| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887888889890891892893894895896897898899900901902903904905906907908909910911912913914915916917918919920921922923924925926927928929930931932933934935936937938939940941942943944945946947948949950951952953954955956957958959960961962963964965966967968969970971972973974975976977978979980981982983984985986987988989990991992993994995996997998999100010011002100310041005100610071008100910101011101210131014101510161017101810191020102110221023102410251026102710281029103010311032103310341035103610371038103910401041104210431044104510461047104810491050105110521053105410551056105710581059106010611062106310641065106610671068106910701071107210731074107510761077107810791080108110821083108410851086108710881089109010911092109310941095109610971098109911001101110211031104110511061107110811091110111111121113111411151116111711181119112011211122112311241125112611271128112911301131113211331134113511361137113811391140114111421143114411451146114711481149115011511152115311541155115611571158115911601161116211631164116511661167116811691170117111721173117411751176117711781179118011811182118311841185118611871188118911901191119211931194119511961197119811991200120112021203120412051206120712081209121012111212121312141215121612171218121912201221122212231224122512261227122812291230123112321233123412351236123712381239124012411242124312441245124612471248124912501251125212531254125512561257125812591260126112621263126412651266126712681269127012711272127312741275127612771278127912801281128212831284128512861287128812891290129112921293129412951296129712981299130013011302130313041305130613071308130913101311131213131314131513161317131813191320132113221323132413251326132713281329133013311332133313341335133613371338133913401341134213431344134513461347134813491350135113521353135413551356135713581359136013611362136313641365136613671368136913701371137213731374137513761377137813791380138113821383138413851386138713881389139013911392139313941395139613971398139914001401140214031404140514061407140814091410141114121413141414151416141714181419142014211422142314241425142614271428142914301431143214331434143514361437143814391440144114421443144414451446144714481449145014511452145314541455145614571458145914601461146214631464146514661467146814691470147114721473147414751476147714781479148014811482148314841485148614871488148914901491149214931494149514961497149814991500150115021503150415051506150715081509151015111512151315141515151615171518151915201521152215231524152515261527152815291530153115321533153415351536153715381539154015411542154315441545154615471548154915501551155215531554155515561557155815591560156115621563156415651566156715681569157015711572157315741575157615771578157915801581158215831584158515861587158815891590159115921593159415951596159715981599160016011602160316041605160616071608160916101611161216131614161516161617161816191620162116221623162416251626162716281629163016311632163316341635163616371638163916401641164216431644164516461647164816491650165116521653165416551656165716581659166016611662166316641665166616671668166916701671167216731674167516761677167816791680168116821683168416851686168716881689169016911692169316941695169616971698169917001701170217031704170517061707170817091710171117121713171417151716171717181719172017211722172317241725172617271728172917301731173217331734173517361737173817391740174117421743174417451746174717481749175017511752175317541755175617571758175917601761176217631764176517661767176817691770177117721773177417751776177717781779178017811782178317841785178617871788178917901791179217931794179517961797179817991800180118021803180418051806180718081809181018111812181318141815181618171818181918201821182218231824182518261827182818291830183118321833183418351836183718381839184018411842184318441845184618471848184918501851185218531854185518561857185818591860186118621863186418651866186718681869187018711872187318741875187618771878187918801881188218831884188518861887188818891890189118921893189418951896189718981899190019011902190319041905190619071908190919101911191219131914191519161917191819191920192119221923192419251926192719281929193019311932193319341935193619371938193919401941194219431944194519461947194819491950195119521953195419551956195719581959196019611962196319641965196619671968196919701971197219731974197519761977197819791980198119821983198419851986198719881989199019911992199319941995199619971998199920002001200220032004200520062007200820092010201120122013201420152016201720182019202020212022202320242025202620272028202920302031203220332034203520362037203820392040204120422043204420452046204720482049205020512052205320542055205620572058205920602061206220632064206520662067206820692070207120722073207420752076207720782079208020812082208320842085208620872088208920902091209220932094209520962097209820992100210121022103210421052106210721082109211021112112211321142115211621172118211921202121212221232124212521262127212821292130213121322133213421352136213721382139214021412142214321442145214621472148214921502151215221532154215521562157215821592160216121622163216421652166216721682169217021712172217321742175217621772178217921802181218221832184218521862187218821892190219121922193219421952196219721982199220022012202220322042205220622072208220922102211221222132214221522162217221822192220222122222223222422252226222722282229223022312232223322342235223622372238223922402241224222432244224522462247224822492250225122522253225422552256225722582259226022612262226322642265226622672268226922702271227222732274227522762277227822792280228122822283228422852286228722882289229022912292229322942295229622972298229923002301230223032304230523062307230823092310231123122313231423152316231723182319232023212322232323242325232623272328232923302331233223332334233523362337233823392340234123422343234423452346234723482349235023512352235323542355235623572358235923602361236223632364236523662367236823692370237123722373237423752376237723782379238023812382238323842385238623872388238923902391239223932394239523962397239823992400240124022403240424052406240724082409241024112412241324142415241624172418241924202421242224232424242524262427242824292430243124322433243424352436243724382439244024412442244324442445244624472448244924502451245224532454245524562457245824592460246124622463246424652466246724682469247024712472247324742475247624772478247924802481248224832484248524862487248824892490249124922493249424952496249724982499250025012502250325042505250625072508250925102511251225132514251525162517251825192520252125222523252425252526252725282529253025312532253325342535253625372538253925402541254225432544254525462547254825492550255125522553255425552556255725582559256025612562256325642565256625672568256925702571257225732574257525762577257825792580258125822583258425852586258725882589259025912592259325942595259625972598259926002601260226032604260526062607260826092610261126122613261426152616261726182619262026212622262326242625262626272628262926302631263226332634263526362637263826392640264126422643264426452646264726482649265026512652265326542655265626572658265926602661266226632664266526662667266826692670267126722673267426752676267726782679268026812682268326842685268626872688268926902691269226932694269526962697269826992700270127022703270427052706270727082709271027112712271327142715271627172718271927202721272227232724272527262727272827292730273127322733273427352736273727382739274027412742274327442745274627472748274927502751275227532754275527562757275827592760276127622763276427652766276727682769277027712772277327742775277627772778277927802781278227832784278527862787278827892790279127922793279427952796279727982799280028012802280328042805280628072808280928102811281228132814281528162817281828192820282128222823282428252826282728282829283028312832283328342835283628372838283928402841284228432844284528462847284828492850285128522853285428552856285728582859286028612862286328642865286628672868286928702871287228732874287528762877287828792880288128822883288428852886288728882889289028912892289328942895289628972898289929002901290229032904290529062907290829092910291129122913291429152916291729182919292029212922292329242925292629272928292929302931293229332934293529362937293829392940294129422943294429452946294729482949295029512952295329542955295629572958295929602961296229632964296529662967296829692970297129722973297429752976297729782979298029812982298329842985298629872988298929902991299229932994299529962997299829993000300130023003300430053006300730083009301030113012301330143015301630173018301930203021302230233024302530263027302830293030303130323033303430353036303730383039304030413042304330443045304630473048304930503051305230533054305530563057305830593060306130623063306430653066306730683069307030713072307330743075307630773078307930803081308230833084308530863087308830893090309130923093309430953096309730983099310031013102310331043105310631073108310931103111311231133114311531163117311831193120312131223123312431253126312731283129313031313132313331343135313631373138313931403141314231433144314531463147314831493150315131523153315431553156315731583159316031613162316331643165316631673168316931703171317231733174317531763177317831793180318131823183318431853186318731883189319031913192319331943195319631973198319932003201320232033204320532063207320832093210321132123213321432153216321732183219322032213222322332243225322632273228322932303231323232333234323532363237323832393240324132423243324432453246324732483249325032513252325332543255325632573258325932603261326232633264326532663267326832693270327132723273327432753276327732783279328032813282328332843285328632873288328932903291329232933294329532963297329832993300330133023303330433053306330733083309331033113312331333143315331633173318331933203321332233233324332533263327332833293330333133323333333433353336333733383339334033413342334333443345334633473348334933503351335233533354335533563357335833593360336133623363336433653366336733683369337033713372337333743375337633773378337933803381338233833384338533863387338833893390339133923393339433953396339733983399340034013402340334043405340634073408340934103411341234133414341534163417341834193420342134223423342434253426342734283429343034313432343334343435343634373438343934403441344234433444344534463447344834493450345134523453345434553456345734583459346034613462346334643465346634673468346934703471347234733474347534763477347834793480348134823483348434853486348734883489349034913492349334943495349634973498349935003501350235033504350535063507350835093510351135123513351435153516351735183519352035213522352335243525352635273528352935303531353235333534353535363537353835393540354135423543354435453546354735483549355035513552355335543555355635573558355935603561356235633564356535663567356835693570357135723573357435753576357735783579358035813582358335843585358635873588358935903591359235933594359535963597359835993600360136023603360436053606360736083609361036113612361336143615361636173618361936203621362236233624362536263627362836293630363136323633363436353636363736383639364036413642364336443645364636473648364936503651365236533654365536563657365836593660366136623663366436653666366736683669367036713672367336743675367636773678367936803681368236833684368536863687368836893690369136923693369436953696369736983699370037013702370337043705370637073708370937103711371237133714371537163717371837193720372137223723372437253726372737283729373037313732373337343735373637373738373937403741374237433744374537463747374837493750375137523753375437553756375737583759376037613762376337643765376637673768376937703771377237733774377537763777377837793780378137823783378437853786378737883789379037913792379337943795379637973798379938003801380238033804380538063807380838093810381138123813381438153816381738183819382038213822382338243825382638273828382938303831383238333834383538363837383838393840384138423843384438453846384738483849385038513852385338543855385638573858385938603861386238633864386538663867386838693870387138723873387438753876387738783879388038813882388338843885388638873888388938903891389238933894389538963897389838993900390139023903390439053906390739083909391039113912391339143915391639173918391939203921392239233924392539263927392839293930393139323933393439353936393739383939394039413942394339443945394639473948394939503951395239533954395539563957395839593960396139623963396439653966396739683969397039713972397339743975397639773978397939803981398239833984398539863987398839893990399139923993399439953996399739983999400040014002400340044005400640074008400940104011401240134014401540164017401840194020402140224023402440254026402740284029403040314032403340344035403640374038403940404041404240434044404540464047404840494050405140524053405440554056405740584059406040614062406340644065406640674068406940704071407240734074407540764077407840794080408140824083408440854086408740884089409040914092409340944095409640974098409941004101410241034104410541064107410841094110411141124113411441154116411741184119412041214122412341244125412641274128412941304131413241334134413541364137413841394140414141424143414441454146414741484149415041514152415341544155415641574158415941604161416241634164416541664167416841694170417141724173417441754176417741784179418041814182418341844185418641874188418941904191419241934194419541964197419841994200420142024203420442054206420742084209421042114212421342144215421642174218421942204221422242234224422542264227422842294230423142324233423442354236423742384239424042414242424342444245424642474248424942504251425242534254425542564257425842594260426142624263426442654266426742684269427042714272427342744275427642774278427942804281428242834284428542864287428842894290429142924293429442954296429742984299430043014302430343044305430643074308430943104311431243134314431543164317431843194320432143224323432443254326432743284329433043314332433343344335433643374338433943404341434243434344434543464347434843494350435143524353435443554356435743584359436043614362436343644365436643674368436943704371437243734374437543764377437843794380438143824383438443854386438743884389439043914392439343944395439643974398439944004401440244034404440544064407440844094410441144124413441444154416441744184419442044214422442344244425442644274428442944304431443244334434443544364437443844394440444144424443444444454446444744484449445044514452445344544455445644574458445944604461446244634464446544664467446844694470447144724473447444754476447744784479448044814482448344844485448644874488448944904491449244934494449544964497449844994500450145024503450445054506450745084509451045114512451345144515451645174518451945204521452245234524452545264527452845294530453145324533453445354536453745384539454045414542454345444545454645474548454945504551455245534554455545564557455845594560456145624563456445654566456745684569457045714572457345744575457645774578457945804581458245834584458545864587458845894590459145924593459445954596459745984599460046014602460346044605460646074608460946104611461246134614461546164617461846194620462146224623462446254626462746284629463046314632463346344635463646374638463946404641464246434644464546464647464846494650465146524653465446554656465746584659466046614662466346644665466646674668466946704671467246734674467546764677467846794680468146824683468446854686468746884689469046914692469346944695469646974698469947004701470247034704470547064707470847094710471147124713471447154716471747184719472047214722472347244725472647274728472947304731473247334734473547364737473847394740474147424743474447454746474747484749475047514752475347544755475647574758475947604761476247634764476547664767476847694770477147724773477447754776477747784779478047814782478347844785478647874788478947904791479247934794479547964797479847994800480148024803480448054806480748084809481048114812481348144815481648174818481948204821482248234824482548264827482848294830483148324833483448354836483748384839484048414842484348444845484648474848484948504851485248534854485548564857485848594860486148624863486448654866486748684869487048714872487348744875487648774878487948804881488248834884488548864887488848894890489148924893489448954896489748984899490049014902490349044905490649074908490949104911491249134914491549164917491849194920492149224923492449254926492749284929493049314932493349344935493649374938493949404941494249434944494549464947494849494950495149524953495449554956495749584959496049614962496349644965496649674968496949704971497249734974497549764977497849794980498149824983498449854986498749884989499049914992499349944995499649974998499950005001500250035004500550065007500850095010501150125013501450155016501750185019502050215022502350245025502650275028502950305031503250335034503550365037503850395040504150425043504450455046504750485049505050515052505350545055505650575058505950605061506250635064506550665067506850695070507150725073507450755076507750785079508050815082508350845085508650875088508950905091509250935094509550965097509850995100510151025103510451055106510751085109511051115112511351145115511651175118511951205121512251235124512551265127512851295130513151325133513451355136513751385139514051415142514351445145514651475148514951505151515251535154515551565157515851595160516151625163516451655166516751685169517051715172517351745175517651775178517951805181518251835184518551865187518851895190519151925193519451955196519751985199520052015202520352045205520652075208520952105211521252135214521552165217521852195220522152225223522452255226522752285229523052315232523352345235523652375238523952405241524252435244524552465247524852495250525152525253525452555256525752585259526052615262526352645265526652675268526952705271527252735274527552765277527852795280528152825283528452855286528752885289529052915292529352945295529652975298529953005301530253035304530553065307530853095310531153125313531453155316531753185319532053215322532353245325532653275328532953305331533253335334533553365337533853395340534153425343534453455346534753485349535053515352535353545355535653575358535953605361536253635364536553665367536853695370537153725373537453755376537753785379538053815382538353845385538653875388538953905391539253935394539553965397539853995400540154025403540454055406540754085409541054115412541354145415541654175418541954205421542254235424542554265427542854295430543154325433543454355436543754385439544054415442544354445445544654475448544954505451545254535454545554565457545854595460546154625463546454655466546754685469547054715472547354745475547654775478547954805481548254835484548554865487548854895490549154925493549454955496549754985499550055015502550355045505550655075508550955105511551255135514551555165517551855195520552155225523552455255526552755285529553055315532553355345535553655375538553955405541554255435544554555465547554855495550555155525553555455555556555755585559556055615562556355645565556655675568556955705571557255735574557555765577557855795580558155825583558455855586558755885589559055915592559355945595559655975598559956005601560256035604560556065607560856095610561156125613561456155616561756185619562056215622562356245625562656275628562956305631563256335634563556365637563856395640564156425643564456455646564756485649565056515652565356545655565656575658565956605661566256635664566556665667566856695670567156725673567456755676567756785679568056815682568356845685568656875688568956905691569256935694569556965697569856995700570157025703570457055706570757085709571057115712571357145715571657175718571957205721572257235724572557265727572857295730573157325733573457355736573757385739574057415742574357445745574657475748574957505751575257535754575557565757575857595760576157625763576457655766576757685769577057715772577357745775577657775778577957805781578257835784578557865787578857895790579157925793579457955796579757985799580058015802580358045805580658075808580958105811581258135814581558165817581858195820582158225823582458255826582758285829583058315832583358345835583658375838583958405841584258435844584558465847584858495850585158525853585458555856585758585859586058615862586358645865586658675868586958705871587258735874587558765877587858795880588158825883588458855886588758885889589058915892589358945895589658975898589959005901590259035904590559065907590859095910591159125913591459155916591759185919592059215922592359245925592659275928592959305931593259335934593559365937593859395940594159425943594459455946594759485949595059515952595359545955595659575958595959605961596259635964596559665967596859695970597159725973597459755976597759785979598059815982598359845985598659875988598959905991599259935994599559965997599859996000600160026003600460056006600760086009601060116012601360146015601660176018601960206021602260236024602560266027602860296030603160326033603460356036603760386039604060416042604360446045604660476048604960506051605260536054605560566057605860596060606160626063606460656066606760686069607060716072607360746075607660776078607960806081608260836084608560866087608860896090609160926093609460956096609760986099610061016102610361046105610661076108610961106111611261136114611561166117611861196120612161226123612461256126612761286129613061316132613361346135613661376138613961406141614261436144614561466147614861496150615161526153615461556156615761586159616061616162616361646165616661676168616961706171617261736174617561766177617861796180618161826183618461856186618761886189619061916192619361946195619661976198619962006201620262036204620562066207620862096210621162126213621462156216621762186219622062216222622362246225622662276228622962306231623262336234623562366237623862396240624162426243624462456246624762486249625062516252625362546255625662576258625962606261626262636264626562666267626862696270627162726273627462756276627762786279628062816282628362846285628662876288628962906291629262936294629562966297629862996300630163026303630463056306630763086309631063116312631363146315631663176318631963206321632263236324632563266327632863296330633163326333633463356336633763386339634063416342634363446345634663476348634963506351635263536354635563566357635863596360636163626363636463656366636763686369637063716372637363746375637663776378637963806381638263836384638563866387638863896390639163926393639463956396639763986399640064016402640364046405640664076408640964106411641264136414641564166417641864196420642164226423642464256426642764286429643064316432643364346435643664376438643964406441644264436444644564466447644864496450645164526453645464556456645764586459646064616462646364646465646664676468646964706471647264736474647564766477647864796480648164826483648464856486648764886489649064916492649364946495649664976498649965006501650265036504650565066507650865096510651165126513651465156516651765186519652065216522652365246525652665276528652965306531653265336534653565366537653865396540654165426543654465456546654765486549655065516552655365546555655665576558655965606561656265636564656565666567656865696570657165726573657465756576657765786579658065816582658365846585658665876588658965906591659265936594659565966597659865996600660166026603660466056606660766086609661066116612661366146615661666176618661966206621662266236624662566266627662866296630663166326633663466356636663766386639664066416642664366446645664666476648664966506651665266536654665566566657665866596660666166626663666466656666666766686669667066716672667366746675667666776678667966806681668266836684668566866687668866896690669166926693669466956696669766986699670067016702670367046705670667076708670967106711671267136714671567166717671867196720672167226723672467256726672767286729673067316732673367346735673667376738673967406741674267436744674567466747674867496750675167526753675467556756675767586759676067616762676367646765676667676768676967706771677267736774677567766777677867796780678167826783678467856786678767886789679067916792679367946795679667976798679968006801680268036804680568066807680868096810681168126813681468156816681768186819682068216822682368246825682668276828682968306831683268336834683568366837683868396840684168426843684468456846684768486849685068516852685368546855685668576858685968606861686268636864686568666867686868696870687168726873687468756876687768786879688068816882688368846885688668876888688968906891689268936894689568966897689868996900690169026903690469056906690769086909691069116912691369146915691669176918691969206921692269236924692569266927692869296930693169326933693469356936693769386939694069416942694369446945694669476948694969506951695269536954695569566957695869596960696169626963696469656966696769686969697069716972697369746975697669776978697969806981698269836984698569866987698869896990699169926993699469956996699769986999700070017002700370047005700670077008700970107011701270137014701570167017701870197020702170227023702470257026702770287029703070317032703370347035703670377038703970407041704270437044704570467047704870497050705170527053705470557056705770587059706070617062706370647065706670677068706970707071707270737074707570767077707870797080708170827083708470857086708770887089709070917092709370947095709670977098709971007101710271037104710571067107710871097110711171127113711471157116711771187119712071217122712371247125712671277128712971307131713271337134713571367137713871397140714171427143714471457146714771487149715071517152715371547155715671577158715971607161716271637164716571667167716871697170717171727173717471757176717771787179718071817182718371847185718671877188718971907191719271937194719571967197719871997200720172027203720472057206720772087209721072117212721372147215721672177218721972207221722272237224722572267227722872297230723172327233723472357236723772387239724072417242724372447245724672477248724972507251725272537254725572567257725872597260726172627263726472657266726772687269727072717272727372747275727672777278727972807281728272837284728572867287728872897290729172927293729472957296729772987299730073017302730373047305730673077308730973107311731273137314731573167317731873197320732173227323732473257326732773287329733073317332733373347335733673377338733973407341734273437344734573467347734873497350735173527353735473557356735773587359736073617362736373647365736673677368736973707371737273737374737573767377737873797380738173827383738473857386738773887389739073917392739373947395739673977398739974007401740274037404740574067407740874097410741174127413741474157416741774187419742074217422742374247425742674277428742974307431743274337434743574367437743874397440744174427443744474457446744774487449745074517452745374547455745674577458745974607461746274637464746574667467746874697470747174727473747474757476747774787479748074817482748374847485748674877488748974907491749274937494749574967497749874997500750175027503750475057506750775087509751075117512751375147515751675177518751975207521752275237524752575267527752875297530753175327533753475357536753775387539754075417542754375447545754675477548754975507551755275537554755575567557755875597560756175627563756475657566756775687569757075717572757375747575757675777578757975807581758275837584758575867587758875897590759175927593759475957596759775987599760076017602760376047605760676077608760976107611761276137614761576167617761876197620762176227623762476257626762776287629763076317632763376347635763676377638763976407641764276437644764576467647764876497650765176527653765476557656765776587659766076617662766376647665766676677668766976707671767276737674767576767677767876797680768176827683768476857686768776887689769076917692769376947695769676977698769977007701770277037704770577067707770877097710771177127713771477157716771777187719772077217722772377247725772677277728772977307731773277337734773577367737773877397740774177427743774477457746774777487749775077517752775377547755775677577758775977607761776277637764776577667767776877697770777177727773777477757776777777787779778077817782778377847785778677877788778977907791779277937794779577967797779877997800780178027803780478057806780778087809781078117812781378147815781678177818781978207821782278237824782578267827782878297830783178327833783478357836783778387839784078417842784378447845784678477848784978507851785278537854785578567857785878597860786178627863786478657866786778687869787078717872787378747875787678777878787978807881788278837884788578867887788878897890789178927893789478957896789778987899790079017902790379047905790679077908790979107911791279137914791579167917791879197920792179227923792479257926792779287929793079317932793379347935793679377938793979407941794279437944794579467947794879497950795179527953795479557956795779587959796079617962796379647965796679677968796979707971797279737974797579767977797879797980798179827983798479857986798779887989799079917992799379947995799679977998799980008001800280038004800580068007800880098010801180128013801480158016801780188019802080218022802380248025802680278028802980308031803280338034803580368037803880398040804180428043804480458046804780488049805080518052805380548055805680578058805980608061806280638064806580668067806880698070807180728073807480758076807780788079808080818082808380848085808680878088808980908091809280938094809580968097809880998100810181028103810481058106810781088109811081118112811381148115811681178118811981208121812281238124812581268127812881298130813181328133813481358136813781388139814081418142814381448145814681478148814981508151815281538154815581568157815881598160816181628163816481658166816781688169817081718172817381748175817681778178817981808181818281838184818581868187818881898190819181928193819481958196819781988199820082018202820382048205820682078208820982108211821282138214821582168217821882198220822182228223822482258226822782288229823082318232823382348235823682378238823982408241824282438244824582468247824882498250825182528253825482558256825782588259826082618262826382648265826682678268826982708271827282738274827582768277827882798280828182828283828482858286828782888289829082918292829382948295829682978298829983008301830283038304830583068307830883098310831183128313831483158316831783188319832083218322832383248325832683278328832983308331833283338334833583368337833883398340834183428343834483458346834783488349835083518352835383548355835683578358835983608361836283638364836583668367836883698370837183728373837483758376837783788379838083818382838383848385838683878388838983908391839283938394839583968397839883998400840184028403840484058406840784088409841084118412841384148415841684178418841984208421842284238424842584268427842884298430843184328433843484358436843784388439844084418442844384448445844684478448844984508451845284538454845584568457845884598460846184628463846484658466846784688469847084718472847384748475847684778478847984808481848284838484848584868487848884898490849184928493849484958496849784988499850085018502850385048505850685078508850985108511851285138514851585168517851885198520852185228523852485258526852785288529853085318532853385348535853685378538853985408541854285438544854585468547854885498550855185528553855485558556855785588559856085618562856385648565856685678568856985708571857285738574857585768577857885798580858185828583858485858586858785888589859085918592859385948595859685978598859986008601860286038604860586068607860886098610861186128613861486158616861786188619862086218622862386248625862686278628862986308631863286338634863586368637863886398640864186428643864486458646864786488649865086518652865386548655865686578658865986608661866286638664866586668667866886698670867186728673867486758676867786788679868086818682868386848685868686878688868986908691869286938694869586968697869886998700870187028703870487058706870787088709871087118712871387148715871687178718871987208721872287238724872587268727872887298730873187328733873487358736873787388739874087418742874387448745874687478748874987508751875287538754875587568757875887598760876187628763876487658766876787688769877087718772877387748775877687778778877987808781878287838784878587868787878887898790879187928793879487958796879787988799880088018802880388048805880688078808880988108811881288138814881588168817881888198820882188228823882488258826882788288829883088318832883388348835883688378838883988408841884288438844884588468847884888498850885188528853885488558856885788588859886088618862886388648865886688678868886988708871887288738874887588768877887888798880888188828883888488858886888788888889889088918892889388948895889688978898889989008901890289038904890589068907890889098910891189128913891489158916891789188919892089218922892389248925892689278928892989308931893289338934893589368937893889398940894189428943894489458946894789488949895089518952895389548955895689578958895989608961896289638964896589668967896889698970897189728973897489758976897789788979898089818982898389848985898689878988898989908991899289938994899589968997899889999000900190029003900490059006900790089009901090119012901390149015901690179018901990209021902290239024902590269027902890299030903190329033903490359036903790389039904090419042904390449045904690479048904990509051905290539054905590569057905890599060906190629063906490659066906790689069907090719072907390749075907690779078907990809081908290839084908590869087908890899090909190929093909490959096909790989099910091019102910391049105910691079108910991109111911291139114911591169117911891199120912191229123912491259126912791289129913091319132913391349135913691379138913991409141914291439144914591469147914891499150915191529153915491559156915791589159916091619162916391649165916691679168916991709171917291739174917591769177917891799180918191829183918491859186918791889189919091919192919391949195919691979198919992009201920292039204920592069207920892099210921192129213921492159216921792189219922092219222922392249225922692279228922992309231923292339234923592369237923892399240924192429243924492459246924792489249925092519252925392549255925692579258925992609261926292639264926592669267926892699270927192729273927492759276927792789279928092819282928392849285928692879288928992909291929292939294929592969297929892999300930193029303930493059306930793089309931093119312931393149315931693179318931993209321932293239324932593269327932893299330933193329333933493359336933793389339934093419342934393449345934693479348934993509351935293539354935593569357935893599360936193629363936493659366936793689369937093719372937393749375937693779378937993809381938293839384938593869387938893899390939193929393939493959396939793989399940094019402940394049405940694079408940994109411941294139414941594169417941894199420942194229423942494259426942794289429943094319432943394349435943694379438943994409441944294439444944594469447944894499450945194529453945494559456945794589459946094619462946394649465946694679468946994709471947294739474947594769477947894799480948194829483948494859486948794889489949094919492949394949495949694979498949995009501950295039504950595069507950895099510951195129513951495159516951795189519952095219522952395249525952695279528952995309531953295339534953595369537953895399540954195429543954495459546954795489549955095519552955395549555955695579558955995609561956295639564956595669567956895699570957195729573957495759576957795789579958095819582958395849585958695879588958995909591959295939594959595969597959895999600960196029603960496059606960796089609961096119612961396149615961696179618961996209621962296239624962596269627962896299630963196329633963496359636963796389639964096419642964396449645964696479648964996509651965296539654965596569657965896599660966196629663966496659666966796689669967096719672967396749675967696779678967996809681968296839684968596869687968896899690969196929693969496959696969796989699970097019702970397049705970697079708970997109711971297139714971597169717971897199720972197229723972497259726972797289729973097319732973397349735973697379738973997409741974297439744974597469747974897499750975197529753975497559756975797589759976097619762976397649765976697679768976997709771977297739774977597769777977897799780978197829783978497859786978797889789979097919792979397949795979697979798979998009801980298039804980598069807980898099810981198129813981498159816981798189819982098219822982398249825982698279828982998309831983298339834983598369837983898399840984198429843984498459846984798489849985098519852985398549855985698579858985998609861986298639864986598669867986898699870987198729873987498759876987798789879988098819882988398849885988698879888988998909891989298939894989598969897989898999900990199029903990499059906990799089909991099119912991399149915991699179918991999209921992299239924992599269927992899299930993199329933993499359936993799389939994099419942994399449945994699479948994999509951995299539954995599569957995899599960996199629963996499659966996799689969997099719972997399749975997699779978997999809981998299839984998599869987998899899990999199929993999499959996999799989999100001000110002100031000410005100061000710008100091001010011100121001310014100151001610017100181001910020100211002210023100241002510026100271002810029100301003110032100331003410035100361003710038100391004010041100421004310044100451004610047100481004910050100511005210053100541005510056100571005810059100601006110062100631006410065100661006710068100691007010071100721007310074100751007610077100781007910080100811008210083100841008510086100871008810089100901009110092100931009410095100961009710098100991010010101101021010310104101051010610107101081010910110101111011210113101141011510116101171011810119101201012110122101231012410125101261012710128101291013010131101321013310134101351013610137101381013910140101411014210143101441014510146101471014810149101501015110152101531015410155101561015710158101591016010161101621016310164101651016610167101681016910170101711017210173101741017510176101771017810179101801018110182101831018410185101861018710188101891019010191101921019310194101951019610197101981019910200102011020210203102041020510206102071020810209102101021110212102131021410215102161021710218102191022010221102221022310224102251022610227102281022910230102311023210233102341023510236102371023810239102401024110242102431024410245102461024710248102491025010251102521025310254102551025610257102581025910260102611026210263102641026510266102671026810269102701027110272102731027410275102761027710278102791028010281102821028310284102851028610287102881028910290102911029210293102941029510296102971029810299103001030110302103031030410305103061030710308103091031010311103121031310314103151031610317103181031910320103211032210323103241032510326103271032810329103301033110332103331033410335103361033710338103391034010341103421034310344103451034610347103481034910350103511035210353103541035510356103571035810359103601036110362103631036410365103661036710368103691037010371103721037310374103751037610377103781037910380103811038210383103841038510386103871038810389103901039110392103931039410395103961039710398103991040010401104021040310404104051040610407104081040910410104111041210413104141041510416104171041810419104201042110422104231042410425104261042710428104291043010431104321043310434104351043610437104381043910440104411044210443104441044510446104471044810449104501045110452104531045410455104561045710458104591046010461104621046310464104651046610467104681046910470104711047210473104741047510476104771047810479104801048110482104831048410485104861048710488104891049010491104921049310494104951049610497104981049910500105011050210503105041050510506105071050810509105101051110512105131051410515105161051710518105191052010521105221052310524105251052610527105281052910530105311053210533105341053510536105371053810539105401054110542105431054410545105461054710548105491055010551105521055310554105551055610557105581055910560105611056210563105641056510566105671056810569105701057110572105731057410575105761057710578105791058010581105821058310584105851058610587105881058910590105911059210593105941059510596105971059810599106001060110602106031060410605106061060710608106091061010611106121061310614106151061610617106181061910620106211062210623106241062510626106271062810629106301063110632106331063410635106361063710638106391064010641106421064310644106451064610647106481064910650106511065210653106541065510656106571065810659106601066110662106631066410665106661066710668106691067010671106721067310674106751067610677106781067910680106811068210683106841068510686106871068810689106901069110692106931069410695106961069710698106991070010701107021070310704107051070610707107081070910710107111071210713107141071510716107171071810719107201072110722107231072410725107261072710728107291073010731107321073310734107351073610737107381073910740107411074210743107441074510746107471074810749107501075110752107531075410755107561075710758107591076010761107621076310764107651076610767107681076910770107711077210773107741077510776107771077810779107801078110782107831078410785107861078710788107891079010791107921079310794107951079610797107981079910800108011080210803108041080510806108071080810809108101081110812108131081410815108161081710818108191082010821108221082310824108251082610827108281082910830108311083210833108341083510836108371083810839108401084110842108431084410845108461084710848108491085010851108521085310854108551085610857108581085910860108611086210863108641086510866108671086810869108701087110872108731087410875108761087710878108791088010881108821088310884108851088610887108881088910890108911089210893108941089510896108971089810899109001090110902109031090410905109061090710908109091091010911109121091310914109151091610917109181091910920109211092210923109241092510926109271092810929109301093110932109331093410935109361093710938109391094010941109421094310944109451094610947109481094910950109511095210953109541095510956109571095810959109601096110962109631096410965109661096710968109691097010971109721097310974109751097610977109781097910980109811098210983109841098510986109871098810989109901099110992109931099410995109961099710998109991100011001110021100311004110051100611007110081100911010110111101211013110141101511016110171101811019110201102111022110231102411025110261102711028110291103011031110321103311034110351103611037110381103911040110411104211043110441104511046110471104811049110501105111052110531105411055110561105711058110591106011061110621106311064110651106611067110681106911070110711107211073110741107511076110771107811079110801108111082110831108411085110861108711088110891109011091110921109311094110951109611097110981109911100111011110211103111041110511106111071110811109111101111111112111131111411115111161111711118111191112011121111221112311124111251112611127111281112911130111311113211133111341113511136111371113811139111401114111142111431114411145111461114711148111491115011151111521115311154111551115611157111581115911160111611116211163111641116511166111671116811169111701117111172111731117411175111761117711178111791118011181111821118311184111851118611187111881118911190111911119211193111941119511196111971119811199112001120111202112031120411205112061120711208112091121011211112121121311214112151121611217112181121911220112211122211223112241122511226112271122811229112301123111232112331123411235 |
- Sat Oct 7 19:18:39 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/recon-all
- -subjid 0051180 -sd fs-6.0.0 -i /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Stanford_3/0051180/session_1/anat_1/mprage.nii.gz -autorecon-all -parallel -openmp 2
- subjid 0051180
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Actual FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- Linux tars-970 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- cputime unlimited
- filesize unlimited
- datasize unlimited
- stacksize 10240 kbytes
- coredumpsize 0 kbytes
- memoryuse 10485760 kbytes
- vmemoryuse unlimited
- descriptors 65536
- memorylocked 64 kbytes
- maxproc 1024
- total used free shared buffers cached
- Mem: 66074800 49202500 16872300 1755428 0 45505132
- -/+ buffers/cache: 3697368 62377432
- Swap: 0 0 0
- ########################################
- program versions used
- $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $
- $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $
- mri_convert.bin -all-info
- ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- FLIRT version 5.5
- $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $
- mri_convert.bin --version
- stable6
- ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:39-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
- ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
- ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-17:18:40-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: ntraut Machine: tars-970 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- #######################################
- GCADIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCA RB_all_2016-05-10.vc700.gca
- GCASkull RB_all_withskull_2016-05-10.vc700.gca
- AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
- GCSDIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
- #######################################
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Stanford_3/0051180/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig/001.mgz
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Stanford_3/0051180/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig/001.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Stanford_3/0051180/session_1/anat_1/mprage.nii.gz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -0, 0)
- j_ras = (-0, 1, 0)
- k_ras = (-0, -0, 1)
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig/001.mgz...
- #--------------------------------------------
- #@# MotionCor Sat Oct 7 19:18:42 CEST 2017
- Found 1 runs
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig/001.mgz
- Checking for (invalid) multi-frame inputs...
- WARNING: only one run found. This is OK, but motion
- correction cannot be performed on one run, so I'll
- copy the run to rawavg and continue.
- cp /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig/001.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz --conform
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -0, 0)
- j_ras = (-0, 1, 0)
- k_ras = (-0, -0, 1)
- changing data type from short to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- Reslicing using trilinear interpolation
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz...
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/transforms/talairach.xfm /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Talairach Sat Oct 7 19:18:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- nIters 1
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-970 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 19:18:51 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.27088
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.27088/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.27088/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.27088/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 19:18:54 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.27088/nu0.mnc ./tmp.mri_nu_correct.mni.27088/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.27088/0/ -iterations 1000 -distance 50
- [ntraut@tars-970:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/] [2017-10-07 19:18:54] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.27088/0/ ./tmp.mri_nu_correct.mni.27088/nu0.mnc ./tmp.mri_nu_correct.mni.27088/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 49
- CV of field change: 0.000985148
-
-
-
- mri_convert ./tmp.mri_nu_correct.mni.27088/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- mri_convert.bin ./tmp.mri_nu_correct.mni.27088/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.27088/nu1.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- INFO: transform src into the like-volume: orig.mgz
- changing data type from float to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- writing to orig_nu.mgz...
-
-
- Sat Oct 7 19:20:08 CEST 2017
- mri_nu_correct.mni done
- talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm
- talairach_avi log file is transforms/talairach_avi.log...
- Started at Sat Oct 7 19:20:08 CEST 2017
- Ended at Sat Oct 7 19:20:48 CEST 2017
- talairach_avi done
- cp transforms/talairach.auto.xfm transforms/talairach.xfm
- #--------------------------------------------
- #@# Talairach Failure Detection Sat Oct 7 19:20:50 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- talairach_afd -T 0.005 -xfm transforms/talairach.xfm
- talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.7184, pval=0.4932 >= threshold=0.0050)
- awk -f /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/extract_talairach_avi_QA.awk /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/transforms/talairach_avi.log
- tal_QC_AZS /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/transforms/talairach_avi.log
- TalAviQA: 0.97025
- z-score: -1
- #--------------------------------------------
- #@# Nu Intensity Correction Sat Oct 7 19:20:50 CEST 2017
- mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- nIters 2
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-970 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 19:20:50 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.27988
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.27988/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.27988/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.27988/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 19:20:53 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.27988/nu0.mnc ./tmp.mri_nu_correct.mni.27988/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.27988/0/
- [ntraut@tars-970:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/] [2017-10-07 19:20:53] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.27988/0/ ./tmp.mri_nu_correct.mni.27988/nu0.mnc ./tmp.mri_nu_correct.mni.27988/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 11
- CV of field change: 0.000991128
-
-
- --------------------------------------------------------
- Iteration 2 Sat Oct 7 19:21:28 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.27988/nu1.mnc ./tmp.mri_nu_correct.mni.27988/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.27988/1/
- [ntraut@tars-970:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/] [2017-10-07 19:21:28] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.27988/1/ ./tmp.mri_nu_correct.mni.27988/nu1.mnc ./tmp.mri_nu_correct.mni.27988/nu2.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 13
- CV of field change: 0.000958255
-
-
-
- mri_binarize --i ./tmp.mri_nu_correct.mni.27988/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.27988/ones.mgz
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.27988/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.27988/ones.mgz
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- input ./tmp.mri_nu_correct.mni.27988/nu2.mnc
- frame 0
- nErode3d 0
- nErode2d 0
- output ./tmp.mri_nu_correct.mni.27988/ones.mgz
- Binarizing based on threshold
- min -1
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Found 16777216 values in range
- Counting number of voxels in first frame
- Found 16777216 voxels in final mask
- Count: 16777216 16777216.000000 16777216 100.000000
- mri_binarize done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27988/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.27988/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27988/input.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27988/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.27988/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27988/input.mean.dat
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.27988/ones.mgz
- Loading orig.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.27988/input.mean.dat
- mri_segstats done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27988/ones.mgz --i ./tmp.mri_nu_correct.mni.27988/nu2.mnc --sum ./tmp.mri_nu_correct.mni.27988/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27988/output.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.27988/ones.mgz --i ./tmp.mri_nu_correct.mni.27988/nu2.mnc --sum ./tmp.mri_nu_correct.mni.27988/sum.junk --avgwf ./tmp.mri_nu_correct.mni.27988/output.mean.dat
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.27988/ones.mgz
- Loading ./tmp.mri_nu_correct.mni.27988/nu2.mnc
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.27988/output.mean.dat
- mri_segstats done
- mris_calc -o ./tmp.mri_nu_correct.mni.27988/nu2.mnc ./tmp.mri_nu_correct.mni.27988/nu2.mnc mul 1.06361271185534998212
- Saving result to './tmp.mri_nu_correct.mni.27988/nu2.mnc' (type = MINC ) [ ok ]
- mri_convert ./tmp.mri_nu_correct.mni.27988/nu2.mnc nu.mgz --like orig.mgz
- mri_convert.bin ./tmp.mri_nu_correct.mni.27988/nu2.mnc nu.mgz --like orig.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.27988/nu2.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- INFO: transform src into the like-volume: orig.mgz
- writing to nu.mgz...
- mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz
- type change took 0 minutes and 8 seconds.
- mapping (10, 105) to ( 3, 110)
-
-
- Sat Oct 7 19:22:40 CEST 2017
- mri_nu_correct.mni done
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/transforms/talairach.xfm nu.mgz nu.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Intensity Normalization Sat Oct 7 19:22:41 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_normalize -g 1 -mprage nu.mgz T1.mgz
- using max gradient = 1.000
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- reading from nu.mgz...
- normalizing image...
- talairach transform
- 1.14823 -0.13679 0.02953 2.22054;
- 0.13464 1.01791 0.17197 -13.47662;
- -0.09606 -0.16103 1.24357 7.85031;
- 0.00000 0.00000 0.00000 1.00000;
- processing without aseg, no1d=0
- MRInormInit():
- INFO: Modifying talairach volume c_(r,a,s) based on average_305
- MRInormalize():
- MRIsplineNormalize(): npeaks = 6
- Starting OpenSpline(): npoints = 6
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 109
- gm peak at 87 (87), valley at 85 (85)
- csf peak at 35, setting threshold to 69
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 77 (77), valley at 14 (14)
- csf peak at 19, setting threshold to 57
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to T1.mgz
- 3D bias adjustment took 1 minutes and 57 seconds.
- #--------------------------------------------
- #@# Skull Stripping Sat Oct 7 19:24:39 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta
- aligning to atlas containing skull, setting unknown_nbr_spacing = 5
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach_with_skull.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca'...
- average std = 22.9 using min determinant for regularization = 52.6
- 0 singular and 9002 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 8.7 or > 569.1
- total sample mean = 77.6 (1399 zeros)
- ************************************************
- spacing=8, using 3243 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 3243, passno 0, spacing 8
- resetting wm mean[0]: 100 --> 108
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=10.0
- skull bounding box = (52, 48, 30) --> (207, 188, 229)
- using (104, 95, 130) as brain centroid...
- mean wm in atlas = 108, using box (85,78,105) --> (123, 112,154) to find MRI wm
- before smoothing, mri peak at 105
- robust fit to distribution - 104 +- 8.0
- after smoothing, mri peak at 104, scaling input intensities by 1.038
- scaling channel 0 by 1.03846
- initial log_p = -4.696
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.678523 @ (0.000, 0.000, 0.000)
- max log p = -4.537907 @ (4.545, 4.545, -13.636)
- max log p = -4.513958 @ (-2.273, -2.273, 2.273)
- max log p = -4.501806 @ (-1.136, -3.409, -5.682)
- max log p = -4.501067 @ (1.705, 2.841, 2.841)
- max log p = -4.501067 @ (0.000, 0.000, 0.000)
- Found translation: (2.8, 1.7, -14.2): log p = -4.501
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.976, old_max_log_p =-4.501 (thresh=-4.5)
- 1.14016 0.00000 0.15011 -40.54593;
- 0.00000 1.23625 0.00000 -31.48141;
- -0.13885 0.00000 1.05465 -4.09857;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.940, old_max_log_p =-3.976 (thresh=-4.0)
- 1.14016 0.00000 0.15011 -40.54593;
- -0.01948 1.31760 0.14798 -51.54787;
- -0.13766 -0.16136 1.04563 19.55206;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 2 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.940, old_max_log_p =-3.940 (thresh=-3.9)
- 1.14016 0.00000 0.15011 -40.54593;
- -0.01948 1.31760 0.14798 -51.54787;
- -0.13766 -0.16136 1.04563 19.55206;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.862, old_max_log_p =-3.940 (thresh=-3.9)
- 1.15723 0.08801 0.16022 -54.24335;
- -0.09145 1.34276 0.10801 -42.47937;
- -0.13558 -0.11257 1.02985 14.55309;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 4 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.862, old_max_log_p =-3.862 (thresh=-3.9)
- 1.15723 0.08801 0.16022 -54.24335;
- -0.09145 1.34276 0.10801 -42.47937;
- -0.13558 -0.11257 1.02985 14.55309;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 5 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.849, old_max_log_p =-3.862 (thresh=-3.9)
- 1.16265 0.06626 0.15899 -51.81760;
- -0.07234 1.34088 0.11036 -45.88325;
- -0.13542 -0.11244 1.02865 14.66603;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 6 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.844, old_max_log_p =-3.849 (thresh=-3.8)
- 1.16674 0.06649 0.15955 -52.43926;
- -0.07208 1.33616 0.10997 -45.22263;
- -0.13542 -0.11244 1.02865 14.66603;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 7 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.837, old_max_log_p =-3.844 (thresh=-3.8)
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13526 -0.11231 1.02744 14.77910;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 8 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.836, old_max_log_p =-3.837 (thresh=-3.8)
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 3243 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 3243
- Quasinewton: input matrix
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 011: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.836 (old=-4.696)
- transform before final EM align:
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 364799 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 364799
- Quasinewton: input matrix
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 013: -log(p) = 4.2 tol 0.000000
- final transform:
- 1.16951 0.08866 0.16190 -56.11622;
- -0.09095 1.33177 0.10710 -41.39526;
- -0.13542 -0.11244 1.02864 14.66644;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach_with_skull.lta...
- mri_em_register utimesec 1518.637132
- mri_em_register stimesec 1.322798
- mri_em_register ru_maxrss 609824
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 157612
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 24
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 184
- mri_em_register ru_nivcsw 4831
- registration took 13 minutes and 5 seconds.
- mri_watershed -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mri_watershed.dat -T1 -brain_atlas /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz
- Mode: T1 normalized volume
- Mode: Use the information of atlas (default parms, --help for details)
- *********************************************************
- The input file is T1.mgz
- The output file is brainmask.auto.mgz
- Weighting the input with atlas information before watershed
- *************************WATERSHED**************************
- Sorting...
- first estimation of the COG coord: x=130 y=110 z=128 r=66
- first estimation of the main basin volume: 1241345 voxels
- Looking for seedpoints
- 2 found in the cerebellum
- 11 found in the rest of the brain
- global maximum in x=107, y=100, z=108, Imax=255
- CSF=21, WM_intensity=110, WM_VARIANCE=5
- WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110
- preflooding height equal to 10 percent
- done.
- Analyze...
- main basin size=6268834947 voxels, voxel volume =1.000
- = 6268834947 mmm3 = 6268834.816 cm3
- done.
- PostAnalyze...Basin Prior
- 124 basins merged thanks to atlas
- ***** 0 basin(s) merged in 1 iteration(s)
- ***** 0 voxel(s) added to the main basin
- done.
- Weighting the input with prior template
- ****************TEMPLATE DEFORMATION****************
- second estimation of the COG coord: x=129,y=119, z=119, r=9962 iterations
- ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^
- GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=26 , nb = 45763
- RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = -1034094603
- LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = -1056457603
- RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=27 , nb = -1069062607
- LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=37 , nb = 1076959114
- OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=23 , nb = 1065486122
-
- CSF_MAX TRANSITION GM_MIN GM
- GLOBAL
- before analyzing : 26, 22, 20, 41
- after analyzing : 22, 24, 25, 28
- RIGHT_CER
- before analyzing : 4, 57, 84, 85
- after analyzing : 4, 75, 84, 77
- LEFT_CER
- before analyzing : 4, 6, 22, 33
- after analyzing : 4, 18, 25, 21
- RIGHT_BRAIN
- before analyzing : 27, 22, 19, 41
- after analyzing : 22, 24, 25, 28
- LEFT_BRAIN
- before analyzing : 37, 26, 20, 41
- after analyzing : 17, 26, 26, 29
- OTHER
- before analyzing : 23, 25, 31, 88
- after analyzing : 23, 29, 31, 43
- mri_strip_skull: done peeling brain
- highly tesselated surface with 10242 vertices
- matching...73 iterations
- *********************VALIDATION*********************
- curvature mean = -0.013, std = 0.010
- curvature mean = 69.263, std = 9.248
- No Rigid alignment: -atlas Mode Off (basic atlas / no registration)
- before rotation: sse = 4.22, sigma = 9.06
- after rotation: sse = 4.22, sigma = 9.06
- Localization of inacurate regions: Erosion-Dilation steps
- the sse mean is 4.58, its var is 8.70
- before Erosion-Dilatation 2.39% of inacurate vertices
- after Erosion-Dilatation 3.63% of inacurate vertices
- Validation of the shape of the surface done.
- Scaling of atlas fields onto current surface fields
- ********FINAL ITERATIVE TEMPLATE DEFORMATION********
- Compute Local values csf/gray
- Fine Segmentation...40 iterations
- mri_strip_skull: done peeling brain
- Brain Size = 1579504 voxels, voxel volume = 1.000 mm3
- = 1579504 mmm3 = 1579.504 cm3
- ******************************
- Saving brainmask.auto.mgz
- done
- mri_watershed utimesec 24.056342
- mri_watershed stimesec 0.379942
- mri_watershed ru_maxrss 818272
- mri_watershed ru_ixrss 0
- mri_watershed ru_idrss 0
- mri_watershed ru_isrss 0
- mri_watershed ru_minflt 211595
- mri_watershed ru_majflt 0
- mri_watershed ru_nswap 0
- mri_watershed ru_inblock 4720
- mri_watershed ru_oublock 2688
- mri_watershed ru_msgsnd 0
- mri_watershed ru_msgrcv 0
- mri_watershed ru_nsignals 0
- mri_watershed ru_nvcsw 1292
- mri_watershed ru_nivcsw 105
- mri_watershed done
- cp brainmask.auto.mgz brainmask.mgz
- #-------------------------------------
- #@# EM Registration Sat Oct 7 19:38:07 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta
- setting unknown_nbr_spacing = 3
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 841 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 6.3 or > 503.7
- total sample mean = 78.8 (1011 zeros)
- ************************************************
- spacing=8, using 2830 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 2830, passno 0, spacing 8
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=14.0
- skull bounding box = (65, 63, 40) --> (197, 170, 216)
- using (109, 99, 128) as brain centroid...
- mean wm in atlas = 107, using box (93,86,106) --> (125, 112,149) to find MRI wm
- before smoothing, mri peak at 105
- robust fit to distribution - 105 +- 7.8
- after smoothing, mri peak at 105, scaling input intensities by 1.019
- scaling channel 0 by 1.01905
- initial log_p = -4.388
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.344105 @ (-9.091, -9.091, -9.091)
- max log p = -4.168775 @ (4.545, 4.545, -4.545)
- max log p = -4.099877 @ (2.273, 2.273, -2.273)
- max log p = -4.089109 @ (1.136, 3.409, 1.136)
- max log p = -4.085618 @ (0.568, -0.568, -1.705)
- max log p = -4.085618 @ (0.000, 0.000, 0.000)
- Found translation: (-0.6, 0.6, -16.5): log p = -4.086
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.873, old_max_log_p =-4.086 (thresh=-4.1)
- 1.21519 0.13910 0.15624 -71.02607;
- -0.15998 1.21794 0.12096 -19.68638;
- -0.13885 -0.13766 0.90924 36.10740;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.867, old_max_log_p =-3.873 (thresh=-3.9)
- 1.12405 0.12867 0.14452 -56.19383;
- -0.12995 1.13357 0.00115 0.20815;
- -0.17043 0.02418 0.98604 4.54423;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 2 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.867, old_max_log_p =-3.867 (thresh=-3.9)
- 1.12405 0.12867 0.14452 -56.19383;
- -0.12995 1.13357 0.00115 0.20815;
- -0.17043 0.02418 0.98604 4.54423;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.682, old_max_log_p =-3.867 (thresh=-3.9)
- 1.10951 0.05362 0.13308 -41.88977;
- -0.07513 1.17895 0.11217 -26.26460;
- -0.15455 -0.08546 0.98165 19.89253;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 4 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.682, old_max_log_p =-3.682 (thresh=-3.7)
- 1.10951 0.05362 0.13308 -41.88977;
- -0.07513 1.17895 0.11217 -26.26460;
- -0.15455 -0.08546 0.98165 19.89253;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 5 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.665, old_max_log_p =-3.682 (thresh=-3.7)
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09801 1.17177 0.14144 -26.78225;
- -0.16995 -0.12470 0.97401 27.56196;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 6 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.665, old_max_log_p =-3.665 (thresh=-3.7)
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 2830 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 2830
- Quasinewton: input matrix
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.665 (old=-4.388)
- transform before final EM align:
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 315557 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 315557
- Quasinewton: input matrix
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 011: -log(p) = 4.1 tol 0.000000
- final transform:
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach.lta...
- mri_em_register utimesec 1072.707923
- mri_em_register stimesec 1.133827
- mri_em_register ru_maxrss 599052
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 158958
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 24
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 187
- mri_em_register ru_nivcsw 6715
- registration took 9 minutes and 17 seconds.
- #--------------------------------------
- #@# CA Normalize Sat Oct 7 19:47:24 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz
- writing control point volume to ctrl_pts.mgz
- using MR volume brainmask.mgz to mask input volume...
- reading 1 input volume
- reading atlas from '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- reading transform from 'transforms/talairach.lta'...
- reading input volume from nu.mgz...
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=14.0
- skull bounding box = (65, 63, 40) --> (197, 170, 216)
- using (109, 99, 128) as brain centroid...
- mean wm in atlas = 107, using box (93,86,106) --> (125, 112,149) to find MRI wm
- before smoothing, mri peak at 105
- robust fit to distribution - 105 +- 7.8
- after smoothing, mri peak at 105, scaling input intensities by 1.019
- scaling channel 0 by 1.01905
- using 246344 sample points...
- INFO: compute sample coordinates transform
- 1.10931 0.07106 0.15193 -45.25931;
- -0.09651 1.17138 0.13331 -25.96976;
- -0.17054 -0.11498 0.97399 26.46218;
- 0.00000 0.00000 0.00000 1.00000;
- INFO: transform used
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (124, 65, 42) --> (190, 165, 209)
- Left_Cerebral_White_Matter: limiting intensities to 92.0 --> 128.0
- 4 of 789 (0.5%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (73, 65, 37) --> (137, 162, 206)
- Right_Cerebral_White_Matter: limiting intensities to 91.0 --> 132.0
- 0 of 659 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (133, 141, 67) --> (175, 179, 122)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 7 of 7 (100.0%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (92, 141, 60) --> (134, 175, 118)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 5 of 8 (62.5%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (114, 130, 100) --> (145, 191, 132)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 0 of 8 (0.0%) samples deleted
- using 1471 total control points for intensity normalization...
- bias field = 0.968 +- 0.050
- 1 of 1455 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (124, 65, 42) --> (190, 165, 209)
- Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 126.0
- 11 of 858 (1.3%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (73, 65, 37) --> (137, 162, 206)
- Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 15 of 728 (2.1%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (133, 141, 67) --> (175, 179, 122)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 57 of 72 (79.2%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (92, 141, 60) --> (134, 175, 118)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 75 of 79 (94.9%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (114, 130, 100) --> (145, 191, 132)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 36 of 87 (41.4%) samples deleted
- using 1824 total control points for intensity normalization...
- bias field = 0.984 +- 0.061
- 0 of 1619 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (124, 65, 42) --> (190, 165, 209)
- Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 10 of 1004 (1.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (73, 65, 37) --> (137, 162, 206)
- Right_Cerebral_White_Matter: limiting intensities to 117.0 --> 132.0
- 812 of 928 (87.5%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (133, 141, 67) --> (175, 179, 122)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 62 of 87 (71.3%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (92, 141, 60) --> (134, 175, 118)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 41 of 44 (93.2%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (114, 130, 100) --> (145, 191, 132)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 70 of 144 (48.6%) samples deleted
- using 2207 total control points for intensity normalization...
- bias field = 0.955 +- 0.068
- 0 of 1195 control points discarded
- writing normalized volume to norm.mgz...
- writing control points to ctrl_pts.mgz
- freeing GCA...done.
- normalization took 1 minutes and 44 seconds.
- #--------------------------------------
- #@# CA Reg Sat Oct 7 19:49:09 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_ca_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z
- not handling expanded ventricles...
- using previously computed transform transforms/talairach.lta
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -regularize_mean 0.500
- -regularize 0.500
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_ca_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading input volume 'norm.mgz'...
- reading GCA '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- label assignment complete, 0 changed (0.00%)
- det(m_affine) = 1.32 (predicted orig area = 6.1)
- label assignment complete, 0 changed (0.00%)
- freeing gibbs priors...done.
- average std[0] = 5.0
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.039
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.928, neg=0, invalid=762
- 0001: dt=162.301370, rms=0.847 (8.733%), neg=0, invalid=762
- 0002: dt=258.217323, rms=0.837 (1.200%), neg=0, invalid=762
- 0003: dt=517.888000, rms=0.814 (2.812%), neg=0, invalid=762
- 0004: dt=145.454545, rms=0.810 (0.501%), neg=0, invalid=762
- 0005: dt=517.888000, rms=0.802 (0.931%), neg=0, invalid=762
- 0006: dt=221.952000, rms=0.796 (0.687%), neg=0, invalid=762
- 0007: dt=129.472000, rms=0.795 (0.207%), neg=0, invalid=762
- 0008: dt=129.472000, rms=0.793 (0.213%), neg=0, invalid=762
- 0009: dt=129.472000, rms=0.790 (0.361%), neg=0, invalid=762
- 0010: dt=129.472000, rms=0.787 (0.447%), neg=0, invalid=762
- 0011: dt=129.472000, rms=0.783 (0.522%), neg=0, invalid=762
- 0012: dt=129.472000, rms=0.778 (0.581%), neg=0, invalid=762
- 0013: dt=129.472000, rms=0.774 (0.568%), neg=0, invalid=762
- 0014: dt=129.472000, rms=0.770 (0.524%), neg=0, invalid=762
- 0015: dt=129.472000, rms=0.766 (0.483%), neg=0, invalid=762
- 0016: dt=129.472000, rms=0.762 (0.455%), neg=0, invalid=762
- 0017: dt=129.472000, rms=0.759 (0.430%), neg=0, invalid=762
- 0018: dt=129.472000, rms=0.756 (0.372%), neg=0, invalid=762
- 0019: dt=129.472000, rms=0.754 (0.321%), neg=0, invalid=762
- 0020: dt=129.472000, rms=0.752 (0.279%), neg=0, invalid=762
- 0021: dt=129.472000, rms=0.750 (0.277%), neg=0, invalid=762
- 0022: dt=129.472000, rms=0.748 (0.290%), neg=0, invalid=762
- 0023: dt=129.472000, rms=0.745 (0.295%), neg=0, invalid=762
- 0024: dt=129.472000, rms=0.743 (0.298%), neg=0, invalid=762
- 0025: dt=129.472000, rms=0.741 (0.293%), neg=0, invalid=762
- 0026: dt=129.472000, rms=0.739 (0.283%), neg=0, invalid=762
- 0027: dt=129.472000, rms=0.737 (0.292%), neg=0, invalid=762
- 0028: dt=129.472000, rms=0.735 (0.278%), neg=0, invalid=762
- 0029: dt=129.472000, rms=0.733 (0.253%), neg=0, invalid=762
- 0030: dt=129.472000, rms=0.731 (0.223%), neg=0, invalid=762
- 0031: dt=129.472000, rms=0.730 (0.201%), neg=0, invalid=762
- 0032: dt=129.472000, rms=0.728 (0.195%), neg=0, invalid=762
- 0033: dt=129.472000, rms=0.727 (0.188%), neg=0, invalid=762
- 0034: dt=129.472000, rms=0.726 (0.172%), neg=0, invalid=762
- 0035: dt=129.472000, rms=0.725 (0.136%), neg=0, invalid=762
- 0036: dt=129.472000, rms=0.724 (0.111%), neg=0, invalid=762
- 0037: dt=129.472000, rms=0.723 (0.098%), neg=0, invalid=762
- 0038: dt=1479.680000, rms=0.722 (0.162%), neg=0, invalid=762
- 0039: dt=32.368000, rms=0.722 (0.009%), neg=0, invalid=762
- 0040: dt=32.368000, rms=0.722 (0.006%), neg=0, invalid=762
- 0041: dt=32.368000, rms=0.722 (-0.002%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.723, neg=0, invalid=762
- 0042: dt=129.472000, rms=0.721 (0.283%), neg=0, invalid=762
- 0043: dt=369.920000, rms=0.720 (0.098%), neg=0, invalid=762
- 0044: dt=369.920000, rms=0.720 (0.055%), neg=0, invalid=762
- 0045: dt=369.920000, rms=0.720 (-0.006%), neg=0, invalid=762
- setting smoothness coefficient to 0.154
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.733, neg=0, invalid=762
- 0046: dt=181.841270, rms=0.724 (1.204%), neg=0, invalid=762
- 0047: dt=185.971944, rms=0.708 (2.156%), neg=0, invalid=762
- 0048: dt=63.589744, rms=0.704 (0.589%), neg=0, invalid=762
- 0049: dt=414.720000, rms=0.696 (1.166%), neg=0, invalid=762
- 0050: dt=70.624125, rms=0.688 (1.118%), neg=0, invalid=762
- 0051: dt=62.208000, rms=0.687 (0.136%), neg=0, invalid=762
- 0052: dt=62.208000, rms=0.686 (0.254%), neg=0, invalid=762
- 0053: dt=62.208000, rms=0.683 (0.342%), neg=0, invalid=762
- 0054: dt=62.208000, rms=0.680 (0.417%), neg=0, invalid=762
- 0055: dt=62.208000, rms=0.677 (0.462%), neg=0, invalid=762
- 0056: dt=62.208000, rms=0.673 (0.562%), neg=0, invalid=762
- 0057: dt=62.208000, rms=0.669 (0.594%), neg=0, invalid=762
- 0058: dt=62.208000, rms=0.666 (0.542%), neg=0, invalid=762
- 0059: dt=62.208000, rms=0.663 (0.461%), neg=0, invalid=762
- 0060: dt=62.208000, rms=0.660 (0.400%), neg=0, invalid=762
- 0061: dt=62.208000, rms=0.658 (0.391%), neg=0, invalid=762
- 0062: dt=62.208000, rms=0.655 (0.334%), neg=0, invalid=762
- 0063: dt=62.208000, rms=0.654 (0.257%), neg=0, invalid=762
- 0064: dt=62.208000, rms=0.652 (0.210%), neg=0, invalid=762
- 0065: dt=62.208000, rms=0.651 (0.204%), neg=0, invalid=762
- 0066: dt=62.208000, rms=0.650 (0.220%), neg=0, invalid=762
- 0067: dt=62.208000, rms=0.648 (0.197%), neg=0, invalid=762
- 0068: dt=62.208000, rms=0.647 (0.161%), neg=0, invalid=762
- 0069: dt=62.208000, rms=0.646 (0.147%), neg=0, invalid=762
- 0070: dt=62.208000, rms=0.645 (0.151%), neg=0, invalid=762
- 0071: dt=62.208000, rms=0.644 (0.136%), neg=0, invalid=762
- 0072: dt=62.208000, rms=0.644 (0.114%), neg=0, invalid=762
- 0073: dt=62.208000, rms=0.643 (0.093%), neg=0, invalid=762
- 0074: dt=497.664000, rms=0.642 (0.114%), neg=0, invalid=762
- 0075: dt=25.920000, rms=0.642 (0.001%), neg=0, invalid=762
- 0076: dt=25.920000, rms=0.642 (0.003%), neg=0, invalid=762
- 0077: dt=25.920000, rms=0.642 (-0.011%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.643, neg=0, invalid=762
- 0078: dt=36.288000, rms=0.642 (0.252%), neg=0, invalid=762
- 0079: dt=9.072000, rms=0.642 (0.006%), neg=0, invalid=762
- 0080: dt=9.072000, rms=0.642 (-0.002%), neg=0, invalid=762
- setting smoothness coefficient to 0.588
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.686, neg=0, invalid=762
- 0081: dt=1.200000, rms=0.685 (0.149%), neg=0, invalid=762
- 0082: dt=0.600000, rms=0.685 (0.001%), neg=0, invalid=762
- 0083: dt=0.600000, rms=0.685 (0.000%), neg=0, invalid=762
- 0084: dt=0.600000, rms=0.685 (-0.003%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.686, neg=0, invalid=762
- 0085: dt=1.600000, rms=0.685 (0.150%), neg=0, invalid=762
- 0086: dt=0.400000, rms=0.685 (0.001%), neg=0, invalid=762
- 0087: dt=0.400000, rms=0.685 (0.000%), neg=0, invalid=762
- 0088: dt=0.400000, rms=0.685 (-0.002%), neg=0, invalid=762
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.802, neg=0, invalid=762
- 0089: dt=6.484412, rms=0.768 (4.255%), neg=0, invalid=762
- 0090: dt=7.694600, rms=0.760 (0.960%), neg=0, invalid=762
- 0091: dt=1.008000, rms=0.760 (0.006%), neg=0, invalid=762
- 0092: dt=1.008000, rms=0.760 (0.004%), neg=0, invalid=762
- 0093: dt=1.008000, rms=0.760 (-0.004%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.761, neg=0, invalid=762
- 0094: dt=0.000000, rms=0.760 (0.091%), neg=0, invalid=762
- 0095: dt=0.000000, rms=0.760 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 5.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.843, neg=0, invalid=762
- 0096: dt=0.028000, rms=0.842 (0.074%), neg=0, invalid=762
- 0097: dt=0.016000, rms=0.842 (-0.001%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.843, neg=0, invalid=762
- 0098: dt=0.320000, rms=0.842 (0.112%), neg=0, invalid=762
- 0099: dt=0.384000, rms=0.842 (0.029%), neg=0, invalid=762
- 0100: dt=0.384000, rms=0.841 (0.048%), neg=0, invalid=762
- 0101: dt=0.384000, rms=0.841 (0.055%), neg=0, invalid=762
- 0102: dt=0.384000, rms=0.840 (0.048%), neg=0, invalid=762
- 0103: dt=0.384000, rms=0.840 (0.070%), neg=0, invalid=762
- 0104: dt=0.384000, rms=0.839 (0.114%), neg=0, invalid=762
- 0105: dt=0.384000, rms=0.838 (0.136%), neg=0, invalid=762
- 0106: dt=0.384000, rms=0.837 (0.082%), neg=0, invalid=762
- 0107: dt=0.384000, rms=0.837 (-0.003%), neg=0, invalid=762
- 0108: dt=4.096000, rms=0.831 (0.666%), neg=0, invalid=762
- 0109: dt=1.792000, rms=0.825 (0.783%), neg=0, invalid=762
- 0110: dt=0.016000, rms=0.825 (0.000%), neg=0, invalid=762
- 0111: dt=0.016000, rms=0.825 (-0.000%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 10.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.773, neg=0, invalid=762
- 0112: dt=0.945552, rms=0.751 (2.825%), neg=0, invalid=762
- 0113: dt=0.096000, rms=0.750 (0.187%), neg=0, invalid=762
- 0114: dt=0.096000, rms=0.750 (-0.069%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.751, neg=0, invalid=762
- 0115: dt=0.048000, rms=0.750 (0.117%), neg=0, invalid=762
- 0116: dt=0.005000, rms=0.750 (0.000%), neg=0, invalid=762
- 0117: dt=0.005000, rms=0.750 (-0.000%), neg=0, invalid=762
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.10027 (20)
- mri peak = 0.14394 (20)
- Left_Lateral_Ventricle (4): linear fit = 1.10 x + 0.0 (1518 voxels, overlap=0.760)
- Left_Lateral_Ventricle (4): linear fit = 1.10 x + 0.0 (1518 voxels, peak = 22), gca=21.9
- gca peak = 0.15565 (16)
- mri peak = 0.11391 (23)
- Right_Lateral_Ventricle (43): linear fit = 1.36 x + 0.0 (923 voxels, overlap=0.487)
- Right_Lateral_Ventricle (43): linear fit = 1.36 x + 0.0 (923 voxels, peak = 22), gca=21.7
- gca peak = 0.26829 (96)
- mri peak = 0.10025 (86)
- Right_Pallidum (52): linear fit = 0.90 x + 0.0 (794 voxels, overlap=0.290)
- Right_Pallidum (52): linear fit = 0.90 x + 0.0 (794 voxels, peak = 87), gca=86.9
- gca peak = 0.20183 (93)
- mri peak = 0.07882 (93)
- Left_Pallidum (13): linear fit = 0.95 x + 0.0 (666 voxels, overlap=0.762)
- Left_Pallidum (13): linear fit = 0.95 x + 0.0 (666 voxels, peak = 89), gca=88.8
- gca peak = 0.21683 (55)
- mri peak = 0.17066 (51)
- Right_Hippocampus: unreasonable value (49.8/51.0), not in range [50, 90] - rejecting
- gca peak = 0.30730 (58)
- mri peak = 0.08223 (50)
- Left_Hippocampus (17): linear fit = 0.92 x + 0.0 (652 voxels, overlap=1.000)
- Left_Hippocampus (17): linear fit = 0.92 x + 0.0 (652 voxels, peak = 53), gca=53.1
- gca peak = 0.11430 (101)
- mri peak = 0.06293 (101)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43468 voxels, overlap=0.936)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43468 voxels, peak = 102), gca=101.5
- gca peak = 0.12076 (102)
- mri peak = 0.05966 (111)
- Left_Cerebral_White_Matter (2): linear fit = 1.10 x + 0.0 (46925 voxels, overlap=0.510)
- Left_Cerebral_White_Matter (2): linear fit = 1.10 x + 0.0 (46925 voxels, peak = 112), gca=111.7
- gca peak = 0.14995 (59)
- mri peak = 0.04910 (44)
- Left_Cerebral_Cortex (3): linear fit = 0.76 x + 0.0 (22786 voxels, overlap=0.257)
- Left_Cerebral_Cortex (3): linear fit = 0.76 x + 0.0 (22786 voxels, peak = 45), gca=45.1
- gca peak = 0.15082 (58)
- mri peak = 0.04964 (40)
- Right_Cerebral_Cortex (42): linear fit = 0.75 x + 0.0 (23008 voxels, overlap=0.602)
- Right_Cerebral_Cortex (42): linear fit = 0.75 x + 0.0 (23008 voxels, peak = 43), gca=43.2
- gca peak = 0.14161 (67)
- mri peak = 0.07421 (71)
- Right_Caudate (50): linear fit = 1.07 x + 0.0 (503 voxels, overlap=0.950)
- Right_Caudate (50): linear fit = 1.07 x + 0.0 (503 voxels, peak = 71), gca=71.4
- gca peak = 0.15243 (71)
- mri peak = 0.12236 (71)
- Left_Caudate (11): linear fit = 0.94 x + 0.0 (692 voxels, overlap=0.747)
- Left_Caudate (11): linear fit = 0.94 x + 0.0 (692 voxels, peak = 67), gca=67.1
- gca peak = 0.13336 (57)
- mri peak = 0.03228 (29)
- Left_Cerebellum_Cortex (8): linear fit = 0.50 x + 0.0 (20879 voxels, overlap=0.001)
- Left_Cerebellum_Cortex (8): linear fit = 0.50 x + 0.0 (20879 voxels, peak = 29), gca=28.8
- gca peak = 0.13252 (56)
- mri peak = 0.03667 (25)
- Right_Cerebellum_Cortex (47): linear fit = 0.57 x + 0.0 (23831 voxels, overlap=0.001)
- Right_Cerebellum_Cortex (47): linear fit = 0.57 x + 0.0 (23831 voxels, peak = 32), gca=32.2
- gca peak = 0.18181 (84)
- mri peak = 0.03514 (81)
- Left_Cerebellum_White_Matter (7): linear fit = 0.96 x + 0.0 (6460 voxels, overlap=0.979)
- Left_Cerebellum_White_Matter (7): linear fit = 0.96 x + 0.0 (6460 voxels, peak = 81), gca=81.1
- gca peak = 0.20573 (83)
- mri peak = 0.03537 (79)
- Right_Cerebellum_White_Matter (46): linear fit = 0.93 x + 0.0 (5766 voxels, overlap=0.320)
- Right_Cerebellum_White_Matter (46): linear fit = 0.93 x + 0.0 (5766 voxels, peak = 77), gca=76.8
- gca peak = 0.21969 (57)
- mri peak = 0.11765 (54)
- Left_Amygdala (18): linear fit = 0.94 x + 0.0 (262 voxels, overlap=0.854)
- Left_Amygdala (18): linear fit = 0.94 x + 0.0 (262 voxels, peak = 53), gca=53.3
- gca peak = 0.39313 (56)
- mri peak = 0.20690 (50)
- Right_Amygdala: unreasonable value (49.0/50.0), not in range [50, 90] - rejecting
- gca peak = 0.14181 (85)
- mri peak = 0.04805 (88)
- Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (4777 voxels, overlap=0.911)
- Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (4777 voxels, peak = 91), gca=90.5
- gca peak = 0.11978 (83)
- mri peak = 0.06716 (77)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3718 voxels, overlap=0.926)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (3718 voxels, peak = 83), gca=82.6
- gca peak = 0.13399 (79)
- mri peak = 0.06915 (73)
- Left_Putamen (12): linear fit = 0.94 x + 0.0 (1939 voxels, overlap=0.752)
- Left_Putamen (12): linear fit = 0.94 x + 0.0 (1939 voxels, peak = 74), gca=73.9
- gca peak = 0.14159 (79)
- mri peak = 0.09210 (68)
- Right_Putamen (51): linear fit = 0.88 x + 0.0 (1766 voxels, overlap=0.094)
- Right_Putamen (51): linear fit = 0.88 x + 0.0 (1766 voxels, peak = 69), gca=69.1
- gca peak = 0.10025 (80)
- mri peak = 0.06660 (90)
- Brain_Stem (16): linear fit = 1.10 x + 0.0 (9139 voxels, overlap=0.403)
- Brain_Stem (16): linear fit = 1.10 x + 0.0 (9139 voxels, peak = 88), gca=87.6
- gca peak = 0.13281 (86)
- mri peak = 0.06298 (100)
- Right_VentralDC (60): linear fit = 1.14 x + 0.0 (733 voxels, overlap=0.430)
- Right_VentralDC (60): linear fit = 1.14 x + 0.0 (733 voxels, peak = 98), gca=98.5
- gca peak = 0.12801 (89)
- mri peak = 0.05514 (96)
- Left_VentralDC (28): linear fit = 1.09 x + 0.0 (909 voxels, overlap=0.854)
- Left_VentralDC (28): linear fit = 1.09 x + 0.0 (909 voxels, peak = 97), gca=96.6
- gca peak = 0.20494 (23)
- uniform distribution in MR - rejecting arbitrary fit
- gca peak = 0.15061 (21)
- mri peak = 0.12774 (11)
- Fourth_Ventricle (15): linear fit = 0.47 x + 0.0 (217 voxels, overlap=0.020)
- Fourth_Ventricle (15): linear fit = 0.47 x + 0.0 (217 voxels, peak = 10), gca=10.0
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.18056 (32)
- gca peak Left_Cerebellum_Cortex = 0.13336 (57)
- gca peak Left_Thalamus = 0.64095 (94)
- gca peak Third_Ventricle = 0.20494 (23)
- gca peak Fourth_Ventricle = 0.15061 (21)
- gca peak CSF = 0.20999 (34)
- gca peak Left_Accumbens_area = 0.39030 (62)
- gca peak Left_undetermined = 0.95280 (25)
- gca peak Left_vessel = 0.67734 (53)
- gca peak Left_choroid_plexus = 0.09433 (44)
- gca peak Right_Inf_Lat_Vent = 0.23544 (26)
- gca peak Right_Cerebellum_Cortex = 0.13252 (56)
- gca peak Right_Hippocampus = 0.21683 (55)
- gca peak Right_Amygdala = 0.39313 (56)
- gca peak Right_Accumbens_area = 0.30312 (64)
- gca peak Right_vessel = 0.46315 (51)
- gca peak Right_choroid_plexus = 0.14086 (44)
- gca peak Fifth_Ventricle = 0.51669 (36)
- gca peak WM_hypointensities = 0.09722 (76)
- gca peak non_WM_hypointensities = 0.11899 (47)
- gca peak Optic_Chiasm = 0.39033 (72)
- label assignment complete, 0 changed (0.00%)
- not using caudate to estimate GM means
- setting label Right_Hippocampus based on Left_Hippocampus = 0.92 x + 0: 53
- setting label Right_Amygdala based on Left_Amygdala = 0.94 x + 0: 53
- estimating mean gm scale to be 0.87 x + 0.0
- estimating mean wm scale to be 1.05 x + 0.0
- estimating mean csf scale to be 1.23 x + 0.0
- setting left cbm cortex = 0.87 x + 0.00
- setting right cbm cortex = 0.87 x + 0.00
- saving intensity scales to talairach.label_intensities.txt
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.776, neg=0, invalid=762
- 0118: dt=110.976000, rms=0.771 (0.671%), neg=0, invalid=762
- 0119: dt=295.936000, rms=0.767 (0.467%), neg=0, invalid=762
- 0120: dt=73.984000, rms=0.766 (0.121%), neg=0, invalid=762
- 0121: dt=517.888000, rms=0.762 (0.552%), neg=0, invalid=762
- 0122: dt=129.472000, rms=0.761 (0.123%), neg=0, invalid=762
- 0123: dt=517.888000, rms=0.759 (0.255%), neg=0, invalid=762
- 0124: dt=73.984000, rms=0.758 (0.126%), neg=0, invalid=762
- 0125: dt=517.888000, rms=0.757 (0.235%), neg=0, invalid=762
- 0126: dt=110.976000, rms=0.755 (0.153%), neg=0, invalid=762
- 0127: dt=129.472000, rms=0.755 (0.045%), neg=0, invalid=762
- 0128: dt=129.472000, rms=0.755 (0.068%), neg=0, invalid=762
- 0129: dt=129.472000, rms=0.754 (0.119%), neg=0, invalid=762
- 0130: dt=129.472000, rms=0.753 (0.147%), neg=0, invalid=762
- 0131: dt=129.472000, rms=0.751 (0.165%), neg=0, invalid=762
- 0132: dt=129.472000, rms=0.750 (0.199%), neg=0, invalid=762
- 0133: dt=129.472000, rms=0.748 (0.209%), neg=0, invalid=762
- 0134: dt=129.472000, rms=0.747 (0.206%), neg=0, invalid=762
- 0135: dt=129.472000, rms=0.745 (0.193%), neg=0, invalid=762
- 0136: dt=129.472000, rms=0.744 (0.195%), neg=0, invalid=762
- 0137: dt=129.472000, rms=0.742 (0.193%), neg=0, invalid=762
- 0138: dt=129.472000, rms=0.741 (0.186%), neg=0, invalid=762
- 0139: dt=129.472000, rms=0.740 (0.175%), neg=0, invalid=762
- 0140: dt=129.472000, rms=0.738 (0.160%), neg=0, invalid=762
- 0141: dt=129.472000, rms=0.737 (0.159%), neg=0, invalid=762
- 0142: dt=129.472000, rms=0.736 (0.163%), neg=0, invalid=762
- 0143: dt=129.472000, rms=0.735 (0.159%), neg=0, invalid=762
- 0144: dt=129.472000, rms=0.734 (0.154%), neg=0, invalid=762
- 0145: dt=129.472000, rms=0.733 (0.145%), neg=0, invalid=762
- 0146: dt=129.472000, rms=0.732 (0.144%), neg=0, invalid=762
- 0147: dt=129.472000, rms=0.731 (0.138%), neg=0, invalid=762
- 0148: dt=129.472000, rms=0.730 (0.129%), neg=0, invalid=762
- 0149: dt=129.472000, rms=0.729 (0.118%), neg=0, invalid=762
- 0150: dt=129.472000, rms=0.728 (0.110%), neg=0, invalid=762
- 0151: dt=129.472000, rms=0.727 (0.116%), neg=0, invalid=762
- 0152: dt=129.472000, rms=0.726 (0.110%), neg=0, invalid=762
- 0153: dt=129.472000, rms=0.726 (0.099%), neg=0, invalid=762
- 0154: dt=129.472000, rms=0.725 (0.090%), neg=0, invalid=762
- 0155: dt=129.472000, rms=0.724 (0.086%), neg=0, invalid=762
- 0156: dt=129.472000, rms=0.724 (0.085%), neg=0, invalid=762
- 0157: dt=129.472000, rms=0.723 (0.083%), neg=0, invalid=762
- 0158: dt=129.472000, rms=0.723 (0.077%), neg=0, invalid=762
- 0159: dt=129.472000, rms=0.722 (0.073%), neg=0, invalid=762
- 0160: dt=129.472000, rms=0.722 (0.070%), neg=0, invalid=762
- 0161: dt=129.472000, rms=0.721 (0.068%), neg=0, invalid=762
- 0162: dt=129.472000, rms=0.721 (0.065%), neg=0, invalid=762
- 0163: dt=129.472000, rms=0.720 (0.062%), neg=0, invalid=762
- 0164: dt=129.472000, rms=0.720 (0.062%), neg=0, invalid=762
- 0165: dt=129.472000, rms=0.719 (0.061%), neg=0, invalid=762
- 0166: dt=129.472000, rms=0.719 (0.062%), neg=0, invalid=762
- 0167: dt=129.472000, rms=0.718 (0.056%), neg=0, invalid=762
- 0168: dt=129.472000, rms=0.718 (0.052%), neg=0, invalid=762
- 0169: dt=129.472000, rms=0.718 (0.049%), neg=0, invalid=762
- 0170: dt=129.472000, rms=0.717 (0.049%), neg=0, invalid=762
- 0171: dt=129.472000, rms=0.717 (0.050%), neg=0, invalid=762
- 0172: dt=129.472000, rms=0.717 (0.048%), neg=0, invalid=762
- 0173: dt=129.472000, rms=0.716 (0.045%), neg=0, invalid=762
- 0174: dt=129.472000, rms=0.716 (0.040%), neg=0, invalid=762
- 0175: dt=129.472000, rms=0.716 (0.040%), neg=0, invalid=762
- 0176: dt=129.472000, rms=0.716 (0.041%), neg=0, invalid=762
- 0177: dt=129.472000, rms=0.715 (0.044%), neg=0, invalid=762
- 0178: dt=129.472000, rms=0.715 (0.039%), neg=0, invalid=762
- 0179: dt=129.472000, rms=0.715 (0.035%), neg=0, invalid=762
- 0180: dt=129.472000, rms=0.714 (0.033%), neg=0, invalid=762
- 0181: dt=129.472000, rms=0.714 (0.031%), neg=0, invalid=762
- 0182: dt=129.472000, rms=0.714 (0.033%), neg=0, invalid=762
- 0183: dt=129.472000, rms=0.714 (0.034%), neg=0, invalid=762
- 0184: dt=129.472000, rms=0.713 (0.034%), neg=0, invalid=762
- 0185: dt=129.472000, rms=0.713 (0.031%), neg=0, invalid=762
- 0186: dt=129.472000, rms=0.713 (0.025%), neg=0, invalid=762
- 0187: dt=129.472000, rms=0.713 (0.023%), neg=0, invalid=762
- 0188: dt=4734.976000, rms=0.712 (0.164%), neg=0, invalid=762
- 0189: dt=32.368000, rms=0.712 (0.010%), neg=0, invalid=762
- 0190: dt=32.368000, rms=0.712 (-0.005%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.713, neg=0, invalid=762
- 0191: dt=92.480000, rms=0.711 (0.218%), neg=0, invalid=762
- 0192: dt=517.888000, rms=0.710 (0.148%), neg=0, invalid=762
- 0193: dt=129.472000, rms=0.710 (0.049%), neg=0, invalid=762
- 0194: dt=129.472000, rms=0.710 (0.024%), neg=0, invalid=762
- 0195: dt=129.472000, rms=0.709 (0.031%), neg=0, invalid=762
- 0196: dt=129.472000, rms=0.709 (0.026%), neg=0, invalid=762
- 0197: dt=129.472000, rms=0.709 (0.034%), neg=0, invalid=762
- 0198: dt=129.472000, rms=0.709 (0.036%), neg=0, invalid=762
- 0199: dt=129.472000, rms=0.709 (0.028%), neg=0, invalid=762
- 0200: dt=129.472000, rms=0.708 (0.020%), neg=0, invalid=762
- 0201: dt=129.472000, rms=0.708 (0.021%), neg=0, invalid=762
- 0202: dt=129.472000, rms=0.708 (0.022%), neg=0, invalid=762
- 0203: dt=129.472000, rms=0.708 (0.022%), neg=0, invalid=762
- 0204: dt=517.888000, rms=0.708 (0.009%), neg=0, invalid=762
- 0205: dt=517.888000, rms=0.708 (0.030%), neg=0, invalid=762
- 0206: dt=517.888000, rms=0.708 (-0.105%), neg=0, invalid=762
- 0207: dt=0.000000, rms=0.708 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.711, neg=0, invalid=762
- 0208: dt=207.360000, rms=0.704 (1.004%), neg=0, invalid=762
- 0209: dt=164.858639, rms=0.694 (1.365%), neg=0, invalid=762
- 0210: dt=56.358209, rms=0.692 (0.413%), neg=0, invalid=762
- 0211: dt=331.776000, rms=0.687 (0.626%), neg=0, invalid=762
- 0212: dt=69.012048, rms=0.682 (0.767%), neg=0, invalid=762
- 0213: dt=64.512000, rms=0.680 (0.265%), neg=0, invalid=762
- 0214: dt=145.152000, rms=0.678 (0.305%), neg=0, invalid=762
- 0215: dt=36.288000, rms=0.677 (0.198%), neg=0, invalid=762
- 0216: dt=331.776000, rms=0.674 (0.471%), neg=0, invalid=762
- 0217: dt=64.711111, rms=0.671 (0.367%), neg=0, invalid=762
- 0218: dt=74.605714, rms=0.670 (0.152%), neg=0, invalid=762
- 0219: dt=103.680000, rms=0.669 (0.166%), neg=0, invalid=762
- 0220: dt=62.208000, rms=0.668 (0.143%), neg=0, invalid=762
- 0221: dt=145.152000, rms=0.667 (0.203%), neg=0, invalid=762
- 0222: dt=36.288000, rms=0.666 (0.106%), neg=0, invalid=762
- 0223: dt=145.152000, rms=0.665 (0.201%), neg=0, invalid=762
- 0224: dt=103.680000, rms=0.664 (0.124%), neg=0, invalid=762
- 0225: dt=36.288000, rms=0.663 (0.095%), neg=0, invalid=762
- 0226: dt=36.288000, rms=0.663 (0.059%), neg=0, invalid=762
- 0227: dt=124.416000, rms=0.662 (0.170%), neg=0, invalid=762
- 0228: dt=9.072000, rms=0.662 (0.014%), neg=0, invalid=762
- 0229: dt=9.072000, rms=0.661 (0.012%), neg=0, invalid=762
- 0230: dt=2.268000, rms=0.661 (0.003%), neg=0, invalid=762
- 0231: dt=0.567000, rms=0.661 (0.000%), neg=0, invalid=762
- 0232: dt=0.486000, rms=0.661 (0.001%), neg=0, invalid=762
- 0233: dt=0.035437, rms=0.661 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.663, neg=0, invalid=762
- 0234: dt=145.152000, rms=0.659 (0.642%), neg=0, invalid=762
- 0235: dt=82.944000, rms=0.658 (0.156%), neg=0, invalid=762
- 0236: dt=36.288000, rms=0.657 (0.060%), neg=0, invalid=762
- 0237: dt=145.152000, rms=0.656 (0.215%), neg=0, invalid=762
- 0238: dt=331.776000, rms=0.654 (0.237%), neg=0, invalid=762
- 0239: dt=36.288000, rms=0.653 (0.183%), neg=0, invalid=762
- 0240: dt=124.416000, rms=0.652 (0.138%), neg=0, invalid=762
- 0241: dt=82.944000, rms=0.651 (0.090%), neg=0, invalid=762
- 0242: dt=36.288000, rms=0.651 (0.052%), neg=0, invalid=762
- 0243: dt=580.608000, rms=0.648 (0.496%), neg=0, invalid=762
- 0244: dt=36.288000, rms=0.647 (0.085%), neg=0, invalid=762
- 0245: dt=145.152000, rms=0.647 (0.072%), neg=0, invalid=762
- 0246: dt=124.416000, rms=0.646 (0.103%), neg=0, invalid=762
- 0247: dt=36.288000, rms=0.646 (0.052%), neg=0, invalid=762
- 0248: dt=145.152000, rms=0.645 (0.071%), neg=0, invalid=762
- 0249: dt=36.288000, rms=0.645 (0.040%), neg=0, invalid=762
- 0250: dt=36.288000, rms=0.645 (0.028%), neg=0, invalid=762
- 0251: dt=36.288000, rms=0.645 (0.024%), neg=0, invalid=762
- 0252: dt=18.144000, rms=0.645 (0.012%), neg=0, invalid=762
- 0253: dt=7.776000, rms=0.645 (0.005%), neg=0, invalid=762
- 0254: dt=0.007594, rms=0.645 (-0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.655, neg=0, invalid=762
- 0255: dt=0.000586, rms=0.654 (0.198%), neg=0, invalid=762
- 0256: dt=0.000000, rms=0.654 (0.000%), neg=0, invalid=762
- 0257: dt=0.000031, rms=0.654 (0.000%), neg=0, invalid=762
- 0258: dt=0.000008, rms=0.654 (0.000%), neg=0, invalid=762
- 0259: dt=0.000001, rms=0.654 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.655, neg=0, invalid=762
- 0260: dt=44.800000, rms=0.642 (1.994%), neg=0, invalid=762
- 0261: dt=2.800000, rms=0.641 (0.101%), neg=0, invalid=762
- 0262: dt=2.000000, rms=0.641 (0.070%), neg=0, invalid=762
- 0263: dt=0.175000, rms=0.641 (0.006%), neg=0, invalid=762
- 0264: dt=0.087500, rms=0.641 (0.003%), neg=0, invalid=762
- 0265: dt=0.043750, rms=0.641 (0.002%), neg=0, invalid=762
- 0266: dt=0.002734, rms=0.641 (0.000%), neg=0, invalid=762
- 0267: dt=0.000684, rms=0.641 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.668, neg=0, invalid=762
- 0268: dt=4.032000, rms=0.657 (1.628%), neg=0, invalid=762
- 0269: dt=4.032000, rms=0.650 (1.157%), neg=0, invalid=762
- 0270: dt=4.032000, rms=0.644 (0.937%), neg=0, invalid=762
- 0271: dt=2.880000, rms=0.640 (0.546%), neg=0, invalid=762
- 0272: dt=0.180000, rms=0.640 (0.030%), neg=0, invalid=762
- 0273: dt=0.022500, rms=0.640 (0.003%), neg=0, invalid=762
- 0274: dt=0.005625, rms=0.640 (0.001%), neg=0, invalid=762
- 0275: dt=0.000088, rms=0.640 (0.000%), neg=0, invalid=762
- 0276: dt=0.000000, rms=0.640 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.641, neg=0, invalid=762
- 0277: dt=16.128000, rms=0.626 (2.354%), neg=0, invalid=762
- 0278: dt=16.128000, rms=0.620 (0.903%), neg=0, invalid=762
- 0279: dt=13.824000, rms=0.618 (0.451%), neg=0, invalid=762
- 0280: dt=13.824000, rms=0.616 (0.349%), neg=0, invalid=762
- 0281: dt=11.520000, rms=0.614 (0.224%), neg=0, invalid=762
- 0282: dt=13.824000, rms=0.613 (0.227%), neg=0, invalid=762
- 0283: dt=4.032000, rms=0.612 (0.071%), neg=0, invalid=762
- 0284: dt=4.032000, rms=0.612 (0.062%), neg=0, invalid=762
- 0285: dt=16.128000, rms=0.611 (0.207%), neg=0, invalid=762
- 0286: dt=1.008000, rms=0.611 (0.007%), neg=0, invalid=762
- 0287: dt=0.126000, rms=0.611 (0.002%), neg=0, invalid=762
- 0288: dt=0.126000, rms=0.611 (0.003%), neg=0, invalid=762
- 0289: dt=0.126000, rms=0.611 (0.003%), neg=0, invalid=762
- 0290: dt=0.126000, rms=0.611 (0.004%), neg=0, invalid=762
- 0291: dt=0.126000, rms=0.611 (0.004%), neg=0, invalid=762
- 0292: dt=0.126000, rms=0.610 (0.004%), neg=0, invalid=762
- 0293: dt=16.128000, rms=0.610 (0.151%), neg=0, invalid=762
- 0294: dt=2.880000, rms=0.609 (0.029%), neg=0, invalid=762
- 0295: dt=0.360000, rms=0.609 (0.002%), neg=0, invalid=762
- 0296: dt=0.180000, rms=0.609 (0.002%), neg=0, invalid=762
- 0297: dt=0.090000, rms=0.609 (0.002%), neg=0, invalid=762
- 0298: dt=0.045000, rms=0.609 (0.001%), neg=0, invalid=762
- 0299: dt=0.003938, rms=0.609 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.642, neg=0, invalid=762
- 0300: dt=0.000000, rms=0.641 (0.158%), neg=0, invalid=762
- 0301: dt=0.000000, rms=0.641 (0.000%), neg=0, invalid=762
- 0302: dt=0.100000, rms=0.641 (-0.104%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.642, neg=0, invalid=762
- 0303: dt=0.000000, rms=0.641 (0.158%), neg=0, invalid=762
- 0304: dt=0.000000, rms=0.641 (0.000%), neg=0, invalid=762
- 0305: dt=0.100000, rms=0.641 (-0.088%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.589, neg=0, invalid=762
- 0306: dt=0.448000, rms=0.573 (2.705%), neg=0, invalid=762
- 0307: dt=0.384000, rms=0.569 (0.673%), neg=0, invalid=762
- 0308: dt=0.384000, rms=0.566 (0.427%), neg=0, invalid=762
- 0309: dt=0.384000, rms=0.565 (0.277%), neg=0, invalid=762
- 0310: dt=0.384000, rms=0.564 (0.209%), neg=0, invalid=762
- 0311: dt=0.384000, rms=0.563 (0.152%), neg=0, invalid=762
- 0312: dt=0.384000, rms=0.562 (0.132%), neg=0, invalid=762
- 0313: dt=0.384000, rms=0.561 (0.096%), neg=0, invalid=762
- 0314: dt=0.384000, rms=0.561 (0.090%), neg=0, invalid=762
- 0315: dt=0.384000, rms=0.561 (0.067%), neg=0, invalid=762
- 0316: dt=0.384000, rms=0.560 (0.069%), neg=0, invalid=762
- 0317: dt=0.384000, rms=0.560 (0.046%), neg=0, invalid=762
- 0318: dt=0.384000, rms=0.560 (0.054%), neg=0, invalid=762
- 0319: dt=0.384000, rms=0.559 (0.086%), neg=0, invalid=762
- 0320: dt=0.192000, rms=0.559 (0.026%), neg=0, invalid=762
- 0321: dt=0.192000, rms=0.559 (0.032%), neg=0, invalid=762
- 0322: dt=0.192000, rms=0.558 (0.052%), neg=0, invalid=762
- 0323: dt=0.192000, rms=0.558 (0.053%), neg=0, invalid=762
- 0324: dt=0.192000, rms=0.558 (0.056%), neg=0, invalid=762
- 0325: dt=0.192000, rms=0.558 (0.055%), neg=0, invalid=762
- 0326: dt=0.192000, rms=0.557 (0.060%), neg=0, invalid=762
- 0327: dt=0.192000, rms=0.557 (0.053%), neg=0, invalid=762
- 0328: dt=0.192000, rms=0.557 (0.049%), neg=0, invalid=762
- 0329: dt=0.192000, rms=0.556 (0.039%), neg=0, invalid=762
- 0330: dt=0.192000, rms=0.556 (0.035%), neg=0, invalid=762
- 0331: dt=0.192000, rms=0.556 (0.026%), neg=0, invalid=762
- 0332: dt=0.192000, rms=0.556 (0.025%), neg=0, invalid=762
- 0333: dt=0.192000, rms=0.556 (0.016%), neg=0, invalid=762
- 0334: dt=0.192000, rms=0.556 (0.010%), neg=0, invalid=762
- 0335: dt=0.004000, rms=0.556 (-0.002%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.557, neg=0, invalid=762
- 0336: dt=0.320000, rms=0.552 (0.824%), neg=0, invalid=762
- 0337: dt=0.112000, rms=0.552 (0.077%), neg=0, invalid=762
- 0338: dt=0.112000, rms=0.552 (0.061%), neg=0, invalid=762
- 0339: dt=0.112000, rms=0.551 (0.047%), neg=0, invalid=762
- 0340: dt=0.112000, rms=0.551 (0.033%), neg=0, invalid=762
- 0341: dt=0.112000, rms=0.551 (0.060%), neg=0, invalid=762
- 0342: dt=0.112000, rms=0.551 (0.064%), neg=0, invalid=762
- 0343: dt=0.112000, rms=0.550 (0.048%), neg=0, invalid=762
- 0344: dt=0.112000, rms=0.550 (0.027%), neg=0, invalid=762
- 0345: dt=0.112000, rms=0.550 (-0.006%), neg=0, invalid=762
- 0346: dt=0.000000, rms=0.550 (0.000%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- ********************* ALLOWING NEGATIVE NODES IN DEFORMATION********************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.548, neg=0, invalid=762
- 0347: dt=0.000000, rms=0.547 (0.214%), neg=0, invalid=762
- 0348: dt=0.000000, rms=0.547 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.548, neg=0, invalid=762
- 0349: dt=0.000000, rms=0.547 (0.214%), neg=0, invalid=762
- 0350: dt=0.000000, rms=0.547 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.548, neg=0, invalid=762
- 0351: dt=20.480000, rms=0.546 (0.262%), neg=0, invalid=762
- 0352: dt=9.072000, rms=0.546 (0.010%), neg=0, invalid=762
- 0353: dt=9.072000, rms=0.546 (0.006%), neg=0, invalid=762
- 0354: dt=9.072000, rms=0.546 (-0.002%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.547, neg=0, invalid=762
- 0355: dt=103.680000, rms=0.544 (0.606%), neg=0, invalid=762
- 0356: dt=36.288000, rms=0.543 (0.130%), neg=0, invalid=762
- 0357: dt=36.288000, rms=0.543 (0.048%), neg=0, invalid=762
- 0358: dt=36.288000, rms=0.543 (0.080%), neg=0, invalid=762
- 0359: dt=36.288000, rms=0.542 (0.131%), neg=0, invalid=762
- 0360: dt=36.288000, rms=0.541 (0.116%), neg=0, invalid=762
- 0361: dt=36.288000, rms=0.541 (0.120%), neg=0, invalid=762
- 0362: dt=36.288000, rms=0.540 (0.075%), neg=0, invalid=762
- 0363: dt=36.288000, rms=0.540 (0.035%), neg=0, invalid=762
- 0364: dt=36.288000, rms=0.540 (0.013%), neg=0, invalid=762
- 0365: dt=36.288000, rms=0.540 (0.024%), neg=0, invalid=762
- 0366: dt=36.288000, rms=0.540 (0.044%), neg=0, invalid=762
- 0367: dt=36.288000, rms=0.539 (0.045%), neg=0, invalid=762
- 0368: dt=36.288000, rms=0.539 (0.053%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 2 iterations, nbhd size=0, neg = 0
- 0369: dt=36.288000, rms=0.539 (0.041%), neg=0, invalid=762
- 0370: dt=36.288000, rms=0.539 (0.050%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0371: dt=36.288000, rms=0.538 (0.049%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.540, neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0372: dt=32.000000, rms=0.537 (0.563%), neg=0, invalid=762
- iter 0, gcam->neg = 13
- after 12 iterations, nbhd size=1, neg = 0
- 0373: dt=44.800000, rms=0.536 (0.294%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 12 iterations, nbhd size=1, neg = 0
- 0374: dt=25.600000, rms=0.535 (0.170%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 9 iterations, nbhd size=1, neg = 0
- 0375: dt=25.600000, rms=0.534 (0.122%), neg=0, invalid=762
- iter 0, gcam->neg = 25
- after 12 iterations, nbhd size=1, neg = 0
- 0376: dt=25.600000, rms=0.533 (0.190%), neg=0, invalid=762
- iter 0, gcam->neg = 48
- after 14 iterations, nbhd size=1, neg = 0
- 0377: dt=25.600000, rms=0.532 (0.152%), neg=0, invalid=762
- iter 0, gcam->neg = 55
- after 12 iterations, nbhd size=1, neg = 0
- 0378: dt=25.600000, rms=0.531 (0.141%), neg=0, invalid=762
- iter 0, gcam->neg = 75
- after 11 iterations, nbhd size=1, neg = 0
- 0379: dt=25.600000, rms=0.531 (0.085%), neg=0, invalid=762
- iter 0, gcam->neg = 96
- after 15 iterations, nbhd size=1, neg = 0
- 0380: dt=25.600000, rms=0.531 (0.053%), neg=0, invalid=762
- iter 0, gcam->neg = 15
- after 11 iterations, nbhd size=1, neg = 0
- 0381: dt=44.800000, rms=0.530 (0.128%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 8 iterations, nbhd size=1, neg = 0
- 0382: dt=25.459854, rms=0.529 (0.137%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 11 iterations, nbhd size=1, neg = 0
- 0383: dt=25.600000, rms=0.529 (0.051%), neg=0, invalid=762
- 0384: dt=25.600000, rms=0.529 (0.063%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 2 iterations, nbhd size=0, neg = 0
- 0385: dt=25.600000, rms=0.528 (0.086%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 13 iterations, nbhd size=1, neg = 0
- 0386: dt=25.600000, rms=0.528 (0.077%), neg=0, invalid=762
- iter 0, gcam->neg = 11
- after 12 iterations, nbhd size=1, neg = 0
- 0387: dt=25.600000, rms=0.527 (0.134%), neg=0, invalid=762
- iter 0, gcam->neg = 13
- after 13 iterations, nbhd size=1, neg = 0
- 0388: dt=25.600000, rms=0.527 (0.084%), neg=0, invalid=762
- iter 0, gcam->neg = 19
- after 13 iterations, nbhd size=1, neg = 0
- 0389: dt=25.600000, rms=0.526 (0.114%), neg=0, invalid=762
- iter 0, gcam->neg = 23
- after 12 iterations, nbhd size=1, neg = 0
- 0390: dt=25.600000, rms=0.526 (0.071%), neg=0, invalid=762
- 0391: dt=11.200000, rms=0.526 (0.036%), neg=0, invalid=762
- 0392: dt=11.200000, rms=0.525 (0.006%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 8 iterations, nbhd size=1, neg = 0
- 0393: dt=11.200000, rms=0.525 (0.009%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 7 iterations, nbhd size=1, neg = 0
- 0394: dt=11.200000, rms=0.525 (0.010%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 9 iterations, nbhd size=1, neg = 0
- 0395: dt=11.200000, rms=0.525 (0.012%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 12 iterations, nbhd size=1, neg = 0
- 0396: dt=11.200000, rms=0.525 (0.019%), neg=0, invalid=762
- iter 0, gcam->neg = 14
- after 10 iterations, nbhd size=1, neg = 0
- 0397: dt=11.200000, rms=0.525 (0.018%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 13 iterations, nbhd size=1, neg = 0
- 0398: dt=11.200000, rms=0.525 (0.020%), neg=0, invalid=762
- iter 0, gcam->neg = 12
- after 9 iterations, nbhd size=1, neg = 0
- 0399: dt=11.200000, rms=0.525 (0.021%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 6 iterations, nbhd size=0, neg = 0
- 0400: dt=11.200000, rms=0.525 (0.031%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 10 iterations, nbhd size=1, neg = 0
- 0401: dt=11.200000, rms=0.525 (0.033%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 10 iterations, nbhd size=1, neg = 0
- 0402: dt=11.200000, rms=0.524 (0.030%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.526, neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 2 iterations, nbhd size=0, neg = 0
- 0403: dt=65.426752, rms=0.520 (1.060%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 1 iterations, nbhd size=0, neg = 0
- 0404: dt=30.086379, rms=0.518 (0.371%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0405: dt=23.255814, rms=0.517 (0.135%), neg=0, invalid=762
- 0406: dt=23.255814, rms=0.517 (0.108%), neg=0, invalid=762
- 0407: dt=23.255814, rms=0.516 (0.158%), neg=0, invalid=762
- iter 0, gcam->neg = 7
- after 9 iterations, nbhd size=1, neg = 0
- 0408: dt=23.255814, rms=0.515 (0.151%), neg=0, invalid=762
- iter 0, gcam->neg = 8
- after 2 iterations, nbhd size=0, neg = 0
- 0409: dt=23.255814, rms=0.514 (0.168%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 1 iterations, nbhd size=0, neg = 0
- 0410: dt=23.255814, rms=0.514 (0.100%), neg=0, invalid=762
- iter 0, gcam->neg = 11
- after 5 iterations, nbhd size=0, neg = 0
- 0411: dt=23.255814, rms=0.514 (0.080%), neg=0, invalid=762
- 0412: dt=11.200000, rms=0.513 (0.025%), neg=0, invalid=762
- 0413: dt=11.200000, rms=0.513 (0.018%), neg=0, invalid=762
- 0414: dt=11.200000, rms=0.513 (0.029%), neg=0, invalid=762
- 0415: dt=11.200000, rms=0.513 (0.035%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 3 iterations, nbhd size=0, neg = 0
- 0416: dt=11.200000, rms=0.513 (0.032%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 7 iterations, nbhd size=1, neg = 0
- 0417: dt=11.200000, rms=0.513 (0.023%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.523, neg=0, invalid=762
- 0418: dt=0.000176, rms=0.522 (0.229%), neg=0, invalid=762
- 0419: dt=0.000000, rms=0.522 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.523, neg=0, invalid=762
- 0420: dt=2.800000, rms=0.522 (0.257%), neg=0, invalid=762
- 0421: dt=2.304000, rms=0.522 (0.020%), neg=0, invalid=762
- 0422: dt=2.304000, rms=0.522 (0.012%), neg=0, invalid=762
- 0423: dt=2.304000, rms=0.522 (-0.003%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.538, neg=0, invalid=762
- 0424: dt=1.280000, rms=0.536 (0.374%), neg=0, invalid=762
- 0425: dt=0.768000, rms=0.536 (0.035%), neg=0, invalid=762
- 0426: dt=0.768000, rms=0.536 (0.000%), neg=0, invalid=762
- 0427: dt=0.768000, rms=0.536 (-0.111%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.537, neg=0, invalid=762
- 0428: dt=2.142857, rms=0.534 (0.582%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0429: dt=1.792000, rms=0.533 (0.082%), neg=0, invalid=762
- 0430: dt=1.792000, rms=0.533 (0.090%), neg=0, invalid=762
- 0431: dt=1.792000, rms=0.533 (0.029%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 7 iterations, nbhd size=1, neg = 0
- 0432: dt=1.792000, rms=0.533 (-0.082%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.526, neg=0, invalid=762
- iter 0, gcam->neg = 1710
- after 17 iterations, nbhd size=1, neg = 0
- 0433: dt=1.888747, rms=0.501 (4.793%), neg=0, invalid=762
- 0434: dt=0.080000, rms=0.501 (0.051%), neg=0, invalid=762
- 0435: dt=0.080000, rms=0.501 (-0.039%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.502, neg=0, invalid=762
- 0436: dt=0.112000, rms=0.500 (0.337%), neg=0, invalid=762
- 0437: dt=0.007000, rms=0.500 (-0.003%), neg=0, invalid=762
- 0438: dt=0.007000, rms=0.500 (0.000%), neg=0, invalid=762
- 0439: dt=0.007000, rms=0.500 (-0.002%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- label assignment complete, 0 changed (0.00%)
- ***************** morphing with label term set to 0 *******************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.490, neg=0, invalid=762
- 0440: dt=0.000000, rms=0.490 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.490, neg=0, invalid=762
- 0441: dt=295.936000, rms=0.489 (0.090%), neg=0, invalid=762
- 0442: dt=0.000000, rms=0.489 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.489, neg=0, invalid=762
- 0443: dt=0.000000, rms=0.489 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.489, neg=0, invalid=762
- 0444: dt=36.288000, rms=0.489 (0.045%), neg=0, invalid=762
- 0445: dt=145.152000, rms=0.489 (0.099%), neg=0, invalid=762
- 0446: dt=103.680000, rms=0.488 (0.070%), neg=0, invalid=762
- 0447: dt=103.680000, rms=0.488 (-0.044%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.489, neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 6 iterations, nbhd size=1, neg = 0
- 0448: dt=22.488665, rms=0.487 (0.331%), neg=0, invalid=762
- 0449: dt=25.600000, rms=0.487 (0.103%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 10 iterations, nbhd size=1, neg = 0
- 0450: dt=25.600000, rms=0.486 (0.066%), neg=0, invalid=762
- iter 0, gcam->neg = 37
- after 14 iterations, nbhd size=1, neg = 0
- 0451: dt=25.600000, rms=0.486 (-0.142%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.486, neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 7 iterations, nbhd size=1, neg = 0
- 0452: dt=44.800000, rms=0.482 (0.966%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 8 iterations, nbhd size=1, neg = 0
- 0453: dt=32.000000, rms=0.480 (0.345%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 8 iterations, nbhd size=1, neg = 0
- 0454: dt=25.600000, rms=0.479 (0.122%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 1 iterations, nbhd size=0, neg = 0
- 0455: dt=25.600000, rms=0.479 (0.151%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 1 iterations, nbhd size=0, neg = 0
- 0456: dt=25.600000, rms=0.478 (0.194%), neg=0, invalid=762
- iter 0, gcam->neg = 11
- after 10 iterations, nbhd size=1, neg = 0
- 0457: dt=25.600000, rms=0.477 (0.207%), neg=0, invalid=762
- iter 0, gcam->neg = 14
- after 10 iterations, nbhd size=1, neg = 0
- 0458: dt=25.600000, rms=0.476 (0.200%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 1 iterations, nbhd size=0, neg = 0
- 0459: dt=25.600000, rms=0.475 (0.244%), neg=0, invalid=762
- iter 0, gcam->neg = 34
- after 12 iterations, nbhd size=1, neg = 0
- 0460: dt=25.600000, rms=0.474 (0.175%), neg=0, invalid=762
- iter 0, gcam->neg = 28
- after 14 iterations, nbhd size=1, neg = 0
- 0461: dt=25.600000, rms=0.473 (0.108%), neg=0, invalid=762
- iter 0, gcam->neg = 24
- after 13 iterations, nbhd size=1, neg = 0
- 0462: dt=25.600000, rms=0.473 (0.077%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 5 iterations, nbhd size=0, neg = 0
- 0463: dt=32.000000, rms=0.473 (0.048%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 1 iterations, nbhd size=0, neg = 0
- 0464: dt=32.000000, rms=0.473 (-0.016%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.478, neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0465: dt=2.666667, rms=0.478 (0.030%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 0 iterations, nbhd size=0, neg = 0
- 0466: dt=1.008000, rms=0.478 (0.007%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 7 iterations, nbhd size=1, neg = 0
- 0467: dt=1.008000, rms=0.478 (-0.001%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.478, neg=0, invalid=762
- iter 0, gcam->neg = 7
- after 8 iterations, nbhd size=1, neg = 0
- 0468: dt=8.095238, rms=0.478 (0.128%), neg=0, invalid=762
- iter 0, gcam->neg = 40
- after 17 iterations, nbhd size=1, neg = 0
- 0469: dt=16.533333, rms=0.477 (0.125%), neg=0, invalid=762
- iter 0, gcam->neg = 63
- after 13 iterations, nbhd size=1, neg = 0
- 0470: dt=16.533333, rms=0.476 (0.230%), neg=0, invalid=762
- iter 0, gcam->neg = 163
- after 16 iterations, nbhd size=1, neg = 0
- 0471: dt=16.533333, rms=0.475 (0.233%), neg=0, invalid=762
- iter 0, gcam->neg = 238
- after 17 iterations, nbhd size=1, neg = 0
- 0472: dt=16.533333, rms=0.474 (0.153%), neg=0, invalid=762
- iter 0, gcam->neg = 355
- after 15 iterations, nbhd size=1, neg = 0
- 0473: dt=16.533333, rms=0.474 (0.114%), neg=0, invalid=762
- iter 0, gcam->neg = 506
- after 20 iterations, nbhd size=1, neg = 0
- 0474: dt=16.533333, rms=0.473 (0.227%), neg=0, invalid=762
- iter 0, gcam->neg = 635
- after 25 iterations, nbhd size=1, neg = 0
- 0475: dt=16.533333, rms=0.472 (0.121%), neg=0, invalid=762
- iter 0, gcam->neg = 716
- after 23 iterations, nbhd size=1, neg = 0
- 0476: dt=16.533333, rms=0.472 (-0.129%), neg=0, invalid=762
- iter 0, gcam->neg = 48
- after 13 iterations, nbhd size=1, neg = 0
- 0477: dt=8.181818, rms=0.472 (0.090%), neg=0, invalid=762
- iter 0, gcam->neg = 44
- after 14 iterations, nbhd size=1, neg = 0
- 0478: dt=12.190476, rms=0.471 (0.030%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.479, neg=0, invalid=762
- 0479: dt=0.000050, rms=0.479 (0.000%), neg=0, invalid=762
- 0480: dt=0.000000, rms=0.479 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.479, neg=0, invalid=762
- 0481: dt=0.000000, rms=0.479 (0.000%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.466, neg=0, invalid=762
- iter 0, gcam->neg = 1154
- after 18 iterations, nbhd size=1, neg = 0
- 0482: dt=0.983858, rms=0.460 (1.222%), neg=0, invalid=762
- 0483: dt=0.028000, rms=0.460 (0.004%), neg=0, invalid=762
- 0484: dt=0.028000, rms=0.460 (0.000%), neg=0, invalid=762
- 0485: dt=0.028000, rms=0.460 (-0.012%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.460, neg=0, invalid=762
- 0486: dt=0.256000, rms=0.459 (0.212%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 0 iterations, nbhd size=0, neg = 0
- 0487: dt=0.448000, rms=0.458 (0.304%), neg=0, invalid=762
- iter 0, gcam->neg = 14
- after 11 iterations, nbhd size=1, neg = 0
- 0488: dt=0.448000, rms=0.457 (0.206%), neg=0, invalid=762
- iter 0, gcam->neg = 20
- after 1 iterations, nbhd size=0, neg = 0
- 0489: dt=0.448000, rms=0.456 (0.198%), neg=0, invalid=762
- iter 0, gcam->neg = 50
- after 3 iterations, nbhd size=0, neg = 0
- 0490: dt=0.448000, rms=0.455 (0.261%), neg=0, invalid=762
- iter 0, gcam->neg = 106
- after 10 iterations, nbhd size=1, neg = 0
- 0491: dt=0.448000, rms=0.454 (0.126%), neg=0, invalid=762
- iter 0, gcam->neg = 154
- after 14 iterations, nbhd size=1, neg = 0
- 0492: dt=0.448000, rms=0.454 (-0.259%), neg=0, invalid=762
- 0493: dt=0.256000, rms=0.454 (0.151%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 7 iterations, nbhd size=1, neg = 0
- 0494: dt=0.384000, rms=0.453 (0.097%), neg=0, invalid=762
- writing output transformation to transforms/talairach.m3z...
- GCAMwrite
- mri_ca_register took 2 hours, 26 minutes and 13 seconds.
- mri_ca_register utimesec 9723.145857
- mri_ca_register stimesec 10.393419
- mri_ca_register ru_maxrss 1337152
- mri_ca_register ru_ixrss 0
- mri_ca_register ru_idrss 0
- mri_ca_register ru_isrss 0
- mri_ca_register ru_minflt 6061109
- mri_ca_register ru_majflt 0
- mri_ca_register ru_nswap 0
- mri_ca_register ru_inblock 0
- mri_ca_register ru_oublock 65040
- mri_ca_register ru_msgsnd 0
- mri_ca_register ru_msgrcv 0
- mri_ca_register ru_nsignals 0
- mri_ca_register ru_nvcsw 3996
- mri_ca_register ru_nivcsw 29804
- FSRUNTIME@ mri_ca_register 2.4369 hours 2 threads
- #--------------------------------------
- #@# SubCort Seg Sat Oct 7 22:15:22 CEST 2017
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- sysname Linux
- hostname tars-970
- machine x86_64
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- == Number of threads available to mri_ca_label for OpenMP = 2 ==
- relabeling unlikely voxels with window_size = 9 and prior threshold 0.30
- using Gibbs prior factor = 0.500
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -renormalize_mean 0.500
- -regularize 0.500
- reading 1 input volumes
- reading classifier array from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- reading input volume from norm.mgz
- average std[0] = 7.3
- reading transform from transforms/talairach.m3z
- setting orig areas to linear transform determinant scaled 6.06
- Atlas used for the 3D morph was /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 0 ill-conditioned covariance matrices regularized
- labeling volume...
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.16259 (20)
- mri peak = 0.13035 (21)
- Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (3924 voxels, overlap=0.907)
- Left_Lateral_Ventricle (4): linear fit = 1.02 x + 0.0 (3924 voxels, peak = 20), gca=20.5
- gca peak = 0.17677 (13)
- mri peak = 0.12928 (22)
- Right_Lateral_Ventricle (43): linear fit = 1.57 x + 0.0 (3840 voxels, overlap=0.529)
- Right_Lateral_Ventricle (43): linear fit = 1.50 x + 0.0 (3840 voxels, peak = 20), gca=19.5
- gca peak = 0.28129 (95)
- mri peak = 0.12096 (86)
- Right_Pallidum (52): linear fit = 0.89 x + 0.0 (474 voxels, overlap=0.025)
- Right_Pallidum (52): linear fit = 0.89 x + 0.0 (474 voxels, peak = 85), gca=85.0
- gca peak = 0.16930 (96)
- mri peak = 0.12426 (93)
- Left_Pallidum (13): linear fit = 0.96 x + 0.0 (586 voxels, overlap=0.832)
- Left_Pallidum (13): linear fit = 0.96 x + 0.0 (586 voxels, peak = 93), gca=92.6
- gca peak = 0.24553 (55)
- mri peak = 0.12903 (53)
- Right_Hippocampus: unreasonable value (49.8/53.0), not in range [50, 90] - rejecting
- gca peak = 0.30264 (59)
- mri peak = 0.07371 (50)
- Left_Hippocampus (17): linear fit = 0.96 x + 0.0 (748 voxels, overlap=0.712)
- Left_Hippocampus (17): linear fit = 0.96 x + 0.0 (748 voxels, peak = 57), gca=56.9
- gca peak = 0.07580 (103)
- mri peak = 0.07099 (102)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (20085 voxels, overlap=0.815)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (20085 voxels, peak = 102), gca=102.5
- gca peak = 0.07714 (104)
- mri peak = 0.07407 (111)
- Left_Cerebral_White_Matter (2): linear fit = 1.09 x + 0.0 (23015 voxels, overlap=0.354)
- Left_Cerebral_White_Matter (2): linear fit = 1.09 x + 0.0 (23015 voxels, peak = 113), gca=112.8
- gca peak = 0.09712 (58)
- mri peak = 0.04996 (45)
- Left_Cerebral_Cortex (3): linear fit = 0.80 x + 0.0 (38760 voxels, overlap=0.553)
- Left_Cerebral_Cortex (3): linear fit = 0.80 x + 0.0 (38760 voxels, peak = 46), gca=46.1
- gca peak = 0.11620 (58)
- mri peak = 0.05218 (40)
- Right_Cerebral_Cortex (42): linear fit = 0.75 x + 0.0 (33037 voxels, overlap=0.679)
- Right_Cerebral_Cortex (42): linear fit = 0.75 x + 0.0 (33037 voxels, peak = 43), gca=43.2
- gca peak = 0.30970 (66)
- mri peak = 0.11279 (69)
- Right_Caudate (50): linear fit = 1.03 x + 0.0 (1594 voxels, overlap=1.002)
- Right_Caudate (50): linear fit = 1.03 x + 0.0 (1594 voxels, peak = 68), gca=68.3
- gca peak = 0.15280 (69)
- mri peak = 0.11979 (70)
- Left_Caudate (11): linear fit = 0.96 x + 0.0 (1401 voxels, overlap=0.803)
- Left_Caudate (11): linear fit = 0.96 x + 0.0 (1401 voxels, peak = 67), gca=66.6
- gca peak = 0.13902 (56)
- mri peak = 0.03813 (36)
- Left_Cerebellum_Cortex (8): linear fit = 0.75 x + 0.0 (15169 voxels, overlap=0.045)
- Left_Cerebellum_Cortex (8): linear fit = 0.75 x + 0.0 (15169 voxels, peak = 42), gca=41.7
- gca peak = 0.14777 (55)
- mri peak = 0.03928 (45)
- Right_Cerebellum_Cortex (47): linear fit = 0.76 x + 0.0 (13922 voxels, overlap=0.008)
- Right_Cerebellum_Cortex (47): linear fit = 0.76 x + 0.0 (13922 voxels, peak = 42), gca=42.1
- gca peak = 0.16765 (84)
- mri peak = 0.05233 (82)
- Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (3607 voxels, overlap=0.988)
- Left_Cerebellum_White_Matter (7): linear fit = 0.99 x + 0.0 (3607 voxels, peak = 83), gca=82.7
- gca peak = 0.18739 (84)
- mri peak = 0.06979 (79)
- Right_Cerebellum_White_Matter (46): linear fit = 0.93 x + 0.0 (2704 voxels, overlap=1.000)
- Right_Cerebellum_White_Matter (46): linear fit = 0.93 x + 0.0 (2704 voxels, peak = 78), gca=77.7
- gca peak = 0.29869 (57)
- mri peak = 0.16296 (50)
- Left_Amygdala (18): linear fit = 0.89 x + 0.0 (408 voxels, overlap=0.561)
- Left_Amygdala (18): linear fit = 0.89 x + 0.0 (408 voxels, peak = 51), gca=51.0
- gca peak = 0.33601 (57)
- mri peak = 0.18831 (53)
- Right_Amygdala (54): linear fit = 0.92 x + 0.0 (389 voxels, overlap=0.996)
- Right_Amygdala (54): linear fit = 0.92 x + 0.0 (389 voxels, peak = 52), gca=52.2
- gca peak = 0.11131 (90)
- mri peak = 0.06360 (88)
- Left_Thalamus_Proper (10): linear fit = 1.01 x + 0.0 (4174 voxels, overlap=0.973)
- Left_Thalamus_Proper (10): linear fit = 1.01 x + 0.0 (4174 voxels, peak = 91), gca=91.3
- gca peak = 0.11793 (83)
- mri peak = 0.07464 (84)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4018 voxels, overlap=0.974)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4018 voxels, peak = 83), gca=82.6
- gca peak = 0.08324 (81)
- mri peak = 0.07186 (73)
- Left_Putamen (12): linear fit = 0.94 x + 0.0 (1519 voxels, overlap=0.797)
- Left_Putamen (12): linear fit = 0.94 x + 0.0 (1519 voxels, peak = 77), gca=76.5
- gca peak = 0.10360 (77)
- mri peak = 0.12003 (68)
- Right_Putamen (51): linear fit = 0.87 x + 0.0 (1254 voxels, overlap=0.258)
- Right_Putamen (51): linear fit = 0.87 x + 0.0 (1254 voxels, peak = 67), gca=66.6
- gca peak = 0.08424 (78)
- mri peak = 0.06959 (90)
- Brain_Stem (16): linear fit = 1.12 x + 0.0 (7771 voxels, overlap=0.476)
- Brain_Stem (16): linear fit = 1.12 x + 0.0 (7771 voxels, peak = 88), gca=87.8
- gca peak = 0.12631 (89)
- mri peak = 0.07449 (100)
- Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1246 voxels, overlap=0.520)
- Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1246 voxels, peak = 100), gca=100.1
- gca peak = 0.14500 (87)
- mri peak = 0.06320 (99)
- Left_VentralDC (28): linear fit = 1.13 x + 0.0 (1419 voxels, overlap=0.882)
- Left_VentralDC (28): linear fit = 1.13 x + 0.0 (1419 voxels, peak = 99), gca=98.7
- gca peak = 0.14975 (24)
- mri peak = 0.21429 (16)
- gca peak = 0.19357 (14)
- mri peak = 0.16197 (10)
- Fourth_Ventricle (15): linear fit = 0.62 x + 0.0 (413 voxels, overlap=0.254)
- Fourth_Ventricle (15): linear fit = 0.62 x + 0.0 (413 voxels, peak = 9), gca=8.8
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.16825 (27)
- gca peak Left_Thalamus = 1.00000 (94)
- gca peak Third_Ventricle = 0.14975 (24)
- gca peak Fourth_Ventricle = 0.19357 (14)
- gca peak CSF = 0.23379 (36)
- gca peak Left_Accumbens_area = 0.70037 (62)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.75997 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.24655 (23)
- gca peak Right_Hippocampus = 0.24553 (55)
- gca peak Right_Accumbens_area = 0.45042 (65)
- gca peak Right_vessel = 0.82168 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.65475 (32)
- gca peak WM_hypointensities = 0.07854 (76)
- gca peak non_WM_hypointensities = 0.08491 (43)
- gca peak Optic_Chiasm = 0.71127 (75)
- not using caudate to estimate GM means
- setting label Right_Hippocampus based on Left_Hippocampus = 0.96 x + 0: 57
- estimating mean gm scale to be 0.88 x + 0.0
- estimating mean wm scale to be 1.04 x + 0.0
- estimating mean csf scale to be 1.26 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.15138 (21)
- mri peak = 0.13035 (21)
- Left_Lateral_Ventricle (4): linear fit = 0.98 x + 0.0 (3924 voxels, overlap=0.901)
- Left_Lateral_Ventricle (4): linear fit = 0.98 x + 0.0 (3924 voxels, peak = 20), gca=20.5
- gca peak = 0.13442 (19)
- mri peak = 0.12928 (22)
- Right_Lateral_Ventricle (43): linear fit = 1.02 x + 0.0 (3840 voxels, overlap=0.630)
- Right_Lateral_Ventricle (43): linear fit = 1.02 x + 0.0 (3840 voxels, peak = 19), gca=19.5
- gca peak = 0.30485 (85)
- mri peak = 0.12096 (86)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (474 voxels, overlap=1.001)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (474 voxels, peak = 85), gca=85.0
- gca peak = 0.20935 (93)
- mri peak = 0.12426 (93)
- Left_Pallidum (13): linear fit = 1.01 x + 0.0 (586 voxels, overlap=0.998)
- Left_Pallidum (13): linear fit = 1.01 x + 0.0 (586 voxels, peak = 94), gca=94.4
- gca peak = 0.25213 (54)
- mri peak = 0.12903 (53)
- Right_Hippocampus (53): linear fit = 0.94 x + 0.0 (675 voxels, overlap=0.962)
- Right_Hippocampus (53): linear fit = 0.94 x + 0.0 (675 voxels, peak = 51), gca=51.0
- gca peak = 0.30389 (57)
- mri peak = 0.07371 (50)
- Left_Hippocampus (17): linear fit = 1.12 x + 0.0 (748 voxels, overlap=1.009)
- Left_Hippocampus (17): linear fit = 1.12 x + 0.0 (748 voxels, peak = 64), gca=63.6
- gca peak = 0.07854 (102)
- mri peak = 0.07099 (102)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (20085 voxels, overlap=0.801)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (20085 voxels, peak = 101), gca=101.5
- gca peak = 0.07256 (113)
- mri peak = 0.07407 (111)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (23015 voxels, overlap=0.751)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (23015 voxels, peak = 114), gca=113.6
- gca peak = 0.12309 (46)
- mri peak = 0.04996 (45)
- Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (38760 voxels, overlap=0.991)
- Left_Cerebral_Cortex (3): linear fit = 0.98 x + 0.0 (38760 voxels, peak = 45), gca=44.9
- gca peak = 0.15599 (43)
- mri peak = 0.05218 (40)
- Right_Cerebral_Cortex (42): linear fit = 1.03 x + 0.0 (33037 voxels, overlap=0.943)
- Right_Cerebral_Cortex (42): linear fit = 1.03 x + 0.0 (33037 voxels, peak = 45), gca=44.5
- gca peak = 0.26387 (69)
- mri peak = 0.11279 (69)
- Right_Caudate (50): linear fit = 0.99 x + 0.0 (1594 voxels, overlap=1.003)
- Right_Caudate (50): linear fit = 0.99 x + 0.0 (1594 voxels, peak = 68), gca=68.0
- gca peak = 0.13034 (67)
- mri peak = 0.11979 (70)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1401 voxels, overlap=0.994)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1401 voxels, peak = 67), gca=67.0
- gca peak = 0.18851 (41)
- mri peak = 0.03813 (36)
- Left_Cerebellum_Cortex (8): linear fit = 1.03 x + 0.0 (15169 voxels, overlap=1.000)
- Left_Cerebellum_Cortex (8): linear fit = 1.03 x + 0.0 (15169 voxels, peak = 42), gca=42.4
- gca peak = 0.19879 (42)
- mri peak = 0.03928 (45)
- Right_Cerebellum_Cortex (47): linear fit = 0.98 x + 0.0 (13922 voxels, overlap=0.997)
- Right_Cerebellum_Cortex (47): linear fit = 0.98 x + 0.0 (13922 voxels, peak = 41), gca=41.0
- gca peak = 0.16089 (83)
- mri peak = 0.05233 (82)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (3607 voxels, overlap=0.981)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (3607 voxels, peak = 83), gca=82.6
- gca peak = 0.19157 (78)
- mri peak = 0.06979 (79)
- Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (2704 voxels, overlap=0.949)
- Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (2704 voxels, peak = 79), gca=79.2
- gca peak = 0.31249 (52)
- mri peak = 0.16296 (50)
- Left_Amygdala (18): linear fit = 1.00 x + 0.0 (408 voxels, overlap=1.007)
- Left_Amygdala (18): linear fit = 1.00 x + 0.0 (408 voxels, peak = 52), gca=52.0
- gca peak = 0.30454 (52)
- mri peak = 0.18831 (53)
- Right_Amygdala (54): linear fit = 1.00 x + 0.0 (389 voxels, overlap=0.995)
- Right_Amygdala (54): linear fit = 1.00 x + 0.0 (389 voxels, peak = 52), gca=52.0
- gca peak = 0.10575 (90)
- mri peak = 0.06360 (88)
- Left_Thalamus_Proper (10): linear fit = 0.99 x + 0.0 (4174 voxels, overlap=0.990)
- Left_Thalamus_Proper (10): linear fit = 0.99 x + 0.0 (4174 voxels, peak = 89), gca=88.7
- gca peak = 0.10035 (83)
- mri peak = 0.07464 (84)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4018 voxels, overlap=0.966)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4018 voxels, peak = 83), gca=82.6
- gca peak = 0.09388 (78)
- mri peak = 0.07186 (73)
- Left_Putamen (12): linear fit = 1.00 x + 0.0 (1519 voxels, overlap=0.996)
- Left_Putamen (12): linear fit = 1.00 x + 0.0 (1519 voxels, peak = 78), gca=78.0
- gca peak = 0.10502 (66)
- mri peak = 0.12003 (68)
- Right_Putamen (51): linear fit = 1.01 x + 0.0 (1254 voxels, overlap=0.913)
- Right_Putamen (51): linear fit = 1.01 x + 0.0 (1254 voxels, peak = 67), gca=67.0
- gca peak = 0.07373 (88)
- mri peak = 0.06959 (90)
- Brain_Stem (16): linear fit = 0.99 x + 0.0 (7771 voxels, overlap=0.811)
- Brain_Stem (16): linear fit = 0.99 x + 0.0 (7771 voxels, peak = 87), gca=86.7
- gca peak = 0.09907 (100)
- mri peak = 0.07449 (100)
- Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1246 voxels, overlap=0.818)
- Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1246 voxels, peak = 100), gca=100.5
- gca peak = 0.15405 (97)
- mri peak = 0.06320 (99)
- Left_VentralDC (28): linear fit = 0.99 x + 0.0 (1419 voxels, overlap=0.930)
- Left_VentralDC (28): linear fit = 0.99 x + 0.0 (1419 voxels, peak = 96), gca=95.5
- gca peak = 0.12792 (33)
- mri peak = 0.21429 (16)
- gca peak = 0.16542 (20)
- mri peak = 0.16197 (10)
- Fourth_Ventricle (15): linear fit = 0.46 x + 0.0 (413 voxels, overlap=0.025)
- Fourth_Ventricle (15): linear fit = 0.46 x + 0.0 (413 voxels, peak = 9), gca=9.1
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.17808 (26)
- gca peak Left_Thalamus = 0.64095 (88)
- gca peak Third_Ventricle = 0.12792 (33)
- gca peak Fourth_Ventricle = 0.16542 (20)
- gca peak CSF = 0.23889 (46)
- gca peak Left_Accumbens_area = 0.81130 (60)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.69080 (52)
- gca peak Left_choroid_plexus = 0.11916 (35)
- gca peak Right_Inf_Lat_Vent = 0.20587 (22)
- gca peak Right_Accumbens_area = 0.29884 (67)
- gca peak Right_vessel = 0.72130 (52)
- gca peak Right_choroid_plexus = 0.14555 (37)
- gca peak Fifth_Ventricle = 0.62949 (40)
- gca peak WM_hypointensities = 0.06903 (79)
- gca peak non_WM_hypointensities = 0.10252 (45)
- gca peak Optic_Chiasm = 0.59207 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.01 x + 0.0
- estimating mean wm scale to be 1.00 x + 0.0
- estimating mean csf scale to be 1.00 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt
- 78204 voxels changed in iteration 0 of unlikely voxel relabeling
- 112 voxels changed in iteration 1 of unlikely voxel relabeling
- 0 voxels changed in iteration 2 of unlikely voxel relabeling
- 23140 gm and wm labels changed (%28 to gray, %72 to white out of all changed labels)
- 469 hippocampal voxels changed.
- 0 amygdala voxels changed.
- pass 1: 79617 changed. image ll: -2.149, PF=0.500
- pass 2: 28079 changed. image ll: -2.148, PF=0.500
- pass 3: 11595 changed.
- pass 4: 5323 changed.
- pass 5: 2642 changed.
- 46280 voxels changed in iteration 0 of unlikely voxel relabeling
- 477 voxels changed in iteration 1 of unlikely voxel relabeling
- 24 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 6672 voxels changed in iteration 0 of unlikely voxel relabeling
- 171 voxels changed in iteration 1 of unlikely voxel relabeling
- 35 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 5438 voxels changed in iteration 0 of unlikely voxel relabeling
- 49 voxels changed in iteration 1 of unlikely voxel relabeling
- 2 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 4836 voxels changed in iteration 0 of unlikely voxel relabeling
- 43 voxels changed in iteration 1 of unlikely voxel relabeling
- 2 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- MRItoUCHAR: min=0, max=85
- MRItoUCHAR: converting to UCHAR
- writing labeled volume to aseg.auto_noCCseg.mgz
- mri_ca_label utimesec 3947.558879
- mri_ca_label stimesec 1.410785
- mri_ca_label ru_maxrss 2097296
- mri_ca_label ru_ixrss 0
- mri_ca_label ru_idrss 0
- mri_ca_label ru_isrss 0
- mri_ca_label ru_minflt 723989
- mri_ca_label ru_majflt 0
- mri_ca_label ru_nswap 0
- mri_ca_label ru_inblock 65032
- mri_ca_label ru_oublock 440
- mri_ca_label ru_msgsnd 0
- mri_ca_label ru_msgrcv 0
- mri_ca_label ru_nsignals 0
- mri_ca_label ru_nvcsw 246
- mri_ca_label ru_nivcsw 5258
- auto-labeling took 65 minutes and 6 seconds.
- mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/transforms/cc_up.lta 0051180
- will read input aseg from aseg.auto_noCCseg.mgz
- writing aseg with cc labels to aseg.auto.mgz
- will write lta as /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/transforms/cc_up.lta
- reading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aseg.auto_noCCseg.mgz
- reading norm from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/norm.mgz
- 81103 voxels in left wm, 100764 in right wm, xrange [118, 139]
- searching rotation angles z=[-10 4], y=[ 0 14]
-
searching scale 1 Z rot -9.8
searching scale 1 Z rot -9.6
searching scale 1 Z rot -9.3
searching scale 1 Z rot -9.1
searching scale 1 Z rot -8.8
searching scale 1 Z rot -8.6
searching scale 1 Z rot -8.3
searching scale 1 Z rot -8.1
searching scale 1 Z rot -7.8
searching scale 1 Z rot -7.6
searching scale 1 Z rot -7.3
searching scale 1 Z rot -7.1
searching scale 1 Z rot -6.8
searching scale 1 Z rot -6.6
searching scale 1 Z rot -6.3
searching scale 1 Z rot -6.1
searching scale 1 Z rot -5.8
searching scale 1 Z rot -5.6
searching scale 1 Z rot -5.3
searching scale 1 Z rot -5.1
searching scale 1 Z rot -4.8
searching scale 1 Z rot -4.6
searching scale 1 Z rot -4.3
searching scale 1 Z rot -4.1
searching scale 1 Z rot -3.8
searching scale 1 Z rot -3.6
searching scale 1 Z rot -3.3
searching scale 1 Z rot -3.1
searching scale 1 Z rot -2.8
searching scale 1 Z rot -2.6
searching scale 1 Z rot -2.3
searching scale 1 Z rot -2.1
searching scale 1 Z rot -1.8
searching scale 1 Z rot -1.6
searching scale 1 Z rot -1.3
searching scale 1 Z rot -1.1
searching scale 1 Z rot -0.8
searching scale 1 Z rot -0.6
searching scale 1 Z rot -0.3
searching scale 1 Z rot -0.1
searching scale 1 Z rot 0.2
searching scale 1 Z rot 0.4
searching scale 1 Z rot 0.7
searching scale 1 Z rot 0.9
searching scale 1 Z rot 1.2
searching scale 1 Z rot 1.4
searching scale 1 Z rot 1.7
searching scale 1 Z rot 1.9
searching scale 1 Z rot 2.2
searching scale 1 Z rot 2.4
searching scale 1 Z rot 2.7
searching scale 1 Z rot 2.9
searching scale 1 Z rot 3.2
searching scale 1 Z rot 3.4
searching scale 1 Z rot 3.7
searching scale 1 Z rot 3.9 global minimum found at slice 130.1, rotations (7.24, -2.82)
- final transformation (x=130.1, yr=7.242, zr=-2.824):
- 0.99082 0.04928 0.12591 -20.92961;
- -0.04888 0.99879 -0.00621 28.21745;
- -0.12606 0.00000 0.99202 28.33638;
- 0.00000 0.00000 0.00000 1.00000;
- updating x range to be [126, 130] in xformed coordinates
- best xformed slice 128
- cc center is found at 128 107 117
- eigenvectors:
- -0.00025 -0.00862 0.99996;
- -0.02204 -0.99972 -0.00862;
- 0.99976 -0.02204 0.00006;
- error in mid anterior detected - correcting...
- writing aseg with callosum to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aseg.auto.mgz...
- corpus callosum segmentation took 2.3 minutes
- #--------------------------------------
- #@# Merge ASeg Sat Oct 7 23:22:48 CEST 2017
- cp aseg.auto.mgz aseg.presurf.mgz
- #--------------------------------------------
- #@# Intensity Normalization2 Sat Oct 7 23:22:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- using segmentation for initial intensity normalization
- using MR volume brainmask.mgz to mask input volume...
- reading from norm.mgz...
- Reading aseg aseg.presurf.mgz
- normalizing image...
- processing with aseg
- removing outliers in the aseg WM...
- 852 control points removed
- Building bias image
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 0...
- Smoothing with sigma 8
- Applying bias correction
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 109
- gm peak at 49 (49), valley at 0 (-1)
- csf peak at 24, setting threshold to 40
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 52 (52), valley at 0 (-1)
- csf peak at 26, setting threshold to 43
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to brain.mgz
- 3D bias adjustment took 3 minutes and 4 seconds.
- #--------------------------------------------
- #@# Mask BFS Sat Oct 7 23:25:54 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz
- threshold mask volume at 5
- DoAbs = 0
- Found 1515987 voxels in mask (pct= 9.04)
- Writing masked volume to brain.finalsurfs.mgz...done.
- #--------------------------------------------
- #@# WM Segmentation Sat Oct 7 23:25:56 CEST 2017
- mri_segment -mprage brain.mgz wm.seg.mgz
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- computing class statistics for intensity windows...
- WM (105.0): 106.2 +- 5.1 [79.0 --> 125.0]
- GM (67.0) : 65.3 +- 11.2 [30.0 --> 95.0]
- setting bottom of white matter range to 76.5
- setting top of gray matter range to 87.7
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- using local geometry to label remaining ambiguous voxels...
- reclassifying voxels using Gaussian border classifier...
- removing voxels with positive offset direction...
- smoothing T1 volume with sigma = 0.250
- removing 1-dimensional structures...
- 6362 sparsely connected voxels removed...
- thickening thin strands....
- 20 segments, 4367 filled
- 1444 bright non-wm voxels segmented.
- 2294 diagonally connected voxels added...
- white matter segmentation took 1.4 minutes
- writing output to wm.seg.mgz...
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz
- preserving editing changes in input volume...
- auto filling took 0.64 minutes
- reading wm segmentation from wm.seg.mgz...
- 864 voxels added to wm to prevent paths from MTL structures to cortex
- 3387 additional wm voxels added
- 0 additional wm voxels added
- SEG EDIT: 73258 voxels turned on, 21372 voxels turned off.
- propagating editing to output volume from wm.seg.mgz
- 115,126,128 old 110 new 110
- 115,126,128 old 110 new 110
- writing edited volume to wm.asegedit.mgz....
- mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz
- Iteration Number : 1
- pass 1 (xy+): 22 found - 22 modified | TOTAL: 22
- pass 2 (xy+): 0 found - 22 modified | TOTAL: 22
- pass 1 (xy-): 28 found - 28 modified | TOTAL: 50
- pass 2 (xy-): 0 found - 28 modified | TOTAL: 50
- pass 1 (yz+): 26 found - 26 modified | TOTAL: 76
- pass 2 (yz+): 0 found - 26 modified | TOTAL: 76
- pass 1 (yz-): 34 found - 34 modified | TOTAL: 110
- pass 2 (yz-): 0 found - 34 modified | TOTAL: 110
- pass 1 (xz+): 26 found - 26 modified | TOTAL: 136
- pass 2 (xz+): 0 found - 26 modified | TOTAL: 136
- pass 1 (xz-): 18 found - 18 modified | TOTAL: 154
- pass 2 (xz-): 0 found - 18 modified | TOTAL: 154
- Iteration Number : 1
- pass 1 (+++): 20 found - 20 modified | TOTAL: 20
- pass 2 (+++): 0 found - 20 modified | TOTAL: 20
- pass 1 (+++): 13 found - 13 modified | TOTAL: 33
- pass 2 (+++): 0 found - 13 modified | TOTAL: 33
- pass 1 (+++): 24 found - 24 modified | TOTAL: 57
- pass 2 (+++): 0 found - 24 modified | TOTAL: 57
- pass 1 (+++): 14 found - 14 modified | TOTAL: 71
- pass 2 (+++): 0 found - 14 modified | TOTAL: 71
- Iteration Number : 1
- pass 1 (++): 115 found - 115 modified | TOTAL: 115
- pass 2 (++): 0 found - 115 modified | TOTAL: 115
- pass 1 (+-): 149 found - 149 modified | TOTAL: 264
- pass 2 (+-): 1 found - 150 modified | TOTAL: 265
- pass 3 (+-): 0 found - 150 modified | TOTAL: 265
- pass 1 (--): 91 found - 91 modified | TOTAL: 356
- pass 2 (--): 0 found - 91 modified | TOTAL: 356
- pass 1 (-+): 164 found - 164 modified | TOTAL: 520
- pass 2 (-+): 0 found - 164 modified | TOTAL: 520
- Iteration Number : 2
- pass 1 (xy+): 2 found - 2 modified | TOTAL: 2
- pass 2 (xy+): 0 found - 2 modified | TOTAL: 2
- pass 1 (xy-): 10 found - 10 modified | TOTAL: 12
- pass 2 (xy-): 0 found - 10 modified | TOTAL: 12
- pass 1 (yz+): 5 found - 5 modified | TOTAL: 17
- pass 2 (yz+): 0 found - 5 modified | TOTAL: 17
- pass 1 (yz-): 5 found - 5 modified | TOTAL: 22
- pass 2 (yz-): 0 found - 5 modified | TOTAL: 22
- pass 1 (xz+): 2 found - 2 modified | TOTAL: 24
- pass 2 (xz+): 0 found - 2 modified | TOTAL: 24
- pass 1 (xz-): 2 found - 2 modified | TOTAL: 26
- pass 2 (xz-): 0 found - 2 modified | TOTAL: 26
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 1 found - 1 modified | TOTAL: 2
- pass 2 (+-): 0 found - 1 modified | TOTAL: 2
- pass 1 (--): 2 found - 2 modified | TOTAL: 4
- pass 2 (--): 0 found - 2 modified | TOTAL: 4
- pass 1 (-+): 1 found - 1 modified | TOTAL: 5
- pass 2 (-+): 0 found - 1 modified | TOTAL: 5
- Iteration Number : 3
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 1 found - 1 modified | TOTAL: 1
- pass 2 (xy-): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 1
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 777 (out of 447360: 0.173686)
- binarizing input wm segmentation...
- Ambiguous edge configurations...
- mri_pretess done
- #--------------------------------------------
- #@# Fill Sat Oct 7 23:28:01 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz
- logging cutting plane coordinates to ../scripts/ponscc.cut.log...
- INFO: Using transforms/talairach.lta and its offset for Talairach volume ...
- using segmentation aseg.auto_noCCseg.mgz...
- reading input volume...done.
- searching for cutting planes...voxel to talairach voxel transform
- 1.10931 0.07106 0.15193 -45.25932;
- -0.09651 1.17138 0.13331 -25.96977;
- -0.17054 -0.11498 0.97399 26.46217;
- 0.00000 0.00000 0.00000 1.00000;
- voxel to talairach voxel transform
- 1.10931 0.07106 0.15193 -45.25932;
- -0.09651 1.17138 0.13331 -25.96977;
- -0.17054 -0.11498 0.97399 26.46217;
- 0.00000 0.00000 0.00000 1.00000;
- reading segmented volume aseg.auto_noCCseg.mgz...
- Looking for area (min, max) = (350, 1400)
- area[0] = 1280 (min = 350, max = 1400), aspect = 0.48 (min = 0.10, max = 0.75)
- no need to search
- using seed (124, 107, 113), TAL = (4.0, -15.0, 21.0)
- talairach voxel to voxel transform
- 0.87612 -0.06568 -0.12767 41.32552;
- 0.05400 0.83833 -0.12317 27.47443;
- 0.15978 0.08746 0.98981 -16.68959;
- 0.00000 0.00000 0.00000 1.00000;
- segmentation indicates cc at (124, 107, 113) --> (4.0, -15.0, 21.0)
- done.
- writing output to filled.mgz...
- filling took 0.7 minutes
- talairach cc position changed to (4.00, -15.00, 21.00)
- Erasing brainstem...done.
- seed_search_size = 9, min_neighbors = 5
- search rh wm seed point around talairach space:(22.00, -15.00, 21.00) SRC: (112.74, 108.98, 121.45)
- search lh wm seed point around talairach space (-14.00, -15.00, 21.00), SRC: (144.28, 110.93, 127.21)
- compute mri_fill using aseg
- Erasing Brain Stem and Cerebellum ...
- Define left and right masks using aseg:
- Building Voronoi diagram ...
- Using the Voronoi diagram to separate WM into two hemispheres ...
- Find the largest connected component for each hemisphere ...
- #--------------------------------------------
- #@# Tessellate lh Sat Oct 7 23:28:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz
- Iteration Number : 1
- pass 1 (xy+): 1 found - 1 modified | TOTAL: 1
- pass 2 (xy+): 0 found - 1 modified | TOTAL: 1
- pass 1 (xy-): 2 found - 2 modified | TOTAL: 3
- pass 2 (xy-): 0 found - 2 modified | TOTAL: 3
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 4
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 4
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 4
- pass 1 (xz+): 2 found - 2 modified | TOTAL: 6
- pass 2 (xz+): 0 found - 2 modified | TOTAL: 6
- pass 1 (xz-): 2 found - 2 modified | TOTAL: 8
- pass 2 (xz-): 0 found - 2 modified | TOTAL: 8
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 1
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 0 found - 0 modified | TOTAL: 1
- pass 1 (--): 1 found - 1 modified | TOTAL: 2
- pass 2 (--): 0 found - 1 modified | TOTAL: 2
- pass 1 (-+): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 1
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 1 found - 1 modified | TOTAL: 1
- pass 2 (+-): 0 found - 1 modified | TOTAL: 1
- pass 1 (--): 0 found - 0 modified | TOTAL: 1
- pass 1 (-+): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 3
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 12 (out of 220021: 0.005454)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 50: 1397 vertices, 1507 faces
- slice 60: 6680 vertices, 6910 faces
- slice 70: 13859 vertices, 14163 faces
- slice 80: 21930 vertices, 22245 faces
- slice 90: 30731 vertices, 31081 faces
- slice 100: 39728 vertices, 40100 faces
- slice 110: 50179 vertices, 50608 faces
- slice 120: 61240 vertices, 61737 faces
- slice 130: 71678 vertices, 72114 faces
- slice 140: 80784 vertices, 81194 faces
- slice 150: 89991 vertices, 90411 faces
- slice 160: 96240 vertices, 96595 faces
- slice 170: 103015 vertices, 103412 faces
- slice 180: 109274 vertices, 109617 faces
- slice 190: 115220 vertices, 115561 faces
- slice 200: 119343 vertices, 119635 faces
- slice 210: 122133 vertices, 122301 faces
- slice 220: 122160 vertices, 122314 faces
- slice 230: 122160 vertices, 122314 faces
- slice 240: 122160 vertices, 122314 faces
- slice 250: 122160 vertices, 122314 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/lh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess255.mgz
- mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix
- counting number of connected components...
- 122160 voxel in cpt #1: X=-154 [v=122160,e=366942,f=244628] located at (-28.178749, -6.776727, 12.996062)
- For the whole surface: X=-154 [v=122160,e=366942,f=244628]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Tessellate rh Sat Oct 7 23:28:50 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz
- Iteration Number : 1
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 1 found - 1 modified | TOTAL: 1
- pass 2 (xy-): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz+): 2 found - 2 modified | TOTAL: 3
- pass 2 (yz+): 0 found - 2 modified | TOTAL: 3
- pass 1 (yz-): 4 found - 4 modified | TOTAL: 7
- pass 2 (yz-): 0 found - 4 modified | TOTAL: 7
- pass 1 (xz+): 2 found - 2 modified | TOTAL: 9
- pass 2 (xz+): 0 found - 2 modified | TOTAL: 9
- pass 1 (xz-): 1 found - 1 modified | TOTAL: 10
- pass 2 (xz-): 0 found - 1 modified | TOTAL: 10
- Iteration Number : 1
- pass 1 (+++): 2 found - 2 modified | TOTAL: 2
- pass 2 (+++): 0 found - 2 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 1
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 0 found - 0 modified | TOTAL: 1
- pass 1 (--): 1 found - 1 modified | TOTAL: 2
- pass 2 (--): 0 found - 1 modified | TOTAL: 2
- pass 1 (-+): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 1
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 15 (out of 211043: 0.007108)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 50: 2217 vertices, 2398 faces
- slice 60: 8503 vertices, 8795 faces
- slice 70: 16281 vertices, 16638 faces
- slice 80: 25956 vertices, 26320 faces
- slice 90: 34652 vertices, 35087 faces
- slice 100: 44954 vertices, 45422 faces
- slice 110: 55487 vertices, 55943 faces
- slice 120: 66037 vertices, 66499 faces
- slice 130: 75013 vertices, 75444 faces
- slice 140: 83842 vertices, 84270 faces
- slice 150: 90294 vertices, 90658 faces
- slice 160: 96013 vertices, 96410 faces
- slice 170: 102380 vertices, 102771 faces
- slice 180: 108298 vertices, 108657 faces
- slice 190: 113462 vertices, 113802 faces
- slice 200: 117103 vertices, 117409 faces
- slice 210: 119050 vertices, 119230 faces
- slice 220: 119062 vertices, 119236 faces
- slice 230: 119062 vertices, 119236 faces
- slice 240: 119062 vertices, 119236 faces
- slice 250: 119062 vertices, 119236 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/rh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess127.mgz
- mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix
- counting number of connected components...
- 119062 voxel in cpt #1: X=-174 [v=119062,e=357708,f=238472] located at (23.991585, -11.382288, 16.188221)
- For the whole surface: X=-174 [v=119062,e=357708,f=238472]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Smooth1 lh Sat Oct 7 23:28:56 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- #--------------------------------------------
- #@# Smooth1 rh Sat Oct 7 23:28:56 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- Waiting for PID 6846 of (6846 6849) to complete...
- Waiting for PID 6849 of (6846 6849) to complete...
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (6846 6849) completed and logs appended.
- #--------------------------------------------
- #@# Inflation1 lh Sat Oct 7 23:29:02 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- #--------------------------------------------
- #@# Inflation1 rh Sat Oct 7 23:29:02 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Waiting for PID 6894 of (6894 6897) to complete...
- Waiting for PID 6897 of (6894 6897) to complete...
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- Not saving sulc
- Reading ../surf/lh.smoothwm.nofix
- avg radius = 46.7 mm, total surface area = 65129 mm^2
- writing inflated surface to ../surf/lh.inflated.nofix
- inflation took 0.6 minutes
-
step 000: RMS=0.164 (target=0.015)
step 005: RMS=0.128 (target=0.015)
step 010: RMS=0.102 (target=0.015)
step 015: RMS=0.091 (target=0.015)
step 020: RMS=0.083 (target=0.015)
step 025: RMS=0.079 (target=0.015)
step 030: RMS=0.074 (target=0.015)
step 035: RMS=0.070 (target=0.015)
step 040: RMS=0.066 (target=0.015)
step 045: RMS=0.065 (target=0.015)
step 050: RMS=0.063 (target=0.015)
step 055: RMS=0.062 (target=0.015)
step 060: RMS=0.062 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 38.760107
- mris_inflate stimesec 0.090986
- mris_inflate ru_maxrss 179396
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 26390
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 8600
- mris_inflate ru_oublock 8616
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 1980
- mris_inflate ru_nivcsw 2995
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Not saving sulc
- Reading ../surf/rh.smoothwm.nofix
- avg radius = 47.0 mm, total surface area = 63531 mm^2
- writing inflated surface to ../surf/rh.inflated.nofix
- inflation took 0.6 minutes
-
step 000: RMS=0.168 (target=0.015)
step 005: RMS=0.132 (target=0.015)
step 010: RMS=0.107 (target=0.015)
step 015: RMS=0.096 (target=0.015)
step 020: RMS=0.089 (target=0.015)
step 025: RMS=0.082 (target=0.015)
step 030: RMS=0.077 (target=0.015)
step 035: RMS=0.074 (target=0.015)
step 040: RMS=0.072 (target=0.015)
step 045: RMS=0.071 (target=0.015)
step 050: RMS=0.070 (target=0.015)
step 055: RMS=0.068 (target=0.015)
step 060: RMS=0.067 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 37.863243
- mris_inflate stimesec 0.076988
- mris_inflate ru_maxrss 175172
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 25844
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 8384
- mris_inflate ru_oublock 8400
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 1997
- mris_inflate ru_nivcsw 2970
- PIDs (6894 6897) completed and logs appended.
- #--------------------------------------------
- #@# QSphere lh Sat Oct 7 23:29:40 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- #--------------------------------------------
- #@# QSphere rh Sat Oct 7 23:29:40 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- Waiting for PID 6960 of (6960 6964) to complete...
- Waiting for PID 6964 of (6960 6964) to complete...
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 1.01 +- 0.63 (0.00-->6.87) (max @ vno 85277 --> 85278)
- face area 0.03 +- 0.03 (-0.06-->0.59)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.310...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.274, avgs=0
- 005/300: dt: 0.9000, rms radial error=177.018, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.467, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.744, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.916, avgs=0
- 025/300: dt: 0.9000, rms radial error=174.026, avgs=0
- 030/300: dt: 0.9000, rms radial error=173.105, avgs=0
- 035/300: dt: 0.9000, rms radial error=172.167, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.221, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.273, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.325, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.379, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.436, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.497, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.563, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.634, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.710, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.794, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.884, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.979, avgs=0
- 100/300: dt: 0.9000, rms radial error=160.079, avgs=0
- 105/300: dt: 0.9000, rms radial error=159.184, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.294, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.408, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.528, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.652, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.781, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.914, avgs=0
- 140/300: dt: 0.9000, rms radial error=153.052, avgs=0
- 145/300: dt: 0.9000, rms radial error=152.195, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.342, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.494, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.651, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.812, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.978, avgs=0
- 175/300: dt: 0.9000, rms radial error=147.148, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.323, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.502, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.686, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.874, avgs=0
- 200/300: dt: 0.9000, rms radial error=143.067, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.264, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.466, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.673, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.883, avgs=0
- 225/300: dt: 0.9000, rms radial error=139.098, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.318, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.541, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.769, avgs=0
- 245/300: dt: 0.9000, rms radial error=136.001, avgs=0
- 250/300: dt: 0.9000, rms radial error=135.238, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.478, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.723, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.972, avgs=0
- 270/300: dt: 0.9000, rms radial error=132.226, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.483, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.745, avgs=0
- 285/300: dt: 0.9000, rms radial error=130.010, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.280, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.553, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.830, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 14342.00
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00015
- epoch 2 (K=40.0), pass 1, starting sse = 2478.16
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00014
- epoch 3 (K=160.0), pass 1, starting sse = 303.08
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.08/11 = 0.00757
- epoch 4 (K=640.0), pass 1, starting sse = 29.41
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.07/12 = 0.00606
- final distance error %28.54
- writing spherical brain to ../surf/lh.qsphere.nofix
- spherical transformation took 0.06 hours
- mris_sphere utimesec 228.165313
- mris_sphere stimesec 0.210967
- mris_sphere ru_maxrss 179600
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 26441
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 8600
- mris_sphere ru_oublock 8640
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 8113
- mris_sphere ru_nivcsw 15139
- FSRUNTIME@ mris_sphere 0.0619 hours 1 threads
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 1.02 +- 0.68 (0.00-->10.65) (max @ vno 71148 --> 71149)
- face area 0.03 +- 0.04 (-0.29-->0.51)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.311...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.134, avgs=0
- 005/300: dt: 0.9000, rms radial error=176.878, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.328, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.605, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.774, avgs=0
- 025/300: dt: 0.9000, rms radial error=173.886, avgs=0
- 030/300: dt: 0.9000, rms radial error=172.969, avgs=0
- 035/300: dt: 0.9000, rms radial error=172.036, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.096, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.152, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.210, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.271, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.335, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.402, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.475, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.551, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.632, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.718, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.809, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.904, avgs=0
- 100/300: dt: 0.9000, rms radial error=160.003, avgs=0
- 105/300: dt: 0.9000, rms radial error=159.107, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.216, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.329, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.447, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.570, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.698, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.830, avgs=0
- 140/300: dt: 0.9000, rms radial error=152.966, avgs=0
- 145/300: dt: 0.9000, rms radial error=152.108, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.254, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.404, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.559, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.718, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.882, avgs=0
- 175/300: dt: 0.9000, rms radial error=147.051, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.224, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.402, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.584, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.770, avgs=0
- 200/300: dt: 0.9000, rms radial error=142.961, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.157, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.356, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.560, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.769, avgs=0
- 225/300: dt: 0.9000, rms radial error=138.982, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.199, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.420, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.646, avgs=0
- 245/300: dt: 0.9000, rms radial error=135.876, avgs=0
- 250/300: dt: 0.9000, rms radial error=135.110, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.349, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.592, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.839, avgs=0
- 270/300: dt: 0.9000, rms radial error=132.090, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.345, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.605, avgs=0
- 285/300: dt: 0.9000, rms radial error=129.869, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.136, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.408, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.684, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 13987.36
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00013
- epoch 2 (K=40.0), pass 1, starting sse = 2447.28
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00004
- epoch 3 (K=160.0), pass 1, starting sse = 302.64
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.03/10 = 0.00339
- epoch 4 (K=640.0), pass 1, starting sse = 32.13
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.05/10 = 0.00485
- final distance error %31.60
- writing spherical brain to ../surf/rh.qsphere.nofix
- spherical transformation took 0.06 hours
- mris_sphere utimesec 213.480546
- mris_sphere stimesec 0.155976
- mris_sphere ru_maxrss 175368
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 25379
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 8384
- mris_sphere ru_oublock 8424
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 7820
- mris_sphere ru_nivcsw 15228
- FSRUNTIME@ mris_sphere 0.0593 hours 1 threads
- PIDs (6960 6964) completed and logs appended.
- #--------------------------------------------
- #@# Fix Topology Copy lh Sat Oct 7 23:33:23 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- cp ../surf/lh.orig.nofix ../surf/lh.orig
- cp ../surf/lh.inflated.nofix ../surf/lh.inflated
- #--------------------------------------------
- #@# Fix Topology Copy rh Sat Oct 7 23:33:23 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- cp ../surf/rh.orig.nofix ../surf/rh.orig
- cp ../surf/rh.inflated.nofix ../surf/rh.inflated
- #@# Fix Topology lh Sat Oct 7 23:33:23 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051180 lh
- #@# Fix Topology rh Sat Oct 7 23:33:23 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051180 rh
- Waiting for PID 7184 of (7184 7187) to complete...
- Waiting for PID 7187 of (7184 7187) to complete...
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051180 lh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-154 (nv=122160, nf=244628, ne=366942, g=78)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 10 iterations
- marking ambiguous vertices...
- 11806 ambiguous faces found in tessellation
- segmenting defects...
- 100 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- -merging segment 28 into 26
- -merging segment 43 into 42
- 98 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.5146 (-4.7573)
- -vertex loglikelihood: -6.6765 (-3.3382)
- -normal dot loglikelihood: -3.6223 (-3.6223)
- -quad curv loglikelihood: -6.0606 (-3.0303)
- Total Loglikelihood : -25.8740
- CORRECTING DEFECT 0 (vertices=23, convex hull=40, v0=24)
- After retessellation of defect 0 (v0=24), euler #=-96 (114967,342028,226965) : difference with theory (-95) = 1
- CORRECTING DEFECT 1 (vertices=5, convex hull=25, v0=74)
- After retessellation of defect 1 (v0=74), euler #=-95 (114967,342033,226971) : difference with theory (-94) = 1
- CORRECTING DEFECT 2 (vertices=6, convex hull=30, v0=252)
- After retessellation of defect 2 (v0=252), euler #=-94 (114968,342046,226984) : difference with theory (-93) = 1
- CORRECTING DEFECT 3 (vertices=89, convex hull=101, v0=497)
- After retessellation of defect 3 (v0=497), euler #=-93 (114993,342166,227080) : difference with theory (-92) = 1
- CORRECTING DEFECT 4 (vertices=56, convex hull=79, v0=1313)
- After retessellation of defect 4 (v0=1313), euler #=-92 (115011,342256,227153) : difference with theory (-91) = 1
- CORRECTING DEFECT 5 (vertices=33, convex hull=73, v0=1533)
- After retessellation of defect 5 (v0=1533), euler #=-91 (115022,342318,227205) : difference with theory (-90) = 1
- CORRECTING DEFECT 6 (vertices=38, convex hull=26, v0=2202)
- After retessellation of defect 6 (v0=2202), euler #=-90 (115024,342336,227222) : difference with theory (-89) = 1
- CORRECTING DEFECT 7 (vertices=14, convex hull=32, v0=4306)
- After retessellation of defect 7 (v0=4306), euler #=-89 (115025,342350,227236) : difference with theory (-88) = 1
- CORRECTING DEFECT 8 (vertices=97, convex hull=136, v0=6009)
- After retessellation of defect 8 (v0=6009), euler #=-88 (115075,342569,227406) : difference with theory (-87) = 1
- CORRECTING DEFECT 9 (vertices=25, convex hull=80, v0=6659)
- After retessellation of defect 9 (v0=6659), euler #=-87 (115088,342636,227461) : difference with theory (-86) = 1
- CORRECTING DEFECT 10 (vertices=48, convex hull=74, v0=7144)
- After retessellation of defect 10 (v0=7144), euler #=-86 (115100,342701,227515) : difference with theory (-85) = 1
- CORRECTING DEFECT 11 (vertices=76, convex hull=101, v0=7990)
- After retessellation of defect 11 (v0=7990), euler #=-85 (115128,342833,227620) : difference with theory (-84) = 1
- CORRECTING DEFECT 12 (vertices=44, convex hull=56, v0=8640)
- After retessellation of defect 12 (v0=8640), euler #=-84 (115137,342878,227657) : difference with theory (-83) = 1
- CORRECTING DEFECT 13 (vertices=48, convex hull=40, v0=10572)
- After retessellation of defect 13 (v0=10572), euler #=-83 (115143,342908,227682) : difference with theory (-82) = 1
- CORRECTING DEFECT 14 (vertices=310, convex hull=241, v0=11064)
- After retessellation of defect 14 (v0=11064), euler #=-82 (115262,343379,228035) : difference with theory (-81) = 1
- CORRECTING DEFECT 15 (vertices=53, convex hull=48, v0=12573)
- After retessellation of defect 15 (v0=12573), euler #=-81 (115268,343417,228068) : difference with theory (-80) = 1
- CORRECTING DEFECT 16 (vertices=229, convex hull=157, v0=13982)
- After retessellation of defect 16 (v0=13982), euler #=-80 (115333,343691,228278) : difference with theory (-79) = 1
- CORRECTING DEFECT 17 (vertices=24, convex hull=63, v0=15442)
- After retessellation of defect 17 (v0=15442), euler #=-79 (115342,343742,228321) : difference with theory (-78) = 1
- CORRECTING DEFECT 18 (vertices=17, convex hull=42, v0=16843)
- After retessellation of defect 18 (v0=16843), euler #=-78 (115348,343777,228351) : difference with theory (-77) = 1
- CORRECTING DEFECT 19 (vertices=78, convex hull=78, v0=17090)
- After retessellation of defect 19 (v0=17090), euler #=-77 (115365,343861,228419) : difference with theory (-76) = 1
- CORRECTING DEFECT 20 (vertices=149, convex hull=133, v0=17909)
- After retessellation of defect 20 (v0=17909), euler #=-76 (115411,344052,228565) : difference with theory (-75) = 1
- CORRECTING DEFECT 21 (vertices=51, convex hull=89, v0=19161)
- After retessellation of defect 21 (v0=19161), euler #=-75 (115435,344161,228651) : difference with theory (-74) = 1
- CORRECTING DEFECT 22 (vertices=31, convex hull=27, v0=21355)
- After retessellation of defect 22 (v0=21355), euler #=-74 (115437,344176,228665) : difference with theory (-73) = 1
- CORRECTING DEFECT 23 (vertices=209, convex hull=161, v0=22721)
- After retessellation of defect 23 (v0=22721), euler #=-73 (115465,344340,228802) : difference with theory (-72) = 1
- CORRECTING DEFECT 24 (vertices=36, convex hull=24, v0=24940)
- After retessellation of defect 24 (v0=24940), euler #=-72 (115468,344357,228817) : difference with theory (-71) = 1
- CORRECTING DEFECT 25 (vertices=26, convex hull=70, v0=27859)
- After retessellation of defect 25 (v0=27859), euler #=-71 (115484,344436,228881) : difference with theory (-70) = 1
- CORRECTING DEFECT 26 (vertices=206, convex hull=162, v0=30902)
- After retessellation of defect 26 (v0=30902), euler #=-69 (115554,344722,229099) : difference with theory (-69) = 0
- CORRECTING DEFECT 27 (vertices=27, convex hull=69, v0=31687)
- After retessellation of defect 27 (v0=31687), euler #=-68 (115567,344788,229153) : difference with theory (-68) = 0
- CORRECTING DEFECT 28 (vertices=35, convex hull=74, v0=35120)
- After retessellation of defect 28 (v0=35120), euler #=-67 (115582,344858,229209) : difference with theory (-67) = 0
- CORRECTING DEFECT 29 (vertices=308, convex hull=198, v0=35127)
- After retessellation of defect 29 (v0=35127), euler #=-67 (115686,345289,229536) : difference with theory (-66) = 1
- CORRECTING DEFECT 30 (vertices=9, convex hull=28, v0=35822)
- After retessellation of defect 30 (v0=35822), euler #=-66 (115689,345305,229550) : difference with theory (-65) = 1
- CORRECTING DEFECT 31 (vertices=112, convex hull=95, v0=38035)
- After retessellation of defect 31 (v0=38035), euler #=-65 (115716,345426,229645) : difference with theory (-64) = 1
- CORRECTING DEFECT 32 (vertices=9, convex hull=21, v0=40458)
- After retessellation of defect 32 (v0=40458), euler #=-64 (115718,345435,229653) : difference with theory (-63) = 1
- CORRECTING DEFECT 33 (vertices=398, convex hull=195, v0=42517)
- After retessellation of defect 33 (v0=42517), euler #=-63 (115751,345626,229812) : difference with theory (-62) = 1
- CORRECTING DEFECT 34 (vertices=171, convex hull=142, v0=42774)
- After retessellation of defect 34 (v0=42774), euler #=-62 (115811,345872,229999) : difference with theory (-61) = 1
- CORRECTING DEFECT 35 (vertices=8, convex hull=22, v0=43409)
- After retessellation of defect 35 (v0=43409), euler #=-61 (115815,345888,230012) : difference with theory (-60) = 1
- CORRECTING DEFECT 36 (vertices=6, convex hull=32, v0=45465)
- After retessellation of defect 36 (v0=45465), euler #=-60 (115818,345905,230027) : difference with theory (-59) = 1
- CORRECTING DEFECT 37 (vertices=35, convex hull=60, v0=45808)
- After retessellation of defect 37 (v0=45808), euler #=-59 (115835,345983,230089) : difference with theory (-58) = 1
- CORRECTING DEFECT 38 (vertices=82, convex hull=91, v0=46801)
- After retessellation of defect 38 (v0=46801), euler #=-58 (115874,346143,230211) : difference with theory (-57) = 1
- CORRECTING DEFECT 39 (vertices=62, convex hull=74, v0=46831)
- After retessellation of defect 39 (v0=46831), euler #=-57 (115901,346255,230297) : difference with theory (-56) = 1
- CORRECTING DEFECT 40 (vertices=83, convex hull=68, v0=46922)
- After retessellation of defect 40 (v0=46922), euler #=-56 (115931,346379,230392) : difference with theory (-55) = 1
- CORRECTING DEFECT 41 (vertices=57, convex hull=119, v0=50698)
- After retessellation of defect 41 (v0=50698), euler #=-54 (115967,346537,230516) : difference with theory (-54) = 0
- CORRECTING DEFECT 42 (vertices=94, convex hull=72, v0=51298)
- After retessellation of defect 42 (v0=51298), euler #=-53 (115992,346648,230603) : difference with theory (-53) = 0
- CORRECTING DEFECT 43 (vertices=49, convex hull=69, v0=55924)
- After retessellation of defect 43 (v0=55924), euler #=-52 (116017,346751,230682) : difference with theory (-52) = 0
- CORRECTING DEFECT 44 (vertices=92, convex hull=123, v0=57943)
- After retessellation of defect 44 (v0=57943), euler #=-51 (116025,346829,230753) : difference with theory (-51) = 0
- CORRECTING DEFECT 45 (vertices=85, convex hull=70, v0=58741)
- After retessellation of defect 45 (v0=58741), euler #=-50 (116057,346955,230848) : difference with theory (-50) = 0
- CORRECTING DEFECT 46 (vertices=41, convex hull=39, v0=59705)
- After retessellation of defect 46 (v0=59705), euler #=-49 (116064,346989,230876) : difference with theory (-49) = 0
- CORRECTING DEFECT 47 (vertices=23, convex hull=27, v0=60278)
- After retessellation of defect 47 (v0=60278), euler #=-48 (116069,347012,230895) : difference with theory (-48) = 0
- CORRECTING DEFECT 48 (vertices=75, convex hull=86, v0=64148)
- After retessellation of defect 48 (v0=64148), euler #=-47 (116104,347156,231005) : difference with theory (-47) = 0
- CORRECTING DEFECT 49 (vertices=33, convex hull=30, v0=66813)
- After retessellation of defect 49 (v0=66813), euler #=-46 (116107,347175,231022) : difference with theory (-46) = 0
- CORRECTING DEFECT 50 (vertices=181, convex hull=143, v0=67678)
- After retessellation of defect 50 (v0=67678), euler #=-45 (116138,347335,231152) : difference with theory (-45) = 0
- CORRECTING DEFECT 51 (vertices=113, convex hull=120, v0=70255)
- After retessellation of defect 51 (v0=70255), euler #=-44 (116179,347512,231289) : difference with theory (-44) = 0
- CORRECTING DEFECT 52 (vertices=57, convex hull=69, v0=70372)
- After retessellation of defect 52 (v0=70372), euler #=-43 (116206,347622,231373) : difference with theory (-43) = 0
- CORRECTING DEFECT 53 (vertices=10, convex hull=26, v0=71102)
- After retessellation of defect 53 (v0=71102), euler #=-42 (116208,347635,231385) : difference with theory (-42) = 0
- CORRECTING DEFECT 54 (vertices=37, convex hull=31, v0=72551)
- After retessellation of defect 54 (v0=72551), euler #=-41 (116212,347657,231404) : difference with theory (-41) = 0
- CORRECTING DEFECT 55 (vertices=881, convex hull=219, v0=73204)
- After retessellation of defect 55 (v0=73204), euler #=-40 (116257,347899,231602) : difference with theory (-40) = 0
- CORRECTING DEFECT 56 (vertices=137, convex hull=113, v0=73651)
- After retessellation of defect 56 (v0=73651), euler #=-39 (116312,348116,231765) : difference with theory (-39) = 0
- CORRECTING DEFECT 57 (vertices=60, convex hull=83, v0=73975)
- After retessellation of defect 57 (v0=73975), euler #=-38 (116345,348248,231865) : difference with theory (-38) = 0
- CORRECTING DEFECT 58 (vertices=30, convex hull=55, v0=74239)
- After retessellation of defect 58 (v0=74239), euler #=-37 (116358,348307,231912) : difference with theory (-37) = 0
- CORRECTING DEFECT 59 (vertices=61, convex hull=38, v0=77999)
- After retessellation of defect 59 (v0=77999), euler #=-36 (116365,348345,231944) : difference with theory (-36) = 0
- CORRECTING DEFECT 60 (vertices=5, convex hull=16, v0=79087)
- After retessellation of defect 60 (v0=79087), euler #=-35 (116366,348352,231951) : difference with theory (-35) = 0
- CORRECTING DEFECT 61 (vertices=6, convex hull=13, v0=80606)
- After retessellation of defect 61 (v0=80606), euler #=-34 (116369,348362,231959) : difference with theory (-34) = 0
- CORRECTING DEFECT 62 (vertices=26, convex hull=47, v0=80761)
- After retessellation of defect 62 (v0=80761), euler #=-33 (116379,348410,231998) : difference with theory (-33) = 0
- CORRECTING DEFECT 63 (vertices=6, convex hull=25, v0=81267)
- After retessellation of defect 63 (v0=81267), euler #=-32 (116380,348418,232006) : difference with theory (-32) = 0
- CORRECTING DEFECT 64 (vertices=9, convex hull=22, v0=82199)
- After retessellation of defect 64 (v0=82199), euler #=-31 (116382,348431,232018) : difference with theory (-31) = 0
- CORRECTING DEFECT 65 (vertices=116, convex hull=71, v0=82369)
- After retessellation of defect 65 (v0=82369), euler #=-30 (116407,348537,232100) : difference with theory (-30) = 0
- CORRECTING DEFECT 66 (vertices=6, convex hull=29, v0=84470)
- After retessellation of defect 66 (v0=84470), euler #=-29 (116409,348550,232112) : difference with theory (-29) = 0
- CORRECTING DEFECT 67 (vertices=9, convex hull=24, v0=85108)
- After retessellation of defect 67 (v0=85108), euler #=-28 (116412,348567,232127) : difference with theory (-28) = 0
- CORRECTING DEFECT 68 (vertices=28, convex hull=50, v0=85790)
- After retessellation of defect 68 (v0=85790), euler #=-27 (116426,348628,232175) : difference with theory (-27) = 0
- CORRECTING DEFECT 69 (vertices=21, convex hull=45, v0=88098)
- After retessellation of defect 69 (v0=88098), euler #=-26 (116432,348663,232205) : difference with theory (-26) = 0
- CORRECTING DEFECT 70 (vertices=32, convex hull=65, v0=88761)
- After retessellation of defect 70 (v0=88761), euler #=-25 (116450,348745,232270) : difference with theory (-25) = 0
- CORRECTING DEFECT 71 (vertices=25, convex hull=62, v0=88849)
- After retessellation of defect 71 (v0=88849), euler #=-24 (116459,348795,232312) : difference with theory (-24) = 0
- CORRECTING DEFECT 72 (vertices=31, convex hull=68, v0=89163)
- After retessellation of defect 72 (v0=89163), euler #=-23 (116471,348860,232366) : difference with theory (-23) = 0
- CORRECTING DEFECT 73 (vertices=173, convex hull=83, v0=89914)
- After retessellation of defect 73 (v0=89914), euler #=-22 (116502,348994,232470) : difference with theory (-22) = 0
- CORRECTING DEFECT 74 (vertices=44, convex hull=30, v0=90690)
- After retessellation of defect 74 (v0=90690), euler #=-21 (116511,349031,232499) : difference with theory (-21) = 0
- CORRECTING DEFECT 75 (vertices=19, convex hull=42, v0=91185)
- After retessellation of defect 75 (v0=91185), euler #=-20 (116516,349061,232525) : difference with theory (-20) = 0
- CORRECTING DEFECT 76 (vertices=58, convex hull=33, v0=91771)
- After retessellation of defect 76 (v0=91771), euler #=-19 (116526,349101,232556) : difference with theory (-19) = 0
- CORRECTING DEFECT 77 (vertices=151, convex hull=87, v0=92517)
- After retessellation of defect 77 (v0=92517), euler #=-18 (116552,349224,232654) : difference with theory (-18) = 0
- CORRECTING DEFECT 78 (vertices=53, convex hull=79, v0=93076)
- After retessellation of defect 78 (v0=93076), euler #=-17 (116587,349359,232755) : difference with theory (-17) = 0
- CORRECTING DEFECT 79 (vertices=55, convex hull=73, v0=94160)
- After retessellation of defect 79 (v0=94160), euler #=-16 (116621,349490,232853) : difference with theory (-16) = 0
- CORRECTING DEFECT 80 (vertices=17, convex hull=42, v0=96695)
- After retessellation of defect 80 (v0=96695), euler #=-15 (116631,349533,232887) : difference with theory (-15) = 0
- CORRECTING DEFECT 81 (vertices=47, convex hull=75, v0=101420)
- After retessellation of defect 81 (v0=101420), euler #=-14 (116649,349619,232956) : difference with theory (-14) = 0
- CORRECTING DEFECT 82 (vertices=15, convex hull=25, v0=108149)
- After retessellation of defect 82 (v0=108149), euler #=-13 (116650,349629,232966) : difference with theory (-13) = 0
- CORRECTING DEFECT 83 (vertices=92, convex hull=23, v0=109274)
- After retessellation of defect 83 (v0=109274), euler #=-12 (116655,349652,232985) : difference with theory (-12) = 0
- CORRECTING DEFECT 84 (vertices=44, convex hull=58, v0=111706)
- After retessellation of defect 84 (v0=111706), euler #=-11 (116675,349734,233048) : difference with theory (-11) = 0
- CORRECTING DEFECT 85 (vertices=44, convex hull=71, v0=111828)
- After retessellation of defect 85 (v0=111828), euler #=-10 (116686,349797,233101) : difference with theory (-10) = 0
- CORRECTING DEFECT 86 (vertices=81, convex hull=90, v0=112644)
- After retessellation of defect 86 (v0=112644), euler #=-9 (116715,349928,233204) : difference with theory (-9) = 0
- CORRECTING DEFECT 87 (vertices=30, convex hull=52, v0=114409)
- After retessellation of defect 87 (v0=114409), euler #=-8 (116724,349973,233241) : difference with theory (-8) = 0
- CORRECTING DEFECT 88 (vertices=36, convex hull=22, v0=117624)
- After retessellation of defect 88 (v0=117624), euler #=-7 (116728,349991,233256) : difference with theory (-7) = 0
- CORRECTING DEFECT 89 (vertices=35, convex hull=45, v0=118063)
- After retessellation of defect 89 (v0=118063), euler #=-6 (116740,350045,233299) : difference with theory (-6) = 0
- CORRECTING DEFECT 90 (vertices=42, convex hull=34, v0=118264)
- After retessellation of defect 90 (v0=118264), euler #=-5 (116751,350088,233332) : difference with theory (-5) = 0
- CORRECTING DEFECT 91 (vertices=11, convex hull=35, v0=119185)
- After retessellation of defect 91 (v0=119185), euler #=-4 (116754,350106,233348) : difference with theory (-4) = 0
- CORRECTING DEFECT 92 (vertices=179, convex hull=97, v0=119294)
- After retessellation of defect 92 (v0=119294), euler #=-3 (116784,350243,233456) : difference with theory (-3) = 0
- CORRECTING DEFECT 93 (vertices=45, convex hull=48, v0=120354)
- After retessellation of defect 93 (v0=120354), euler #=-2 (116791,350279,233486) : difference with theory (-2) = 0
- CORRECTING DEFECT 94 (vertices=32, convex hull=36, v0=120540)
- After retessellation of defect 94 (v0=120540), euler #=-1 (116793,350298,233504) : difference with theory (-1) = 0
- CORRECTING DEFECT 95 (vertices=28, convex hull=58, v0=121009)
- After retessellation of defect 95 (v0=121009), euler #=0 (116806,350364,233558) : difference with theory (0) = 0
- CORRECTING DEFECT 96 (vertices=25, convex hull=52, v0=121491)
- After retessellation of defect 96 (v0=121491), euler #=1 (116817,350418,233602) : difference with theory (1) = 0
- CORRECTING DEFECT 97 (vertices=31, convex hull=67, v0=121771)
- After retessellation of defect 97 (v0=121771), euler #=2 (116827,350475,233650) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.90 +- 0.29 (0.05-->11.45) (max @ vno 67434 --> 75142)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.90 +- 0.29 (0.05-->11.45) (max @ vno 67434 --> 75142)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 375 mutations (36.3%), 659 crossovers (63.7%), 403 vertices were eliminated
- building final representation...
- 5333 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=116827, nf=233650, ne=350475, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 52.8 minutes
- 0 defective edges
- removing intersecting faces
- 000: 643 intersecting
- 001: 15 intersecting
- mris_fix_topology utimesec 3167.918403
- mris_fix_topology stimesec 0.187971
- mris_fix_topology ru_maxrss 396848
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 53203
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 23960
- mris_fix_topology ru_oublock 11544
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 631
- mris_fix_topology ru_nivcsw 4336
- FSRUNTIME@ mris_fix_topology lh 0.8798 hours 1 threads
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0051180 rh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-174 (nv=119062, nf=238472, ne=357708, g=88)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 14 iterations
- marking ambiguous vertices...
- 12380 ambiguous faces found in tessellation
- segmenting defects...
- 87 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- -merging segment 8 into 4
- -merging segment 19 into 17
- -merging segment 23 into 24
- -merging segment 40 into 36
- -merging segment 38 into 37
- 82 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.4810 (-4.7405)
- -vertex loglikelihood: -6.8117 (-3.4058)
- -normal dot loglikelihood: -3.5958 (-3.5958)
- -quad curv loglikelihood: -5.8559 (-2.9280)
- Total Loglikelihood : -25.7444
- CORRECTING DEFECT 0 (vertices=90, convex hull=93, v0=0)
- After retessellation of defect 0 (v0=0), euler #=-80 (111577,331870,220213) : difference with theory (-79) = 1
- CORRECTING DEFECT 1 (vertices=56, convex hull=80, v0=182)
- After retessellation of defect 1 (v0=182), euler #=-79 (111594,331951,220278) : difference with theory (-78) = 1
- CORRECTING DEFECT 2 (vertices=27, convex hull=26, v0=332)
- After retessellation of defect 2 (v0=332), euler #=-78 (111596,331964,220290) : difference with theory (-77) = 1
- CORRECTING DEFECT 3 (vertices=34, convex hull=60, v0=524)
- After retessellation of defect 3 (v0=524), euler #=-77 (111601,332006,220328) : difference with theory (-76) = 1
- CORRECTING DEFECT 4 (vertices=121, convex hull=202, v0=741)
- After retessellation of defect 4 (v0=741), euler #=-75 (111664,332295,220556) : difference with theory (-75) = 0
- CORRECTING DEFECT 5 (vertices=29, convex hull=70, v0=918)
- After retessellation of defect 5 (v0=918), euler #=-74 (111674,332351,220603) : difference with theory (-74) = 0
- CORRECTING DEFECT 6 (vertices=40, convex hull=60, v0=1013)
- After retessellation of defect 6 (v0=1013), euler #=-73 (111682,332401,220646) : difference with theory (-73) = 0
- CORRECTING DEFECT 7 (vertices=165, convex hull=98, v0=2217)
- After retessellation of defect 7 (v0=2217), euler #=-72 (111712,332535,220751) : difference with theory (-72) = 0
- CORRECTING DEFECT 8 (vertices=55, convex hull=75, v0=3155)
- After retessellation of defect 8 (v0=3155), euler #=-71 (111733,332628,220824) : difference with theory (-71) = 0
- CORRECTING DEFECT 9 (vertices=194, convex hull=120, v0=3784)
- After retessellation of defect 9 (v0=3784), euler #=-70 (111773,332807,220964) : difference with theory (-70) = 0
- CORRECTING DEFECT 10 (vertices=64, convex hull=95, v0=3835)
- After retessellation of defect 10 (v0=3835), euler #=-69 (111796,332918,221053) : difference with theory (-69) = 0
- CORRECTING DEFECT 11 (vertices=216, convex hull=114, v0=4370)
- After retessellation of defect 11 (v0=4370), euler #=-68 (111821,333041,221152) : difference with theory (-68) = 0
- CORRECTING DEFECT 12 (vertices=40, convex hull=51, v0=6591)
- After retessellation of defect 12 (v0=6591), euler #=-67 (111827,333078,221184) : difference with theory (-67) = 0
- CORRECTING DEFECT 13 (vertices=24, convex hull=60, v0=7187)
- After retessellation of defect 13 (v0=7187), euler #=-66 (111837,333133,221230) : difference with theory (-66) = 0
- CORRECTING DEFECT 14 (vertices=24, convex hull=82, v0=7746)
- After retessellation of defect 14 (v0=7746), euler #=-65 (111846,333189,221278) : difference with theory (-65) = 0
- CORRECTING DEFECT 15 (vertices=45, convex hull=80, v0=7855)
- After retessellation of defect 15 (v0=7855), euler #=-64 (111878,333321,221379) : difference with theory (-64) = 0
- CORRECTING DEFECT 16 (vertices=96, convex hull=136, v0=8170)
- After retessellation of defect 16 (v0=8170), euler #=-62 (111919,333508,221527) : difference with theory (-63) = -1
- CORRECTING DEFECT 17 (vertices=57, convex hull=85, v0=8433)
- After retessellation of defect 17 (v0=8433), euler #=-61 (111942,333609,221606) : difference with theory (-62) = -1
- CORRECTING DEFECT 18 (vertices=21, convex hull=56, v0=10241)
- After retessellation of defect 18 (v0=10241), euler #=-60 (111953,333661,221648) : difference with theory (-61) = -1
- CORRECTING DEFECT 19 (vertices=11, convex hull=32, v0=10693)
- After retessellation of defect 19 (v0=10693), euler #=-59 (111955,333678,221664) : difference with theory (-60) = -1
- CORRECTING DEFECT 20 (vertices=40, convex hull=85, v0=11401)
- After retessellation of defect 20 (v0=11401), euler #=-58 (111981,333790,221751) : difference with theory (-59) = -1
- CORRECTING DEFECT 21 (vertices=231, convex hull=173, v0=13768)
- After retessellation of defect 21 (v0=13768), euler #=-56 (112046,334067,221965) : difference with theory (-58) = -2
- CORRECTING DEFECT 22 (vertices=76, convex hull=56, v0=14527)
- After retessellation of defect 22 (v0=14527), euler #=-55 (112056,334119,222008) : difference with theory (-57) = -2
- CORRECTING DEFECT 23 (vertices=7, convex hull=24, v0=15336)
- After retessellation of defect 23 (v0=15336), euler #=-54 (112056,334125,222015) : difference with theory (-56) = -2
- CORRECTING DEFECT 24 (vertices=27, convex hull=31, v0=17147)
- After retessellation of defect 24 (v0=17147), euler #=-53 (112057,334138,222028) : difference with theory (-55) = -2
- CORRECTING DEFECT 25 (vertices=73, convex hull=91, v0=17374)
- After retessellation of defect 25 (v0=17374), euler #=-52 (112077,334235,222106) : difference with theory (-54) = -2
- CORRECTING DEFECT 26 (vertices=23, convex hull=29, v0=17870)
- After retessellation of defect 26 (v0=17870), euler #=-51 (112079,334250,222120) : difference with theory (-53) = -2
- CORRECTING DEFECT 27 (vertices=51, convex hull=34, v0=19944)
- After retessellation of defect 27 (v0=19944), euler #=-50 (112081,334270,222139) : difference with theory (-52) = -2
- CORRECTING DEFECT 28 (vertices=150, convex hull=94, v0=23260)
- After retessellation of defect 28 (v0=23260), euler #=-49 (112122,334433,222262) : difference with theory (-51) = -2
- CORRECTING DEFECT 29 (vertices=41, convex hull=67, v0=23639)
- After retessellation of defect 29 (v0=23639), euler #=-49 (112136,334504,222319) : difference with theory (-50) = -1
- CORRECTING DEFECT 30 (vertices=41, convex hull=81, v0=23897)
- After retessellation of defect 30 (v0=23897), euler #=-48 (112153,334585,222384) : difference with theory (-49) = -1
- CORRECTING DEFECT 31 (vertices=83, convex hull=107, v0=23964)
- After retessellation of defect 31 (v0=23964), euler #=-47 (112195,334750,222508) : difference with theory (-48) = -1
- CORRECTING DEFECT 32 (vertices=30, convex hull=34, v0=25030)
- After retessellation of defect 32 (v0=25030), euler #=-46 (112197,334770,222527) : difference with theory (-47) = -1
- CORRECTING DEFECT 33 (vertices=145, convex hull=145, v0=25142)
- After retessellation of defect 33 (v0=25142), euler #=-44 (112222,334918,222652) : difference with theory (-46) = -2
- CORRECTING DEFECT 34 (vertices=131, convex hull=142, v0=25991)
- After retessellation of defect 34 (v0=25991), euler #=-42 (112266,335118,222810) : difference with theory (-45) = -3
- CORRECTING DEFECT 35 (vertices=129, convex hull=80, v0=28375)
- After retessellation of defect 35 (v0=28375), euler #=-41 (112302,335264,222921) : difference with theory (-44) = -3
- CORRECTING DEFECT 36 (vertices=47, convex hull=30, v0=29074)
- After retessellation of defect 36 (v0=29074), euler #=-40 (112303,335277,222934) : difference with theory (-43) = -3
- CORRECTING DEFECT 37 (vertices=40, convex hull=64, v0=30707)
- After retessellation of defect 37 (v0=30707), euler #=-39 (112312,335331,222980) : difference with theory (-42) = -3
- CORRECTING DEFECT 38 (vertices=22, convex hull=28, v0=31226)
- After retessellation of defect 38 (v0=31226), euler #=-38 (112315,335349,222996) : difference with theory (-41) = -3
- CORRECTING DEFECT 39 (vertices=9, convex hull=23, v0=32397)
- After retessellation of defect 39 (v0=32397), euler #=-37 (112316,335358,223005) : difference with theory (-40) = -3
- CORRECTING DEFECT 40 (vertices=66, convex hull=89, v0=32893)
- After retessellation of defect 40 (v0=32893), euler #=-36 (112346,335483,223101) : difference with theory (-39) = -3
- CORRECTING DEFECT 41 (vertices=62, convex hull=99, v0=36044)
- After retessellation of defect 41 (v0=36044), euler #=-35 (112364,335580,223181) : difference with theory (-38) = -3
- CORRECTING DEFECT 42 (vertices=82, convex hull=83, v0=36291)
- After retessellation of defect 42 (v0=36291), euler #=-34 (112403,335726,223289) : difference with theory (-37) = -3
- CORRECTING DEFECT 43 (vertices=261, convex hull=171, v0=38733)
- After retessellation of defect 43 (v0=38733), euler #=-33 (112461,335978,223484) : difference with theory (-36) = -3
- CORRECTING DEFECT 44 (vertices=76, convex hull=130, v0=40682)
- After retessellation of defect 44 (v0=40682), euler #=-32 (112514,336198,223652) : difference with theory (-35) = -3
- CORRECTING DEFECT 45 (vertices=17, convex hull=39, v0=46776)
- After retessellation of defect 45 (v0=46776), euler #=-31 (112525,336246,223690) : difference with theory (-34) = -3
- CORRECTING DEFECT 46 (vertices=201, convex hull=146, v0=47179)
- After retessellation of defect 46 (v0=47179), euler #=-30 (112590,336513,223893) : difference with theory (-33) = -3
- CORRECTING DEFECT 47 (vertices=236, convex hull=168, v0=47264)
- After retessellation of defect 47 (v0=47264), euler #=-29 (112643,336749,224077) : difference with theory (-32) = -3
- CORRECTING DEFECT 48 (vertices=28, convex hull=75, v0=49458)
- After retessellation of defect 48 (v0=49458), euler #=-28 (112652,336806,224126) : difference with theory (-31) = -3
- CORRECTING DEFECT 49 (vertices=40, convex hull=21, v0=49717)
- After retessellation of defect 49 (v0=49717), euler #=-27 (112656,336823,224140) : difference with theory (-30) = -3
- CORRECTING DEFECT 50 (vertices=36, convex hull=56, v0=50065)
- After retessellation of defect 50 (v0=50065), euler #=-27 (112673,336898,224198) : difference with theory (-29) = -2
- CORRECTING DEFECT 51 (vertices=87, convex hull=130, v0=50386)
- After retessellation of defect 51 (v0=50386), euler #=-26 (112731,337126,224369) : difference with theory (-28) = -2
- CORRECTING DEFECT 52 (vertices=72, convex hull=77, v0=50428)
- After retessellation of defect 52 (v0=50428), euler #=-25 (112749,337213,224439) : difference with theory (-27) = -2
- CORRECTING DEFECT 53 (vertices=124, convex hull=90, v0=50963)
- After retessellation of defect 53 (v0=50963), euler #=-24 (112799,337402,224579) : difference with theory (-26) = -2
- CORRECTING DEFECT 54 (vertices=183, convex hull=43, v0=53575)
- After retessellation of defect 54 (v0=53575), euler #=-23 (112808,337442,224611) : difference with theory (-25) = -2
- CORRECTING DEFECT 55 (vertices=30, convex hull=36, v0=54561)
- After retessellation of defect 55 (v0=54561), euler #=-22 (112809,337460,224629) : difference with theory (-24) = -2
- CORRECTING DEFECT 56 (vertices=25, convex hull=57, v0=58598)
- After retessellation of defect 56 (v0=58598), euler #=-21 (112818,337510,224671) : difference with theory (-23) = -2
- CORRECTING DEFECT 57 (vertices=30, convex hull=54, v0=59282)
- After retessellation of defect 57 (v0=59282), euler #=-20 (112834,337573,224719) : difference with theory (-22) = -2
- CORRECTING DEFECT 58 (vertices=878, convex hull=408, v0=65723)
- L defect detected...
- normal vector of length zero at vertex 116206 with 4 faces
- normal vector of length zero at vertex 69849 with 4 faces
- After retessellation of defect 58 (v0=65723), euler #=-20 (113046,338425,225359) : difference with theory (-21) = -1
- CORRECTING DEFECT 59 (vertices=238, convex hull=131, v0=66603)
- After retessellation of defect 59 (v0=66603), euler #=-19 (113120,338716,225577) : difference with theory (-20) = -1
- CORRECTING DEFECT 60 (vertices=48, convex hull=55, v0=70529)
- After retessellation of defect 60 (v0=70529), euler #=-18 (113143,338807,225646) : difference with theory (-19) = -1
- CORRECTING DEFECT 61 (vertices=76, convex hull=106, v0=72274)
- After retessellation of defect 61 (v0=72274), euler #=-17 (113174,338944,225753) : difference with theory (-18) = -1
- CORRECTING DEFECT 62 (vertices=64, convex hull=76, v0=72391)
- After retessellation of defect 62 (v0=72391), euler #=-16 (113200,339054,225838) : difference with theory (-17) = -1
- CORRECTING DEFECT 63 (vertices=98, convex hull=100, v0=74033)
- After retessellation of defect 63 (v0=74033), euler #=-15 (113231,339186,225940) : difference with theory (-16) = -1
- CORRECTING DEFECT 64 (vertices=151, convex hull=92, v0=76612)
- After retessellation of defect 64 (v0=76612), euler #=-14 (113280,339375,226081) : difference with theory (-15) = -1
- CORRECTING DEFECT 65 (vertices=6, convex hull=20, v0=76670)
- After retessellation of defect 65 (v0=76670), euler #=-13 (113280,339380,226087) : difference with theory (-14) = -1
- CORRECTING DEFECT 66 (vertices=342, convex hull=166, v0=77838)
- After retessellation of defect 66 (v0=77838), euler #=-13 (113381,339775,226381) : difference with theory (-13) = 0
- CORRECTING DEFECT 67 (vertices=18, convex hull=29, v0=81379)
- After retessellation of defect 67 (v0=81379), euler #=-12 (113385,339795,226398) : difference with theory (-12) = 0
- CORRECTING DEFECT 68 (vertices=15, convex hull=24, v0=82160)
- After retessellation of defect 68 (v0=82160), euler #=-11 (113388,339810,226411) : difference with theory (-11) = 0
- CORRECTING DEFECT 69 (vertices=131, convex hull=82, v0=82199)
- After retessellation of defect 69 (v0=82199), euler #=-10 (113435,339986,226541) : difference with theory (-10) = 0
- CORRECTING DEFECT 70 (vertices=14, convex hull=16, v0=82920)
- After retessellation of defect 70 (v0=82920), euler #=-9 (113436,339995,226550) : difference with theory (-9) = 0
- CORRECTING DEFECT 71 (vertices=28, convex hull=32, v0=86255)
- After retessellation of defect 71 (v0=86255), euler #=-8 (113440,340018,226570) : difference with theory (-8) = 0
- CORRECTING DEFECT 72 (vertices=25, convex hull=49, v0=86257)
- After retessellation of defect 72 (v0=86257), euler #=-7 (113454,340080,226619) : difference with theory (-7) = 0
- CORRECTING DEFECT 73 (vertices=9, convex hull=29, v0=87907)
- After retessellation of defect 73 (v0=87907), euler #=-6 (113455,340092,226631) : difference with theory (-6) = 0
- CORRECTING DEFECT 74 (vertices=559, convex hull=156, v0=91975)
- After retessellation of defect 74 (v0=91975), euler #=-5 (113541,340420,226874) : difference with theory (-5) = 0
- CORRECTING DEFECT 75 (vertices=10, convex hull=22, v0=95609)
- After retessellation of defect 75 (v0=95609), euler #=-4 (113544,340438,226890) : difference with theory (-4) = 0
- CORRECTING DEFECT 76 (vertices=25, convex hull=43, v0=101904)
- After retessellation of defect 76 (v0=101904), euler #=-3 (113552,340481,226926) : difference with theory (-3) = 0
- CORRECTING DEFECT 77 (vertices=43, convex hull=55, v0=105058)
- After retessellation of defect 77 (v0=105058), euler #=-2 (113570,340563,226991) : difference with theory (-2) = 0
- CORRECTING DEFECT 78 (vertices=129, convex hull=126, v0=109224)
- After retessellation of defect 78 (v0=109224), euler #=-1 (113606,340729,227122) : difference with theory (-1) = 0
- CORRECTING DEFECT 79 (vertices=60, convex hull=84, v0=112766)
- After retessellation of defect 79 (v0=112766), euler #=0 (113625,340820,227195) : difference with theory (0) = 0
- CORRECTING DEFECT 80 (vertices=43, convex hull=73, v0=115815)
- After retessellation of defect 80 (v0=115815), euler #=1 (113641,340901,227261) : difference with theory (1) = 0
- CORRECTING DEFECT 81 (vertices=20, convex hull=45, v0=116564)
- After retessellation of defect 81 (v0=116564), euler #=2 (113646,340932,227288) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.90 +- 0.28 (0.06-->10.65) (max @ vno 4487 --> 7881)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.90 +- 0.28 (0.06-->10.65) (max @ vno 4487 --> 7881)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 277 mutations (35.4%), 505 crossovers (64.6%), 348 vertices were eliminated
- building final representation...
- 5416 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=113646, nf=227288, ne=340932, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 43.6 minutes
- 0 defective edges
- removing intersecting faces
- 000: 534 intersecting
- 001: 41 intersecting
- 002: 9 intersecting
- expanding nbhd size to 2
- 003: 14 intersecting
- 004: 13 intersecting
- expanding nbhd size to 3
- 005: 16 intersecting
- 006: 14 intersecting
- expanding nbhd size to 4
- 007: 14 intersecting
- 008: 12 intersecting
- 009: 10 intersecting
- expanding nbhd size to 5
- 010: 10 intersecting
- 011: 9 intersecting
- 012: 5 intersecting
- 013: 4 intersecting
- mris_fix_topology utimesec 2619.052843
- mris_fix_topology stimesec 0.150977
- mris_fix_topology ru_maxrss 395988
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 54280
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 15360
- mris_fix_topology ru_oublock 11224
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 403
- mris_fix_topology ru_nivcsw 6319
- FSRUNTIME@ mris_fix_topology rh 0.7275 hours 1 threads
- PIDs (7184 7187) completed and logs appended.
- mris_euler_number ../surf/lh.orig
- euler # = v-e+f = 2g-2: 116827 - 350475 + 233650 = 2 --> 0 holes
- F =2V-4: 233650 = 233654-4 (0)
- 2E=3F: 700950 = 700950 (0)
- total defect index = 0
- mris_euler_number ../surf/rh.orig
- euler # = v-e+f = 2g-2: 113646 - 340932 + 227288 = 2 --> 0 holes
- F =2V-4: 227288 = 227292-4 (0)
- 2E=3F: 681864 = 681864 (0)
- total defect index = 0
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_remove_intersection ../surf/lh.orig ../surf/lh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 66 intersecting
- 001: 4 intersecting
- 002: 3 intersecting
- expanding nbhd size to 2
- 003: 6 intersecting
- writing corrected surface to ../surf/lh.orig
- rm ../surf/lh.inflated
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_remove_intersection ../surf/rh.orig ../surf/rh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 63 intersecting
- 001: 17 intersecting
- 002: 12 intersecting
- expanding nbhd size to 2
- 003: 13 intersecting
- expanding nbhd size to 3
- 004: 13 intersecting
- expanding nbhd size to 4
- 005: 13 intersecting
- expanding nbhd size to 5
- 006: 15 intersecting
- 007: 12 intersecting
- expanding nbhd size to 6
- 008: 13 intersecting
- 009: 11 intersecting
- expanding nbhd size to 7
- 010: 11 intersecting
- 011: 3 intersecting
- writing corrected surface to ../surf/rh.orig
- rm ../surf/rh.inflated
- #--------------------------------------------
- #@# Make White Surf lh Sun Oct 8 00:26:28 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051180 lh
- #--------------------------------------------
- #@# Make White Surf rh Sun Oct 8 00:26:28 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051180 rh
- Waiting for PID 11613 of (11613 11616) to complete...
- Waiting for PID 11616 of (11613 11616) to complete...
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051180 lh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- 15848 bright wm thresholded.
- 1559 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.orig...
- computing class statistics...
- border white: 209327 voxels (1.25%)
- border gray 263634 voxels (1.57%)
- WM (95.0): 95.5 +- 9.7 [70.0 --> 110.0]
- GM (64.0) : 64.0 +- 11.8 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 49.2 (was 70)
- setting MAX_BORDER_WHITE to 111.7 (was 105)
- setting MIN_BORDER_WHITE to 61.0 (was 85)
- setting MAX_CSF to 37.5 (was 40)
- setting MAX_GRAY to 92.3 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 49.2 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 25.7 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.83 +- 0.24 (0.01-->5.47) (max @ vno 67434 --> 116138)
- face area 0.29 +- 0.14 (0.00-->4.59)
- mean absolute distance = 0.62 +- 0.76
- 2960 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-9.6, GM=61+-7.8
- mean inside = 90.3, mean outside = 69.1
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=74.0, 133 (133) missing vertices, mean dist 0.3 [0.5 (%32.1)->0.7 (%67.9))]
- %65 local maxima, %28 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.93 +- 0.27 (0.04-->6.70) (max @ vno 48761 --> 42768)
- face area 0.29 +- 0.14 (0.00-->4.53)
- mean absolute distance = 0.31 +- 0.53
- 2078 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3249251.0, rms=11.197
- 001: dt: 0.5000, sse=1901837.6, rms=8.102 (27.636%)
- 002: dt: 0.5000, sse=1349891.9, rms=6.370 (21.379%)
- 003: dt: 0.5000, sse=1086528.2, rms=5.346 (16.079%)
- 004: dt: 0.5000, sse=961273.3, rms=4.777 (10.645%)
- 005: dt: 0.5000, sse=914702.5, rms=4.494 (5.917%)
- 006: dt: 0.5000, sse=878440.1, rms=4.351 (3.199%)
- 007: dt: 0.5000, sse=866779.5, rms=4.270 (1.855%)
- 008: dt: 0.5000, sse=871117.8, rms=4.217 (1.226%)
- rms = 4.18, time step reduction 1 of 3 to 0.250...
- 009: dt: 0.5000, sse=850516.7, rms=4.181 (0.864%)
- 010: dt: 0.2500, sse=657692.8, rms=2.876 (31.210%)
- 011: dt: 0.2500, sse=618501.4, rms=2.534 (11.901%)
- 012: dt: 0.2500, sse=609345.1, rms=2.449 (3.365%)
- 013: dt: 0.2500, sse=604853.2, rms=2.393 (2.264%)
- rms = 2.37, time step reduction 2 of 3 to 0.125...
- 014: dt: 0.2500, sse=606019.2, rms=2.370 (0.982%)
- 015: dt: 0.1250, sse=590356.8, rms=2.250 (5.046%)
- rms = 2.23, time step reduction 3 of 3 to 0.062...
- 016: dt: 0.1250, sse=589221.3, rms=2.233 (0.764%)
- positioning took 1.4 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 1 vertex label from ripped group
- mean border=77.5, 120 (26) missing vertices, mean dist -0.2 [0.3 (%74.2)->0.3 (%25.8))]
- %75 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.92 +- 0.27 (0.08-->7.31) (max @ vno 48761 --> 42768)
- face area 0.36 +- 0.18 (0.00-->5.93)
- mean absolute distance = 0.23 +- 0.39
- 2368 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1158876.0, rms=5.080
- 017: dt: 0.5000, sse=889449.4, rms=3.637 (28.408%)
- rms = 3.91, time step reduction 1 of 3 to 0.250...
- 018: dt: 0.2500, sse=755955.5, rms=2.714 (25.370%)
- 019: dt: 0.2500, sse=710132.3, rms=2.251 (17.074%)
- 020: dt: 0.2500, sse=691175.4, rms=2.081 (7.556%)
- rms = 2.04, time step reduction 2 of 3 to 0.125...
- 021: dt: 0.2500, sse=687751.9, rms=2.039 (2.000%)
- 022: dt: 0.1250, sse=678686.9, rms=1.947 (4.516%)
- rms = 1.93, time step reduction 3 of 3 to 0.062...
- 023: dt: 0.1250, sse=678132.9, rms=1.932 (0.771%)
- positioning took 0.6 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 1 vertex label from ripped group
- removing 1 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=79.3, 140 (12) missing vertices, mean dist -0.1 [0.2 (%63.1)->0.2 (%36.9))]
- %80 local maxima, %13 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.92 +- 0.27 (0.11-->8.00) (max @ vno 48761 --> 42768)
- face area 0.35 +- 0.18 (0.00-->5.63)
- mean absolute distance = 0.22 +- 0.35
- 2461 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=791914.6, rms=3.009
- rms = 3.25, time step reduction 1 of 3 to 0.250...
- 024: dt: 0.2500, sse=706760.8, rms=2.276 (24.347%)
- 025: dt: 0.2500, sse=671015.4, rms=1.859 (18.346%)
- rms = 1.83, time step reduction 2 of 3 to 0.125...
- 026: dt: 0.2500, sse=666351.7, rms=1.827 (1.721%)
- 027: dt: 0.1250, sse=659907.9, rms=1.747 (4.392%)
- rms = 1.74, time step reduction 3 of 3 to 0.062...
- 028: dt: 0.1250, sse=658942.0, rms=1.737 (0.536%)
- positioning took 0.5 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 1 vertex label from ripped group
- removing 1 vertex label from ripped group
- mean border=79.9, 158 (9) missing vertices, mean dist -0.0 [0.2 (%53.1)->0.2 (%46.9))]
- %82 local maxima, %11 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white.preaparc...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=675259.0, rms=1.965
- rms = 2.29, time step reduction 1 of 3 to 0.250...
- 029: dt: 0.2500, sse=645105.8, rms=1.573 (19.958%)
- 030: dt: 0.2500, sse=634271.4, rms=1.418 (9.864%)
- rms = 1.42, time step reduction 2 of 3 to 0.125...
- rms = 1.41, time step reduction 3 of 3 to 0.062...
- 031: dt: 0.1250, sse=632660.5, rms=1.406 (0.860%)
- positioning took 0.4 minutes
- generating cortex label...
- 14 non-cortical segments detected
- only using segment with 7410 vertices
- erasing segment 1 (vno[0] = 40161)
- erasing segment 2 (vno[0] = 45934)
- erasing segment 3 (vno[0] = 54033)
- erasing segment 4 (vno[0] = 62881)
- erasing segment 5 (vno[0] = 68368)
- erasing segment 6 (vno[0] = 71142)
- erasing segment 7 (vno[0] = 71172)
- erasing segment 8 (vno[0] = 72649)
- erasing segment 9 (vno[0] = 76556)
- erasing segment 10 (vno[0] = 76586)
- erasing segment 11 (vno[0] = 80120)
- erasing segment 12 (vno[0] = 80976)
- erasing segment 13 (vno[0] = 84311)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.area
- vertex spacing 0.92 +- 0.28 (0.03-->8.25) (max @ vno 42768 --> 48761)
- face area 0.35 +- 0.18 (0.00-->5.46)
- refinement took 4.4 minutes
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0051180 rh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- 15848 bright wm thresholded.
- 1559 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.orig...
- computing class statistics...
- border white: 209327 voxels (1.25%)
- border gray 263634 voxels (1.57%)
- WM (95.0): 95.5 +- 9.7 [70.0 --> 110.0]
- GM (64.0) : 64.0 +- 11.8 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 46.2 (was 70)
- setting MAX_BORDER_WHITE to 109.7 (was 105)
- setting MIN_BORDER_WHITE to 58.0 (was 85)
- setting MAX_CSF to 34.5 (was 40)
- setting MAX_GRAY to 90.3 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 46.2 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 22.7 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.83 +- 0.24 (0.03-->4.82) (max @ vno 11577 --> 111992)
- face area 0.29 +- 0.13 (0.00-->4.16)
- mean absolute distance = 0.66 +- 0.81
- 2799 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=100+-9.6, GM=58+-9.6
- mean inside = 89.4, mean outside = 67.6
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- mean border=72.2, 108 (108) missing vertices, mean dist 0.4 [0.5 (%31.5)->0.7 (%68.5))]
- %65 local maxima, %29 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.93 +- 0.28 (0.10-->4.84) (max @ vno 71540 --> 112983)
- face area 0.29 +- 0.14 (0.00-->3.20)
- mean absolute distance = 0.32 +- 0.55
- 2252 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3724395.8, rms=12.225
- 001: dt: 0.5000, sse=2155713.5, rms=8.885 (27.317%)
- 002: dt: 0.5000, sse=1501409.8, rms=6.974 (21.514%)
- 003: dt: 0.5000, sse=1187296.9, rms=5.852 (16.085%)
- 004: dt: 0.5000, sse=1042687.7, rms=5.241 (10.444%)
- 005: dt: 0.5000, sse=966329.2, rms=4.889 (6.709%)
- 006: dt: 0.5000, sse=937971.2, rms=4.707 (3.729%)
- 007: dt: 0.5000, sse=906943.0, rms=4.582 (2.657%)
- 008: dt: 0.5000, sse=897784.9, rms=4.518 (1.393%)
- 009: dt: 0.5000, sse=890526.1, rms=4.453 (1.430%)
- rms = 4.43, time step reduction 1 of 3 to 0.250...
- 010: dt: 0.5000, sse=883759.9, rms=4.431 (0.509%)
- 011: dt: 0.2500, sse=670202.1, rms=3.069 (30.741%)
- 012: dt: 0.2500, sse=630152.4, rms=2.727 (11.121%)
- 013: dt: 0.2500, sse=618986.2, rms=2.635 (3.400%)
- 014: dt: 0.2500, sse=611606.7, rms=2.569 (2.476%)
- rms = 2.54, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=611658.8, rms=2.535 (1.331%)
- 016: dt: 0.1250, sse=591484.8, rms=2.349 (7.358%)
- rms = 2.32, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=587062.8, rms=2.323 (1.093%)
- positioning took 1.4 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 2 vertex label from ripped group
- mean border=75.7, 191 (23) missing vertices, mean dist -0.2 [0.3 (%73.4)->0.3 (%26.6))]
- %74 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.93 +- 0.27 (0.10-->4.73) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.18 (0.00-->4.13)
- mean absolute distance = 0.24 +- 0.41
- 2335 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1184606.4, rms=5.261
- 018: dt: 0.5000, sse=904194.6, rms=3.812 (27.540%)
- rms = 4.19, time step reduction 1 of 3 to 0.250...
- 019: dt: 0.2500, sse=760345.1, rms=2.810 (26.284%)
- 020: dt: 0.2500, sse=716238.9, rms=2.321 (17.411%)
- 021: dt: 0.2500, sse=690935.2, rms=2.106 (9.245%)
- rms = 2.06, time step reduction 2 of 3 to 0.125...
- 022: dt: 0.2500, sse=683431.0, rms=2.060 (2.185%)
- 023: dt: 0.1250, sse=674527.1, rms=1.918 (6.888%)
- rms = 1.90, time step reduction 3 of 3 to 0.062...
- 024: dt: 0.1250, sse=669484.0, rms=1.897 (1.129%)
- positioning took 0.6 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=77.5, 222 (17) missing vertices, mean dist -0.1 [0.2 (%62.9)->0.2 (%37.1))]
- %79 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.93 +- 0.27 (0.09-->4.71) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.18 (0.00-->4.08)
- mean absolute distance = 0.22 +- 0.37
- 2384 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=788595.3, rms=3.047
- rms = 3.35, time step reduction 1 of 3 to 0.250...
- 025: dt: 0.2500, sse=698956.8, rms=2.264 (25.701%)
- 026: dt: 0.2500, sse=659296.1, rms=1.793 (20.788%)
- 027: dt: 0.2500, sse=660843.4, rms=1.740 (2.973%)
- rms = 1.72, time step reduction 2 of 3 to 0.125...
- 028: dt: 0.2500, sse=672468.3, rms=1.715 (1.418%)
- 029: dt: 0.1250, sse=645155.9, rms=1.637 (4.568%)
- rms = 1.63, time step reduction 3 of 3 to 0.062...
- 030: dt: 0.1250, sse=644936.6, rms=1.632 (0.331%)
- positioning took 0.6 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=78.2, 241 (14) missing vertices, mean dist -0.0 [0.2 (%53.1)->0.2 (%46.9))]
- %81 local maxima, %12 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white.preaparc...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=660262.6, rms=1.856
- rms = 2.24, time step reduction 1 of 3 to 0.250...
- 031: dt: 0.2500, sse=629842.1, rms=1.423 (23.310%)
- 032: dt: 0.2500, sse=621963.8, rms=1.252 (12.020%)
- rms = 1.24, time step reduction 2 of 3 to 0.125...
- 033: dt: 0.2500, sse=619076.5, rms=1.236 (1.282%)
- rms = 1.21, time step reduction 3 of 3 to 0.062...
- 034: dt: 0.1250, sse=617518.0, rms=1.213 (1.822%)
- positioning took 0.4 minutes
- generating cortex label...
- 15 non-cortical segments detected
- only using segment with 7367 vertices
- erasing segment 1 (vno[0] = 46577)
- erasing segment 2 (vno[0] = 67374)
- erasing segment 3 (vno[0] = 74013)
- erasing segment 4 (vno[0] = 74668)
- erasing segment 5 (vno[0] = 76213)
- erasing segment 6 (vno[0] = 77640)
- erasing segment 7 (vno[0] = 78959)
- erasing segment 8 (vno[0] = 79559)
- erasing segment 9 (vno[0] = 80210)
- erasing segment 10 (vno[0] = 81320)
- erasing segment 11 (vno[0] = 81335)
- erasing segment 12 (vno[0] = 81359)
- erasing segment 13 (vno[0] = 82525)
- erasing segment 14 (vno[0] = 85334)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.area
- vertex spacing 0.92 +- 0.27 (0.05-->4.69) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.18 (0.00-->3.99)
- refinement took 4.4 minutes
- PIDs (11613 11616) completed and logs appended.
- #--------------------------------------------
- #@# Smooth2 lh Sun Oct 8 00:30:53 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- #--------------------------------------------
- #@# Smooth2 rh Sun Oct 8 00:30:53 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- Waiting for PID 11837 of (11837 11840) to complete...
- Waiting for PID 11840 of (11837 11840) to complete...
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (11837 11840) completed and logs appended.
- #--------------------------------------------
- #@# Inflation2 lh Sun Oct 8 00:30:58 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- #--------------------------------------------
- #@# Inflation2 rh Sun Oct 8 00:30:58 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Waiting for PID 11883 of (11883 11886) to complete...
- Waiting for PID 11886 of (11883 11886) to complete...
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- Reading ../surf/lh.smoothwm
- avg radius = 46.6 mm, total surface area = 74801 mm^2
- writing inflated surface to ../surf/lh.inflated
- writing sulcal depths to ../surf/lh.sulc
-
step 000: RMS=0.182 (target=0.015)
step 005: RMS=0.129 (target=0.015)
step 010: RMS=0.101 (target=0.015)
step 015: RMS=0.084 (target=0.015)
step 020: RMS=0.071 (target=0.015)
step 025: RMS=0.062 (target=0.015)
step 030: RMS=0.054 (target=0.015)
step 035: RMS=0.046 (target=0.015)
step 040: RMS=0.040 (target=0.015)
step 045: RMS=0.035 (target=0.015)
step 050: RMS=0.032 (target=0.015)
step 055: RMS=0.030 (target=0.015)
step 060: RMS=0.029 (target=0.015)
- inflation complete.
- inflation took 0.6 minutes
- mris_inflate utimesec 37.167349
- mris_inflate stimesec 0.097985
- mris_inflate ru_maxrss 171972
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 25683
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 8224
- mris_inflate ru_oublock 9160
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 1937
- mris_inflate ru_nivcsw 2827
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Reading ../surf/rh.smoothwm
- avg radius = 46.9 mm, total surface area = 73221 mm^2
- writing inflated surface to ../surf/rh.inflated
- writing sulcal depths to ../surf/rh.sulc
-
step 000: RMS=0.183 (target=0.015)
step 005: RMS=0.132 (target=0.015)
step 010: RMS=0.104 (target=0.015)
step 015: RMS=0.088 (target=0.015)
step 020: RMS=0.075 (target=0.015)
step 025: RMS=0.063 (target=0.015)
step 030: RMS=0.055 (target=0.015)
step 035: RMS=0.048 (target=0.015)
step 040: RMS=0.043 (target=0.015)
step 045: RMS=0.038 (target=0.015)
step 050: RMS=0.035 (target=0.015)
step 055: RMS=0.031 (target=0.015)
step 060: RMS=0.030 (target=0.015)
- inflation complete.
- inflation took 0.6 minutes
- mris_inflate utimesec 36.356472
- mris_inflate stimesec 0.099984
- mris_inflate ru_maxrss 167492
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 25069
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 0
- mris_inflate ru_oublock 8904
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 1756
- mris_inflate ru_nivcsw 2782
- PIDs (11883 11886) completed and logs appended.
- #--------------------------------------------
- #@# Curv .H and .K lh Sun Oct 8 00:31:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- mris_curvature -w lh.white.preaparc
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- #--------------------------------------------
- #@# Curv .H and .K rh Sun Oct 8 00:31:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- mris_curvature -w rh.white.preaparc
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- reconbatchjobs /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts/recon-all.log mris_curvature_white_lh.cmd rm_curvature_white_lh.H.cmd ln_curvature_white_lh.H.cmd rm_curvature_white_lh.K.cmd ln_curvature_white_lh.K.cmd mris_curvature_inflated_lh.cmd mris_curvature_white_rh.cmd rm_curvature_white_rh.H.cmd ln_curvature_white_rh.H.cmd rm_curvature_white_rh.K.cmd ln_curvature_white_rh.K.cmd mris_curvature_inflated_rh.cmd
- Waiting for PID 11982 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 11985 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 11988 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 11991 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 11994 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 11997 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 12000 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 12003 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 12006 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 12009 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 12014 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- Waiting for PID 12017 of (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) to complete...
- mris_curvature -w lh.white.preaparc
- total integrated curvature = 17.307*4pi (217.482) --> -16 handles
- ICI = 160.1, FI = 1652.6, variation=25832.895
- writing Gaussian curvature to ./lh.white.preaparc.K...done.
- writing mean curvature to ./lh.white.preaparc.H...done.
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 133 vertices thresholded to be in k1 ~ [-0.44 0.83], k2 ~ [-0.70 0.08]
- total integrated curvature = 0.343*4pi (4.309) --> 1 handles
- ICI = 1.1, FI = 8.3, variation=138.290
- 120 vertices thresholded to be in [-0.09 0.03]
- writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.002
- 88 vertices thresholded to be in [-0.23 0.22]
- done.
- writing mean curvature to ./lh.inflated.H...curvature mean = -0.018, std = 0.022
- done.
- mris_curvature -w rh.white.preaparc
- total integrated curvature = 30.913*4pi (388.468) --> -30 handles
- ICI = 167.4, FI = 1756.6, variation=27104.372
- writing Gaussian curvature to ./rh.white.preaparc.K...done.
- writing mean curvature to ./rh.white.preaparc.H...done.
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 116 vertices thresholded to be in k1 ~ [-0.28 0.63], k2 ~ [-0.14 0.12]
- total integrated curvature = 0.375*4pi (4.712) --> 1 handles
- ICI = 1.2, FI = 8.0, variation=136.330
- 102 vertices thresholded to be in [-0.03 0.02]
- writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 95 vertices thresholded to be in [-0.15 0.16]
- done.
- writing mean curvature to ./rh.inflated.H...curvature mean = -0.018, std = 0.021
- done.
- PIDs (11982 11985 11988 11991 11994 11997 12000 12003 12006 12009 12014 12017) completed and logs appended.
- #-----------------------------------------
- #@# Curvature Stats lh Sun Oct 8 00:32:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm 0051180 lh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/lh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0051180/lh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 253 ]
- Gb_filter = 0
- WARN: S lookup min: -1.250901
- WARN: S explicit min: 0.000000 vertex = 269
- #-----------------------------------------
- #@# Curvature Stats rh Sun Oct 8 00:32:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm 0051180 rh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/rh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0051180/rh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 210 ]
- Gb_filter = 0
- #--------------------------------------------
- #@# Sphere lh Sun Oct 8 00:32:52 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- #--------------------------------------------
- #@# Sphere rh Sun Oct 8 00:32:52 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- Waiting for PID 12149 of (12149 12153) to complete...
- Waiting for PID 12153 of (12149 12153) to complete...
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.286...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %20.76
- pass 1: epoch 2 of 3 starting distance error %20.68
- unfolding complete - removing small folds...
- starting distance error %20.55
- removing remaining folds...
- final distance error %20.58
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 140 negative triangles
- 273: dt=0.9900, 140 negative triangles
- 274: dt=0.9900, 59 negative triangles
- 275: dt=0.9900, 50 negative triangles
- 276: dt=0.9900, 31 negative triangles
- 277: dt=0.9900, 27 negative triangles
- 278: dt=0.9900, 28 negative triangles
- 279: dt=0.9900, 25 negative triangles
- 280: dt=0.9900, 23 negative triangles
- 281: dt=0.9900, 18 negative triangles
- 282: dt=0.9900, 16 negative triangles
- 283: dt=0.9900, 13 negative triangles
- 284: dt=0.9900, 11 negative triangles
- 285: dt=0.9900, 10 negative triangles
- 286: dt=0.9900, 8 negative triangles
- 287: dt=0.9900, 6 negative triangles
- 288: dt=0.9900, 4 negative triangles
- 289: dt=0.9900, 3 negative triangles
- 290: dt=0.9900, 3 negative triangles
- 291: dt=0.9900, 3 negative triangles
- writing spherical brain to ../surf/lh.sphere
- spherical transformation took 0.88 hours
- mris_sphere utimesec 3318.195557
- mris_sphere stimesec 1.493772
- mris_sphere ru_maxrss 243000
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 42564
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 8248
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 120834
- mris_sphere ru_nivcsw 252256
- FSRUNTIME@ mris_sphere 0.8778 hours 1 threads
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.286...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %21.57
- pass 1: epoch 2 of 3 starting distance error %21.51
- unfolding complete - removing small folds...
- starting distance error %21.34
- removing remaining folds...
- final distance error %21.38
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 174 negative triangles
- 225: dt=0.9900, 174 negative triangles
- 226: dt=0.9900, 69 negative triangles
- 227: dt=0.9900, 46 negative triangles
- 228: dt=0.9900, 52 negative triangles
- 229: dt=0.9900, 46 negative triangles
- 230: dt=0.9900, 36 negative triangles
- 231: dt=0.9900, 30 negative triangles
- 232: dt=0.9900, 22 negative triangles
- 233: dt=0.9900, 19 negative triangles
- 234: dt=0.9900, 11 negative triangles
- 235: dt=0.9900, 15 negative triangles
- 236: dt=0.9900, 10 negative triangles
- 237: dt=0.9900, 8 negative triangles
- 238: dt=0.9900, 9 negative triangles
- 239: dt=0.9900, 8 negative triangles
- 240: dt=0.9900, 6 negative triangles
- 241: dt=0.9900, 5 negative triangles
- 242: dt=0.9900, 4 negative triangles
- 243: dt=0.9900, 3 negative triangles
- 244: dt=0.9900, 4 negative triangles
- 245: dt=0.9900, 4 negative triangles
- 246: dt=0.9900, 2 negative triangles
- 247: dt=0.9900, 2 negative triangles
- 248: dt=0.9900, 1 negative triangles
- writing spherical brain to ../surf/rh.sphere
- spherical transformation took 0.82 hours
- mris_sphere utimesec 2935.613718
- mris_sphere stimesec 1.608755
- mris_sphere ru_maxrss 234664
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 41492
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 8032
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 118715
- mris_sphere ru_nivcsw 252675
- FSRUNTIME@ mris_sphere 0.8157 hours 1 threads
- PIDs (12149 12153) completed and logs appended.
- #--------------------------------------------
- #@# Surf Reg lh Sun Oct 8 01:25:32 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- #--------------------------------------------
- #@# Surf Reg rh Sun Oct 8 01:25:32 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- Waiting for PID 14476 of (14476 14479) to complete...
- Waiting for PID 14479 of (14476 14479) to complete...
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/lh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 0
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading lh.sulc
- curvature mean = 0.000, std = 5.704
- curvature mean = 0.040, std = 0.813
- curvature mean = 0.011, std = 0.885
- Starting MRISrigidBodyAlignGlobal()
- d=64.00 min @ (0.00, -16.00, 16.00) sse = 267670.1, tmin=0.8991
- d=32.00 min @ (0.00, 8.00, -8.00) sse = 232510.9, tmin=1.8205
- d=16.00 min @ (0.00, -4.00, 4.00) sse = 220201.5, tmin=2.7481
- d=8.00 min @ (-2.00, 2.00, 0.00) sse = 216192.1, tmin=3.6891
- d=4.00 min @ (1.00, 0.00, 0.00) sse = 215381.2, tmin=4.6372
- d=2.00 min @ (0.00, -0.50, 0.00) sse = 215117.8, tmin=5.5864
- d=1.00 min @ (-0.25, 0.00, 0.25) sse = 215042.7, tmin=6.5327
- d=0.50 min @ (0.00, 0.12, 0.00) sse = 215026.4, tmin=7.4851
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 7.49 min
- curvature mean = 0.027, std = 0.846
- curvature mean = 0.004, std = 0.958
- curvature mean = 0.026, std = 0.858
- curvature mean = 0.002, std = 0.983
- curvature mean = 0.026, std = 0.862
- curvature mean = 0.000, std = 0.993
- 2 Reading smoothwm
- curvature mean = -0.035, std = 0.324
- curvature mean = 0.043, std = 0.249
- curvature mean = 0.067, std = 0.323
- curvature mean = 0.037, std = 0.309
- curvature mean = 0.047, std = 0.479
- curvature mean = 0.036, std = 0.335
- curvature mean = 0.027, std = 0.609
- curvature mean = 0.035, std = 0.346
- curvature mean = 0.009, std = 0.722
- MRISregister() return, current seed 0
- -01: dt=0.0000, 60 negative triangles
- 116: dt=0.9900, 60 negative triangles
- expanding nbhd size to 1
- 117: dt=0.9900, 93 negative triangles
- 118: dt=0.9900, 55 negative triangles
- 119: dt=0.9900, 59 negative triangles
- 120: dt=0.9900, 60 negative triangles
- 121: dt=0.9900, 62 negative triangles
- 122: dt=0.9900, 51 negative triangles
- 123: dt=0.9900, 42 negative triangles
- 124: dt=0.9900, 53 negative triangles
- 125: dt=0.9900, 40 negative triangles
- 126: dt=0.9900, 35 negative triangles
- 127: dt=0.9900, 38 negative triangles
- 128: dt=0.9900, 35 negative triangles
- 129: dt=0.9900, 28 negative triangles
- 130: dt=0.9900, 28 negative triangles
- 131: dt=0.9900, 25 negative triangles
- 132: dt=0.9900, 19 negative triangles
- 133: dt=0.9900, 19 negative triangles
- 134: dt=0.9900, 14 negative triangles
- 135: dt=0.9900, 12 negative triangles
- 136: dt=0.9900, 10 negative triangles
- 137: dt=0.9900, 6 negative triangles
- 138: dt=0.9900, 7 negative triangles
- 139: dt=0.9900, 7 negative triangles
- 140: dt=0.9900, 6 negative triangles
- 141: dt=0.9900, 3 negative triangles
- 142: dt=0.9900, 3 negative triangles
- 143: dt=0.9900, 2 negative triangles
- 144: dt=0.9900, 3 negative triangles
- 145: dt=0.9900, 3 negative triangles
- 146: dt=0.9900, 3 negative triangles
- 147: dt=0.9900, 1 negative triangles
- 148: dt=0.9900, 2 negative triangles
- 149: dt=0.9900, 2 negative triangles
- 150: dt=0.9900, 2 negative triangles
- writing registered surface to ../surf/lh.sphere.reg...
- registration took 1.26 hours
- mris_register utimesec 4531.874050
- mris_register stimesec 5.361184
- mris_register ru_maxrss 226644
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 33369
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 8224
- mris_register ru_oublock 8320
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 386204
- mris_register ru_nivcsw 236005
- FSRUNTIME@ mris_register 1.2601 hours 1 threads
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/rh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 1
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading rh.sulc
- curvature mean = -0.000, std = 5.559
- curvature mean = 0.049, std = 0.813
- curvature mean = 0.009, std = 0.880
- Starting MRISrigidBodyAlignGlobal()
- d=64.00 min @ (0.00, 0.00, 16.00) sse = 284835.0, tmin=0.8739
- d=32.00 min @ (-8.00, 0.00, 0.00) sse = 250053.7, tmin=1.7635
- d=16.00 min @ (0.00, -4.00, 4.00) sse = 240315.4, tmin=2.6583
- d=8.00 min @ (2.00, 0.00, 0.00) sse = 239345.3, tmin=3.5762
- d=4.00 min @ (-1.00, 1.00, -1.00) sse = 238118.7, tmin=4.4985
- d=1.00 min @ (0.00, 0.00, 0.25) sse = 238066.1, tmin=6.3384
- d=0.50 min @ (0.00, -0.12, 0.00) sse = 238051.4, tmin=7.2524
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 7.25 min
- curvature mean = 0.034, std = 0.839
- curvature mean = 0.004, std = 0.958
- curvature mean = 0.033, std = 0.851
- curvature mean = 0.001, std = 0.983
- curvature mean = 0.032, std = 0.854
- curvature mean = 0.000, std = 0.993
- 2 Reading smoothwm
- curvature mean = -0.036, std = 0.336
- curvature mean = 0.042, std = 0.244
- curvature mean = 0.067, std = 0.323
- curvature mean = 0.035, std = 0.306
- curvature mean = 0.051, std = 0.467
- curvature mean = 0.034, std = 0.333
- curvature mean = 0.030, std = 0.593
- curvature mean = 0.033, std = 0.344
- curvature mean = 0.011, std = 0.707
- MRISregister() return, current seed 0
- -01: dt=0.0000, 95 negative triangles
- 117: dt=0.9900, 95 negative triangles
- expanding nbhd size to 1
- 118: dt=0.9900, 144 negative triangles
- 119: dt=0.9900, 100 negative triangles
- 120: dt=0.9900, 93 negative triangles
- 121: dt=0.9900, 98 negative triangles
- 122: dt=0.9900, 93 negative triangles
- 123: dt=0.9900, 93 negative triangles
- 124: dt=0.9900, 83 negative triangles
- 125: dt=0.9900, 80 negative triangles
- 126: dt=0.9900, 68 negative triangles
- 127: dt=0.9900, 60 negative triangles
- 128: dt=0.9900, 60 negative triangles
- 129: dt=0.9900, 55 negative triangles
- 130: dt=0.9900, 60 negative triangles
- 131: dt=0.9900, 53 negative triangles
- 132: dt=0.9900, 47 negative triangles
- 133: dt=0.9900, 46 negative triangles
- 134: dt=0.9900, 43 negative triangles
- 135: dt=0.9900, 38 negative triangles
- 136: dt=0.9900, 36 negative triangles
- 137: dt=0.9900, 37 negative triangles
- 138: dt=0.9900, 32 negative triangles
- 139: dt=0.9900, 31 negative triangles
- 140: dt=0.9900, 29 negative triangles
- 141: dt=0.9900, 29 negative triangles
- 142: dt=0.9900, 28 negative triangles
- 143: dt=0.9900, 27 negative triangles
- 144: dt=0.9900, 24 negative triangles
- 145: dt=0.9900, 22 negative triangles
- 146: dt=0.9900, 21 negative triangles
- 147: dt=0.9900, 21 negative triangles
- 148: dt=0.9900, 21 negative triangles
- 149: dt=0.9900, 20 negative triangles
- 150: dt=0.9900, 20 negative triangles
- 151: dt=0.9900, 17 negative triangles
- 152: dt=0.9900, 16 negative triangles
- 153: dt=0.9900, 15 negative triangles
- 154: dt=0.9900, 15 negative triangles
- 155: dt=0.9900, 14 negative triangles
- 156: dt=0.9900, 12 negative triangles
- 157: dt=0.9900, 10 negative triangles
- 158: dt=0.9900, 8 negative triangles
- 159: dt=0.9900, 9 negative triangles
- 160: dt=0.9900, 10 negative triangles
- 161: dt=0.9900, 9 negative triangles
- 162: dt=0.9900, 6 negative triangles
- 163: dt=0.9900, 3 negative triangles
- 164: dt=0.9900, 8 negative triangles
- 165: dt=0.9900, 6 negative triangles
- 166: dt=0.9900, 5 negative triangles
- 167: dt=0.9900, 3 negative triangles
- 168: dt=0.9900, 1 negative triangles
- 169: dt=0.9900, 3 negative triangles
- 170: dt=0.9900, 2 negative triangles
- 171: dt=0.9900, 2 negative triangles
- 172: dt=0.9900, 2 negative triangles
- writing registered surface to ../surf/rh.sphere.reg...
- registration took 1.45 hours
- mris_register utimesec 5653.816489
- mris_register stimesec 6.121069
- mris_register ru_maxrss 222740
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 31608
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 8000
- mris_register ru_oublock 8088
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 446082
- mris_register ru_nivcsw 247110
- FSRUNTIME@ mris_register 1.4538 hours 1 threads
- PIDs (14476 14479) completed and logs appended.
- #--------------------------------------------
- #@# Jacobian white lh Sun Oct 8 02:52:46 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- #--------------------------------------------
- #@# Jacobian white rh Sun Oct 8 02:52:46 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- Waiting for PID 17508 of (17508 17511) to complete...
- Waiting for PID 17511 of (17508 17511) to complete...
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- reading surface from ../surf/lh.white.preaparc...
- writing curvature file ../surf/lh.jacobian_white
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- reading surface from ../surf/rh.white.preaparc...
- writing curvature file ../surf/rh.jacobian_white
- PIDs (17508 17511) completed and logs appended.
- #--------------------------------------------
- #@# AvgCurv lh Sun Oct 8 02:52:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- #--------------------------------------------
- #@# AvgCurv rh Sun Oct 8 02:52:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- Waiting for PID 17578 of (17578 17581) to complete...
- Waiting for PID 17581 of (17578 17581) to complete...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/lh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/lh.avg_curv...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/rh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/rh.avg_curv...
- PIDs (17578 17581) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc lh Sun Oct 8 02:52:50 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- #-----------------------------------------
- #@# Cortical Parc rh Sun Oct 8 02:52:50 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- Waiting for PID 17622 of (17622 17625) to complete...
- Waiting for PID 17625 of (17622 17625) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.8 using min determinant for regularization = 0.006
- 0 singular and 342 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1063 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2702 changed, 116827 examined...
- 001: 650 changed, 11469 examined...
- 002: 141 changed, 3590 examined...
- 003: 41 changed, 850 examined...
- 004: 8 changed, 262 examined...
- 005: 5 changed, 59 examined...
- 006: 2 changed, 28 examined...
- 007: 2 changed, 15 examined...
- 008: 1 changed, 10 examined...
- 009: 1 changed, 5 examined...
- 010: 2 changed, 9 examined...
- 011: 0 changed, 7 examined...
- 269 labels changed using aseg
- 000: 109 total segments, 62 labels (242 vertices) changed
- 001: 47 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 3 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1421 vertices marked for relabeling...
- 1421 labels changed in reclassification.
- writing output to ../label/lh.aparc.annot...
- classification took 0 minutes and 13 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.7 using min determinant for regularization = 0.004
- 0 singular and 309 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1253 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2372 changed, 113646 examined...
- 001: 534 changed, 10606 examined...
- 002: 133 changed, 2966 examined...
- 003: 35 changed, 801 examined...
- 004: 12 changed, 207 examined...
- 005: 9 changed, 79 examined...
- 006: 2 changed, 57 examined...
- 007: 1 changed, 14 examined...
- 008: 0 changed, 7 examined...
- 179 labels changed using aseg
- 000: 102 total segments, 65 labels (241 vertices) changed
- 001: 37 total segments, 0 labels (0 vertices) changed
- 9 filter iterations complete (10 requested, 0 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1722 vertices marked for relabeling...
- 1722 labels changed in reclassification.
- writing output to ../label/rh.aparc.annot...
- classification took 0 minutes and 13 seconds.
- PIDs (17622 17625) completed and logs appended.
- #--------------------------------------------
- #@# Make Pial Surf lh Sun Oct 8 02:53:03 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051180 lh
- #--------------------------------------------
- #@# Make Pial Surf rh Sun Oct 8 02:53:03 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051180 rh
- Waiting for PID 17674 of (17674 17678) to complete...
- Waiting for PID 17678 of (17674 17678) to complete...
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051180 lh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- 15848 bright wm thresholded.
- 1559 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.orig...
- computing class statistics...
- border white: 209327 voxels (1.25%)
- border gray 263634 voxels (1.57%)
- WM (95.0): 95.5 +- 9.7 [70.0 --> 110.0]
- GM (64.0) : 64.0 +- 11.8 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 49.2 (was 70)
- setting MAX_BORDER_WHITE to 111.7 (was 105)
- setting MIN_BORDER_WHITE to 61.0 (was 85)
- setting MAX_CSF to 37.5 (was 40)
- setting MAX_GRAY to 92.3 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 49.2 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 25.7 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-9.6, GM=61+-7.8
- mean inside = 90.3, mean outside = 69.1
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.92 +- 0.28 (0.03-->8.25) (max @ vno 42768 --> 48761)
- face area 0.35 +- 0.18 (0.00-->5.45)
- mean absolute distance = 0.50 +- 0.76
- 2312 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 44 points - only 0.00% unknown
- deleting segment 1 with 98 points - only 0.00% unknown
- deleting segment 2 with 424 points - only 0.00% unknown
- deleting segment 3 with 8 points - only 0.00% unknown
- deleting segment 5 with 27 points - only 0.00% unknown
- deleting segment 6 with 16 points - only 0.00% unknown
- deleting segment 7 with 123 points - only 0.00% unknown
- deleting segment 8 with 13 points - only 0.00% unknown
- deleting segment 9 with 10 points - only 0.00% unknown
- deleting segment 10 with 5 points - only 0.00% unknown
- deleting segment 11 with 475 points - only 0.00% unknown
- deleting segment 13 with 10 points - only 0.00% unknown
- deleting segment 14 with 23 points - only 0.00% unknown
- deleting segment 15 with 118 points - only 0.00% unknown
- deleting segment 16 with 132 points - only 0.00% unknown
- deleting segment 17 with 18 points - only 0.00% unknown
- deleting segment 18 with 9 points - only 0.00% unknown
- deleting segment 19 with 9 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 20 with 4 points - only 0.00% unknown
- deleting segment 21 with 10 points - only 0.00% unknown
- mean border=73.6, 138 (138) missing vertices, mean dist 0.3 [0.7 (%13.8)->0.5 (%86.2))]
- %62 local maxima, %32 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.94 +- 0.28 (0.12-->8.29) (max @ vno 48761 --> 42768)
- face area 0.35 +- 0.18 (0.00-->5.14)
- mean absolute distance = 0.32 +- 0.54
- 2064 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=2005742.4, rms=7.981
- 001: dt: 0.5000, sse=1117331.6, rms=4.840 (39.350%)
- 002: dt: 0.5000, sse=970927.4, rms=4.120 (14.875%)
- rms = 4.13, time step reduction 1 of 3 to 0.250...
- 003: dt: 0.2500, sse=816043.6, rms=3.165 (23.173%)
- 004: dt: 0.2500, sse=757957.8, rms=2.689 (15.058%)
- 005: dt: 0.2500, sse=734274.1, rms=2.481 (7.746%)
- 006: dt: 0.2500, sse=723551.5, rms=2.392 (3.567%)
- 007: dt: 0.2500, sse=720660.9, rms=2.330 (2.601%)
- rms = 2.29, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=714938.3, rms=2.288 (1.799%)
- 009: dt: 0.1250, sse=706584.9, rms=2.215 (3.178%)
- rms = 2.19, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=705424.1, rms=2.194 (0.939%)
- positioning took 1.0 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 38 points - only 0.00% unknown
- deleting segment 1 with 88 points - only 0.00% unknown
- deleting segment 2 with 409 points - only 0.00% unknown
- deleting segment 3 with 8 points - only 0.00% unknown
- deleting segment 4 with 15 points - only 0.00% unknown
- deleting segment 5 with 101 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 6 with 4 points - only 0.00% unknown
- deleting segment 7 with 9 points - only 0.00% unknown
- deleting segment 8 with 5 points - only 0.00% unknown
- deleting segment 9 with 191 points - only 0.00% unknown
- deleting segment 10 with 7 points - only 0.00% unknown
- deleting segment 11 with 6 points - only 0.00% unknown
- deleting segment 12 with 19 points - only 0.00% unknown
- deleting segment 13 with 70 points - only 0.00% unknown
- deleting segment 14 with 7 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 15 with 1 points - only 0.00% unknown
- deleting segment 16 with 13 points - only 0.00% unknown
- deleting segment 17 with 5 points - only 0.00% unknown
- deleting segment 18 with 9 points - only 0.00% unknown
- deleting segment 19 with 9 points - only 0.00% unknown
- deleting segment 20 with 5 points - only 0.00% unknown
- mean border=77.3, 120 (35) missing vertices, mean dist -0.2 [0.3 (%76.0)->0.3 (%24.0))]
- %76 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.93 +- 0.27 (0.06-->9.00) (max @ vno 48761 --> 42768)
- face area 0.36 +- 0.19 (0.00-->5.81)
- mean absolute distance = 0.23 +- 0.40
- 2428 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1176592.5, rms=5.024
- 011: dt: 0.5000, sse=881908.2, rms=3.433 (31.663%)
- rms = 3.75, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=757461.9, rms=2.502 (27.135%)
- 013: dt: 0.2500, sse=711363.1, rms=2.017 (19.387%)
- 014: dt: 0.2500, sse=694395.8, rms=1.853 (8.094%)
- rms = 1.83, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=692966.6, rms=1.826 (1.492%)
- 016: dt: 0.1250, sse=684552.4, rms=1.725 (5.505%)
- rms = 1.71, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=716368.5, rms=1.708 (0.976%)
- positioning took 0.7 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 42 points - only 0.00% unknown
- deleting segment 1 with 87 points - only 0.00% unknown
- deleting segment 2 with 416 points - only 0.00% unknown
- deleting segment 3 with 8 points - only 0.00% unknown
- deleting segment 4 with 18 points - only 0.00% unknown
- deleting segment 5 with 9 points - only 0.00% unknown
- deleting segment 6 with 100 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 7 with 1 points - only 0.00% unknown
- deleting segment 8 with 8 points - only 0.00% unknown
- deleting segment 9 with 5 points - only 0.00% unknown
- deleting segment 10 with 307 points - only 0.00% unknown
- deleting segment 11 with 7 points - only 0.00% unknown
- deleting segment 13 with 20 points - only 0.00% unknown
- deleting segment 14 with 103 points - only 0.00% unknown
- deleting segment 15 with 36 points - only 0.00% unknown
- deleting segment 16 with 17 points - only 0.00% unknown
- deleting segment 17 with 10 points - only 0.00% unknown
- deleting segment 18 with 31 points - only 0.00% unknown
- deleting segment 19 with 9 points - only 0.00% unknown
- deleting segment 20 with 11 points - only 0.00% unknown
- deleting segment 21 with 5 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 22 with 1 points - only 0.00% unknown
- mean border=79.2, 152 (29) missing vertices, mean dist -0.1 [0.2 (%63.7)->0.2 (%36.3))]
- %81 local maxima, %13 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.93 +- 0.27 (0.06-->9.10) (max @ vno 48761 --> 42768)
- face area 0.36 +- 0.18 (0.00-->6.10)
- mean absolute distance = 0.22 +- 0.35
- 2519 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=826922.7, rms=2.882
- rms = 3.13, time step reduction 1 of 3 to 0.250...
- 018: dt: 0.2500, sse=707833.4, rms=2.094 (27.324%)
- 019: dt: 0.2500, sse=670876.1, rms=1.626 (22.342%)
- rms = 1.60, time step reduction 2 of 3 to 0.125...
- 020: dt: 0.2500, sse=667835.1, rms=1.603 (1.412%)
- 021: dt: 0.1250, sse=665863.2, rms=1.512 (5.682%)
- rms = 1.50, time step reduction 3 of 3 to 0.062...
- 022: dt: 0.1250, sse=660176.6, rms=1.505 (0.512%)
- positioning took 0.5 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 45 points - only 0.00% unknown
- deleting segment 1 with 87 points - only 0.00% unknown
- deleting segment 2 with 410 points - only 0.00% unknown
- deleting segment 3 with 8 points - only 0.00% unknown
- deleting segment 4 with 19 points - only 0.00% unknown
- deleting segment 5 with 9 points - only 0.00% unknown
- deleting segment 6 with 100 points - only 0.00% unknown
- deleting segment 7 with 8 points - only 0.00% unknown
- deleting segment 8 with 331 points - only 0.00% unknown
- deleting segment 9 with 5 points - only 0.00% unknown
- deleting segment 10 with 7 points - only 0.00% unknown
- deleting segment 12 with 20 points - only 0.00% unknown
- deleting segment 13 with 69 points - only 0.00% unknown
- deleting segment 14 with 103 points - only 0.00% unknown
- deleting segment 15 with 18 points - only 0.00% unknown
- deleting segment 16 with 21 points - only 0.00% unknown
- deleting segment 17 with 67 points - only 0.00% unknown
- deleting segment 18 with 9 points - only 0.00% unknown
- deleting segment 19 with 11 points - only 0.00% unknown
- deleting segment 20 with 5 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 21 with 1 points - only 0.00% unknown
- mean border=79.9, 168 (28) missing vertices, mean dist -0.0 [0.2 (%53.2)->0.2 (%46.8))]
- %84 local maxima, %11 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=676349.8, rms=1.773
- rms = 2.15, time step reduction 1 of 3 to 0.250...
- 023: dt: 0.2500, sse=647759.9, rms=1.345 (24.119%)
- 024: dt: 0.2500, sse=637986.2, rms=1.191 (11.464%)
- rms = 1.21, time step reduction 2 of 3 to 0.125...
- rms = 1.18, time step reduction 3 of 3 to 0.062...
- 025: dt: 0.1250, sse=636106.8, rms=1.177 (1.215%)
- positioning took 0.4 minutes
- generating cortex label...
- 15 non-cortical segments detected
- only using segment with 7404 vertices
- erasing segment 1 (vno[0] = 40160)
- erasing segment 2 (vno[0] = 46924)
- erasing segment 3 (vno[0] = 54033)
- erasing segment 4 (vno[0] = 62881)
- erasing segment 5 (vno[0] = 67474)
- erasing segment 6 (vno[0] = 68159)
- erasing segment 7 (vno[0] = 71142)
- erasing segment 8 (vno[0] = 71172)
- erasing segment 9 (vno[0] = 75227)
- erasing segment 10 (vno[0] = 76556)
- erasing segment 11 (vno[0] = 77362)
- erasing segment 12 (vno[0] = 80120)
- erasing segment 13 (vno[0] = 80976)
- erasing segment 14 (vno[0] = 84311)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.area
- vertex spacing 0.92 +- 0.28 (0.03-->9.21) (max @ vno 42768 --> 48761)
- face area 0.36 +- 0.18 (0.00-->6.22)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 1 with 26 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 2 with 2 points - only 0.00% unknown
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=47.3, 134 (134) missing vertices, mean dist 2.0 [1.3 (%0.0)->2.9 (%100.0))]
- %13 local maxima, %51 large gradients and %30 min vals, 540 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=24879024.0, rms=33.093
- 001: dt: 0.0500, sse=21771340.0, rms=30.902 (6.619%)
- 002: dt: 0.0500, sse=19528688.0, rms=29.220 (5.446%)
- 003: dt: 0.0500, sse=17801180.0, rms=27.854 (4.674%)
- 004: dt: 0.0500, sse=16404529.0, rms=26.699 (4.147%)
- 005: dt: 0.0500, sse=15230027.0, rms=25.687 (3.789%)
- 006: dt: 0.0500, sse=14216852.0, rms=24.781 (3.527%)
- 007: dt: 0.0500, sse=13327983.0, rms=23.958 (3.321%)
- 008: dt: 0.0500, sse=12536658.0, rms=23.201 (3.161%)
- 009: dt: 0.0500, sse=11824540.0, rms=22.497 (3.032%)
- 010: dt: 0.0500, sse=11178918.0, rms=21.840 (2.922%)
- positioning took 0.8 minutes
- mean border=47.2, 94 (61) missing vertices, mean dist 1.7 [0.5 (%0.1)->2.4 (%99.9))]
- %14 local maxima, %51 large gradients and %30 min vals, 511 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=11826990.0, rms=22.500
- 011: dt: 0.0500, sse=11234159.0, rms=21.897 (2.678%)
- 012: dt: 0.0500, sse=10690918.0, rms=21.330 (2.590%)
- 013: dt: 0.0500, sse=10191602.0, rms=20.795 (2.508%)
- 014: dt: 0.0500, sse=9732344.0, rms=20.291 (2.426%)
- 015: dt: 0.0500, sse=9309324.0, rms=19.814 (2.347%)
- 016: dt: 0.0500, sse=8918879.0, rms=19.364 (2.271%)
- 017: dt: 0.0500, sse=8558502.0, rms=18.940 (2.194%)
- 018: dt: 0.0500, sse=8226052.5, rms=18.539 (2.116%)
- 019: dt: 0.0500, sse=7918856.0, rms=18.161 (2.040%)
- 020: dt: 0.0500, sse=7634757.0, rms=17.804 (1.966%)
- positioning took 0.8 minutes
- mean border=47.0, 118 (49) missing vertices, mean dist 1.5 [0.1 (%1.6)->2.2 (%98.4))]
- %14 local maxima, %51 large gradients and %30 min vals, 475 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=7749030.0, rms=17.954
- 021: dt: 0.0500, sse=7478856.5, rms=17.611 (1.913%)
- 022: dt: 0.0500, sse=7229933.0, rms=17.289 (1.831%)
- 023: dt: 0.0500, sse=6998490.5, rms=16.983 (1.767%)
- 024: dt: 0.0500, sse=6784669.5, rms=16.696 (1.691%)
- 025: dt: 0.0500, sse=6586750.0, rms=16.425 (1.620%)
- 026: dt: 0.0500, sse=6402789.0, rms=16.170 (1.556%)
- 027: dt: 0.0500, sse=6230863.0, rms=15.927 (1.500%)
- 028: dt: 0.0500, sse=6068825.0, rms=15.695 (1.458%)
- 029: dt: 0.0500, sse=5915696.5, rms=15.472 (1.419%)
- 030: dt: 0.0500, sse=5770533.0, rms=15.258 (1.385%)
- positioning took 0.8 minutes
- mean border=47.0, 142 (39) missing vertices, mean dist 1.3 [0.1 (%9.3)->2.1 (%90.7))]
- %15 local maxima, %51 large gradients and %29 min vals, 448 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=5873479.5, rms=15.411
- 031: dt: 0.5000, sse=4853527.0, rms=13.831 (10.251%)
- 032: dt: 0.5000, sse=4167733.0, rms=12.649 (8.542%)
- 033: dt: 0.5000, sse=3644449.5, rms=11.670 (7.745%)
- 034: dt: 0.5000, sse=3260748.8, rms=10.887 (6.708%)
- 035: dt: 0.5000, sse=2952561.5, rms=10.217 (6.155%)
- 036: dt: 0.5000, sse=2720892.5, rms=9.677 (5.289%)
- 037: dt: 0.5000, sse=2522305.0, rms=9.192 (5.008%)
- 038: dt: 0.5000, sse=2353309.2, rms=8.755 (4.753%)
- 039: dt: 0.5000, sse=2201584.8, rms=8.348 (4.651%)
- 040: dt: 0.5000, sse=2068137.4, rms=7.970 (4.527%)
- 041: dt: 0.5000, sse=1953568.6, rms=7.635 (4.199%)
- 042: dt: 0.5000, sse=1868765.0, rms=7.373 (3.430%)
- 043: dt: 0.5000, sse=1795425.4, rms=7.144 (3.107%)
- 044: dt: 0.5000, sse=1747018.9, rms=6.984 (2.247%)
- 045: dt: 0.5000, sse=1700391.1, rms=6.832 (2.171%)
- 046: dt: 0.5000, sse=1671698.9, rms=6.732 (1.469%)
- 047: dt: 0.5000, sse=1641744.9, rms=6.631 (1.500%)
- 048: dt: 0.5000, sse=1623427.1, rms=6.565 (0.994%)
- 049: dt: 0.5000, sse=1600783.1, rms=6.488 (1.175%)
- rms = 6.45, time step reduction 1 of 3 to 0.250...
- 050: dt: 0.5000, sse=1590221.8, rms=6.446 (0.643%)
- 051: dt: 0.2500, sse=1518045.0, rms=6.156 (4.494%)
- 052: dt: 0.2500, sse=1493737.1, rms=6.065 (1.485%)
- rms = 6.05, time step reduction 2 of 3 to 0.125...
- 053: dt: 0.2500, sse=1490155.9, rms=6.049 (0.256%)
- 054: dt: 0.1250, sse=1476855.0, rms=5.996 (0.890%)
- rms = 5.98, time step reduction 3 of 3 to 0.062...
- 055: dt: 0.1250, sse=1473538.0, rms=5.983 (0.216%)
- positioning took 2.7 minutes
- mean border=45.1, 1315 (12) missing vertices, mean dist 0.3 [0.2 (%39.7)->0.9 (%60.3))]
- %31 local maxima, %36 large gradients and %27 min vals, 268 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1840024.2, rms=6.453
- 056: dt: 0.5000, sse=1675314.0, rms=5.849 (9.355%)
- 057: dt: 0.5000, sse=1593491.4, rms=5.550 (5.125%)
- 058: dt: 0.5000, sse=1575162.5, rms=5.480 (1.257%)
- 059: dt: 0.5000, sse=1529779.4, rms=5.300 (3.275%)
- rms = 5.28, time step reduction 1 of 3 to 0.250...
- 060: dt: 0.5000, sse=1524065.9, rms=5.277 (0.434%)
- 061: dt: 0.2500, sse=1420165.2, rms=4.755 (9.905%)
- 062: dt: 0.2500, sse=1389626.0, rms=4.606 (3.136%)
- rms = 4.57, time step reduction 2 of 3 to 0.125...
- 063: dt: 0.2500, sse=1383448.4, rms=4.574 (0.693%)
- 064: dt: 0.1250, sse=1359976.4, rms=4.448 (2.750%)
- rms = 4.41, time step reduction 3 of 3 to 0.062...
- 065: dt: 0.1250, sse=1353379.4, rms=4.415 (0.749%)
- positioning took 1.3 minutes
- mean border=43.9, 1673 (10) missing vertices, mean dist 0.2 [0.2 (%42.1)->0.6 (%57.9))]
- %43 local maxima, %24 large gradients and %27 min vals, 310 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1480509.5, rms=4.872
- rms = 4.97, time step reduction 1 of 3 to 0.250...
- 066: dt: 0.2500, sse=1437494.9, rms=4.661 (4.332%)
- 067: dt: 0.2500, sse=1409520.9, rms=4.521 (3.007%)
- 068: dt: 0.2500, sse=1395624.4, rms=4.458 (1.383%)
- rms = 4.41, time step reduction 2 of 3 to 0.125...
- 069: dt: 0.2500, sse=1385017.6, rms=4.411 (1.060%)
- 070: dt: 0.1250, sse=1365786.6, rms=4.304 (2.422%)
- rms = 4.26, time step reduction 3 of 3 to 0.062...
- 071: dt: 0.1250, sse=1357065.2, rms=4.261 (1.009%)
- positioning took 0.9 minutes
- mean border=43.3, 3549 (10) missing vertices, mean dist 0.1 [0.2 (%45.9)->0.5 (%54.1))]
- %46 local maxima, %20 large gradients and %26 min vals, 293 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- writing smoothed curvature to lh.curv.pial
- 000: dt: 0.0000, sse=1390985.4, rms=4.395
- rms = 4.55, time step reduction 1 of 3 to 0.250...
- 072: dt: 0.2500, sse=1368591.5, rms=4.277 (2.705%)
- 073: dt: 0.2500, sse=1346883.8, rms=4.176 (2.357%)
- 074: dt: 0.2500, sse=1336001.4, rms=4.125 (1.208%)
- 075: dt: 0.2500, sse=1322526.8, rms=4.065 (1.460%)
- rms = 4.06, time step reduction 2 of 3 to 0.125...
- 076: dt: 0.2500, sse=1319853.6, rms=4.056 (0.213%)
- 077: dt: 0.1250, sse=1296956.6, rms=3.921 (3.348%)
- rms = 3.89, time step reduction 3 of 3 to 0.062...
- 078: dt: 0.1250, sse=1291095.8, rms=3.891 (0.765%)
- positioning took 1.1 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.curv.pial
- writing smoothed area to lh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.area.pial
- vertex spacing 1.11 +- 0.53 (0.05-->9.27) (max @ vno 41822 --> 42786)
- face area 0.48 +- 0.42 (0.00-->6.56)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 116827 vertices processed
- 25000 of 116827 vertices processed
- 50000 of 116827 vertices processed
- 75000 of 116827 vertices processed
- 100000 of 116827 vertices processed
- 0 of 116827 vertices processed
- 25000 of 116827 vertices processed
- 50000 of 116827 vertices processed
- 75000 of 116827 vertices processed
- 100000 of 116827 vertices processed
- thickness calculation complete, 1015:5017 truncations.
- 18467 vertices at 0 distance
- 62317 vertices at 1 distance
- 72716 vertices at 2 distance
- 42757 vertices at 3 distance
- 16508 vertices at 4 distance
- 5405 vertices at 5 distance
- 1888 vertices at 6 distance
- 838 vertices at 7 distance
- 391 vertices at 8 distance
- 196 vertices at 9 distance
- 120 vertices at 10 distance
- 73 vertices at 11 distance
- 45 vertices at 12 distance
- 48 vertices at 13 distance
- 24 vertices at 14 distance
- 25 vertices at 15 distance
- 31 vertices at 16 distance
- 37 vertices at 17 distance
- 31 vertices at 18 distance
- 16 vertices at 19 distance
- 17 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.thickness
- positioning took 14.6 minutes
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0051180 rh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- 15848 bright wm thresholded.
- 1559 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.orig...
- computing class statistics...
- border white: 209327 voxels (1.25%)
- border gray 263634 voxels (1.57%)
- WM (95.0): 95.5 +- 9.7 [70.0 --> 110.0]
- GM (64.0) : 64.0 +- 11.8 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 46.2 (was 70)
- setting MAX_BORDER_WHITE to 109.7 (was 105)
- setting MIN_BORDER_WHITE to 58.0 (was 85)
- setting MAX_CSF to 34.5 (was 40)
- setting MAX_GRAY to 90.3 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 46.2 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 22.7 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=100+-9.6, GM=58+-9.6
- mean inside = 89.4, mean outside = 67.6
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.92 +- 0.27 (0.05-->4.69) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.18 (0.00-->3.98)
- mean absolute distance = 0.50 +- 0.77
- 2510 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 1 with 1 points - only 0.00% unknown
- deleting segment 2 with 7 points - only 0.00% unknown
- deleting segment 4 with 9 points - only 0.00% unknown
- deleting segment 5 with 10 points - only 0.00% unknown
- deleting segment 6 with 28 points - only 0.00% unknown
- deleting segment 7 with 42 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 9 with 2 points - only 0.00% unknown
- deleting segment 10 with 605 points - only 0.00% unknown
- deleting segment 11 with 97 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 12 with 1 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 13 with 1 points - only 0.00% unknown
- deleting segment 14 with 13 points - only 0.00% unknown
- mean border=71.7, 130 (129) missing vertices, mean dist 0.3 [0.6 (%14.9)->0.5 (%85.1))]
- %61 local maxima, %34 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.94 +- 0.28 (0.08-->4.70) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.18 (0.00-->4.40)
- mean absolute distance = 0.32 +- 0.56
- 2368 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=2055971.0, rms=8.248
- 001: dt: 0.5000, sse=1172333.2, rms=5.203 (36.921%)
- 002: dt: 0.5000, sse=1012662.8, rms=4.452 (14.443%)
- 003: dt: 0.5000, sse=1006078.8, rms=4.382 (1.566%)
- 004: dt: 0.5000, sse=965209.6, rms=4.204 (4.070%)
- rms = 4.30, time step reduction 1 of 3 to 0.250...
- 005: dt: 0.2500, sse=792310.1, rms=3.071 (26.944%)
- 006: dt: 0.2500, sse=744137.7, rms=2.620 (14.680%)
- 007: dt: 0.2500, sse=720296.9, rms=2.451 (6.461%)
- rms = 2.42, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=718857.6, rms=2.425 (1.058%)
- 009: dt: 0.1250, sse=720304.4, rms=2.299 (5.207%)
- rms = 2.27, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=702890.1, rms=2.275 (1.034%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 1 with 1 points - only 0.00% unknown
- deleting segment 2 with 8 points - only 0.00% unknown
- deleting segment 3 with 13 points - only 0.00% unknown
- deleting segment 4 with 22 points - only 0.00% unknown
- deleting segment 5 with 41 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- removing 2 vertex label from ripped group
- deleting segment 7 with 2 points - only 0.00% unknown
- deleting segment 8 with 219 points - only 0.00% unknown
- deleting segment 9 with 45 points - only 0.00% unknown
- deleting segment 10 with 39 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 11 with 1 points - only 0.00% unknown
- mean border=75.5, 202 (37) missing vertices, mean dist -0.2 [0.3 (%74.4)->0.3 (%25.6))]
- %74 local maxima, %21 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.93 +- 0.28 (0.08-->4.64) (max @ vno 11577 --> 111992)
- face area 0.37 +- 0.19 (0.00-->4.88)
- mean absolute distance = 0.24 +- 0.41
- 2230 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1201195.8, rms=5.230
- 011: dt: 0.5000, sse=906251.6, rms=3.683 (29.579%)
- rms = 4.07, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=769083.2, rms=2.696 (26.805%)
- 013: dt: 0.2500, sse=718650.2, rms=2.189 (18.795%)
- 014: dt: 0.2500, sse=703694.6, rms=1.981 (9.523%)
- rms = 1.93, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=694369.2, rms=1.933 (2.389%)
- 016: dt: 0.1250, sse=681529.3, rms=1.799 (6.936%)
- rms = 1.78, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=681051.4, rms=1.781 (1.011%)
- positioning took 0.7 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 1 with 2 points - only 0.00% unknown
- deleting segment 2 with 11 points - only 0.00% unknown
- deleting segment 3 with 10 points - only 0.00% unknown
- deleting segment 4 with 22 points - only 0.00% unknown
- deleting segment 5 with 43 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- deleting segment 7 with 2 points - only 0.00% unknown
- deleting segment 8 with 454 points - only 0.00% unknown
- deleting segment 9 with 77 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 10 with 1 points - only 0.00% unknown
- mean border=77.3, 222 (20) missing vertices, mean dist -0.1 [0.2 (%63.1)->0.2 (%36.9))]
- %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.93 +- 0.28 (0.09-->4.58) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.19 (0.00-->4.84)
- mean absolute distance = 0.22 +- 0.36
- 2826 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=795858.5, rms=2.983
- rms = 3.29, time step reduction 1 of 3 to 0.250...
- 018: dt: 0.2500, sse=706713.2, rms=2.187 (26.695%)
- 019: dt: 0.2500, sse=669342.1, rms=1.704 (22.086%)
- 020: dt: 0.2500, sse=666313.4, rms=1.653 (3.004%)
- rms = 1.63, time step reduction 2 of 3 to 0.125...
- 021: dt: 0.2500, sse=661299.4, rms=1.634 (1.118%)
- 022: dt: 0.1250, sse=656219.2, rms=1.562 (4.436%)
- rms = 1.56, time step reduction 3 of 3 to 0.062...
- 023: dt: 0.1250, sse=654968.4, rms=1.557 (0.293%)
- positioning took 0.6 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- deleting segment 1 with 5 points - only 0.00% unknown
- deleting segment 2 with 12 points - only 0.00% unknown
- deleting segment 3 with 13 points - only 0.00% unknown
- deleting segment 4 with 26 points - only 0.00% unknown
- deleting segment 5 with 43 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 6 with 2 points - only 0.00% unknown
- deleting segment 7 with 493 points - only 0.00% unknown
- deleting segment 8 with 74 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 9 with 2 points - only 0.00% unknown
- deleting segment 10 with 5 points - only 0.00% unknown
- mean border=78.1, 231 (15) missing vertices, mean dist -0.0 [0.2 (%53.2)->0.2 (%46.8))]
- %82 local maxima, %13 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=670574.4, rms=1.809
- rms = 2.22, time step reduction 1 of 3 to 0.250...
- 024: dt: 0.2500, sse=639825.4, rms=1.360 (24.842%)
- 025: dt: 0.2500, sse=629566.9, rms=1.181 (13.120%)
- rms = 1.18, time step reduction 2 of 3 to 0.125...
- 026: dt: 0.2500, sse=627862.0, rms=1.181 (0.021%)
- rms = 1.16, time step reduction 3 of 3 to 0.062...
- 027: dt: 0.1250, sse=625024.2, rms=1.158 (1.995%)
- positioning took 0.4 minutes
- generating cortex label...
- 15 non-cortical segments detected
- only using segment with 7351 vertices
- erasing segment 1 (vno[0] = 46577)
- erasing segment 2 (vno[0] = 47745)
- erasing segment 3 (vno[0] = 66466)
- erasing segment 4 (vno[0] = 73131)
- erasing segment 5 (vno[0] = 76209)
- erasing segment 6 (vno[0] = 76926)
- erasing segment 7 (vno[0] = 77640)
- erasing segment 8 (vno[0] = 78959)
- erasing segment 9 (vno[0] = 80193)
- erasing segment 10 (vno[0] = 80210)
- erasing segment 11 (vno[0] = 81335)
- erasing segment 12 (vno[0] = 81359)
- erasing segment 13 (vno[0] = 82525)
- erasing segment 14 (vno[0] = 85334)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.area
- vertex spacing 0.93 +- 0.28 (0.05-->4.58) (max @ vno 11577 --> 111992)
- face area 0.36 +- 0.18 (0.00-->4.50)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 1 with 24 points - only 0.00% unknown
- deleting segment 2 with 10 points - only 0.00% unknown
- deleting segment 3 with 8 points - only 0.00% unknown
- deleting segment 4 with 9 points - only 0.00% unknown
- deleting segment 5 with 12 points - only 0.00% unknown
- deleting segment 6 with 43 points - only 0.00% unknown
- deleting segment 7 with 20 points - only 0.00% unknown
- deleting segment 8 with 8 points - only 0.00% unknown
- deleting segment 9 with 40 points - only 0.00% unknown
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=44.7, 132 (132) missing vertices, mean dist 1.9 [0.2 (%0.0)->2.7 (%100.0))]
- %11 local maxima, %55 large gradients and %28 min vals, 510 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=25551458.0, rms=34.064
- 001: dt: 0.0500, sse=22315566.0, rms=31.779 (6.706%)
- 002: dt: 0.0500, sse=19984224.0, rms=30.026 (5.518%)
- 003: dt: 0.0500, sse=18190400.0, rms=28.603 (4.738%)
- 004: dt: 0.0500, sse=16737651.0, rms=27.397 (4.217%)
- 005: dt: 0.0500, sse=15519322.0, rms=26.343 (3.848%)
- 006: dt: 0.0500, sse=14469463.0, rms=25.399 (3.582%)
- 007: dt: 0.0500, sse=13546638.0, rms=24.540 (3.384%)
- 008: dt: 0.0500, sse=12724577.0, rms=23.748 (3.227%)
- 009: dt: 0.0500, sse=11986264.0, rms=23.013 (3.093%)
- 010: dt: 0.0500, sse=11317357.0, rms=22.327 (2.982%)
- positioning took 0.8 minutes
- mean border=44.6, 109 (58) missing vertices, mean dist 1.6 [0.1 (%0.1)->2.3 (%99.9))]
- %12 local maxima, %55 large gradients and %28 min vals, 485 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=11940125.0, rms=22.967
- 011: dt: 0.0500, sse=11328488.0, rms=22.340 (2.733%)
- 012: dt: 0.0500, sse=10769238.0, rms=21.750 (2.640%)
- 013: dt: 0.0500, sse=10257300.0, rms=21.195 (2.549%)
- 014: dt: 0.0500, sse=9787385.0, rms=20.673 (2.463%)
- 015: dt: 0.0500, sse=9355741.0, rms=20.182 (2.378%)
- 016: dt: 0.0500, sse=8959417.0, rms=19.720 (2.290%)
- 017: dt: 0.0500, sse=8595080.0, rms=19.285 (2.205%)
- 018: dt: 0.0500, sse=8260433.0, rms=18.877 (2.117%)
- 019: dt: 0.0500, sse=7951536.5, rms=18.492 (2.039%)
- 020: dt: 0.0500, sse=7666682.5, rms=18.129 (1.959%)
- positioning took 0.8 minutes
- mean border=44.4, 123 (45) missing vertices, mean dist 1.4 [0.1 (%1.8)->2.0 (%98.2))]
- %12 local maxima, %55 large gradients and %28 min vals, 453 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=7786560.5, rms=18.289
- 021: dt: 0.0500, sse=7515880.0, rms=17.941 (1.903%)
- 022: dt: 0.0500, sse=7266642.0, rms=17.614 (1.821%)
- 023: dt: 0.0500, sse=7034518.5, rms=17.304 (1.759%)
- 024: dt: 0.0500, sse=6820697.0, rms=17.014 (1.679%)
- 025: dt: 0.0500, sse=6622948.5, rms=16.741 (1.606%)
- 026: dt: 0.0500, sse=6439381.5, rms=16.483 (1.540%)
- 027: dt: 0.0500, sse=6268249.0, rms=16.239 (1.481%)
- 028: dt: 0.0500, sse=6106597.0, rms=16.005 (1.442%)
- 029: dt: 0.0500, sse=5953916.0, rms=15.780 (1.402%)
- 030: dt: 0.0500, sse=5809576.0, rms=15.565 (1.364%)
- positioning took 0.8 minutes
- mean border=44.4, 158 (41) missing vertices, mean dist 1.2 [0.1 (%11.7)->1.9 (%88.3))]
- %12 local maxima, %55 large gradients and %28 min vals, 455 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=5909006.5, rms=15.713
- 031: dt: 0.5000, sse=4894417.0, rms=14.126 (10.098%)
- 032: dt: 0.5000, sse=4228783.0, rms=12.971 (8.175%)
- 033: dt: 0.5000, sse=3751506.8, rms=12.078 (6.891%)
- 034: dt: 0.5000, sse=3410755.5, rms=11.388 (5.706%)
- 035: dt: 0.5000, sse=3133389.0, rms=10.796 (5.199%)
- 036: dt: 0.5000, sse=2897544.8, rms=10.262 (4.946%)
- 037: dt: 0.5000, sse=2678746.0, rms=9.744 (5.050%)
- 038: dt: 0.5000, sse=2487268.0, rms=9.266 (4.911%)
- 039: dt: 0.5000, sse=2316400.5, rms=8.820 (4.813%)
- 040: dt: 0.5000, sse=2179479.5, rms=8.442 (4.276%)
- 041: dt: 0.5000, sse=2059213.6, rms=8.101 (4.046%)
- 042: dt: 0.5000, sse=1971863.8, rms=7.841 (3.210%)
- 043: dt: 0.5000, sse=1895687.1, rms=7.608 (2.974%)
- 044: dt: 0.5000, sse=1844429.5, rms=7.445 (2.131%)
- 045: dt: 0.5000, sse=1795661.1, rms=7.290 (2.094%)
- 046: dt: 0.5000, sse=1763132.1, rms=7.182 (1.475%)
- 047: dt: 0.5000, sse=1730113.0, rms=7.072 (1.526%)
- 048: dt: 0.5000, sse=1714856.2, rms=7.019 (0.751%)
- 049: dt: 0.5000, sse=1692463.1, rms=6.945 (1.053%)
- rms = 6.91, time step reduction 1 of 3 to 0.250...
- 050: dt: 0.5000, sse=1683111.9, rms=6.911 (0.502%)
- 051: dt: 0.2500, sse=1615149.5, rms=6.647 (3.817%)
- 052: dt: 0.2500, sse=1593760.5, rms=6.570 (1.160%)
- rms = 6.56, time step reduction 2 of 3 to 0.125...
- 053: dt: 0.2500, sse=1591229.9, rms=6.559 (0.164%)
- rms = 6.51, time step reduction 3 of 3 to 0.062...
- 054: dt: 0.1250, sse=1578692.8, rms=6.510 (0.747%)
- positioning took 2.5 minutes
- mean border=42.7, 1490 (21) missing vertices, mean dist 0.3 [0.2 (%43.0)->1.0 (%57.0))]
- %28 local maxima, %40 large gradients and %26 min vals, 218 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1897875.6, rms=6.807
- 055: dt: 0.5000, sse=1744993.8, rms=6.266 (7.951%)
- 056: dt: 0.5000, sse=1666671.9, rms=5.995 (4.321%)
- 057: dt: 0.5000, sse=1642386.2, rms=5.906 (1.497%)
- 058: dt: 0.5000, sse=1597712.9, rms=5.739 (2.815%)
- 059: dt: 0.5000, sse=1584272.8, rms=5.686 (0.937%)
- 060: dt: 0.5000, sse=1550564.6, rms=5.554 (2.309%)
- rms = 5.51, time step reduction 1 of 3 to 0.250...
- 061: dt: 0.5000, sse=1541825.5, rms=5.514 (0.722%)
- 062: dt: 0.2500, sse=1446424.2, rms=5.044 (8.535%)
- 063: dt: 0.2500, sse=1416262.5, rms=4.903 (2.790%)
- rms = 4.89, time step reduction 2 of 3 to 0.125...
- 064: dt: 0.2500, sse=1413548.4, rms=4.887 (0.321%)
- 065: dt: 0.1250, sse=1395087.8, rms=4.792 (1.946%)
- rms = 4.77, time step reduction 3 of 3 to 0.062...
- 066: dt: 0.1250, sse=1390260.9, rms=4.769 (0.473%)
- positioning took 1.5 minutes
- mean border=41.5, 1826 (19) missing vertices, mean dist 0.2 [0.2 (%44.2)->0.6 (%55.8))]
- %40 local maxima, %27 large gradients and %26 min vals, 216 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1524774.5, rms=5.169
- rms = 5.22, time step reduction 1 of 3 to 0.250...
- 067: dt: 0.2500, sse=1483504.4, rms=4.973 (3.790%)
- 068: dt: 0.2500, sse=1455837.8, rms=4.839 (2.693%)
- 069: dt: 0.2500, sse=1443793.8, rms=4.787 (1.073%)
- 070: dt: 0.2500, sse=1432202.4, rms=4.737 (1.047%)
- rms = 4.70, time step reduction 2 of 3 to 0.125...
- 071: dt: 0.2500, sse=1424437.4, rms=4.704 (0.698%)
- 072: dt: 0.1250, sse=1404219.5, rms=4.598 (2.252%)
- rms = 4.57, time step reduction 3 of 3 to 0.062...
- 073: dt: 0.1250, sse=1397932.5, rms=4.568 (0.653%)
- positioning took 1.0 minutes
- mean border=40.8, 3428 (18) missing vertices, mean dist 0.1 [0.2 (%46.6)->0.5 (%53.4))]
- %44 local maxima, %22 large gradients and %25 min vals, 212 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- writing smoothed curvature to rh.curv.pial
- 000: dt: 0.0000, sse=1433110.1, rms=4.697
- rms = 4.83, time step reduction 1 of 3 to 0.250...
- 074: dt: 0.2500, sse=1410471.1, rms=4.582 (2.461%)
- 075: dt: 0.2500, sse=1391009.5, rms=4.494 (1.919%)
- rms = 4.45, time step reduction 2 of 3 to 0.125...
- 076: dt: 0.2500, sse=1380710.4, rms=4.451 (0.963%)
- 077: dt: 0.1250, sse=1362893.8, rms=4.352 (2.215%)
- rms = 4.32, time step reduction 3 of 3 to 0.062...
- 078: dt: 0.1250, sse=1356395.0, rms=4.320 (0.742%)
- positioning took 0.7 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.curv.pial
- writing smoothed area to rh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.area.pial
- vertex spacing 1.12 +- 0.54 (0.05-->9.26) (max @ vno 69070 --> 69069)
- face area 0.50 +- 0.45 (0.00-->7.62)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 113646 vertices processed
- 25000 of 113646 vertices processed
- 50000 of 113646 vertices processed
- 75000 of 113646 vertices processed
- 100000 of 113646 vertices processed
- 0 of 113646 vertices processed
- 25000 of 113646 vertices processed
- 50000 of 113646 vertices processed
- 75000 of 113646 vertices processed
- 100000 of 113646 vertices processed
- thickness calculation complete, 834:4599 truncations.
- 19005 vertices at 0 distance
- 62917 vertices at 1 distance
- 70165 vertices at 2 distance
- 40860 vertices at 3 distance
- 14759 vertices at 4 distance
- 4574 vertices at 5 distance
- 1545 vertices at 6 distance
- 601 vertices at 7 distance
- 276 vertices at 8 distance
- 166 vertices at 9 distance
- 130 vertices at 10 distance
- 105 vertices at 11 distance
- 79 vertices at 12 distance
- 49 vertices at 13 distance
- 35 vertices at 14 distance
- 31 vertices at 15 distance
- 20 vertices at 16 distance
- 27 vertices at 17 distance
- 21 vertices at 18 distance
- 26 vertices at 19 distance
- 29 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.thickness
- positioning took 14.1 minutes
- PIDs (17674 17678) completed and logs appended.
- #--------------------------------------------
- #@# Surf Volume lh Sun Oct 8 03:07:39 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- mris_calc -o lh.area.mid lh.area add lh.area.pial
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o lh.area.mid lh.area.mid div 2
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0051180 lh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- #@# 0051180 lh 275690
-
- vertexvol Done
- #--------------------------------------------
- #@# Surf Volume rh Sun Oct 8 03:07:42 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf
- mris_calc -o rh.area.mid rh.area add rh.area.pial
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o rh.area.mid rh.area.mid div 2
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0051180 rh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- #@# 0051180 rh 261441
-
- vertexvol Done
- #--------------------------------------------
- #@# Cortical ribbon mask Sun Oct 8 03:07:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon 0051180
- SUBJECTS_DIR is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- loading input data...
- computing distance to left white surface
- computing distance to left pial surface
- computing distance to right white surface
- computing distance to right pial surface
- hemi masks overlap voxels = 639
- writing volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/ribbon.mgz
- mris_volmask took 13.51 minutes
- writing ribbon files
- #-----------------------------------------
- #@# Parcellation Stats lh Sun Oct 8 03:21:15 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051180 lh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051180 lh pial
- #-----------------------------------------
- #@# Parcellation Stats rh Sun Oct 8 03:21:15 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051180 rh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051180 rh pial
- Waiting for PID 19159 of (19159 19162 19165 19168) to complete...
- Waiting for PID 19162 of (19159 19162 19165 19168) to complete...
- Waiting for PID 19165 of (19159 19162 19165 19168) to complete...
- Waiting for PID 19168 of (19159 19162 19165 19168) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051180 lh white
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 952 688 2024 3.043 0.421 0.098 0.018 5 0.7 bankssts
- 840 557 2578 3.725 0.555 0.125 0.021 12 0.7 caudalanteriorcingulate
- 3224 2288 8110 3.077 0.677 0.120 0.027 35 3.8 caudalmiddlefrontal
- 1753 1276 2961 2.092 0.485 0.155 0.037 29 2.7 cuneus
- 622 469 2237 3.059 0.939 0.148 0.044 10 1.3 entorhinal
- 3500 2589 8970 2.891 0.724 0.138 0.033 61 5.0 fusiform
- 5169 3765 14221 2.961 0.704 0.136 0.036 88 7.6 inferiorparietal
- 3174 2191 6552 2.415 0.702 0.130 0.040 54 5.4 inferiortemporal
- 1276 840 3075 3.141 0.856 0.120 0.026 14 1.2 isthmuscingulate
- 5498 4040 13154 2.453 0.685 0.151 0.041 108 9.5 lateraloccipital
- 3118 2232 9760 3.395 0.785 0.128 0.030 39 3.9 lateralorbitofrontal
- 3990 2905 7712 2.325 0.787 0.147 0.041 60 6.6 lingual
- 2510 1825 6438 2.965 0.836 0.127 0.030 43 2.8 medialorbitofrontal
- 2653 1878 6600 2.677 0.708 0.145 0.057 84 7.2 middletemporal
- 1122 737 2882 3.195 0.972 0.104 0.032 12 1.4 parahippocampal
- 2292 1584 5756 3.215 0.746 0.113 0.033 31 3.2 paracentral
- 2030 1488 5705 3.110 0.528 0.110 0.023 23 1.8 parsopercularis
- 949 703 3571 3.243 0.761 0.152 0.037 21 1.5 parsorbitalis
- 1601 1133 4363 2.894 0.724 0.126 0.031 23 2.0 parstriangularis
- 1364 1029 1633 1.739 0.473 0.125 0.027 14 1.4 pericalcarine
- 5685 4153 11922 2.401 0.793 0.129 0.032 81 8.1 postcentral
- 1954 1373 5037 3.290 0.572 0.142 0.033 37 3.1 posteriorcingulate
- 7306 5189 18056 2.936 0.609 0.116 0.025 76 7.7 precentral
- 5283 3750 13050 3.061 0.719 0.119 0.022 62 4.9 precuneus
- 1215 874 3216 2.988 0.846 0.139 0.036 20 1.8 rostralanteriorcingulate
- 8024 5871 23131 3.006 0.660 0.137 0.035 140 12.2 rostralmiddlefrontal
- 10252 7258 30586 3.362 0.737 0.119 0.030 117 11.8 superiorfrontal
- 7303 5282 16588 2.614 0.603 0.125 0.028 103 8.8 superiorparietal
- 4803 3320 10487 2.628 0.691 0.117 0.030 63 6.6 superiortemporal
- 5118 3694 13776 3.085 0.711 0.132 0.037 81 8.1 supramarginal
- 426 284 1413 3.258 0.714 0.156 0.038 10 0.8 frontalpole
- 452 334 1243 2.713 0.585 0.130 0.046 5 1.0 temporalpole
- 701 493 1312 2.399 0.509 0.144 0.027 11 0.6 transversetemporal
- 2870 2006 7567 3.327 1.007 0.110 0.034 26 3.9 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0051180 lh pial
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 952 645 2024 3.043 0.421 0.138 0.035 13 1.5 bankssts
- 840 849 2578 3.725 0.555 0.186 0.052 43 1.9 caudalanteriorcingulate
- 3224 2858 8110 3.077 0.677 0.146 0.034 39 4.9 caudalmiddlefrontal
- 1753 1640 2961 2.092 0.485 0.162 0.040 25 3.2 cuneus
- 622 1048 2237 3.059 0.939 0.282 0.062 11 2.2 entorhinal
- 3500 3490 8970 2.891 0.724 0.182 0.047 58 7.3 fusiform
- 5169 5640 14221 2.961 0.704 0.195 0.047 80 12.1 inferiorparietal
- 3174 3234 6552 2.415 0.702 0.194 0.054 65 7.8 inferiortemporal
- 1276 1082 3075 3.141 0.856 0.171 0.049 73 2.9 isthmuscingulate
- 5498 6423 13154 2.453 0.685 0.204 0.045 102 11.9 lateraloccipital
- 3118 3179 9760 3.395 0.785 0.195 0.051 66 8.0 lateralorbitofrontal
- 3990 3846 7712 2.325 0.787 0.179 0.048 66 8.8 lingual
- 2510 2464 6438 2.965 0.836 0.182 0.049 67 5.6 medialorbitofrontal
- 2653 2968 6600 2.677 0.708 0.210 0.069 87 9.5 middletemporal
- 1122 1103 2882 3.195 0.972 0.188 0.062 20 3.7 parahippocampal
- 2292 2014 5756 3.215 0.746 0.152 0.039 42 3.6 paracentral
- 2030 2065 5705 3.110 0.528 0.155 0.033 23 3.0 parsopercularis
- 949 1360 3571 3.243 0.761 0.232 0.049 15 2.3 parsorbitalis
- 1601 1694 4363 2.894 0.724 0.190 0.043 26 3.3 parstriangularis
- 1364 936 1633 1.739 0.473 0.118 0.029 19 1.7 pericalcarine
- 5685 5822 11922 2.401 0.793 0.173 0.040 88 11.0 postcentral
- 1954 1822 5037 3.290 0.572 0.194 0.050 48 4.5 posteriorcingulate
- 7306 6621 18056 2.936 0.609 0.145 0.031 89 10.2 precentral
- 5283 4691 13050 3.061 0.719 0.152 0.034 72 8.6 precuneus
- 1215 1250 3216 2.988 0.846 0.174 0.038 18 2.2 rostralanteriorcingulate
- 8024 8986 23131 3.006 0.660 0.195 0.043 131 17.0 rostralmiddlefrontal
- 10252 10174 30586 3.362 0.737 0.163 0.038 133 18.0 superiorfrontal
- 7303 7345 16588 2.614 0.603 0.174 0.040 104 14.2 superiorparietal
- 4803 4584 10487 2.628 0.691 0.172 0.041 65 9.1 superiortemporal
- 5118 4996 13776 3.085 0.711 0.178 0.046 81 11.1 supramarginal
- 426 561 1413 3.258 0.714 0.209 0.047 5 0.8 frontalpole
- 452 618 1243 2.713 0.585 0.216 0.049 5 1.1 temporalpole
- 701 612 1312 2.399 0.509 0.173 0.039 13 1.2 transversetemporal
- 2870 2118 7567 3.327 1.007 0.167 0.062 86 9.0 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051180 rh white
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 988 709 2111 3.053 0.563 0.105 0.019 8 0.7 bankssts
- 1102 730 2675 2.661 1.089 0.131 0.021 17 0.8 caudalanteriorcingulate
- 3507 2574 8584 2.792 0.627 0.127 0.033 46 5.0 caudalmiddlefrontal
- 1818 1365 3790 2.312 0.625 0.149 0.034 31 2.4 cuneus
- 458 381 2569 3.874 0.506 0.159 0.034 7 0.7 entorhinal
- 3644 2626 8837 2.793 0.658 0.133 0.027 55 4.2 fusiform
- 6217 4473 16912 2.786 0.746 0.129 0.035 103 9.6 inferiorparietal
- 2866 2095 6773 2.599 0.733 0.151 0.051 71 6.8 inferiortemporal
- 1307 906 3609 3.211 1.093 0.138 0.035 19 1.8 isthmuscingulate
- 4942 3732 11564 2.333 0.660 0.155 0.040 92 8.7 lateraloccipital
- 3038 2240 7957 2.974 0.767 0.136 0.030 46 3.8 lateralorbitofrontal
- 3616 2664 7865 2.451 0.817 0.158 0.048 63 8.0 lingual
- 2450 1780 6752 3.069 0.769 0.135 0.035 43 3.7 medialorbitofrontal
- 3378 2391 7378 2.543 0.731 0.145 0.054 100 8.1 middletemporal
- 948 631 2182 2.825 0.842 0.101 0.023 8 0.6 parahippocampal
- 2380 1673 6218 3.085 0.770 0.108 0.020 19 1.9 paracentral
- 1938 1378 4925 2.847 0.626 0.136 0.041 31 3.3 parsopercularis
- 1074 786 3036 2.780 0.783 0.162 0.054 33 2.5 parsorbitalis
- 1757 1253 4095 2.548 0.696 0.119 0.029 24 2.0 parstriangularis
- 1394 1050 1811 1.818 0.474 0.119 0.024 11 1.5 pericalcarine
- 4756 3571 9392 2.211 0.756 0.138 0.035 85 7.8 postcentral
- 2102 1505 5282 2.896 0.938 0.136 0.031 34 2.5 posteriorcingulate
- 6319 4606 13741 2.597 0.649 0.111 0.025 68 6.9 precentral
- 4850 3460 11883 2.901 0.677 0.124 0.026 59 5.4 precuneus
- 853 572 2562 3.924 0.808 0.137 0.034 13 1.3 rostralanteriorcingulate
- 7792 5625 20872 2.853 0.721 0.134 0.036 146 12.1 rostralmiddlefrontal
- 10762 7663 32149 3.348 0.738 0.121 0.029 132 13.0 superiorfrontal
- 6818 5038 15362 2.516 0.634 0.143 0.038 124 11.2 superiorparietal
- 4240 3044 9711 2.640 0.689 0.117 0.032 63 6.3 superiortemporal
- 3947 2929 8718 2.602 0.594 0.132 0.032 63 5.5 supramarginal
- 403 290 1412 3.364 0.602 0.172 0.052 11 0.8 frontalpole
- 605 437 2010 2.888 0.892 0.147 0.056 10 1.6 temporalpole
- 473 336 774 2.180 0.472 0.177 0.042 13 0.8 transversetemporal
- 3155 2298 7881 3.078 1.114 0.105 0.032 28 4.3 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0051180 rh pial
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 988 662 2111 3.053 0.563 0.150 0.040 15 1.8 bankssts
- 1102 1078 2675 2.661 1.089 0.172 0.041 29 1.7 caudalanteriorcingulate
- 3507 3496 8584 2.792 0.627 0.177 0.038 56 6.6 caudalmiddlefrontal
- 1818 1940 3790 2.312 0.625 0.188 0.044 25 3.8 cuneus
- 458 879 2569 3.874 0.506 0.312 0.070 7 1.6 entorhinal
- 3644 3578 8837 2.793 0.658 0.179 0.044 59 7.5 fusiform
- 6217 6986 16912 2.786 0.746 0.197 0.045 91 14.4 inferiorparietal
- 2866 3161 6773 2.599 0.733 0.206 0.058 77 8.2 inferiortemporal
- 1307 1295 3609 3.211 1.093 0.209 0.061 91 3.7 isthmuscingulate
- 4942 5951 11564 2.333 0.660 0.217 0.048 89 11.5 lateraloccipital
- 3038 2975 7957 2.974 0.767 0.185 0.043 58 6.5 lateralorbitofrontal
- 3616 3687 7865 2.451 0.817 0.184 0.044 59 7.2 lingual
- 2450 2651 6752 3.069 0.769 0.190 0.045 45 5.0 medialorbitofrontal
- 3378 3592 7378 2.543 0.731 0.200 0.060 58 10.3 middletemporal
- 948 892 2182 2.825 0.842 0.167 0.041 12 1.7 parahippocampal
- 2380 2142 6218 3.085 0.770 0.149 0.034 29 3.7 paracentral
- 1938 2009 4925 2.847 0.626 0.191 0.049 27 4.7 parsopercularis
- 1074 1448 3036 2.780 0.783 0.247 0.054 20 2.8 parsorbitalis
- 1757 1839 4095 2.548 0.696 0.184 0.042 23 3.6 parstriangularis
- 1394 1049 1811 1.818 0.474 0.125 0.027 17 1.8 pericalcarine
- 4756 5008 9392 2.211 0.756 0.175 0.038 62 8.8 postcentral
- 2102 1988 5282 2.896 0.938 0.173 0.041 49 3.8 posteriorcingulate
- 6319 5845 13741 2.597 0.649 0.145 0.030 69 9.2 precentral
- 4850 4551 11883 2.901 0.677 0.170 0.041 87 9.6 precuneus
- 853 725 2562 3.924 0.808 0.170 0.048 17 1.7 rostralanteriorcingulate
- 7792 8554 20872 2.853 0.721 0.186 0.043 131 16.3 rostralmiddlefrontal
- 10762 10801 32149 3.348 0.738 0.164 0.037 142 18.8 superiorfrontal
- 6818 7074 15362 2.516 0.634 0.182 0.042 98 13.7 superiorparietal
- 4240 4341 9711 2.640 0.689 0.184 0.075 82 19.5 superiortemporal
- 3947 3859 8718 2.602 0.594 0.180 0.045 62 8.3 supramarginal
- 403 558 1412 3.364 0.602 0.227 0.041 6 0.9 frontalpole
- 605 887 2010 2.888 0.892 0.250 0.055 9 1.7 temporalpole
- 473 417 774 2.180 0.472 0.200 0.053 10 1.1 transversetemporal
- 3155 2471 7881 3.078 1.114 0.159 0.048 55 6.5 insula
- PIDs (19159 19162 19165 19168) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 2 lh Sun Oct 8 03:22:25 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- #-----------------------------------------
- #@# Cortical Parc 2 rh Sun Oct 8 03:22:25 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- Waiting for PID 19246 of (19246 19249) to complete...
- Waiting for PID 19249 of (19246 19249) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 2.9 using min determinant for regularization = 0.086
- 0 singular and 762 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 40 labels changed using aseg
- relabeling using gibbs priors...
- 000: 7561 changed, 116827 examined...
- 001: 1745 changed, 29545 examined...
- 002: 504 changed, 9307 examined...
- 003: 200 changed, 2876 examined...
- 004: 85 changed, 1113 examined...
- 005: 46 changed, 504 examined...
- 006: 24 changed, 280 examined...
- 007: 12 changed, 142 examined...
- 008: 6 changed, 69 examined...
- 009: 1 changed, 36 examined...
- 010: 1 changed, 6 examined...
- 011: 0 changed, 7 examined...
- 14 labels changed using aseg
- 000: 222 total segments, 137 labels (1141 vertices) changed
- 001: 92 total segments, 7 labels (33 vertices) changed
- 002: 85 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 25 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 924 vertices marked for relabeling...
- 924 labels changed in reclassification.
- writing output to ../label/lh.aparc.a2009s.annot...
- classification took 0 minutes and 17 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 719 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 6 labels changed using aseg
- relabeling using gibbs priors...
- 000: 7344 changed, 113646 examined...
- 001: 1653 changed, 28832 examined...
- 002: 466 changed, 8810 examined...
- 003: 193 changed, 2622 examined...
- 004: 100 changed, 1106 examined...
- 005: 53 changed, 578 examined...
- 006: 29 changed, 309 examined...
- 007: 14 changed, 149 examined...
- 008: 4 changed, 86 examined...
- 009: 2 changed, 22 examined...
- 010: 4 changed, 18 examined...
- 011: 1 changed, 17 examined...
- 012: 1 changed, 7 examined...
- 013: 0 changed, 5 examined...
- 1 labels changed using aseg
- 000: 235 total segments, 153 labels (1813 vertices) changed
- 001: 89 total segments, 7 labels (33 vertices) changed
- 002: 82 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 30 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1347 vertices marked for relabeling...
- 1347 labels changed in reclassification.
- writing output to ../label/rh.aparc.a2009s.annot...
- classification took 0 minutes and 17 seconds.
- PIDs (19246 19249) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 2 lh Sun Oct 8 03:22:42 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051180 lh white
- #-----------------------------------------
- #@# Parcellation Stats 2 rh Sun Oct 8 03:22:42 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051180 rh white
- Waiting for PID 19302 of (19302 19305) to complete...
- Waiting for PID 19305 of (19302 19305) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051180 lh white
- computing statistics for each annotation in ../label/lh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 1120 848 3291 3.054 0.720 0.138 0.028 16 1.3 G&S_frontomargin
- 994 748 2965 2.794 0.724 0.160 0.045 20 1.9 G&S_occipital_inf
- 1862 1379 4881 2.808 0.826 0.133 0.034 27 2.4 G&S_paracentral
- 1466 1033 4003 2.877 0.765 0.134 0.035 23 2.2 G&S_subcentral
- 771 599 2663 3.124 0.609 0.180 0.052 22 2.0 G&S_transv_frontopol
- 2077 1519 5294 3.163 0.552 0.124 0.029 24 2.6 G&S_cingul-Ant
- 1245 850 3280 3.447 0.600 0.101 0.018 9 0.9 G&S_cingul-Mid-Ant
- 1573 1126 4136 3.276 0.542 0.132 0.033 25 2.5 G&S_cingul-Mid-Post
- 543 376 2133 3.700 0.592 0.144 0.044 9 0.8 G_cingul-Post-dorsal
- 272 172 784 3.456 0.779 0.135 0.035 4 0.2 G_cingul-Post-ventral
- 1592 1196 3043 2.106 0.549 0.171 0.043 34 2.8 G_cuneus
- 1163 873 4015 3.196 0.569 0.132 0.033 20 1.6 G_front_inf-Opercular
- 434 302 1709 3.301 0.740 0.151 0.041 12 0.9 G_front_inf-Orbital
- 825 589 3088 3.322 0.631 0.143 0.040 17 1.3 G_front_inf-Triangul
- 4161 3019 14474 3.193 0.723 0.146 0.043 97 7.9 G_front_middle
- 7050 4943 25244 3.589 0.769 0.137 0.040 124 11.4 G_front_sup
- 449 342 1776 3.837 1.147 0.111 0.044 4 0.7 G_Ins_lg&S_cent_ins
- 733 452 2142 3.108 1.097 0.135 0.052 13 1.6 G_insular_short
- 1842 1339 6102 2.852 0.784 0.170 0.050 50 4.1 G_occipital_middle
- 1180 843 2944 2.524 0.717 0.143 0.030 16 1.6 G_occipital_sup
- 1282 958 4578 3.378 0.607 0.163 0.045 39 2.5 G_oc-temp_lat-fusifor
- 2636 1928 5420 2.233 0.795 0.159 0.050 46 5.3 G_oc-temp_med-Lingual
- 1525 1038 4528 3.043 0.963 0.123 0.038 22 2.6 G_oc-temp_med-Parahip
- 2118 1548 8502 3.504 0.756 0.147 0.039 42 3.2 G_orbital
- 2094 1594 7465 3.085 0.720 0.173 0.062 67 6.1 G_pariet_inf-Angular
- 2543 1877 8409 3.240 0.773 0.146 0.043 52 4.4 G_pariet_inf-Supramar
- 2833 2152 7591 2.514 0.665 0.149 0.039 62 5.0 G_parietal_sup
- 2078 1596 5421 2.447 0.770 0.158 0.046 50 4.3 G_postcentral
- 2611 1929 8615 3.102 0.642 0.142 0.036 44 3.9 G_precentral
- 2479 1781 8446 3.326 0.657 0.141 0.031 49 3.3 G_precuneus
- 768 577 2906 3.310 0.715 0.151 0.038 18 1.2 G_rectus
- 494 317 649 1.958 0.861 0.051 0.019 2 0.1 G_subcallosal
- 461 348 1161 2.414 0.448 0.171 0.042 12 0.8 G_temp_sup-G_T_transv
- 1571 1093 4689 2.790 0.704 0.159 0.052 41 3.9 G_temp_sup-Lateral
- 317 221 610 2.342 0.829 0.097 0.026 3 0.1 G_temp_sup-Plan_polar
- 929 687 2419 2.883 0.607 0.096 0.017 7 0.5 G_temp_sup-Plan_tempo
- 1690 1165 3974 2.423 0.788 0.157 0.058 46 4.5 G_temporal_inf
- 1416 1017 4138 2.648 0.741 0.169 0.084 73 5.9 G_temporal_middle
- 300 204 485 2.456 0.483 0.090 0.014 1 0.1 Lat_Fis-ant-Horizont
- 233 181 468 2.640 0.424 0.111 0.018 1 0.2 Lat_Fis-ant-Vertical
- 1148 792 1673 2.680 0.598 0.112 0.023 8 1.2 Lat_Fis-post
- 1543 1171 3735 2.304 0.668 0.162 0.046 33 3.0 Pole_occipital
- 1125 804 2752 2.512 0.597 0.140 0.052 17 2.6 Pole_temporal
- 1631 1186 2152 2.021 0.749 0.110 0.022 11 1.3 S_calcarine
- 3059 2113 4464 2.347 0.646 0.094 0.017 14 2.1 S_central
- 1343 927 2434 3.127 0.503 0.103 0.019 8 1.0 S_cingul-Marginalis
- 457 317 898 3.092 0.791 0.086 0.018 2 0.3 S_circular_insula_ant
- 1106 789 2265 2.995 1.022 0.087 0.015 5 0.7 S_circular_insula_inf
- 1497 1050 2519 3.039 0.614 0.089 0.014 5 1.0 S_circular_insula_sup
- 855 608 1320 2.486 0.483 0.083 0.013 3 0.5 S_collat_transv_ant
- 514 362 598 1.845 0.473 0.145 0.036 5 0.8 S_collat_transv_post
- 1965 1398 4067 2.761 0.496 0.109 0.022 16 1.6 S_front_inf
- 1622 1181 3304 2.851 0.567 0.119 0.022 13 1.6 S_front_middle
- 2897 2035 5689 2.929 0.459 0.089 0.016 14 1.8 S_front_sup
- 265 175 482 2.561 0.453 0.122 0.022 2 0.4 S_interm_prim-Jensen
- 3139 2190 5440 2.716 0.477 0.096 0.016 17 1.8 S_intrapariet&P_trans
- 805 565 1198 2.146 0.512 0.123 0.025 9 0.8 S_oc_middle&Lunatus
- 1352 906 2029 2.323 0.560 0.092 0.014 8 0.8 S_oc_sup&transversal
- 441 314 824 2.670 0.457 0.110 0.020 5 0.3 S_occipital_ant
- 634 442 1099 2.620 0.623 0.127 0.021 6 0.6 S_oc-temp_lat
- 2109 1578 4372 2.847 0.731 0.119 0.022 18 1.8 S_oc-temp_med&Lingual
- 291 222 876 2.899 0.995 0.172 0.046 5 0.6 S_orbital_lateral
- 481 345 1110 2.928 0.910 0.124 0.019 4 0.3 S_orbital_med-olfact
- 1257 926 3292 3.223 0.755 0.128 0.031 11 1.8 S_orbital-H_Shaped
- 1871 1332 3039 2.474 0.646 0.114 0.021 16 1.6 S_parieto_occipital
- 1274 771 1531 2.943 0.895 0.120 0.015 20 0.6 S_pericallosal
- 2566 1769 4801 2.906 0.630 0.105 0.020 17 2.1 S_postcentral
- 1468 1025 2914 2.863 0.517 0.094 0.017 7 0.9 S_precentral-inf-part
- 1650 1124 3052 2.970 0.671 0.100 0.018 9 1.3 S_precentral-sup-part
- 806 596 1647 2.925 0.635 0.137 0.026 12 0.8 S_suborbital
- 944 677 1843 3.185 0.438 0.098 0.013 4 0.6 S_subparietal
- 870 621 1492 2.302 0.664 0.118 0.025 5 0.8 S_temporal_inf
- 3894 2746 7786 2.946 0.591 0.102 0.019 24 2.9 S_temporal_sup
- 425 282 551 2.091 0.396 0.098 0.011 2 0.2 S_temporal_transverse
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0051180 rh white
- computing statistics for each annotation in ../label/rh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 801 584 2228 2.964 0.712 0.139 0.037 14 1.3 G&S_frontomargin
- 764 649 2402 2.555 0.653 0.168 0.035 11 1.2 G&S_occipital_inf
- 1468 1059 4425 2.812 0.953 0.135 0.033 21 2.1 G&S_paracentral
- 1431 1076 3469 2.692 0.856 0.150 0.040 29 2.7 G&S_subcentral
- 1023 768 2907 2.893 0.620 0.153 0.039 26 1.6 G&S_transv_frontopol
- 3162 2258 7683 3.158 0.662 0.124 0.028 36 3.8 G&S_cingul-Ant
- 1351 933 3610 3.337 0.946 0.115 0.024 14 1.1 G&S_cingul-Mid-Ant
- 1742 1243 4442 3.232 0.629 0.117 0.027 20 1.8 G&S_cingul-Mid-Post
- 428 301 1930 3.922 0.716 0.182 0.062 12 1.0 G_cingul-Post-dorsal
- 331 209 1333 3.743 0.658 0.150 0.035 6 0.3 G_cingul-Post-ventral
- 1611 1248 3594 2.269 0.692 0.161 0.039 31 2.5 G_cuneus
- 1391 991 3866 2.795 0.638 0.159 0.049 32 3.1 G_front_inf-Opercular
- 405 273 1189 2.845 0.563 0.162 0.050 10 0.9 G_front_inf-Orbital
- 759 558 2463 2.937 0.740 0.133 0.041 15 1.2 G_front_inf-Triangul
- 3812 2875 13178 2.997 0.758 0.164 0.054 105 9.0 G_front_middle
- 6569 4667 24037 3.577 0.736 0.135 0.034 102 9.4 G_front_sup
- 449 397 2051 4.061 0.938 0.147 0.052 6 1.1 G_Ins_lg&S_cent_ins
- 434 329 1688 3.586 0.985 0.096 0.024 2 0.4 G_insular_short
- 1640 1257 5771 3.005 0.739 0.166 0.046 44 3.4 G_occipital_middle
- 1275 890 2902 2.527 0.654 0.157 0.032 25 1.7 G_occipital_sup
- 1669 1170 4987 3.065 0.592 0.162 0.039 40 2.6 G_oc-temp_lat-fusifor
- 2370 1762 5674 2.560 0.883 0.177 0.057 51 6.4 G_oc-temp_med-Lingual
- 1254 897 4528 3.415 0.786 0.136 0.036 19 1.5 G_oc-temp_med-Parahip
- 2125 1594 6872 3.122 0.773 0.155 0.044 55 3.8 G_orbital
- 2087 1552 7547 2.985 0.780 0.161 0.052 57 5.2 G_pariet_inf-Angular
- 1867 1446 5031 2.542 0.613 0.162 0.050 56 3.9 G_pariet_inf-Supramar
- 1994 1611 5626 2.482 0.676 0.170 0.049 53 4.4 G_parietal_sup
- 1564 1297 3855 2.140 0.600 0.170 0.049 40 3.9 G_postcentral
- 2314 1814 6525 2.718 0.621 0.138 0.039 43 3.9 G_precentral
- 2253 1745 7686 3.057 0.730 0.173 0.053 55 5.5 G_precuneus
- 751 570 2861 3.258 0.888 0.191 0.060 27 2.2 G_rectus
- 456 256 767 2.455 1.344 0.074 0.035 4 0.7 G_subcallosal
- 431 311 833 2.322 0.565 0.181 0.044 13 0.8 G_temp_sup-G_T_transv
- 1410 1072 4261 2.741 0.768 0.173 0.059 44 4.2 G_temp_sup-Lateral
- 961 674 1730 2.227 0.943 0.133 0.049 20 2.1 G_temp_sup-Plan_polar
- 589 465 1485 2.616 0.646 0.095 0.014 3 0.3 G_temp_sup-Plan_tempo
- 1489 1079 3957 2.640 0.777 0.172 0.067 51 4.6 G_temporal_inf
- 2019 1407 4861 2.513 0.779 0.165 0.071 81 6.2 G_temporal_middle
- 310 207 373 2.079 0.561 0.082 0.012 1 0.1 Lat_Fis-ant-Horizont
- 146 114 449 3.156 0.753 0.116 0.027 1 0.1 Lat_Fis-ant-Vertical
- 1263 852 1956 2.713 0.682 0.101 0.018 7 1.0 Lat_Fis-post
- 2237 1710 5140 2.270 0.588 0.165 0.047 47 4.0 Pole_occipital
- 1267 1032 4384 2.854 0.768 0.188 0.076 40 4.7 Pole_temporal
- 1605 1176 2321 2.006 0.724 0.115 0.025 13 1.8 S_calcarine
- 2399 1640 3100 2.110 0.604 0.089 0.014 10 1.4 S_central
- 1485 1057 2508 2.634 0.529 0.103 0.017 9 1.0 S_cingul-Marginalis
- 530 377 1009 2.858 0.686 0.098 0.016 2 0.4 S_circular_insula_ant
- 976 672 1582 2.593 0.964 0.073 0.011 3 0.4 S_circular_insula_inf
- 1213 852 2129 2.916 0.571 0.086 0.015 4 0.8 S_circular_insula_sup
- 732 542 1322 2.552 0.566 0.088 0.011 2 0.4 S_collat_transv_ant
- 336 239 421 2.016 0.488 0.093 0.013 1 0.2 S_collat_transv_post
- 2051 1460 3877 2.427 0.595 0.117 0.029 25 2.3 S_front_inf
- 2411 1655 4794 2.805 0.596 0.099 0.019 18 1.9 S_front_middle
- 2663 1900 5483 2.933 0.506 0.084 0.013 12 1.4 S_front_sup
- 358 276 799 2.862 0.514 0.135 0.023 4 0.3 S_interm_prim-Jensen
- 2947 2019 5016 2.561 0.622 0.105 0.024 25 2.8 S_intrapariet&P_trans
- 587 411 847 1.959 0.539 0.112 0.020 4 0.5 S_oc_middle&Lunatus
- 1255 865 1881 2.308 0.504 0.112 0.024 9 1.3 S_oc_sup&transversal
- 445 302 763 2.215 0.594 0.075 0.017 3 0.4 S_occipital_ant
- 671 476 1125 2.549 0.569 0.107 0.017 4 0.5 S_oc-temp_lat
- 1822 1281 2980 2.493 0.542 0.091 0.012 8 0.9 S_oc-temp_med&Lingual
- 345 235 459 2.035 0.365 0.129 0.033 6 0.5 S_orbital_lateral
- 468 365 990 2.549 0.671 0.115 0.018 3 0.3 S_orbital_med-olfact
- 1234 918 3263 2.980 0.836 0.132 0.025 16 1.4 S_orbital-H_Shaped
- 1962 1327 3055 2.499 0.576 0.095 0.016 13 1.2 S_parieto_occipital
- 1716 1106 1995 2.277 1.119 0.120 0.022 24 1.5 S_pericallosal
- 1886 1295 3228 2.426 0.578 0.106 0.023 16 1.6 S_postcentral
- 1792 1293 3677 2.720 0.669 0.117 0.025 18 2.1 S_precentral-inf-part
- 1121 785 1960 2.568 0.704 0.095 0.017 7 0.9 S_precentral-sup-part
- 343 254 804 3.062 0.542 0.094 0.016 2 0.2 S_suborbital
- 1031 732 2041 3.130 0.506 0.113 0.019 6 0.9 S_subparietal
- 619 450 956 2.182 0.649 0.122 0.022 4 0.7 S_temporal_inf
- 5051 3546 10194 2.778 0.619 0.102 0.018 39 4.0 S_temporal_sup
- 200 131 307 2.419 0.579 0.070 0.007 1 0.1 S_temporal_transverse
- PIDs (19302 19305) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 3 lh Sun Oct 8 03:23:18 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- #-----------------------------------------
- #@# Cortical Parc 3 rh Sun Oct 8 03:23:18 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- Waiting for PID 19364 of (19364 19367) to complete...
- Waiting for PID 19367 of (19364 19367) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 383 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1273 labels changed using aseg
- relabeling using gibbs priors...
- 000: 1693 changed, 116827 examined...
- 001: 330 changed, 7992 examined...
- 002: 89 changed, 1984 examined...
- 003: 40 changed, 529 examined...
- 004: 23 changed, 236 examined...
- 005: 21 changed, 124 examined...
- 006: 14 changed, 106 examined...
- 007: 10 changed, 74 examined...
- 008: 9 changed, 58 examined...
- 009: 7 changed, 46 examined...
- 010: 9 changed, 40 examined...
- 011: 5 changed, 41 examined...
- 012: 5 changed, 30 examined...
- 013: 6 changed, 29 examined...
- 014: 3 changed, 26 examined...
- 015: 3 changed, 21 examined...
- 016: 4 changed, 18 examined...
- 017: 4 changed, 24 examined...
- 018: 0 changed, 18 examined...
- 247 labels changed using aseg
- 000: 54 total segments, 21 labels (233 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 8 filter iterations complete (10 requested, 0 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 653 vertices marked for relabeling...
- 653 labels changed in reclassification.
- writing output to ../label/lh.aparc.DKTatlas.annot...
- classification took 0 minutes and 14 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0051180 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.9 using min determinant for regularization = 0.009
- 0 singular and 325 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1147 labels changed using aseg
- relabeling using gibbs priors...
- 000: 1755 changed, 113646 examined...
- 001: 379 changed, 8287 examined...
- 002: 120 changed, 2241 examined...
- 003: 48 changed, 679 examined...
- 004: 24 changed, 276 examined...
- 005: 15 changed, 139 examined...
- 006: 16 changed, 93 examined...
- 007: 9 changed, 78 examined...
- 008: 14 changed, 62 examined...
- 009: 3 changed, 66 examined...
- 010: 2 changed, 20 examined...
- 011: 4 changed, 12 examined...
- 012: 5 changed, 19 examined...
- 013: 6 changed, 29 examined...
- 014: 2 changed, 29 examined...
- 015: 5 changed, 12 examined...
- 016: 3 changed, 19 examined...
- 017: 0 changed, 15 examined...
- 186 labels changed using aseg
- 000: 51 total segments, 18 labels (257 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 4 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1151 vertices marked for relabeling...
- 1151 labels changed in reclassification.
- writing output to ../label/rh.aparc.DKTatlas.annot...
- classification took 0 minutes and 14 seconds.
- PIDs (19364 19367) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 3 lh Sun Oct 8 03:23:32 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051180 lh white
- #-----------------------------------------
- #@# Parcellation Stats 3 rh Sun Oct 8 03:23:32 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051180 rh white
- Waiting for PID 19426 of (19426 19429) to complete...
- Waiting for PID 19429 of (19426 19429) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051180 lh white
- computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 1369 922 3486 3.500 0.605 0.115 0.019 15 1.0 caudalanteriorcingulate
- 3479 2469 8835 3.089 0.667 0.121 0.028 38 4.1 caudalmiddlefrontal
- 2407 1750 4298 2.172 0.541 0.146 0.033 36 3.3 cuneus
- 564 434 2063 3.090 0.961 0.143 0.040 8 1.0 entorhinal
- 3192 2379 8304 2.925 0.730 0.136 0.031 54 4.2 fusiform
- 5427 3949 14911 2.937 0.695 0.138 0.037 94 8.3 inferiorparietal
- 3375 2334 7036 2.417 0.696 0.135 0.042 62 6.3 inferiortemporal
- 1259 820 2958 3.163 0.863 0.120 0.026 14 1.2 isthmuscingulate
- 5567 4062 13093 2.447 0.682 0.151 0.040 108 9.5 lateraloccipital
- 3347 2443 11352 3.487 0.781 0.136 0.032 48 4.3 lateralorbitofrontal
- 4055 2945 7863 2.318 0.785 0.146 0.041 61 6.6 lingual
- 2095 1511 5697 2.940 0.868 0.128 0.031 38 2.4 medialorbitofrontal
- 3474 2460 8163 2.718 0.684 0.136 0.049 90 8.0 middletemporal
- 1178 776 3009 3.185 0.956 0.106 0.031 13 1.5 parahippocampal
- 2583 1810 6889 3.254 0.743 0.115 0.032 34 3.5 paracentral
- 1848 1361 5228 3.134 0.503 0.110 0.023 21 1.6 parsopercularis
- 974 664 3033 3.038 0.805 0.112 0.025 13 1.0 parsorbitalis
- 1937 1392 5192 2.939 0.717 0.126 0.029 25 2.4 parstriangularis
- 1293 982 1540 1.741 0.472 0.120 0.024 11 1.2 pericalcarine
- 6337 4661 13790 2.470 0.812 0.130 0.032 92 9.1 postcentral
- 2061 1471 5407 3.286 0.573 0.140 0.032 37 3.1 posteriorcingulate
- 7171 5080 17625 2.936 0.603 0.116 0.025 75 7.6 precentral
- 5085 3645 13043 3.097 0.698 0.121 0.023 63 4.8 precuneus
- 1694 1213 4206 3.007 0.775 0.134 0.034 25 2.2 rostralanteriorcingulate
- 5818 4257 17610 3.021 0.665 0.143 0.038 110 9.6 rostralmiddlefrontal
- 11543 8173 33743 3.283 0.756 0.122 0.031 149 14.6 superiorfrontal
- 6076 4394 13596 2.598 0.592 0.124 0.028 85 7.4 superiorparietal
- 6007 4179 13355 2.679 0.687 0.115 0.031 72 8.1 superiortemporal
- 4661 3327 12340 3.106 0.709 0.128 0.036 72 7.3 supramarginal
- 735 523 1381 2.397 0.491 0.157 0.036 14 1.1 transversetemporal
- 2423 1718 6644 3.366 0.981 0.106 0.030 20 3.1 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0051180 rh white
- computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 1269 844 2955 2.624 1.150 0.128 0.023 19 1.0 caudalanteriorcingulate
- 3673 2696 9094 2.811 0.632 0.130 0.035 60 5.9 caudalmiddlefrontal
- 2339 1753 4837 2.287 0.609 0.145 0.032 40 3.0 cuneus
- 427 345 2208 3.836 0.535 0.143 0.026 6 0.4 entorhinal
- 3401 2454 8363 2.828 0.647 0.132 0.027 53 3.8 fusiform
- 6106 4408 16583 2.792 0.744 0.132 0.036 104 9.7 inferiorparietal
- 3001 2192 7069 2.572 0.720 0.146 0.047 64 6.3 inferiortemporal
- 1279 883 3479 3.212 1.088 0.136 0.034 19 1.7 isthmuscingulate
- 5054 3804 11841 2.338 0.661 0.158 0.042 99 9.3 lateraloccipital
- 3649 2706 10246 3.027 0.823 0.144 0.036 65 5.8 lateralorbitofrontal
- 3565 2622 7663 2.438 0.822 0.156 0.047 60 7.5 lingual
- 1928 1397 5391 2.966 0.952 0.133 0.035 35 3.0 medialorbitofrontal
- 4168 2921 8868 2.601 0.735 0.135 0.048 106 8.9 middletemporal
- 991 663 2310 2.855 0.834 0.102 0.024 8 0.7 parahippocampal
- 2500 1739 6569 3.103 0.763 0.106 0.020 20 2.0 paracentral
- 2231 1599 5736 2.856 0.631 0.137 0.043 38 4.1 parsopercularis
- 953 686 2272 2.553 0.656 0.142 0.040 17 1.7 parsorbitalis
- 1665 1196 3815 2.465 0.668 0.119 0.030 27 1.9 parstriangularis
- 1394 1058 1899 1.853 0.493 0.124 0.026 12 1.8 pericalcarine
- 5439 4083 10463 2.191 0.718 0.142 0.035 97 9.0 postcentral
- 2164 1546 5421 2.934 0.911 0.138 0.032 35 2.6 posteriorcingulate
- 6132 4456 13434 2.599 0.653 0.111 0.025 67 6.7 precentral
- 4920 3519 12135 2.899 0.678 0.125 0.028 61 6.1 precuneus
- 1233 811 3305 3.486 1.128 0.130 0.038 18 2.2 rostralanteriorcingulate
- 5368 3817 14511 2.839 0.744 0.135 0.039 101 8.4 rostralmiddlefrontal
- 13377 9616 38441 3.245 0.740 0.122 0.029 173 16.1 superiorfrontal
- 5506 4096 12862 2.568 0.641 0.143 0.037 102 8.9 superiorparietal
- 5641 4103 13798 2.707 0.726 0.128 0.037 89 9.7 superiortemporal
- 3757 2758 8366 2.622 0.595 0.126 0.031 57 4.8 supramarginal
- 488 347 803 2.172 0.481 0.174 0.042 13 0.8 transversetemporal
- 2308 1724 6705 3.506 0.822 0.094 0.022 10 2.0 insula
- PIDs (19426 19429) completed and logs appended.
- #-----------------------------------------
- #@# WM/GM Contrast lh Sun Oct 8 03:24:07 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- pctsurfcon --s 0051180 --lh-only
- #-----------------------------------------
- #@# WM/GM Contrast rh Sun Oct 8 03:24:07 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- pctsurfcon --s 0051180 --rh-only
- Waiting for PID 19477 of (19477 19489) to complete...
- Waiting for PID 19489 of (19477 19489) to complete...
- pctsurfcon --s 0051180 --lh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts/pctsurfcon.log
- Sun Oct 8 03:24:07 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-970 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19477/lh.wm.mgh --regheader 0051180 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 -0.00002;
- 0.00000 -1.00000 0.00000 0.00003;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 63281
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19477/lh.wm.mgh
- Dim: 116827 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19477/lh.gm.mgh --projfrac 0.3 --regheader 0051180 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 -0.00002;
- 0.00000 -1.00000 0.00000 0.00003;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 75423
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19477/lh.gm.mgh
- Dim: 116827 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19477/lh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19477/lh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.w-g.pct.mgh --annot 0051180 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/stats/lh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.w-g.pct.mgh --annot 0051180 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/stats/lh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 1000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.w-g.pct.mgh
- Vertex Area is 0.712891 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- pctsurfcon --s 0051180 --rh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts/pctsurfcon.log
- Sun Oct 8 03:24:07 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-970 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19489/rh.wm.mgh --regheader 0051180 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 -0.00002;
- 0.00000 -1.00000 0.00000 0.00003;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 61837
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19489/rh.wm.mgh
- Dim: 113646 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19489/rh.gm.mgh --projfrac 0.3 --regheader 0051180 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 -0.00002;
- 0.00000 -1.00000 0.00000 0.00003;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 73735
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19489/rh.gm.mgh
- Dim: 113646 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19489/rh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/tmp.pctsurfcon.19489/rh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.w-g.pct.mgh --annot 0051180 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/stats/rh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.w-g.pct.mgh --annot 0051180 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/stats/rh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 2000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.w-g.pct.mgh
- Vertex Area is 0.719949 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- PIDs (19477 19489) completed and logs appended.
- #-----------------------------------------
- #@# Relabel Hypointensities Sun Oct 8 03:24:12 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz
- reading input surface ../surf/lh.white...
- relabeling lh hypointensities...
- 3447 voxels changed to hypointensity...
- reading input surface ../surf/rh.white...
- relabeling rh hypointensities...
- 6137 voxels changed to hypointensity...
- 10241 hypointense voxels neighboring cortex changed
- #-----------------------------------------
- #@# AParc-to-ASeg aparc Sun Oct 8 03:24:34 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_aparc2aseg --s 0051180 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- #-----------------------------------------
- #@# AParc-to-ASeg a2009s Sun Oct 8 03:24:34 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_aparc2aseg --s 0051180 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- #-----------------------------------------
- #@# AParc-to-ASeg DKTatlas Sun Oct 8 03:24:34 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_aparc2aseg --s 0051180 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- Waiting for PID 19654 of (19654 19657 19660) to complete...
- Waiting for PID 19657 of (19654 19657 19660) to complete...
- Waiting for PID 19660 of (19654 19657 19660) to complete...
- mri_aparc2aseg --s 0051180 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051180
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aparc+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 6.06
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 114
- rescaling Left_Cerebral_Cortex from 61 --> 45
- rescaling Left_Lateral_Ventricle from 13 --> 20
- rescaling Left_Inf_Lat_Vent from 34 --> 29
- rescaling Left_Cerebellum_White_Matter from 86 --> 83
- rescaling Left_Cerebellum_Cortex from 60 --> 42
- rescaling Left_Thalamus from 94 --> 89
- rescaling Left_Thalamus_Proper from 84 --> 89
- rescaling Left_Caudate from 75 --> 67
- rescaling Left_Putamen from 80 --> 78
- rescaling Left_Pallidum from 98 --> 94
- rescaling Third_Ventricle from 25 --> 33
- rescaling Fourth_Ventricle from 22 --> 20
- rescaling Brain_Stem from 81 --> 87
- rescaling Left_Hippocampus from 57 --> 64
- rescaling Left_Amygdala from 56 --> 52
- rescaling CSF from 32 --> 46
- rescaling Left_Accumbens_area from 62 --> 60
- rescaling Left_VentralDC from 87 --> 96
- rescaling Right_Cerebral_White_Matter from 105 --> 101
- rescaling Right_Cerebral_Cortex from 58 --> 45
- rescaling Right_Lateral_Ventricle from 13 --> 19
- rescaling Right_Inf_Lat_Vent from 25 --> 21
- rescaling Right_Cerebellum_White_Matter from 87 --> 79
- rescaling Right_Cerebellum_Cortex from 59 --> 41
- rescaling Right_Thalamus_Proper from 85 --> 83
- rescaling Right_Caudate from 62 --> 68
- rescaling Right_Putamen from 80 --> 67
- rescaling Right_Pallidum from 97 --> 85
- rescaling Right_Hippocampus from 53 --> 51
- rescaling Right_Amygdala from 55 --> 52
- rescaling Right_Accumbens_area from 65 --> 66
- rescaling Right_VentralDC from 86 --> 100
- rescaling Fifth_Ventricle from 40 --> 40
- rescaling WM_hypointensities from 78 --> 79
- rescaling non_WM_hypointensities from 40 --> 45
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 530885
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 308 changed.
- pass 2: 31 changed.
- pass 3: 6 changed.
- pass 4: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aparc+aseg.mgz
- mri_aparc2aseg --s 0051180 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051180
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aparc.a2009s+aseg.mgz
- useribbon 0
- baseoffset 10100
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 6.06
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 114
- rescaling Left_Cerebral_Cortex from 61 --> 45
- rescaling Left_Lateral_Ventricle from 13 --> 20
- rescaling Left_Inf_Lat_Vent from 34 --> 29
- rescaling Left_Cerebellum_White_Matter from 86 --> 83
- rescaling Left_Cerebellum_Cortex from 60 --> 42
- rescaling Left_Thalamus from 94 --> 89
- rescaling Left_Thalamus_Proper from 84 --> 89
- rescaling Left_Caudate from 75 --> 67
- rescaling Left_Putamen from 80 --> 78
- rescaling Left_Pallidum from 98 --> 94
- rescaling Third_Ventricle from 25 --> 33
- rescaling Fourth_Ventricle from 22 --> 20
- rescaling Brain_Stem from 81 --> 87
- rescaling Left_Hippocampus from 57 --> 64
- rescaling Left_Amygdala from 56 --> 52
- rescaling CSF from 32 --> 46
- rescaling Left_Accumbens_area from 62 --> 60
- rescaling Left_VentralDC from 87 --> 96
- rescaling Right_Cerebral_White_Matter from 105 --> 101
- rescaling Right_Cerebral_Cortex from 58 --> 45
- rescaling Right_Lateral_Ventricle from 13 --> 19
- rescaling Right_Inf_Lat_Vent from 25 --> 21
- rescaling Right_Cerebellum_White_Matter from 87 --> 79
- rescaling Right_Cerebellum_Cortex from 59 --> 41
- rescaling Right_Thalamus_Proper from 85 --> 83
- rescaling Right_Caudate from 62 --> 68
- rescaling Right_Putamen from 80 --> 67
- rescaling Right_Pallidum from 97 --> 85
- rescaling Right_Hippocampus from 53 --> 51
- rescaling Right_Amygdala from 55 --> 52
- rescaling Right_Accumbens_area from 65 --> 66
- rescaling Right_VentralDC from 86 --> 100
- rescaling Fifth_Ventricle from 40 --> 40
- rescaling WM_hypointensities from 78 --> 79
- rescaling non_WM_hypointensities from 40 --> 45
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 530938
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 308 changed.
- pass 2: 31 changed.
- pass 3: 6 changed.
- pass 4: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aparc.a2009s+aseg.mgz
- mri_aparc2aseg --s 0051180 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051180
- outvol mri/aparc.DKTatlas+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 6.06
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 114
- rescaling Left_Cerebral_Cortex from 61 --> 45
- rescaling Left_Lateral_Ventricle from 13 --> 20
- rescaling Left_Inf_Lat_Vent from 34 --> 29
- rescaling Left_Cerebellum_White_Matter from 86 --> 83
- rescaling Left_Cerebellum_Cortex from 60 --> 42
- rescaling Left_Thalamus from 94 --> 89
- rescaling Left_Thalamus_Proper from 84 --> 89
- rescaling Left_Caudate from 75 --> 67
- rescaling Left_Putamen from 80 --> 78
- rescaling Left_Pallidum from 98 --> 94
- rescaling Third_Ventricle from 25 --> 33
- rescaling Fourth_Ventricle from 22 --> 20
- rescaling Brain_Stem from 81 --> 87
- rescaling Left_Hippocampus from 57 --> 64
- rescaling Left_Amygdala from 56 --> 52
- rescaling CSF from 32 --> 46
- rescaling Left_Accumbens_area from 62 --> 60
- rescaling Left_VentralDC from 87 --> 96
- rescaling Right_Cerebral_White_Matter from 105 --> 101
- rescaling Right_Cerebral_Cortex from 58 --> 45
- rescaling Right_Lateral_Ventricle from 13 --> 19
- rescaling Right_Inf_Lat_Vent from 25 --> 21
- rescaling Right_Cerebellum_White_Matter from 87 --> 79
- rescaling Right_Cerebellum_Cortex from 59 --> 41
- rescaling Right_Thalamus_Proper from 85 --> 83
- rescaling Right_Caudate from 62 --> 68
- rescaling Right_Putamen from 80 --> 67
- rescaling Right_Pallidum from 97 --> 85
- rescaling Right_Hippocampus from 53 --> 51
- rescaling Right_Amygdala from 55 --> 52
- rescaling Right_Accumbens_area from 65 --> 66
- rescaling Right_VentralDC from 86 --> 100
- rescaling Fifth_Ventricle from 40 --> 40
- rescaling WM_hypointensities from 78 --> 79
- rescaling non_WM_hypointensities from 40 --> 45
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 530938
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 308 changed.
- pass 2: 31 changed.
- pass 3: 6 changed.
- pass 4: 0 changed.
- nchanged = 0
- Writing output aseg to mri/aparc.DKTatlas+aseg.mgz
- PIDs (19654 19657 19660) completed and logs appended.
- #-----------------------------------------
- #@# APas-to-ASeg Sun Oct 8 03:31:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- Sun Oct 8 03:31:51 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- $Id: apas2aseg,v 1.2 2016/02/12 21:43:14 zkaufman Exp $
- Linux tars-970 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- mri_binarize --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri
- cmdline mri_binarize.bin --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- input aparc+aseg.mgz
- frame 0
- nErode3d 0
- nErode2d 0
- output aseg.mgz
- Binarizing based on threshold
- min -infinity
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Replacing 72
- 1: 1000 3
- 2: 2000 42
- 3: 1001 3
- 4: 2001 42
- 5: 1002 3
- 6: 2002 42
- 7: 1003 3
- 8: 2003 42
- 9: 1004 3
- 10: 2004 42
- 11: 1005 3
- 12: 2005 42
- 13: 1006 3
- 14: 2006 42
- 15: 1007 3
- 16: 2007 42
- 17: 1008 3
- 18: 2008 42
- 19: 1009 3
- 20: 2009 42
- 21: 1010 3
- 22: 2010 42
- 23: 1011 3
- 24: 2011 42
- 25: 1012 3
- 26: 2012 42
- 27: 1013 3
- 28: 2013 42
- 29: 1014 3
- 30: 2014 42
- 31: 1015 3
- 32: 2015 42
- 33: 1016 3
- 34: 2016 42
- 35: 1017 3
- 36: 2017 42
- 37: 1018 3
- 38: 2018 42
- 39: 1019 3
- 40: 2019 42
- 41: 1020 3
- 42: 2020 42
- 43: 1021 3
- 44: 2021 42
- 45: 1022 3
- 46: 2022 42
- 47: 1023 3
- 48: 2023 42
- 49: 1024 3
- 50: 2024 42
- 51: 1025 3
- 52: 2025 42
- 53: 1026 3
- 54: 2026 42
- 55: 1027 3
- 56: 2027 42
- 57: 1028 3
- 58: 2028 42
- 59: 1029 3
- 60: 2029 42
- 61: 1030 3
- 62: 2030 42
- 63: 1031 3
- 64: 2031 42
- 65: 1032 3
- 66: 2032 42
- 67: 1033 3
- 68: 2033 42
- 69: 1034 3
- 70: 2034 42
- 71: 1035 3
- 72: 2035 42
- Found 0 values in range
- Counting number of voxels in first frame
- Found 0 voxels in final mask
- Count: 0 0.000000 16777216 0.000000
- mri_binarize done
-
- Started at Sun Oct 8 03:31:51 CEST 2017
- Ended at Sun Oct 8 03:31:57 CEST 2017
- Apas2aseg-Run-Time-Sec 6
-
- apas2aseg Done
- #--------------------------------------------
- #@# ASeg Stats Sun Oct 8 03:31:57 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051180
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051180
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- Computing euler number
- orig.nofix lheno = -154, rheno = -174
- orig.nofix lhholes = 78, rhholes = 88
- Loading mri/aseg.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 50 segmentations
- Computing statistics for each segmentation
- Reporting on 45 segmentations
- Using PrintSegStat
- mri_segstats done
- #-----------------------------------------
- #@# WMParc Sun Oct 8 03:33:49 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180
- mri_aparc2aseg --s 0051180 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0051180
- outvol mri/wmparc.mgz
- useribbon 0
- baseoffset 0
- labeling wm
- labeling hypo-intensities as wm
- dmaxctx 5.000000
- RipUnknown 1
- CtxSeg /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aparc+aseg.mgz
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/ribbon.mgz
- Loading filled from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/ribbon.mgz
- Ripping vertices labeled as unkown
- Ripped 7798 vertices from left hemi
- Ripped 7749 vertices from right hemi
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aseg.mgz
- Loading Ctx Seg File /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/aparc+aseg.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 893089
- Used brute-force search on 61 voxels
- Fixing Parahip LH WM
- Found 13 clusters
- 0 k 3.000000
- 1 k 2.000000
- 2 k 2.000000
- 3 k 1.000000
- 4 k 1.000000
- 5 k 1076.000000
- 6 k 14.000000
- 7 k 1.000000
- 8 k 1.000000
- 9 k 4.000000
- 10 k 1.000000
- 11 k 1.000000
- 12 k 2.000000
- Fixing Parahip RH WM
- Found 6 clusters
- 0 k 1362.000000
- 1 k 1.000000
- 2 k 1.000000
- 3 k 1.000000
- 4 k 1.000000
- 5 k 1.000000
- Writing output aseg to mri/wmparc.mgz
- mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051180 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051180 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- Loading mri/wmparc.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 390 segmentations
- Computing statistics for each segmentation
- Reporting on 70 segmentations
- Using PrintSegStat
- mri_segstats done
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label
- #--------------------------------------------
- #@# BA_exvivo Labels lh Sun Oct 8 03:42:07 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 20849 of (20849 20855 20861 20867 20873) to complete...
- Waiting for PID 20855 of (20849 20855 20861 20867 20873) to complete...
- Waiting for PID 20861 of (20849 20855 20861 20867 20873) to complete...
- Waiting for PID 20867 of (20849 20855 20861 20867 20873) to complete...
- Waiting for PID 20873 of (20849 20855 20861 20867 20873) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4129 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4129 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 355
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.label 4484
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7909 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7909 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 398
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.label 8307
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA3a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4077 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4077 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 111
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.label 4188
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA3b_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5983 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5983 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 307
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.label 6290
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA4a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5784 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5784 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 268
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.label 6052
- mri_label2label: Done
- PIDs (20849 20855 20861 20867 20873) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 20925 of (20925 20931 20937 20943) to complete...
- Waiting for PID 20931 of (20925 20931 20937 20943) to complete...
- Waiting for PID 20937 of (20925 20931 20937 20943) to complete...
- Waiting for PID 20943 of (20925 20931 20937 20943) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA4p_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4070 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4070 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 142
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.label 4212
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA6_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 13589 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 13589 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 1112
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.label 14701
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA44_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4181 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4181 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 199
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.label 4380
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0051180 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA45_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3422 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3422 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 382
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.label 3804
- mri_label2label: Done
- PIDs (20925 20931 20937 20943) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0051180 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0051180 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0051180 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0051180 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0051180 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 20989 of (20989 20995 21001 21007 21012) to complete...
- Waiting for PID 20995 of (20989 20995 21001 21007 21012) to complete...
- Waiting for PID 21001 of (20989 20995 21001 21007 21012) to complete...
- Waiting for PID 21007 of (20989 20995 21001 21007 21012) to complete...
- Waiting for PID 21012 of (20989 20995 21001 21007 21012) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0051180 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.V1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4641 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4641 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 546
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.label 5187
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0051180 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.V2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8114 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8114 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 1470
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.label 9584
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0051180 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.MT_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2018 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2018 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 90
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.label 2108
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0051180 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1290 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1290 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 117
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.label 1407
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0051180 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1199 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1199 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 115
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.label 1314
- mri_label2label: Done
- PIDs (20989 20995 21001 21007 21012) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 21061 of (21061 21067 21073 21078 21084) to complete...
- Waiting for PID 21067 of (21061 21067 21073 21078 21084) to complete...
- Waiting for PID 21073 of (21061 21067 21073 21078 21084) to complete...
- Waiting for PID 21078 of (21061 21067 21073 21078 21084) to complete...
- Waiting for PID 21084 of (21061 21067 21073 21078 21084) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1014 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1014 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 125
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.thresh.label 1139
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2092 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2092 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 118
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.thresh.label 2210
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1504 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1504 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 32
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.thresh.label 1536
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1996 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1996 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 80
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.thresh.label 2076
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2319 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2319 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 101
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.thresh.label 2420
- mri_label2label: Done
- PIDs (21061 21067 21073 21078 21084) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 21137 of (21137 21143 21149 21154) to complete...
- Waiting for PID 21143 of (21137 21143 21149 21154) to complete...
- Waiting for PID 21149 of (21137 21143 21149 21154) to complete...
- Waiting for PID 21154 of (21137 21143 21149 21154) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1549 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1549 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 62
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.thresh.label 1611
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7035 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7035 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 551
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.thresh.label 7586
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1912 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 92
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.thresh.label 2004
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1151 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1151 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 152
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.thresh.label 1303
- mri_label2label: Done
- PIDs (21137 21143 21149 21154) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 21222 of (21222 21228 21234 21240 21245) to complete...
- Waiting for PID 21228 of (21222 21228 21234 21240 21245) to complete...
- Waiting for PID 21234 of (21222 21228 21234 21240 21245) to complete...
- Waiting for PID 21240 of (21222 21228 21234 21240 21245) to complete...
- Waiting for PID 21245 of (21222 21228 21234 21240 21245) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3405 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3405 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 317
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.thresh.label 3722
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3334 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3334 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 712
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.thresh.label 4046
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 513 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 513 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 31
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.thresh.label 544
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 470 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 470 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 41
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.thresh.label 511
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./lh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 450 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 450 nlabel points
- Performing mapping from target back to the source label 116827
- Number of reverse mapping hits = 48
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.thresh.label 498
- mri_label2label: Done
- PIDs (21222 21228 21234 21240 21245) completed and logs appended.
- mris_label2annot --s 0051180 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label
- cmdline mris_label2annot --s 0051180 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- subject 0051180
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 81239 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.BA_exvivo.annot
- mris_label2annot --s 0051180 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label
- cmdline mris_label2annot --s 0051180 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- subject 0051180
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 95648 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/lh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab 0051180 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 1066 822 2496 2.268 0.619 0.186 0.058 32 2.6 BA1_exvivo
- 3409 2462 7790 2.858 0.666 0.112 0.023 33 3.6 BA2_exvivo
- 990 683 1213 2.234 0.438 0.119 0.022 6 0.9 BA3a_exvivo
- 2100 1535 4175 2.103 0.729 0.122 0.031 29 3.0 BA3b_exvivo
- 1561 1102 4861 3.367 0.739 0.113 0.035 25 2.3 BA4a_exvivo
- 1267 868 2597 2.905 0.471 0.092 0.017 6 0.9 BA4p_exvivo
- 9420 6719 27677 3.204 0.727 0.123 0.030 109 11.6 BA6_exvivo
- 1890 1404 5288 2.997 0.526 0.116 0.027 22 2.1 BA44_exvivo
- 2464 1800 7390 2.987 0.693 0.133 0.033 41 3.2 BA45_exvivo
- 2391 1849 3909 1.849 0.572 0.144 0.036 39 3.5 V1_exvivo
- 6512 4729 12983 2.276 0.711 0.151 0.041 105 10.7 V2_exvivo
- 1248 922 3328 2.726 0.698 0.142 0.035 22 1.8 MT_exvivo
- 627 449 2008 3.042 0.913 0.119 0.030 7 0.9 perirhinal_exvivo
- 643 478 1767 2.925 0.807 0.130 0.028 9 0.9 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0051180 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 279764
- Total vertex volume 275690 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 656 486 1505 2.241 0.616 0.192 0.060 22 1.8 BA1_exvivo
- 1425 1049 3659 2.874 0.759 0.117 0.028 20 1.8 BA2_exvivo
- 821 562 955 2.231 0.429 0.121 0.025 5 0.8 BA3a_exvivo
- 1278 970 1993 1.816 0.481 0.098 0.019 9 1.0 BA3b_exvivo
- 1499 1048 4490 3.343 0.725 0.100 0.028 20 2.0 BA4a_exvivo
- 1063 728 2192 2.900 0.451 0.095 0.018 5 0.8 BA4p_exvivo
- 5332 3786 15374 3.128 0.726 0.127 0.032 69 6.6 BA6_exvivo
- 1220 910 3715 3.088 0.541 0.125 0.031 18 1.5 BA44_exvivo
- 1007 727 3358 3.136 0.670 0.136 0.033 18 1.5 BA45_exvivo
- 2512 1963 4367 1.869 0.602 0.147 0.039 41 4.1 V1_exvivo
- 3329 2463 6085 2.112 0.620 0.156 0.041 57 5.3 V2_exvivo
- 356 253 1099 2.853 0.754 0.151 0.036 9 0.4 MT_exvivo
- 309 226 1085 3.160 0.749 0.116 0.027 3 0.4 perirhinal_exvivo
- 372 277 1123 2.995 0.970 0.099 0.017 2 0.2 entorhinal_exvivo
- #--------------------------------------------
- #@# BA_exvivo Labels rh Sun Oct 8 03:44:51 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 21463 of (21463 21469 21475 21481 21487) to complete...
- Waiting for PID 21469 of (21463 21469 21475 21481 21487) to complete...
- Waiting for PID 21475 of (21463 21469 21475 21481 21487) to complete...
- Waiting for PID 21481 of (21463 21469 21475 21481 21487) to complete...
- Waiting for PID 21487 of (21463 21469 21475 21481 21487) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3962 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3962 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 246
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.label 4208
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6687 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6687 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 209
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.label 6896
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA3a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3980 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3980 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 57
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.label 4037
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA3b_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4522 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4522 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 153
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.label 4675
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA4a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5747 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5747 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 165
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.label 5912
- mri_label2label: Done
- PIDs (21463 21469 21475 21481 21487) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 21540 of (21540 21546 21552 21557) to complete...
- Waiting for PID 21546 of (21540 21546 21552 21557) to complete...
- Waiting for PID 21552 of (21540 21546 21552 21557) to complete...
- Waiting for PID 21557 of (21540 21546 21552 21557) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA4p_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4473 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4473 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 63
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.label 4536
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA6_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 12256 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 12256 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 840
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.label 13096
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA44_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6912 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 597
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.label 7509
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0051180 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA45_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5355 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5355 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 669
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.label 6024
- mri_label2label: Done
- PIDs (21540 21546 21552 21557) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0051180 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0051180 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0051180 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0051180 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0051180 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 21616 of (21616 21622 21628 21634 21638) to complete...
- Waiting for PID 21622 of (21616 21622 21628 21634 21638) to complete...
- Waiting for PID 21628 of (21616 21622 21628 21634 21638) to complete...
- Waiting for PID 21634 of (21616 21622 21628 21634 21638) to complete...
- Waiting for PID 21638 of (21616 21622 21628 21634 21638) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0051180 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.V1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4727 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4727 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 542
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.label 5269
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0051180 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.V2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8016 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8016 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 1133
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.label 9149
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0051180 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.MT_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1932 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1932 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 170
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.label 2102
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0051180 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1038 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1038 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 86
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.label 1124
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0051180 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 752 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 752 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 59
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.label 811
- mri_label2label: Done
- PIDs (21616 21622 21628 21634 21638) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 21711 of (21711 21717 21723 21729 21734) to complete...
- Waiting for PID 21717 of (21711 21717 21723 21729 21734) to complete...
- Waiting for PID 21723 of (21711 21717 21723 21729 21734) to complete...
- Waiting for PID 21729 of (21711 21717 21723 21729 21734) to complete...
- Waiting for PID 21734 of (21711 21717 21723 21729 21734) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 876 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 876 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 103
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.thresh.label 979
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2688 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2688 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 48
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.thresh.label 2736
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1698 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1698 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 9
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.thresh.label 1707
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2183 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2183 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 29
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.thresh.label 2212
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1388 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1388 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 30
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.thresh.label 1418
- mri_label2label: Done
- PIDs (21711 21717 21723 21729 21734) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 21779 of (21779 21785 21791 21797) to complete...
- Waiting for PID 21785 of (21779 21785 21791 21797) to complete...
- Waiting for PID 21791 of (21779 21785 21791 21797) to complete...
- Waiting for PID 21797 of (21779 21785 21791 21797) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1489 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1489 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 21
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.thresh.label 1510
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6959 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6959 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 378
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.thresh.label 7337
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1012 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1012 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 146
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.thresh.label 1158
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1178 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1178 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 100
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.thresh.label 1278
- mri_label2label: Done
- PIDs (21779 21785 21791 21797) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 21848 of (21848 21854 21860 21866 21872) to complete...
- Waiting for PID 21854 of (21848 21854 21860 21866 21872) to complete...
- Waiting for PID 21860 of (21848 21854 21860 21866 21872) to complete...
- Waiting for PID 21866 of (21848 21854 21860 21866 21872) to complete...
- Waiting for PID 21872 of (21848 21854 21860 21866 21872) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3232 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3232 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 310
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.thresh.label 3542
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3437 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3437 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 625
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.thresh.label 4062
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 268 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 268 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 24
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.thresh.label 292
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 694 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 694 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 38
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.thresh.label 732
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0051180 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0051180
- trglabel = ./rh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 291 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 291 nlabel points
- Performing mapping from target back to the source label 113646
- Number of reverse mapping hits = 26
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.thresh.label 317
- mri_label2label: Done
- PIDs (21848 21854 21860 21866 21872) completed and logs appended.
- mris_label2annot --s 0051180 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label
- cmdline mris_label2annot --s 0051180 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- subject 0051180
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 80860 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.BA_exvivo.annot
- mris_label2annot --s 0051180 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label
- cmdline mris_label2annot --s 0051180 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-970
- machine x86_64
- user ntraut
- subject 0051180
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 95533 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/label/rh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab 0051180 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 769 614 2010 2.262 0.618 0.195 0.054 25 2.0 BA1_exvivo
- 2303 1716 4713 2.288 0.595 0.119 0.030 27 3.1 BA2_exvivo
- 903 592 924 1.918 0.451 0.105 0.019 5 0.7 BA3a_exvivo
- 1483 1120 2469 1.826 0.547 0.134 0.030 23 2.1 BA3b_exvivo
- 1320 942 4310 3.372 0.696 0.093 0.016 9 0.9 BA4a_exvivo
- 1062 724 2252 2.760 0.603 0.097 0.019 7 0.8 BA4p_exvivo
- 7661 5595 22298 3.088 0.834 0.121 0.030 95 9.9 BA6_exvivo
- 3228 2351 7711 2.707 0.668 0.128 0.034 47 4.4 BA44_exvivo
- 3460 2492 8429 2.558 0.677 0.136 0.040 69 6.2 BA45_exvivo
- 2544 1976 4521 2.009 0.602 0.146 0.041 39 4.5 V1_exvivo
- 5814 4280 12728 2.394 0.742 0.160 0.044 110 10.7 V2_exvivo
- 1368 991 3478 2.581 0.701 0.142 0.036 26 2.5 MT_exvivo
- 543 430 2839 3.769 0.632 0.155 0.032 7 0.9 perirhinal_exvivo
- 328 274 1307 3.445 0.634 0.189 0.051 10 0.7 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0051180 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0051180/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 264851
- Total vertex volume 261441 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1287840 mm^3 (det: 1.512691 )
- lhCtxGM: 273073.373 273028.000 diff= 45.4 pctdiff= 0.017
- rhCtxGM: 259299.909 258457.000 diff= 842.9 pctdiff= 0.325
- lhCtxWM: 183528.148 183304.500 diff= 223.6 pctdiff= 0.122
- rhCtxWM: 179067.324 181235.500 diff=-2168.2 pctdiff=-1.211
- SubCortGMVol 55565.000
- SupraTentVol 984580.754 (982591.000) diff=1989.754 pctdiff=0.202
- SupraTentVolNotVent 953666.754 (951677.000) diff=1989.754 pctdiff=0.209
- BrainSegVol 1079683.000 (1076921.000) diff=2762.000 pctdiff=0.256
- BrainSegVolNotVent 1045022.000 (1043805.754) diff=1216.246 pctdiff=0.116
- BrainSegVolNotVent 1045022.000
- CerebellumVol 93185.000
- VentChorVol 30914.000
- 3rd4th5thCSF 3747.000
- CSFVol 985.000, OptChiasmVol 160.000
- MaskVol 1548698.000
- 469 388 1175 2.130 0.570 0.202 0.074 18 1.7 BA1_exvivo
- 1302 976 2632 2.210 0.592 0.116 0.027 16 1.5 BA2_exvivo
- 802 521 759 1.917 0.380 0.106 0.018 4 0.6 BA3a_exvivo
- 1089 846 1524 1.681 0.421 0.111 0.018 9 0.9 BA3b_exvivo
- 813 572 3271 3.788 0.651 0.115 0.022 9 0.7 BA4a_exvivo
- 846 598 1603 2.723 0.508 0.091 0.016 4 0.6 BA4p_exvivo
- 4753 3486 13035 2.966 0.813 0.119 0.029 58 5.9 BA6_exvivo
- 878 644 2492 2.943 0.610 0.158 0.044 18 1.6 BA44_exvivo
- 856 640 2708 2.864 0.730 0.146 0.044 18 1.8 BA45_exvivo
- 2378 1836 4054 1.993 0.585 0.144 0.042 36 4.2 V1_exvivo
- 3180 2407 7039 2.301 0.781 0.171 0.047 65 6.6 V2_exvivo
- 196 162 679 2.800 0.639 0.143 0.039 3 0.4 MT_exvivo
- 312 256 1823 3.905 0.526 0.135 0.019 3 0.3 perirhinal_exvivo
- 239 202 1046 3.808 0.496 0.238 0.060 10 0.7 entorhinal_exvivo
- Started at Sat Oct 7 19:18:39 CEST 2017
- Ended at Sun Oct 8 03:47:31 CEST 2017
- #@#%# recon-all-run-time-hours 8.481
- recon-all -s 0051180 finished without error at Sun Oct 8 03:47:32 CEST 2017
|
