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0051130
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051130 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-552
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051130
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 18605.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 215936.326070, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 220294.440816, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 436230.766886, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1567893.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1483424.571486, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 01:05:02 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 18:22:07 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 18:22:07 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3093     3075.7  wm-lh-bankssts                   100.8322     7.0331    76.0000   119.0000    43.0000 
    66. 

  66.   2 3002      2439     2401.0  wm-lh-caudalanteriorcingulate    100.4912     9.5151    39.0000   125.0000    86.0000 
    67. 

  67.   3 3003      5706     5693.7  wm-lh-caudalmiddlefrontal         97.8395     8.5505    70.0000   115.0000    45.0000 
    68. 

  68.   4 3005      2912     2877.3  wm-lh-cuneus                      98.3530     9.7676    69.0000   125.0000    56.0000 
    69. 

  69.   5 3006       703      749.9  wm-lh-entorhinal                  78.2006     9.2150    59.0000   103.0000    44.0000 
    70. 

  70.   6 3007      6479     6455.5  wm-lh-fusiform                    90.3149     9.8756    58.0000   115.0000    57.0000 
    71. 

  71.   7 3008      9149     9256.1  wm-lh-inferiorparietal           101.8880     9.0210    70.0000   124.0000    54.0000 
    72. 

  72.   8 3009      5389     5459.0  wm-lh-inferiortemporal            87.1590    10.9330    59.0000   113.0000    54.0000 
    73. 

  73.   9 3010      3444     3483.5  wm-lh-isthmuscingulate            99.9939     8.4418    42.0000   119.0000    77.0000 
    74. 

  74.  10 3011      9910    10261.1  wm-lh-lateraloccipital            95.8286    10.8102    59.0000   130.0000    71.0000 
    75. 

  75.  11 3012      6821     6833.3  wm-lh-lateralorbitofrontal        97.2488    10.4195    62.0000   119.0000    57.0000 
    76. 

  76.  12 3013      6119     6179.4  wm-lh-lingual                     91.9330    10.0795    35.0000   122.0000    87.0000 
    77. 

  77.  13 3014      3383     3302.3  wm-lh-medialorbitofrontal         93.4591    12.8512    19.0000   119.0000   100.0000 
    78. 

  78.  14 3015      5301     5466.9  wm-lh-middletemporal              93.6003     9.6213    60.0000   115.0000    55.0000 
    79. 

  79.  15 3016      1416     1463.1  wm-lh-parahippocampal             90.2083    10.1119    58.0000   115.0000    57.0000 
    80. 

  80.  16 3017      3712     3762.1  wm-lh-paracentral                 96.0921     7.4504    73.0000   114.0000    41.0000 
    81. 

  81.  17 3018      3082     3074.3  wm-lh-parsopercularis             98.2245     9.0914    72.0000   117.0000    45.0000 
    82. 

  82.  18 3019       945      931.8  wm-lh-parsorbitalis               95.4074    10.4562    69.0000   116.0000    47.0000 
    83. 

  83.  19 3020      2670     2672.0  wm-lh-parstriangularis           100.4296     8.8870    72.0000   121.0000    49.0000 
    84. 

  84.  20 3021      3902     3732.2  wm-lh-pericalcarine               95.7043     9.8517    54.0000   128.0000    74.0000 
    85. 

  85.  21 3022      6664     6869.5  wm-lh-postcentral                 95.1535     9.4454    68.0000   119.0000    51.0000 
    86. 

  86.  22 3023      4482     4436.9  wm-lh-posteriorcingulate          98.5564     9.0420    31.0000   118.0000    87.0000 
    87. 

  87.  23 3024     12384    12581.6  wm-lh-precentral                  96.9591     7.9878    70.0000   116.0000    46.0000 
    88. 

  88.  24 3025      8490     8426.7  wm-lh-precuneus                   98.5515    10.3524    31.0000   120.0000    89.0000 
    89. 

  89.  25 3026      2789     2682.0  wm-lh-rostralanteriorcingulate    95.8071    14.6533     2.0000   129.0000   127.0000 
    90. 

  90.  26 3027     10776    10805.5  wm-lh-rostralmiddlefrontal        98.4361     9.7339    68.0000   121.0000    53.0000 
    91. 

  91.  27 3028     18150    18159.5  wm-lh-superiorfrontal             94.9481     9.0490    63.0000   117.0000    54.0000 
    92. 

  92.  28 3029     11378    11515.3  wm-lh-superiorparietal           100.2047     8.2736    73.0000   122.0000    49.0000 
    93. 

  93.  29 3030      6852     7078.8  wm-lh-superiortemporal            96.3489     9.8420    64.0000   118.0000    54.0000 
    94. 

  94.  30 3031      8066     8122.5  wm-lh-supramarginal              101.9023     8.7928    69.0000   122.0000    53.0000 
    95. 

  95.  31 3032       273      275.5  wm-lh-frontalpole                 91.8168     9.6404    70.0000   113.0000    43.0000 
    96. 

  96.  32 3033       587      634.8  wm-lh-temporalpole                80.3032     8.7414    57.0000   104.0000    47.0000 
    97. 

  97.  33 3034       582      587.6  wm-lh-transversetemporal          96.0395     7.6624    78.0000   112.0000    34.0000 
    98. 

  98.  34 3035      8580     8511.1  wm-lh-insula                      92.2045    11.0292    50.0000   118.0000    68.0000 
    99. 

  99.  35 4001      2938     2906.0  wm-rh-bankssts                    99.8775     7.2673    74.0000   117.0000    43.0000 
    100. 

  100.  36 4002      3367     3335.6  wm-rh-caudalanteriorcingulate    100.2376     8.4255    43.0000   118.0000    75.0000 
    101. 

  101.  37 4003      5062     5064.3  wm-rh-caudalmiddlefrontal         96.9194     8.5941    69.0000   116.0000    47.0000 
    102. 

  102.  38 4005      2725     2711.0  wm-rh-cuneus                      96.5218     9.3959    70.0000   138.0000    68.0000 
    103. 

  103.  39 4006       745      776.0  wm-rh-entorhinal                  82.4859     9.4412    62.0000   109.0000    47.0000 
    104. 

  104.  40 4007      5647     5687.1  wm-rh-fusiform                    91.0303    10.0088    62.0000   116.0000    54.0000 
    105. 

  105.  41 4008     11991    12149.8  wm-rh-inferiorparietal           100.5349     9.0220    67.0000   130.0000    63.0000 
    106. 

  106.  42 4009      6256     6385.3  wm-rh-inferiortemporal            90.4792    10.2415    63.0000   117.0000    54.0000 
    107. 

  107.  43 4010      3120     3164.3  wm-rh-isthmuscingulate            99.6282     8.2009    34.0000   122.0000    88.0000 
    108. 

  108.  44 4011     11023    11290.3  wm-rh-lateraloccipital            96.7799    10.5986    61.0000   139.0000    78.0000 
    109. 

  109.  45 4012      7207     7139.4  wm-rh-lateralorbitofrontal        93.1414    11.9763    15.0000   117.0000   102.0000 
    110. 

  110.  46 4013      6862     6877.8  wm-rh-lingual                     91.9647    10.6722    33.0000   135.0000   102.0000 
    111. 

  111.  47 4014      3756     3686.7  wm-rh-medialorbitofrontal         94.2793    13.2212    25.0000   122.0000    97.0000 
    112. 

  112.  48 4015      5844     5971.2  wm-rh-middletemporal              93.2733     9.8288    65.0000   118.0000    53.0000 
    113. 

  113.  49 4016      1481     1524.8  wm-rh-parahippocampal             90.6016     9.4120    49.0000   113.0000    64.0000 
    114. 

  114.  50 4017      4717     4738.1  wm-rh-paracentral                 94.8893     7.3961    69.0000   111.0000    42.0000 
    115. 

  115.  51 4018      3042     3025.7  wm-rh-parsopercularis             96.1709     9.5285    68.0000   117.0000    49.0000 
    116. 

  116.  52 4019      1204     1208.6  wm-rh-parsorbitalis               92.4427    10.5526    68.0000   117.0000    49.0000 
    117. 

  117.  53 4020      3071     3060.0  wm-rh-parstriangularis            95.9202     9.4918    66.0000   115.0000    49.0000 
    118. 

  118.  54 4021      3702     3554.7  wm-rh-pericalcarine               94.3863    10.0930    59.0000   131.0000    72.0000 
    119. 

  119.  55 4022      6669     6820.8  wm-rh-postcentral                 93.4623     9.3529    67.0000   117.0000    50.0000 
    120. 

  120.  56 4023      4768     4757.9  wm-rh-posteriorcingulate          96.7110     8.5067    46.0000   123.0000    77.0000 
    121. 

  121.  57 4024     12688    12828.6  wm-rh-precentral                  95.5037     7.8153    69.0000   115.0000    46.0000 
    122. 

  122.  58 4025      9479     9358.9  wm-rh-precuneus                   97.2920     8.6456    55.0000   118.0000    63.0000 
    123. 

  123.  59 4026      2021     1947.1  wm-rh-rostralanteriorcingulate    97.6606    11.2143    50.0000   121.0000    71.0000 
    124. 

  124.  60 4027     10079    10117.7  wm-rh-rostralmiddlefrontal        96.4790    10.0398    65.0000   117.0000    52.0000 
    125. 

  125.  61 4028     17086    17093.6  wm-rh-superiorfrontal             95.0231     9.0680    63.0000   117.0000    54.0000 
    126. 

  126.  62 4029      9940    10136.1  wm-rh-superiorparietal            97.4926     8.7658    68.0000   120.0000    52.0000 
    127. 

  127.  63 4030      5270     5443.3  wm-rh-superiortemporal            93.5292    10.0027    62.0000   117.0000    55.0000 
    128. 

  128.  64 4031      7745     7784.3  wm-rh-supramarginal               98.4473     9.2127    67.0000   118.0000    51.0000 
    129. 

  129.  65 4032       360      370.5  wm-rh-frontalpole                 91.9806     8.8354    75.0000   110.0000    35.0000 
    130. 

  130.  66 4033       629      638.8  wm-rh-temporalpole                81.9762     8.6996    63.0000   104.0000    41.0000 
    131. 

  131.  67 4034       607      593.2  wm-rh-transversetemporal          99.8517     7.3294    78.0000   117.0000    39.0000 
    132. 

  132.  68 4035      9040     8954.8  wm-rh-insula                      91.5272    10.6985    60.0000   118.0000    58.0000 
    133. 

  133.  69 5001     27592    27466.7  Left-UnsegmentedWhiteMatter       99.1072    10.4702    20.0000   120.0000   100.0000 
    134. 

  134.  70 5002     28967    28869.1  Right-UnsegmentedWhiteMatter      98.1503     9.6305    18.0000   124.0000   106.0000 
    135.