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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051256
- # sysname Linux
- # hostname tars-381
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051256
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1252132.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1229744.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1230320.654524, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 17707.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 279750.834409, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 281964.314822, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 561715.149231, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 220847.933837, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 218269.571456, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 439117.505293, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 62062.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 762374.149231, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1083549.654524, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1065842.654524, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1062127.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1671008.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.790579, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.055051, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 39, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 35, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 74, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1583816.935167, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 05:21:48
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 21:47:41
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 21:47:41
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7468 7692.8 Left-Lateral-Ventricle 16.4867 13.7406 0.0000 86.0000 86.0000
- 2 5 300 322.9 Left-Inf-Lat-Vent 32.9367 15.6735 0.0000 70.0000 70.0000
- 3 7 14522 14996.4 Left-Cerebellum-White-Matter 78.8708 8.5304 16.0000 108.0000 92.0000
- 4 8 67239 67499.4 Left-Cerebellum-Cortex 48.7026 12.2409 0.0000 95.0000 95.0000
- 5 10 7970 7707.6 Left-Thalamus-Proper 77.5448 11.2812 27.0000 107.0000 80.0000
- 6 11 3954 3890.4 Left-Caudate 63.4054 9.4806 29.0000 97.0000 68.0000
- 7 12 6227 6106.4 Left-Putamen 69.4251 8.4865 13.0000 108.0000 95.0000
- 8 13 2149 2024.3 Left-Pallidum 88.2168 6.7708 67.0000 107.0000 40.0000
- 9 14 1113 1131.6 3rd-Ventricle 25.1168 14.6096 0.0000 88.0000 88.0000
- 10 15 2270 2339.4 4th-Ventricle 16.6401 12.3774 0.0000 69.0000 69.0000
- 11 16 21755 21990.1 Brain-Stem 76.8816 10.5522 4.0000 113.0000 109.0000
- 12 17 4137 3962.0 Left-Hippocampus 53.1429 10.9143 1.0000 107.0000 106.0000
- 13 18 1636 1569.1 Left-Amygdala 54.5269 9.3912 15.0000 86.0000 71.0000
- 14 24 1299 1305.8 CSF 30.2779 14.0167 1.0000 72.0000 71.0000
- 15 26 786 745.8 Left-Accumbens-area 59.9008 6.7214 28.0000 82.0000 54.0000
- 16 28 4444 4443.1 Left-VentralDC 86.0509 11.9190 28.0000 118.0000 90.0000
- 17 30 12 16.4 Left-vessel 51.5000 11.7667 34.0000 72.0000 38.0000
- 18 31 606 535.4 Left-choroid-plexus 45.1634 14.5746 8.0000 83.0000 75.0000
- 19 43 7857 8112.8 Right-Lateral-Ventricle 16.8545 13.7719 0.0000 85.0000 85.0000
- 20 44 661 646.3 Right-Inf-Lat-Vent 25.5719 15.6661 0.0000 84.0000 84.0000
- 21 46 14282 14681.8 Right-Cerebellum-White-Matter 78.4139 7.8454 7.0000 105.0000 98.0000
- 22 47 69803 70068.1 Right-Cerebellum-Cortex 50.8947 11.7155 0.0000 97.0000 97.0000
- 23 49 7871 7601.7 Right-Thalamus-Proper 78.0973 11.0472 21.0000 108.0000 87.0000
- 24 50 4193 4107.5 Right-Caudate 62.1929 9.7509 29.0000 96.0000 67.0000
- 25 51 6221 6142.6 Right-Putamen 69.0939 8.2975 29.0000 98.0000 69.0000
- 26 52 1891 1784.4 Right-Pallidum 87.2771 6.4596 46.0000 107.0000 61.0000
- 27 53 4105 3981.7 Right-Hippocampus 56.3440 9.9095 2.0000 96.0000 94.0000
- 28 54 1717 1682.1 Right-Amygdala 55.9971 7.9506 27.0000 81.0000 54.0000
- 29 58 652 609.2 Right-Accumbens-area 58.5307 8.3030 34.0000 93.0000 59.0000
- 30 60 4154 4075.1 Right-VentralDC 84.6827 12.9071 16.0000 131.0000 115.0000
- 31 62 13 18.1 Right-vessel 48.4615 12.7319 24.0000 61.0000 37.0000
- 32 63 879 776.6 Right-choroid-plexus 44.3436 12.7306 16.0000 88.0000 72.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1096 964.8 WM-hypointensities 69.0547 14.8830 1.0000 102.0000 101.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 224 225.6 Optic-Chiasm 74.2946 21.7456 20.0000 117.0000 97.0000
- 41 251 759 725.3 CC_Posterior 101.9710 13.3815 38.0000 127.0000 89.0000
- 42 252 438 405.1 CC_Mid_Posterior 94.4931 18.6593 16.0000 120.0000 104.0000
- 43 253 642 603.8 CC_Central 95.9221 18.2353 8.0000 124.0000 116.0000
- 44 254 655 599.8 CC_Mid_Anterior 97.5343 18.0211 27.0000 124.0000 97.0000
- 45 255 964 939.5 CC_Anterior 108.1857 12.6320 40.0000 134.0000 94.0000
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