.572 0.125 0.034 85 8.5 BA6_exvivo
- 1453 1009 3708 2.979 0.456 0.133 0.037 27 1.8 BA44_exvivo
- 1185 800 3040 3.012 0.535 0.153 0.041 23 2.0 BA45_exvivo
- 6039 3790 6781 1.833 0.520 0.132 0.038 74 9.4 V1_exvivo
- 5827 3736 7711 2.007 0.540 0.154 0.043 92 10.2 V2_exvivo
- 693 453 1518 2.679 0.443 0.119 0.025 10 0.6 MT_exvivo
- 333 203 1255 3.813 0.691 0.104 0.041 4 0.5 perirhinal_exvivo
- 321 221 912 3.281 0.638 0.090 0.018 2 0.3 entorhinal_exvivo
- #--------------------------------------------
- #@# BA_exvivo Labels rh Sun Oct 8 02:47:44 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 21600 of (21600 21606 21612 21616 21624) to complete...
- Waiting for PID 21606 of (21600 21606 21612 21616 21624) to complete...
- Waiting for PID 21612 of (21600 21606 21612 21616 21624) to complete...
- Waiting for PID 21616 of (21600 21606 21612 21616 21624) to complete...
- Waiting for PID 21624 of (21600 21606 21612 21616 21624) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3962 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3962 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 508
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.label 4470
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6687 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6687 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 555
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.label 7242
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA3a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3980 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3980 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 228
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.label 4208
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA3b_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4522 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4522 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 471
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.label 4993
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA4a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5747 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5747 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 577
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.label 6324
- mri_label2label: Done
- PIDs (21600 21606 21612 21616 21624) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 21684 of (21684 21690 21696 21702) to complete...
- Waiting for PID 21690 of (21684 21690 21696 21702) to complete...
- Waiting for PID 21696 of (21684 21690 21696 21702) to complete...
- Waiting for PID 21702 of (21684 21690 21696 21702) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA4p_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4473 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4473 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 394
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.label 4867
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA6_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 12256 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 12256 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 795
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.label 13051
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA44_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6912 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 1080
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.label 7992
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0051366 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA45_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5355 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5355 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 1604
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.label 6959
- mri_label2label: Done
- PIDs (21684 21690 21696 21702) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0051366 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0051366 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0051366 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0051366 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0051366 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 21761 of (21761 21767 21773 21779 21785) to complete...
- Waiting for PID 21767 of (21761 21767 21773 21779 21785) to complete...
- Waiting for PID 21773 of (21761 21767 21773 21779 21785) to complete...
- Waiting for PID 21779 of (21761 21767 21773 21779 21785) to complete...
- Waiting for PID 21785 of (21761 21767 21773 21779 21785) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0051366 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.V1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4727 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4727 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 3407
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.label 8134
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0051366 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.V2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8016 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8016 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 6148
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.label 14164
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0051366 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.MT_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1932 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1932 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 1057
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.label 2989
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0051366 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1038 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1038 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 180
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.label 1218
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0051366 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 752 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 752 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 85
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.label 837
- mri_label2label: Done
- PIDs (21761 21767 21773 21779 21785) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 21835 of (21835 21841 21847 21851 21859) to complete...
- Waiting for PID 21841 of (21835 21841 21847 21851 21859) to complete...
- Waiting for PID 21847 of (21835 21841 21847 21851 21859) to complete...
- Waiting for PID 21851 of (21835 21841 21847 21851 21859) to complete...
- Waiting for PID 21859 of (21835 21841 21847 21851 21859) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 876 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 876 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 237
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.thresh.label 1113
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2688 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2688 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 72
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.thresh.label 2760
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1698 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1698 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 84
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.thresh.label 1782
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2183 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2183 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 169
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.thresh.label 2352
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1388 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1388 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 156
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.thresh.label 1544
- mri_label2label: Done
- PIDs (21835 21841 21847 21851 21859) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 21902 of (21902 21908 21914 21920) to complete...
- Waiting for PID 21908 of (21902 21908 21914 21920) to complete...
- Waiting for PID 21914 of (21902 21908 21914 21920) to complete...
- Waiting for PID 21920 of (21902 21908 21914 21920) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1489 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1489 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 130
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.thresh.label 1619
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6959 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6959 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 377
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.thresh.label 7336
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1012 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1012 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 351
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.thresh.label 1363
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1178 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1178 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 216
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.thresh.label 1394
- mri_label2label: Done
- PIDs (21902 21908 21914 21920) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 21978 of (21978 21984 21990 21995 22002) to complete...
- Waiting for PID 21984 of (21978 21984 21990 21995 22002) to complete...
- Waiting for PID 21990 of (21978 21984 21990 21995 22002) to complete...
- Waiting for PID 21995 of (21978 21984 21990 21995 22002) to complete...
- Waiting for PID 22002 of (21978 21984 21990 21995 22002) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3232 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3232 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 2304
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.thresh.label 5536
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3437 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3437 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 2895
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.thresh.label 6332
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 268 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 268 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 160
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.thresh.label 428
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 694 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 694 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 116
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.thresh.label 810
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0051366 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051366
- trglabel = ./rh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 291 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 291 nlabel points
- Performing mapping from target back to the source label 158014
- Number of reverse mapping hits = 22
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.thresh.label 313
- mri_label2label: Done
- PIDs (21978 21984 21990 21995 22002) completed and logs appended.
- mris_label2annot --s 0051366 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label
- cmdline mris_label2annot --s 0051366 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- subject 0051366
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 110147 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.BA_exvivo.annot
- mris_label2annot --s 0051366 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label
- cmdline mris_label2annot --s 0051366 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-963
- machine x86_64
- user ntraut
- subject 0051366
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 131178 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/label/rh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab 0051366 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 1151 523 1853 2.370 0.612 0.116 0.042 20 1.7 BA1_exvivo
- 3078 1996 4700 2.286 0.536 0.101 0.024 26 3.2 BA2_exvivo
- 1168 801 1110 1.829 0.398 0.127 0.034 9 1.6 BA3a_exvivo
- 2157 1344 2673 1.792 0.584 0.104 0.029 21 2.3 BA3b_exvivo
- 1746 961 2885 2.541 0.450 0.100 0.035 19 2.5 BA4a_exvivo
- 1448 863 2040 2.423 0.468 0.105 0.039 15 2.8 BA4p_exvivo
- 7245 4613 15416 2.755 0.549 0.120 0.036 97 10.2 BA6_exvivo
- 3777 2617 8067 2.768 0.560 0.123 0.032 50 4.7 BA44_exvivo
- 5063 3468 11097 2.657 0.564 0.131 0.033 74 6.5 BA45_exvivo
- 5512 3650 7051 1.875 0.650 0.149 0.044 83 11.0 V1_exvivo
- 11653 7119 16258 2.141 0.598 0.144 0.045 180 20.6 V2_exvivo
- 2804 1841 4902 2.584 0.419 0.130 0.035 38 3.7 MT_exvivo
- 681 405 2315 3.822 0.763 0.138 0.048 10 1.4 perirhinal_exvivo
- 384 260 1109 3.520 0.608 0.097 0.024 2 0.3 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0051366 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051366/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 299669
- Total vertex volume 295414 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1786444 mm^3 (det: 1.090493 )
- lhCtxGM: 293371.339 292688.000 diff= 683.3 pctdiff= 0.233
- rhCtxGM: 294607.488 293780.000 diff= 827.5 pctdiff= 0.281
- lhCtxWM: 233490.047 233304.000 diff= 186.0 pctdiff= 0.080
- rhCtxWM: 226273.840 227808.000 diff=-1534.2 pctdiff=-0.678
- SubCortGMVol 67894.000
- SupraTentVol 1150430.715 (1148138.000) diff=2292.715 pctdiff=0.199
- SupraTentVolNotVent 1117800.715 (1115508.000) diff=2292.715 pctdiff=0.205
- BrainSegVol 1313843.000 (1310302.000) diff=3541.000 pctdiff=0.270
- BrainSegVolNotVent 1276685.000 (1276700.715) diff=-15.715 pctdiff=-0.001
- BrainSegVolNotVent 1276685.000
- CerebellumVol 161030.000
- VentChorVol 32630.000
- 3rd4th5thCSF 4528.000
- CSFVol 987.000, OptChiasmVol 147.000
- MaskVol 1786320.000
- 881 370 1195 2.238 0.567 0.107 0.051 16 1.5 BA1_exvivo
- 1626 1058 2607 2.248 0.492 0.084 0.017 9 1.1 BA2_exvivo
- 1043 706 915 1.817 0.365 0.130 0.034 8 1.5 BA3a_exvivo
- 1668 1096 1726 1.577 0.374 0.094 0.022 10 1.6 BA3b_exvivo
- 1093 589 1712 2.446 0.464 0.115 0.042 15 1.8 BA4a_exvivo
- 1181 730 1643 2.413 0.453 0.098 0.026 7 1.4 BA4p_exvivo
- 4556 2860 9623 2.739 0.523 0.119 0.037 62 6.3 BA6_exvivo
- 1201 855 3217 2.798 0.514 0.128 0.041 26 1.7 BA44_exvivo
- 1128 800 2760 2.708 0.499 0.133 0.034 19 1.5 BA45_exvivo
- 5229 3499 6570 1.853 0.632 0.147 0.043 76 10.2 V1_exvivo
- 6154 3741 7890 1.964 0.590 0.153 0.049 102 12.6 V2_exvivo
- 412 259 876 2.877 0.420 0.147 0.037 7 0.6 MT_exvivo
- 419 252 1517 3.819 0.819 0.140 0.051 7 0.8 perirhinal_exvivo
- 245 164 774 3.647 0.537 0.110 0.024 3 0.3 entorhinal_exvivo
- Started at Sat Oct 7 16:52:34 CEST 2017
- Ended at Sun Oct 8 02:51:16 CEST 2017
- #@#%# recon-all-run-time-hours 9.978
- recon-all -s 0051366 finished without error at Sun Oct 8 02:51:16 CEST 2017
|
