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0050756
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050756 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-551
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050756
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 24057.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 258421.085665, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 256037.213822, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 514458.299488, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1841154.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1768354.456596, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 02:06:51 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 17:23:15 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 17:23:15 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      4074     4121.2  wm-lh-bankssts                    96.8633    10.4667    66.0000   116.0000    50.0000 
    66. 

  66.   2 3002      2632     2652.8  wm-lh-caudalanteriorcingulate    103.1440     9.1722    49.0000   117.0000    68.0000 
    67. 

  67.   3 3003      6603     6533.5  wm-lh-caudalmiddlefrontal         96.9093    11.9314    61.0000   116.0000    55.0000 
    68. 

  68.   4 3005      3170     3137.6  wm-lh-cuneus                      92.4211    12.9607    50.0000   116.0000    66.0000 
    69. 

  69.   5 3006      1203     1220.9  wm-lh-entorhinal                  78.2793     9.0891    54.0000   100.0000    46.0000 
    70. 

  70.   6 3007      7214     7216.6  wm-lh-fusiform                    88.1992    11.5964    53.0000   112.0000    59.0000 
    71. 

  71.   7 3008     11997    12103.8  wm-lh-inferiorparietal            98.0384    11.9528    62.0000   119.0000    57.0000 
    72. 

  72.   8 3009      6626     6629.8  wm-lh-inferiortemporal            88.3628    12.2120    53.0000   113.0000    60.0000 
    73. 

  73.   9 3010      4749     4824.4  wm-lh-isthmuscingulate           103.1070    10.6423    25.0000   119.0000    94.0000 
    74. 

  74.  10 3011     10515    10648.5  wm-lh-lateraloccipital            87.1416    13.3014    49.0000   115.0000    66.0000 
    75. 

  75.  11 3012      7294     7227.9  wm-lh-lateralorbitofrontal        95.2916    11.8034    58.0000   121.0000    63.0000 
    76. 

  76.  12 3013      7282     7234.4  wm-lh-lingual                     87.0396    11.7362    26.0000   112.0000    86.0000 
    77. 

  77.  13 3014      4030     4025.7  wm-lh-medialorbitofrontal         93.5797    13.1981    28.0000   120.0000    92.0000 
    78. 

  78.  14 3015      5832     5971.3  wm-lh-middletemporal              88.4549    12.1396    55.0000   112.0000    57.0000 
    79. 

  79.  15 3016      1749     1836.2  wm-lh-parahippocampal             85.6850     9.3693    60.0000   110.0000    50.0000 
    80. 

  80.  16 3017      4526     4512.3  wm-lh-paracentral                 93.8011     9.5081    58.0000   113.0000    55.0000 
    81. 

  81.  17 3018      3489     3500.4  wm-lh-parsopercularis             97.5128    12.0395    64.0000   119.0000    55.0000 
    82. 

  82.  18 3019      1106     1139.8  wm-lh-parsorbitalis               92.2414    11.7654    64.0000   121.0000    57.0000 
    83. 

  83.  19 3020      3194     3178.7  wm-lh-parstriangularis            95.5147    11.4279    62.0000   120.0000    58.0000 
    84. 

  84.  20 3021      4189     3939.1  wm-lh-pericalcarine               88.1225    12.3242    54.0000   115.0000    61.0000 
    85. 

  85.  21 3022      7987     7996.7  wm-lh-postcentral                 91.2961    12.3581    61.0000   116.0000    55.0000 
    86. 

  86.  22 3023      4227     4202.8  wm-lh-posteriorcingulate         100.8578    11.2683    38.0000   120.0000    82.0000 
    87. 

  87.  23 3024     12052    12105.0  wm-lh-precentral                  95.2722    11.1902    61.0000   119.0000    58.0000 
    88. 

  88.  24 3025     10114    10099.4  wm-lh-precuneus                   98.2830    11.8251    45.0000   119.0000    74.0000 
    89. 

  89.  25 3026      3015     2914.5  wm-lh-rostralanteriorcingulate    95.2740    17.0408     6.0000   128.0000   122.0000 
    90. 

  90.  26 3027     16045    16133.2  wm-lh-rostralmiddlefrontal        96.3839    11.7234    62.0000   119.0000    57.0000 
    91. 

  91.  27 3028     19364    19347.8  wm-lh-superiorfrontal             93.0823    11.6817    57.0000   119.0000    62.0000 
    92. 

  92.  28 3029     13623    13785.3  wm-lh-superiorparietal            96.6802    11.7947    57.0000   119.0000    62.0000 
    93. 

  93.  29 3030      9182     9465.6  wm-lh-superiortemporal            93.9740    12.0757    56.0000   120.0000    64.0000 
    94. 

  94.  30 3031      9641     9697.1  wm-lh-supramarginal               97.1722    12.0587    59.0000   119.0000    60.0000 
    95. 

  95.  31 3032       265      262.6  wm-lh-frontalpole                 87.8189    11.1047    57.0000   110.0000    53.0000 
    96. 

  96.  32 3033       959      971.8  wm-lh-temporalpole                76.6382    11.4591    52.0000   103.0000    51.0000 
    97. 

  97.  33 3034      1058     1042.9  wm-lh-transversetemporal          97.8365    10.0965    65.0000   117.0000    52.0000 
    98. 

  98.  34 3035      9995     9902.3  wm-lh-insula                      94.1817    12.4578    54.0000   118.0000    64.0000 
    99. 

  99.  35 4001      3045     3035.1  wm-rh-bankssts                    94.6506    10.3327    61.0000   116.0000    55.0000 
    100. 

  100.  36 4002      2856     2821.9  wm-rh-caudalanteriorcingulate     98.6229    12.6516    38.0000   124.0000    86.0000 
    101. 

  101.  37 4003      6946     6942.2  wm-rh-caudalmiddlefrontal         95.1530    11.6923    60.0000   118.0000    58.0000 
    102. 

  102.  38 4005      2292     2327.3  wm-rh-cuneus                      89.0633    12.0207    59.0000   116.0000    57.0000 
    103. 

  103.  39 4006       949     1027.3  wm-rh-entorhinal                  78.1191     9.4541    55.0000   110.0000    55.0000 
    104. 

  104.  40 4007      7415     7441.8  wm-rh-fusiform                    89.0086    12.0338    51.0000   114.0000    63.0000 
    105. 

  105.  41 4008     12052    12103.1  wm-rh-inferiorparietal            94.1957    11.8574    48.0000   116.0000    68.0000 
    106. 

  106.  42 4009      7328     7350.2  wm-rh-inferiortemporal            84.8066    12.3632    49.0000   110.0000    61.0000 
    107. 

  107.  43 4010      3127     3177.0  wm-rh-isthmuscingulate           101.3665    10.3986    45.0000   121.0000    76.0000 
    108. 

  108.  44 4011     11948    12127.8  wm-rh-lateraloccipital            88.4332    12.5334    47.0000   114.0000    67.0000 
    109. 

  109.  45 4012      7307     7209.7  wm-rh-lateralorbitofrontal        92.6263    12.5915    53.0000   120.0000    67.0000 
    110. 

  110.  46 4013      6333     6272.9  wm-rh-lingual                     88.6027    12.5615    19.0000   115.0000    96.0000 
    111. 

  111.  47 4014      4188     4227.0  wm-rh-medialorbitofrontal         92.9503    13.0054    39.0000   118.0000    79.0000 
    112. 

  112.  48 4015      6680     6819.0  wm-rh-middletemporal              85.0467    12.0800    51.0000   111.0000    60.0000 
    113. 

  113.  49 4016      1954     2013.9  wm-rh-parahippocampal             85.4678     9.6863    58.0000   112.0000    54.0000 
    114. 

  114.  50 4017      5375     5361.4  wm-rh-paracentral                 93.1258     9.9960    59.0000   112.0000    53.0000 
    115. 

  115.  51 4018      3010     2990.1  wm-rh-parsopercularis             94.2890    12.1593    59.0000   114.0000    55.0000 
    116. 

  116.  52 4019      1268     1288.9  wm-rh-parsorbitalis               85.5931    11.2514    59.0000   109.0000    50.0000 
    117. 

  117.  53 4020      3090     3117.2  wm-rh-parstriangularis            93.6515    11.3779    61.0000   115.0000    54.0000 
    118. 

  118.  54 4021      4335     4105.5  wm-rh-pericalcarine               89.3612    11.7686    55.0000   117.0000    62.0000 
    119. 

  119.  55 4022      7558     7623.0  wm-rh-postcentral                 89.2051    11.8163    59.0000   119.0000    60.0000 
    120. 

  120.  56 4023      4951     4903.8  wm-rh-posteriorcingulate         100.7463    10.6709    46.0000   119.0000    73.0000 
    121. 

  121.  57 4024     13521    13578.4  wm-rh-precentral                  92.6886    10.1009    61.0000   116.0000    55.0000 
    122. 

  122.  58 4025      9748     9690.7  wm-rh-precuneus                   96.2630    11.3703    55.0000   118.0000    63.0000 
    123. 

  123.  59 4026      1998     1962.6  wm-rh-rostralanteriorcingulate    97.2472    13.8645    47.0000   126.0000    79.0000 
    124. 

  124.  60 4027     14225    14323.4  wm-rh-rostralmiddlefrontal        94.8193    12.2657    59.0000   123.0000    64.0000 
    125. 

  125.  61 4028     20233    20119.5  wm-rh-superiorfrontal             92.8874    11.6401    56.0000   115.0000    59.0000 
    126. 

  126.  62 4029     13574    13640.9  wm-rh-superiorparietal            93.5333    11.9325    57.0000   117.0000    60.0000 
    127. 

  127.  63 4030      7772     8028.7  wm-rh-superiortemporal            87.7684    11.4505    53.0000   113.0000    60.0000 
    128. 

  128.  64 4031     10778    10836.8  wm-rh-supramarginal               94.9432    12.1209    57.0000   117.0000    60.0000 
    129. 

  129.  65 4032       356      364.0  wm-rh-frontalpole                 88.6854    11.9707    60.0000   119.0000    59.0000 
    130. 

  130.  66 4033      1122     1133.2  wm-rh-temporalpole                72.3467     9.0335    53.0000    96.0000    43.0000 
    131. 

  131.  67 4034       420      419.5  wm-rh-transversetemporal          86.3643     9.3274    68.0000   106.0000    38.0000 
    132. 

  132.  68 4035      9307     9274.1  wm-rh-insula                      89.6282    12.3999    40.0000   114.0000    74.0000 
    133. 

  133.  69 5001     38723    38547.4  Left-UnsegmentedWhiteMatter       99.5862    11.8663     8.0000   122.0000   114.0000 
    134. 

  134.  70 5002     36067    35912.2  Right-UnsegmentedWhiteMatter      97.7229    10.9335     9.0000   121.0000   112.0000 
    135.