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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051188
- # sysname Linux
- # hostname tars-535
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051188
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1013427.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1003491.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1003072.203319, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 6808.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 238169.193755, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 232110.923140, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 470280.116895, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 184112.583844, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 179844.502580, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 363957.086424, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 53045.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 617046.116895, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 897046.203319, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 890238.203319, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 887625.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1384759.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.817679, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.117286, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 103, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 73, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 176, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1239395.267823, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 02:37:32
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 19:53:33
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 19:53:33
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 2052 2380.6 Left-Lateral-Ventricle 45.1589 14.7404 9.0000 87.0000 78.0000
- 2 5 164 202.2 Left-Inf-Lat-Vent 46.2134 13.7532 18.0000 101.0000 83.0000
- 3 7 11105 11402.3 Left-Cerebellum-White-Matter 84.4555 8.2839 20.0000 108.0000 88.0000
- 4 8 49570 49867.9 Left-Cerebellum-Cortex 54.7911 11.3565 2.0000 122.0000 120.0000
- 5 10 7335 7032.5 Left-Thalamus-Proper 83.9097 8.6652 41.0000 109.0000 68.0000
- 6 11 3310 3363.0 Left-Caudate 74.1834 5.8702 48.0000 98.0000 50.0000
- 7 12 4365 4388.1 Left-Putamen 77.1585 5.8596 30.0000 98.0000 68.0000
- 8 13 2178 2031.8 Left-Pallidum 87.0845 7.7170 50.0000 105.0000 55.0000
- 9 14 652 661.7 3rd-Ventricle 45.6472 14.5131 12.0000 78.0000 66.0000
- 10 15 1710 1816.2 4th-Ventricle 27.4959 11.3832 0.0000 64.0000 64.0000
- 11 16 17108 17087.2 Brain-Stem 81.1303 10.8761 5.0000 120.0000 115.0000
- 12 17 3718 3615.7 Left-Hippocampus 65.9852 8.0846 31.0000 92.0000 61.0000
- 13 18 1244 1199.3 Left-Amygdala 62.3625 8.3101 30.0000 84.0000 54.0000
- 14 24 770 763.2 CSF 55.4351 11.6440 16.0000 82.0000 66.0000
- 15 26 570 582.5 Left-Accumbens-area 69.7825 4.5910 49.0000 83.0000 34.0000
- 16 28 3535 3365.6 Left-VentralDC 86.3123 11.2278 30.0000 112.0000 82.0000
- 17 30 46 59.8 Left-vessel 45.3696 14.0986 17.0000 69.0000 52.0000
- 18 31 223 207.0 Left-choroid-plexus 62.7040 10.4054 26.0000 87.0000 61.0000
- 19 43 3929 4156.8 Right-Lateral-Ventricle 39.4406 15.7444 2.0000 85.0000 83.0000
- 20 44 136 177.7 Right-Inf-Lat-Vent 37.4485 12.5844 6.0000 69.0000 63.0000
- 21 46 10903 11161.7 Right-Cerebellum-White-Matter 80.7912 8.6696 23.0000 116.0000 93.0000
- 22 47 42787 42775.9 Right-Cerebellum-Cortex 49.8704 12.0985 0.0000 117.0000 117.0000
- 23 49 7200 6997.5 Right-Thalamus-Proper 81.6204 8.4308 42.0000 101.0000 59.0000
- 24 50 3915 3893.3 Right-Caudate 73.2225 6.8076 38.0000 99.0000 61.0000
- 25 51 4877 4882.4 Right-Putamen 75.9530 6.6693 26.0000 96.0000 70.0000
- 26 52 2015 1843.0 Right-Pallidum 91.3514 5.8678 73.0000 111.0000 38.0000
- 27 53 3413 3278.0 Right-Hippocampus 62.6584 9.0193 26.0000 96.0000 70.0000
- 28 54 1216 1166.1 Right-Amygdala 61.7237 8.5515 24.0000 84.0000 60.0000
- 29 58 614 594.5 Right-Accumbens-area 70.8534 5.2613 54.0000 90.0000 36.0000
- 30 60 3593 3449.4 Right-VentralDC 84.1965 12.1584 29.0000 136.0000 107.0000
- 31 62 15 20.1 Right-vessel 54.0667 10.0176 34.0000 71.0000 37.0000
- 32 63 306 296.7 Right-choroid-plexus 56.2712 13.9204 20.0000 85.0000 65.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1128 1034.3 WM-hypointensities 74.2199 9.0428 50.0000 102.0000 52.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 138 150.0 Optic-Chiasm 66.1159 16.9318 29.0000 116.0000 87.0000
- 41 251 921 821.6 CC_Posterior 102.8176 17.2357 48.0000 127.0000 79.0000
- 42 252 582 510.6 CC_Mid_Posterior 97.1581 16.0314 50.0000 125.0000 75.0000
- 43 253 769 703.0 CC_Central 94.6580 17.0360 42.0000 126.0000 84.0000
- 44 254 627 537.0 CC_Mid_Anterior 94.5630 19.9058 34.0000 130.0000 96.0000
- 45 255 719 661.3 CC_Anterior 102.9152 16.8588 31.0000 129.0000 98.0000
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