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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051258
- # sysname Linux
- # hostname tars-904
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051258
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1121102.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1107898.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1107805.602076, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9937.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 263210.296366, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 260553.835033, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 523764.131399, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 190188.328386, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 185134.142290, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 375322.470677, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64665.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 704222.131399, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 977245.602076, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 967308.602076, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 963704.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1513134.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.793308, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.070716, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 110, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 127, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 237, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1413198.692333, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 06:07:24
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 21:48:00
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 21:48:00
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3895 4270.9 Left-Lateral-Ventricle 24.8015 15.6730 0.0000 85.0000 85.0000
- 2 5 179 197.4 Left-Inf-Lat-Vent 33.4413 14.0653 0.0000 73.0000 73.0000
- 3 7 14098 14365.8 Left-Cerebellum-White-Matter 80.8639 9.0480 33.0000 111.0000 78.0000
- 4 8 56772 57081.0 Left-Cerebellum-Cortex 49.6951 11.8602 0.0000 99.0000 99.0000
- 5 10 8646 8347.4 Left-Thalamus-Proper 76.7861 11.9172 27.0000 111.0000 84.0000
- 6 11 4469 4389.4 Left-Caudate 63.3573 9.4076 34.0000 102.0000 68.0000
- 7 12 5909 5778.5 Left-Putamen 69.7282 8.5138 17.0000 102.0000 85.0000
- 8 13 2408 2285.8 Left-Pallidum 88.8405 6.6541 57.0000 113.0000 56.0000
- 9 14 814 883.6 3rd-Ventricle 29.2764 14.7534 0.0000 74.0000 74.0000
- 10 15 1460 1573.1 4th-Ventricle 22.3377 13.4462 0.0000 70.0000 70.0000
- 11 16 19660 19824.1 Brain-Stem 77.6770 11.1012 11.0000 131.0000 120.0000
- 12 17 4155 4012.9 Left-Hippocampus 52.7904 10.2923 4.0000 93.0000 89.0000
- 13 18 1522 1483.8 Left-Amygdala 53.0197 10.0879 5.0000 92.0000 87.0000
- 14 24 993 1017.2 CSF 31.8892 13.9926 0.0000 67.0000 67.0000
- 15 26 917 881.0 Left-Accumbens-area 59.2028 7.0324 32.0000 81.0000 49.0000
- 16 28 4366 4256.6 Left-VentralDC 82.1003 12.7525 13.0000 125.0000 112.0000
- 17 30 26 40.8 Left-vessel 40.7692 13.0148 16.0000 60.0000 44.0000
- 18 31 627 539.5 Left-choroid-plexus 46.8086 14.8703 14.0000 84.0000 70.0000
- 19 43 4235 4549.9 Right-Lateral-Ventricle 21.5705 15.8107 0.0000 94.0000 94.0000
- 20 44 431 466.7 Right-Inf-Lat-Vent 25.8886 14.3081 0.0000 66.0000 66.0000
- 21 46 14120 14418.1 Right-Cerebellum-White-Matter 78.8835 9.2147 26.0000 114.0000 88.0000
- 22 47 57007 57275.1 Right-Cerebellum-Cortex 49.4396 11.3754 0.0000 98.0000 98.0000
- 23 49 8671 8399.5 Right-Thalamus-Proper 76.8658 11.4114 23.0000 115.0000 92.0000
- 24 50 4867 4740.1 Right-Caudate 61.9406 10.4786 26.0000 98.0000 72.0000
- 25 51 5797 5699.2 Right-Putamen 67.3241 8.5113 23.0000 114.0000 91.0000
- 26 52 2211 2090.5 Right-Pallidum 85.7910 6.8404 59.0000 105.0000 46.0000
- 27 53 4151 4009.3 Right-Hippocampus 54.3112 10.3261 16.0000 98.0000 82.0000
- 28 54 1658 1593.1 Right-Amygdala 53.8239 9.1901 7.0000 89.0000 82.0000
- 29 58 882 843.0 Right-Accumbens-area 59.2415 7.1045 33.0000 81.0000 48.0000
- 30 60 4093 3959.7 Right-VentralDC 82.6267 13.1759 8.0000 118.0000 110.0000
- 31 62 17 26.2 Right-vessel 46.7647 12.0754 20.0000 65.0000 45.0000
- 32 63 573 498.2 Right-choroid-plexus 47.6771 13.6032 15.0000 84.0000 69.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 2029 1685.4 WM-hypointensities 68.3948 13.3389 28.0000 113.0000 85.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 183 207.1 Optic-Chiasm 81.3497 22.7156 30.0000 128.0000 98.0000
- 41 251 807 783.2 CC_Posterior 99.4597 13.6520 41.0000 135.0000 94.0000
- 42 252 460 410.5 CC_Mid_Posterior 90.6109 20.5787 16.0000 136.0000 120.0000
- 43 253 593 534.1 CC_Central 90.9966 21.2409 21.0000 137.0000 116.0000
- 44 254 524 464.7 CC_Mid_Anterior 94.8702 20.5547 8.0000 129.0000 121.0000
- 45 255 757 731.1 CC_Anterior 103.7424 18.7149 35.0000 135.0000 100.0000
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