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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051147
- # sysname Linux
- # hostname tars-617
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051147
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1245162.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1206962.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1206947.645427, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 33886.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273400.435258, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 268839.650266, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 542240.085524, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 231977.530591, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 229005.029312, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 460982.559904, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 61751.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 722784.085524, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1100408.645427, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1066522.645427, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1064841.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1734580.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.733103, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.021253, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 49, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 53, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 102, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1698482.235871, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 02:07:00
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 18:20:24
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 18:20:24
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 16351 16505.9 Left-Lateral-Ventricle 14.7661 11.6746 0.0000 86.0000 86.0000
- 2 5 404 422.7 Left-Inf-Lat-Vent 30.6510 16.1188 1.0000 77.0000 76.0000
- 3 7 12023 12696.0 Left-Cerebellum-White-Matter 81.0306 8.2538 9.0000 108.0000 99.0000
- 4 8 60352 60425.4 Left-Cerebellum-Cortex 52.4399 12.2429 1.0000 101.0000 100.0000
- 5 10 7790 7551.3 Left-Thalamus-Proper 80.1664 10.9632 17.0000 109.0000 92.0000
- 6 11 4254 4248.3 Left-Caudate 68.9304 8.5123 37.0000 93.0000 56.0000
- 7 12 5999 5825.7 Left-Putamen 77.6821 7.6020 30.0000 102.0000 72.0000
- 8 13 2433 2425.2 Left-Pallidum 92.6695 4.8106 73.0000 108.0000 35.0000
- 9 14 1255 1300.9 3rd-Ventricle 24.5299 14.6945 0.0000 62.0000 62.0000
- 10 15 1582 1760.1 4th-Ventricle 21.3388 12.1444 0.0000 64.0000 64.0000
- 11 16 20375 20361.4 Brain-Stem 79.6866 10.8873 10.0000 159.0000 149.0000
- 12 17 3622 3423.1 Left-Hippocampus 56.6977 10.3834 5.0000 129.0000 124.0000
- 13 18 1538 1471.2 Left-Amygdala 56.8225 7.2040 28.0000 96.0000 68.0000
- 14 24 1483 1440.6 CSF 32.5314 13.7347 2.0000 78.0000 76.0000
- 15 26 702 688.7 Left-Accumbens-area 64.4858 5.2701 39.0000 83.0000 44.0000
- 16 28 4227 4054.9 Left-VentralDC 83.3830 13.5910 26.0000 131.0000 105.0000
- 17 30 27 37.1 Left-vessel 56.4074 7.6624 36.0000 66.0000 30.0000
- 18 31 1075 930.1 Left-choroid-plexus 42.0912 11.9753 10.0000 80.0000 70.0000
- 19 43 15123 15411.6 Right-Lateral-Ventricle 15.9902 12.1045 0.0000 81.0000 81.0000
- 20 44 352 379.4 Right-Inf-Lat-Vent 32.2188 16.1752 0.0000 72.0000 72.0000
- 21 46 11126 11692.1 Right-Cerebellum-White-Matter 81.9802 7.8407 26.0000 111.0000 85.0000
- 22 47 58184 58527.8 Right-Cerebellum-Cortex 53.4232 12.1689 0.0000 111.0000 111.0000
- 23 49 8108 7830.8 Right-Thalamus-Proper 80.4417 10.7618 26.0000 107.0000 81.0000
- 24 50 4566 4494.2 Right-Caudate 69.8265 9.2239 36.0000 109.0000 73.0000
- 25 51 5956 5808.7 Right-Putamen 77.5007 7.0529 46.0000 103.0000 57.0000
- 26 52 2245 2188.9 Right-Pallidum 92.8004 4.7780 53.0000 107.0000 54.0000
- 27 53 3603 3432.1 Right-Hippocampus 56.6009 10.3003 1.0000 96.0000 95.0000
- 28 54 1932 1855.4 Right-Amygdala 58.8665 7.8513 29.0000 92.0000 63.0000
- 29 58 745 704.2 Right-Accumbens-area 66.1624 5.8825 44.0000 90.0000 46.0000
- 30 60 4096 3844.2 Right-VentralDC 81.8401 14.2197 14.0000 127.0000 113.0000
- 31 62 5 9.3 Right-vessel 59.4000 6.4265 49.0000 65.0000 16.0000
- 32 63 741 622.9 Right-choroid-plexus 43.6181 12.4820 14.0000 81.0000 67.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1079 902.1 WM-hypointensities 66.1464 11.3348 31.0000 96.0000 65.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 189 172.9 Optic-Chiasm 78.7672 23.8909 12.0000 131.0000 119.0000
- 41 251 1290 1207.2 CC_Posterior 94.0767 18.8089 22.0000 121.0000 99.0000
- 42 252 808 731.6 CC_Mid_Posterior 83.7723 21.9945 33.0000 118.0000 85.0000
- 43 253 570 519.4 CC_Central 95.4404 17.0412 41.0000 132.0000 91.0000
- 44 254 534 488.8 CC_Mid_Anterior 97.5206 15.7930 41.0000 122.0000 81.0000
- 45 255 1181 1114.8 CC_Anterior 99.3057 18.7994 36.0000 148.0000 112.0000
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