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0051126
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051126 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-575
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051126
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8132.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 211074.232566, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 213980.952909, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 425055.185475, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1517988.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1403828.878909, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 03:21:23 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 18:23:32 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 18:23:32 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2829     2820.0  wm-lh-bankssts                    98.9594     8.0611    71.0000   116.0000    45.0000 
    66. 

  66.   2 3002      2763     2668.9  wm-lh-caudalanteriorcingulate    100.0366    10.0905    43.0000   121.0000    78.0000 
    67. 

  67.   3 3003      5835     5826.3  wm-lh-caudalmiddlefrontal         98.5219     9.0637    68.0000   117.0000    49.0000 
    68. 

  68.   4 3005      2523     2583.5  wm-lh-cuneus                      95.4653     9.9998    71.0000   124.0000    53.0000 
    69. 

  69.   5 3006       603      647.0  wm-lh-entorhinal                  83.3333     8.8790    58.0000   110.0000    52.0000 
    70. 

  70.   6 3007      6019     5977.2  wm-lh-fusiform                    88.1881     9.8312    60.0000   116.0000    56.0000 
    71. 

  71.   7 3008      8345     8375.9  wm-lh-inferiorparietal            96.9883     9.9432    64.0000   119.0000    55.0000 
    72. 

  72.   8 3009      6619     6671.7  wm-lh-inferiortemporal            87.3124    10.7263    56.0000   118.0000    62.0000 
    73. 

  73.   9 3010      2603     2592.1  wm-lh-isthmuscingulate            98.1333    10.9934    31.0000   119.0000    88.0000 
    74. 

  74.  10 3011      8022     8143.7  wm-lh-lateraloccipital            88.2047    11.3716    59.0000   120.0000    61.0000 
    75. 

  75.  11 3012      6158     6089.9  wm-lh-lateralorbitofrontal        96.5942    10.6784    64.0000   121.0000    57.0000 
    76. 

  76.  12 3013      5329     5343.1  wm-lh-lingual                     87.5369    10.8392    42.0000   123.0000    81.0000 
    77. 

  77.  13 3014      2696     2695.5  wm-lh-medialorbitofrontal         94.0516    11.7884    51.0000   118.0000    67.0000 
    78. 

  78.  14 3015      6261     6360.1  wm-lh-middletemporal              91.6871     9.9531    63.0000   116.0000    53.0000 
    79. 

  79.  15 3016      1128     1206.3  wm-lh-parahippocampal             89.0816     9.5634    61.0000   128.0000    67.0000 
    80. 

  80.  16 3017      4033     3992.0  wm-lh-paracentral                 97.6888     8.4097    69.0000   115.0000    46.0000 
    81. 

  81.  17 3018      3153     3118.5  wm-lh-parsopercularis             97.8801    10.2492    70.0000   117.0000    47.0000 
    82. 

  82.  18 3019       981      983.0  wm-lh-parsorbitalis               91.6820    10.8395    70.0000   114.0000    44.0000 
    83. 

  83.  19 3020      2835     2803.7  wm-lh-parstriangularis            98.2409    10.5297    68.0000   119.0000    51.0000 
    84. 

  84.  20 3021      4526     4372.4  wm-lh-pericalcarine               93.5440    10.2516    53.0000   123.0000    70.0000 
    85. 

  85.  21 3022      6940     7081.4  wm-lh-postcentral                 96.4755     8.9560    70.0000   118.0000    48.0000 
    86. 

  86.  22 3023      4412     4333.8  wm-lh-posteriorcingulate          99.1469    10.2829    43.0000   120.0000    77.0000 
    87. 

  87.  23 3024     13373    13463.2  wm-lh-precentral                  97.2976     8.1570    70.0000   119.0000    49.0000 
    88. 

  88.  24 3025     10362    10294.5  wm-lh-precuneus                   99.2177     9.6518    36.0000   120.0000    84.0000 
    89. 

  89.  25 3026      2868     2790.2  wm-lh-rostralanteriorcingulate   100.8570    10.9242    52.0000   137.0000    85.0000 
    90. 

  90.  26 3027     13628    13671.0  wm-lh-rostralmiddlefrontal        97.7198    10.5429    66.0000   122.0000    56.0000 
    91. 

  91.  27 3028     19355    19353.3  wm-lh-superiorfrontal             95.8337     9.4692    67.0000   118.0000    51.0000 
    92. 

  92.  28 3029     12020    12025.7  wm-lh-superiorparietal            96.8833     9.6780    67.0000   119.0000    52.0000 
    93. 

  93.  29 3030      5981     6084.0  wm-lh-superiortemporal            92.7775    10.7108    61.0000   121.0000    60.0000 
    94. 

  94.  30 3031      8249     8344.8  wm-lh-supramarginal               99.8020     9.4364    72.0000   122.0000    50.0000 
    95. 

  95.  31 3032       271      279.2  wm-lh-frontalpole                 91.3137     9.0395    73.0000   115.0000    42.0000 
    96. 

  96.  32 3033       689      760.4  wm-lh-temporalpole                80.9986     9.3126    55.0000   105.0000    50.0000 
    97. 

  97.  33 3034       902      874.1  wm-lh-transversetemporal          96.9856     9.3290    74.0000   116.0000    42.0000 
    98. 

  98.  34 3035      9437     9325.8  wm-lh-insula                      92.7178    11.7492    54.0000   118.0000    64.0000 
    99. 

  99.  35 4001      2396     2370.4  wm-rh-bankssts                   100.9783     7.6392    71.0000   121.0000    50.0000 
    100. 

  100.  36 4002      3214     3082.3  wm-rh-caudalanteriorcingulate     97.8584    12.3279    39.0000   124.0000    85.0000 
    101. 

  101.  37 4003      6656     6659.8  wm-rh-caudalmiddlefrontal         97.8950     9.3167    67.0000   118.0000    51.0000 
    102. 

  102.  38 4005      2719     2726.3  wm-rh-cuneus                      91.3608     9.4463    64.0000   120.0000    56.0000 
    103. 

  103.  39 4006       548      589.9  wm-rh-entorhinal                  80.9270    10.2806    57.0000   107.0000    50.0000 
    104. 

  104.  40 4007      5090     5051.7  wm-rh-fusiform                    88.2601     9.5270    59.0000   114.0000    55.0000 
    105. 

  105.  41 4008     11128    11238.9  wm-rh-inferiorparietal            97.1017     9.8169    66.0000   122.0000    56.0000 
    106. 

  106.  42 4009      5846     5958.0  wm-rh-inferiortemporal            89.3395    11.2424    56.0000   116.0000    60.0000 
    107. 

  107.  43 4010      2629     2649.1  wm-rh-isthmuscingulate            97.1769    10.2998    33.0000   121.0000    88.0000 
    108. 

  108.  44 4011      8980     9168.9  wm-rh-lateraloccipital            88.4528    10.5202    60.0000   126.0000    66.0000 
    109. 

  109.  45 4012      6697     6641.0  wm-rh-lateralorbitofrontal        92.8328    12.4794    44.0000   121.0000    77.0000 
    110. 

  110.  46 4013      6441     6358.5  wm-rh-lingual                     87.4485    11.7271    31.0000   117.0000    86.0000 
    111. 

  111.  47 4014      3349     3289.5  wm-rh-medialorbitofrontal         92.8925    12.7437    29.0000   118.0000    89.0000 
    112. 

  112.  48 4015      6341     6523.7  wm-rh-middletemporal              93.1724    10.6026    61.0000   118.0000    57.0000 
    113. 

  113.  49 4016      1064     1112.6  wm-rh-parahippocampal             91.3712     9.0002    69.0000   115.0000    46.0000 
    114. 

  114.  50 4017      5355     5309.9  wm-rh-paracentral                 97.0790     8.0672    69.0000   115.0000    46.0000 
    115. 

  115.  51 4018      2946     2932.3  wm-rh-parsopercularis             97.2254    10.0924    68.0000   119.0000    51.0000 
    116. 

  116.  52 4019      1084     1092.7  wm-rh-parsorbitalis               89.9511    10.0014    65.0000   115.0000    50.0000 
    117. 

  117.  53 4020      3895     3905.6  wm-rh-parstriangularis            96.1237    10.0576    65.0000   121.0000    56.0000 
    118. 

  118.  54 4021      4504     4344.7  wm-rh-pericalcarine               89.6623     9.7731    62.0000   122.0000    60.0000 
    119. 

  119.  55 4022      6729     6782.8  wm-rh-postcentral                 95.0382     9.5577    67.0000   118.0000    51.0000 
    120. 

  120.  56 4023      4562     4459.8  wm-rh-posteriorcingulate          96.8865    10.3629    36.0000   122.0000    86.0000 
    121. 

  121.  57 4024     12816    12790.7  wm-rh-precentral                  95.8529     8.5948    68.0000   118.0000    50.0000 
    122. 

  122.  58 4025      9247     9165.1  wm-rh-precuneus                   95.9035     9.4361    51.0000   118.0000    67.0000 
    123. 

  123.  59 4026      1922     1841.5  wm-rh-rostralanteriorcingulate    96.1098    12.2681    41.0000   119.0000    78.0000 
    124. 

  124.  60 4027     12884    12990.6  wm-rh-rostralmiddlefrontal        96.1852    10.3556    63.0000   118.0000    55.0000 
    125. 

  125.  61 4028     19301    19228.4  wm-rh-superiorfrontal             95.7755     9.3122    64.0000   118.0000    54.0000 
    126. 

  126.  62 4029     11718    11751.7  wm-rh-superiorparietal            95.4938     9.5884    66.0000   120.0000    54.0000 
    127. 

  127.  63 4030      5626     5814.7  wm-rh-superiortemporal            93.8997    10.0768    59.0000   118.0000    59.0000 
    128. 

  128.  64 4031      7623     7716.3  wm-rh-supramarginal               99.9307     9.4751    66.0000   125.0000    59.0000 
    129. 

  129.  65 4032       238      227.8  wm-rh-frontalpole                 88.1134     9.4024    63.0000   113.0000    50.0000 
    130. 

  130.  66 4033       722      749.1  wm-rh-temporalpole                81.1454     9.2723    58.0000   105.0000    47.0000 
    131. 

  131.  67 4034       492      472.9  wm-rh-transversetemporal          93.6484     8.5763    77.0000   115.0000    38.0000 
    132. 

  132.  68 4035      9385     9314.9  wm-rh-insula                      92.5380    11.5336     8.0000   117.0000   109.0000 
    133. 

  133.  69 5001     17344    17175.1  Left-UnsegmentedWhiteMatter       98.7070    11.1490    13.0000   122.0000   109.0000 
    134. 

  134.  70 5002     19593    19742.5  Right-UnsegmentedWhiteMatter      98.9339     9.9707    21.0000   122.0000   101.0000 
    135.