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0051201
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051201 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-961
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051201
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9104.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 217757.128506, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 221806.012362, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 439563.140868, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1640472.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1572354.253619, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 06:19:24 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 20:55:15 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 20:55:15 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2710     2708.9  wm-lh-bankssts                    96.6598     9.7770    64.0000   120.0000    56.0000 
    66. 

  66.   2 3002      3189     3136.3  wm-lh-caudalanteriorcingulate    100.7272    10.9526    49.0000   137.0000    88.0000 
    67. 

  67.   3 3003      6220     6323.9  wm-lh-caudalmiddlefrontal         95.7326    10.9238    62.0000   134.0000    72.0000 
    68. 

  68.   4 3005      2348     2312.0  wm-lh-cuneus                      96.3565    10.6888    64.0000   124.0000    60.0000 
    69. 

  69.   5 3006       555      618.8  wm-lh-entorhinal                  75.5297     8.0978    56.0000    96.0000    40.0000 
    70. 

  70.   6 3007      6253     6220.6  wm-lh-fusiform                    88.5122    10.8113    51.0000   120.0000    69.0000 
    71. 

  71.   7 3008     10330    10468.0  wm-lh-inferiorparietal           100.2509    11.5455    65.0000   135.0000    70.0000 
    72. 

  72.   8 3009      6138     6314.8  wm-lh-inferiortemporal            86.0953    12.1992    46.0000   117.0000    71.0000 
    73. 

  73.   9 3010      4609     4573.3  wm-lh-isthmuscingulate            97.6960    11.7245    14.0000   124.0000   110.0000 
    74. 

  74.  10 3011     10708    10966.7  wm-lh-lateraloccipital            93.6957    11.9577    61.0000   130.0000    69.0000 
    75. 

  75.  11 3012      6798     6762.7  wm-lh-lateralorbitofrontal        95.7595    13.0739    53.0000   129.0000    76.0000 
    76. 

  76.  12 3013      5721     5616.3  wm-lh-lingual                     88.1743    12.3251    33.0000   119.0000    86.0000 
    77. 

  77.  13 3014      3664     3668.3  wm-lh-medialorbitofrontal         95.3922    14.4187    34.0000   129.0000    95.0000 
    78. 

  78.  14 3015      5762     6005.3  wm-lh-middletemporal              87.1801    11.2527    50.0000   119.0000    69.0000 
    79. 

  79.  15 3016      1337     1399.8  wm-lh-parahippocampal             83.4331     9.9150    52.0000   113.0000    61.0000 
    80. 

  80.  16 3017      4232     4225.5  wm-lh-paracentral                 97.7512     9.4923    67.0000   126.0000    59.0000 
    81. 

  81.  17 3018      2343     2397.2  wm-lh-parsopercularis             97.6270    11.2892    66.0000   132.0000    66.0000 
    82. 

  82.  18 3019       798      807.6  wm-lh-parsorbitalis               91.2970    10.8176    67.0000   120.0000    53.0000 
    83. 

  83.  19 3020      2524     2601.5  wm-lh-parstriangularis            98.0305    11.0901    67.0000   133.0000    66.0000 
    84. 

  84.  20 3021      3466     3295.4  wm-lh-pericalcarine               93.6633    11.0635    62.0000   119.0000    57.0000 
    85. 

  85.  21 3022      6046     6321.2  wm-lh-postcentral                 93.7883    10.3936    55.0000   136.0000    81.0000 
    86. 

  86.  22 3023      5050     4944.4  wm-lh-posteriorcingulate          97.3590    10.3004    45.0000   121.0000    76.0000 
    87. 

  87.  23 3024     12457    12594.2  wm-lh-precentral                  96.3227    10.2731    60.0000   127.0000    67.0000 
    88. 

  88.  24 3025      9163     9046.1  wm-lh-precuneus                   99.3445    11.7642    38.0000   132.0000    94.0000 
    89. 

  89.  25 3026      2673     2632.3  wm-lh-rostralanteriorcingulate    96.6476    17.5046    32.0000   137.0000   105.0000 
    90. 

  90.  26 3027     11734    12079.2  wm-lh-rostralmiddlefrontal       100.1884    11.3100    62.0000   138.0000    76.0000 
    91. 

  91.  27 3028     16641    16920.6  wm-lh-superiorfrontal             94.7235    11.4157    58.0000   138.0000    80.0000 
    92. 

  92.  28 3029     10766    11003.7  wm-lh-superiorparietal           101.5948    10.4795    66.0000   136.0000    70.0000 
    93. 

  93.  29 3030      7007     7307.6  wm-lh-superiortemporal            89.1045    11.9491    57.0000   128.0000    71.0000 
    94. 

  94.  30 3031      8490     8739.2  wm-lh-supramarginal               97.7449    11.3517    65.0000   128.0000    63.0000 
    95. 

  95.  31 3032       272      291.8  wm-lh-frontalpole                 93.6728     9.9808    70.0000   127.0000    57.0000 
    96. 

  96.  32 3033       567      611.3  wm-lh-temporalpole                75.9383     9.0954    51.0000   101.0000    50.0000 
    97. 

  97.  33 3034       683      676.4  wm-lh-transversetemporal          89.9766     9.6252    66.0000   114.0000    48.0000 
    98. 

  98.  34 3035      9337     9358.5  wm-lh-insula                      88.1271    13.0246    35.0000   119.0000    84.0000 
    99. 

  99.  35 4001      3093     3057.3  wm-rh-bankssts                    99.2878     9.7155    68.0000   124.0000    56.0000 
    100. 

  100.  36 4002      2606     2618.5  wm-rh-caudalanteriorcingulate    104.9367    11.5472    48.0000   141.0000    93.0000 
    101. 

  101.  37 4003      4571     4609.9  wm-rh-caudalmiddlefrontal         96.6655    10.9804    58.0000   130.0000    72.0000 
    102. 

  102.  38 4005      2574     2596.8  wm-rh-cuneus                      88.1492     9.8703    61.0000   113.0000    52.0000 
    103. 

  103.  39 4006       516      547.8  wm-rh-entorhinal                  80.6124     8.6692    55.0000   109.0000    54.0000 
    104. 

  104.  40 4007      5707     5719.1  wm-rh-fusiform                    89.9315    10.8502    53.0000   120.0000    67.0000 
    105. 

  105.  41 4008      9913    10059.0  wm-rh-inferiorparietal            96.5332    10.9171    62.0000   128.0000    66.0000 
    106. 

  106.  42 4009      6614     6785.6  wm-rh-inferiortemporal            89.1166    11.7279    57.0000   119.0000    62.0000 
    107. 

  107.  43 4010      3568     3566.0  wm-rh-isthmuscingulate            97.0261    10.9236    31.0000   123.0000    92.0000 
    108. 

  108.  44 4011     10376    10569.6  wm-rh-lateraloccipital            85.4404    11.0032    55.0000   123.0000    68.0000 
    109. 

  109.  45 4012      6429     6389.3  wm-rh-lateralorbitofrontal        93.9944    13.6348    44.0000   127.0000    83.0000 
    110. 

  110.  46 4013      5851     5821.5  wm-rh-lingual                     85.4869    12.0773    34.0000   122.0000    88.0000 
    111. 

  111.  47 4014      3431     3468.4  wm-rh-medialorbitofrontal         95.7135    12.9187    42.0000   127.0000    85.0000 
    112. 

  112.  48 4015      7709     7942.6  wm-rh-middletemporal              90.7906    12.5995    51.0000   125.0000    74.0000 
    113. 

  113.  49 4016      1452     1519.2  wm-rh-parahippocampal             88.7218     9.7671    48.0000   116.0000    68.0000 
    114. 

  114.  50 4017      5106     5101.6  wm-rh-paracentral                 99.1257     8.7102    67.0000   128.0000    61.0000 
    115. 

  115.  51 4018      2832     2823.5  wm-rh-parsopercularis             93.2189    11.7302    54.0000   125.0000    71.0000 
    116. 

  116.  52 4019      1051     1076.4  wm-rh-parsorbitalis               90.8325    12.4274    63.0000   124.0000    61.0000 
    117. 

  117.  53 4020      3052     3084.0  wm-rh-parstriangularis            93.9509    12.0065    63.0000   126.0000    63.0000 
    118. 

  118.  54 4021      3407     3297.3  wm-rh-pericalcarine               84.7493     9.5732    55.0000   111.0000    56.0000 
    119. 

  119.  55 4022      6788     7037.3  wm-rh-postcentral                 96.8004    10.5923    63.0000   128.0000    65.0000 
    120. 

  120.  56 4023      4864     4811.6  wm-rh-posteriorcingulate          98.7866     9.8934    51.0000   123.0000    72.0000 
    121. 

  121.  57 4024     12923    13014.5  wm-rh-precentral                  97.9280    10.0108    61.0000   125.0000    64.0000 
    122. 

  122.  58 4025     10416    10341.6  wm-rh-precuneus                   94.8917    10.0742    40.0000   126.0000    86.0000 
    123. 

  123.  59 4026      2420     2409.2  wm-rh-rostralanteriorcingulate   106.1335    11.1806    64.0000   135.0000    71.0000 
    124. 

  124.  60 4027     13824    14265.6  wm-rh-rostralmiddlefrontal       100.2185    11.0438    63.0000   137.0000    74.0000 
    125. 

  125.  61 4028     16748    17150.8  wm-rh-superiorfrontal             98.3985    11.4265    54.0000   140.0000    86.0000 
    126. 

  126.  62 4029      9880    10100.5  wm-rh-superiorparietal            96.6550    10.4418    63.0000   129.0000    66.0000 
    127. 

  127.  63 4030      6767     7003.3  wm-rh-superiortemporal            92.8407    12.5365    54.0000   130.0000    76.0000 
    128. 

  128.  64 4031      9365     9507.6  wm-rh-supramarginal              102.4261    10.6067    64.0000   138.0000    74.0000 
    129. 

  129.  65 4032       293      306.1  wm-rh-frontalpole                 95.1126    12.5831    65.0000   125.0000    60.0000 
    130. 

  130.  66 4033       534      562.9  wm-rh-temporalpole                77.7959     8.9447    53.0000   110.0000    57.0000 
    131. 

  131.  67 4034       716      696.2  wm-rh-transversetemporal          95.2640    10.4278    68.0000   121.0000    53.0000 
    132. 

  132.  68 4035     10101    10121.5  wm-rh-insula                      88.1051    12.9362    23.0000   121.0000    98.0000 
    133. 

  133.  69 5001     25748    25617.6  Left-UnsegmentedWhiteMatter       98.2857    11.9617    16.0000   139.0000   123.0000 
    134. 

  134.  70 5002     24579    24355.6  Right-UnsegmentedWhiteMatter      98.9826    11.1401    14.0000   132.0000   118.0000 
    135.