We use cookies to ensure you get the best experience on our website
Home Explore Help News
Register Sign In
reference-preprocessing
/
ABIDE_fs-6.0.0
5
0
Fork 0
Files Issues 0 Pull Requests 0 Wiki
Branch: master
Branches Tags
ABIDE_fs-6.0.0
/
0051275
/
stats
/
aseg.stats

aseg.stats 9.6 KB
Permalink History Download

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125 
  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051275 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-376
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051275
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1097888.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1086262.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1086831.810004, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8000.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 257024.136220, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 262997.357935, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 520021.494155, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 197144.975200, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 198789.340649, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 395934.315849, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 56272.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 668078.494155, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 983398.810004, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 975398.810004, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 971511.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1441062.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.788070, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.034402, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 27, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 38, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 65, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1393134.925004, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 05:21:51 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 22:17:14 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 22:17:14 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      3088     3385.3  Left-Lateral-Ventricle            30.9152    16.7687     0.0000    96.0000    96.0000 
    82. 

  82.   2   5       179      202.4  Left-Inf-Lat-Vent                 40.4693    15.1076     1.0000    73.0000    72.0000 
    83. 

  83.   3   7     11790    12224.4  Left-Cerebellum-White-Matter      81.3950     8.1718    24.0000   104.0000    80.0000 
    84. 

  84.   4   8     44329    44557.4  Left-Cerebellum-Cortex            51.0270    12.2141     1.0000   104.0000   103.0000 
    85. 

  85.   5  10      7691     7391.6  Left-Thalamus-Proper              78.4331    11.0751    24.0000   109.0000    85.0000 
    86. 

  86.   6  11      3097     3068.8  Left-Caudate                      67.6713     8.0893    35.0000   100.0000    65.0000 
    87. 

  87.   7  12      5093     5022.9  Left-Putamen                      74.4752     7.2245    36.0000   108.0000    72.0000 
    88. 

  88.   8  13      1880     1771.0  Left-Pallidum                     89.9069     5.6664    70.0000   107.0000    37.0000 
    89. 

  89.   9  14       846      904.3  3rd-Ventricle                     32.6726    13.0053     6.0000    88.0000    82.0000 
    90. 

  90.  10  15      2083     2187.4  4th-Ventricle                     16.4085    10.8319     0.0000    71.0000    71.0000 
    91. 

  91.  11  16     18120    18256.7  Brain-Stem                        78.5519    10.4339    12.0000   110.0000    98.0000 
    92. 

  92.  12  17      3821     3677.0  Left-Hippocampus                  56.1895    10.6379     9.0000   106.0000    97.0000 
    93. 

  93.  13  18      1609     1567.2  Left-Amygdala                     55.7887     8.1494     6.0000    87.0000    81.0000 
    94. 

  94.  14  24       697      709.8  CSF                               35.2798    15.1829     1.0000    98.0000    97.0000 
    95. 

  95.  15  26       631      607.4  Left-Accumbens-area               64.1696     6.0046    28.0000    81.0000    53.0000 
    96. 

  96.  16  28      4164     4082.7  Left-VentralDC                    85.6647    11.8229    37.0000   122.0000    85.0000 
    97. 

  97.  17  30         8        9.4  Left-vessel                       56.3750     7.4054    45.0000    66.0000    21.0000 
    98. 

  98.  18  31       511      474.8  Left-choroid-plexus               51.0235    12.8756    19.0000    85.0000    66.0000 
    99. 

  99.  19  43      3502     3748.1  Right-Lateral-Ventricle           26.7016    17.1845     0.0000    94.0000    94.0000 
    100. 

  100.  20  44       185      196.2  Right-Inf-Lat-Vent                32.5027    15.4037     1.0000    69.0000    68.0000 
    101. 

  101.  21  46     11016    11409.1  Right-Cerebellum-White-Matter     79.5754     7.4029    21.0000   107.0000    86.0000 
    102. 

  102.  22  47     45732    45816.9  Right-Cerebellum-Cortex           52.1447    11.2849     1.0000    91.0000    90.0000 
    103. 

  103.  23  49      7887     7565.6  Right-Thalamus-Proper             77.8192    10.7646    13.0000   108.0000    95.0000 
    104. 

  104.  24  50      3658     3565.6  Right-Caudate                     65.8617     8.9134    31.0000    92.0000    61.0000 
    105. 

  105.  25  51      5244     5126.0  Right-Putamen                     72.4514     6.9924    42.0000   105.0000    63.0000 
    106. 

  106.  26  52      1621     1521.8  Right-Pallidum                    88.6693     5.5188    68.0000   106.0000    38.0000 
    107. 

  107.  27  53      3712     3594.6  Right-Hippocampus                 56.9469     9.2305    14.0000    95.0000    81.0000 
    108. 

  108.  28  54      1473     1416.7  Right-Amygdala                    56.7828     7.4842    26.0000    83.0000    57.0000 
    109. 

  109.  29  58       666      628.6  Right-Accumbens-area              63.8123     5.7877    38.0000    87.0000    49.0000 
    110. 

  110.  30  60      4072     3956.2  Right-VentralDC                   84.3821    11.5412    36.0000   122.0000    86.0000 
    111. 

  111.  31  62         5        9.1  Right-vessel                      52.6000     3.7816    50.0000    59.0000     9.0000 
    112. 

  112.  32  63       535      493.3  Right-choroid-plexus              49.8000    13.6335     6.0000    83.0000    77.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1532     1254.3  WM-hypointensities                68.7839    13.0924    27.0000   102.0000    75.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       167      169.6  Optic-Chiasm                      80.4611    19.6609    31.0000   117.0000    86.0000 
    121. 

  121.  41 251       795      766.8  CC_Posterior                     100.2780    14.8325    26.0000   122.0000    96.0000 
    122. 

  122.  42 252       429      387.4  CC_Mid_Posterior                  92.3706    15.4852    35.0000   120.0000    85.0000 
    123. 

  123.  43 253       554      501.2  CC_Central                        93.1209    17.7755    26.0000   122.0000    96.0000 
    124. 

  124.  44 254       552      488.0  CC_Mid_Anterior                   96.5054    19.6655    15.0000   125.0000   110.0000 
    125. 

  125.  45 255       618      586.9  CC_Anterior                      106.3058    16.0446    11.0000   127.0000   116.0000 
    126.