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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050745
- # sysname Linux
- # hostname tars-614
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050745
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1185574.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1176511.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1176280.304910, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 7012.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 273955.814726, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 278148.488090, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 552104.302816, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 216064.269936, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216545.732157, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432610.002093, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 61255.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 717995.302816, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1054463.304910, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1047451.304910, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1046080.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1608192.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.814604, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.104984, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 31, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 37, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 68, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1455399.075158, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 03:35:40
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 17:21:38
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 17:21:38
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3018 3399.8 Left-Lateral-Ventricle 22.5557 15.8715 0.0000 78.0000 78.0000
- 2 5 392 442.5 Left-Inf-Lat-Vent 33.9133 14.0850 3.0000 70.0000 67.0000
- 3 7 12973 13455.6 Left-Cerebellum-White-Matter 80.9689 8.1284 20.0000 106.0000 86.0000
- 4 8 53114 53462.0 Left-Cerebellum-Cortex 48.0568 10.7449 1.0000 92.0000 91.0000
- 5 10 6856 6516.5 Left-Thalamus-Proper 77.0287 11.1112 27.0000 106.0000 79.0000
- 6 11 4082 3972.2 Left-Caudate 64.4030 8.6616 35.0000 99.0000 64.0000
- 7 12 6168 6101.3 Left-Putamen 72.0764 6.8252 34.0000 100.0000 66.0000
- 8 13 1932 1764.4 Left-Pallidum 86.6693 6.6637 35.0000 106.0000 71.0000
- 9 14 587 695.4 3rd-Ventricle 33.6354 13.1965 0.0000 72.0000 72.0000
- 10 15 963 1083.6 4th-Ventricle 22.0665 13.3397 0.0000 65.0000 65.0000
- 11 16 20465 20687.0 Brain-Stem 80.3757 10.2756 21.0000 113.0000 92.0000
- 12 17 4396 4236.2 Left-Hippocampus 53.7809 9.8228 6.0000 101.0000 95.0000
- 13 18 2104 2019.9 Left-Amygdala 55.3584 8.0054 17.0000 92.0000 75.0000
- 14 24 501 546.7 CSF 30.0000 12.3460 1.0000 57.0000 56.0000
- 15 26 923 943.8 Left-Accumbens-area 62.0325 5.5020 38.0000 79.0000 41.0000
- 16 28 4034 3885.2 Left-VentralDC 85.2541 11.8572 41.0000 119.0000 78.0000
- 17 30 23 39.5 Left-vessel 52.3043 8.1097 39.0000 71.0000 32.0000
- 18 31 504 444.1 Left-choroid-plexus 49.2083 14.7199 14.0000 105.0000 91.0000
- 19 43 2446 2755.4 Right-Lateral-Ventricle 24.8352 16.2097 0.0000 79.0000 79.0000
- 20 44 153 210.2 Right-Inf-Lat-Vent 37.4771 10.4517 9.0000 64.0000 55.0000
- 21 46 12661 13153.8 Right-Cerebellum-White-Matter 80.6990 7.7575 26.0000 105.0000 79.0000
- 22 47 51143 51410.6 Right-Cerebellum-Cortex 47.6303 10.5944 0.0000 92.0000 92.0000
- 23 49 6914 6582.0 Right-Thalamus-Proper 77.1552 10.7596 25.0000 107.0000 82.0000
- 24 50 4400 4317.3 Right-Caudate 65.4118 8.5952 28.0000 93.0000 65.0000
- 25 51 6346 6247.5 Right-Putamen 70.9844 7.0063 38.0000 95.0000 57.0000
- 26 52 1788 1638.4 Right-Pallidum 85.6773 6.8090 28.0000 101.0000 73.0000
- 27 53 4564 4475.2 Right-Hippocampus 55.2537 9.0301 23.0000 99.0000 76.0000
- 28 54 2081 2029.4 Right-Amygdala 53.8270 8.1507 16.0000 81.0000 65.0000
- 29 58 826 789.5 Right-Accumbens-area 61.1525 6.5337 37.0000 86.0000 49.0000
- 30 60 3914 3659.0 Right-VentralDC 83.1413 13.0210 29.0000 121.0000 92.0000
- 31 62 18 29.6 Right-vessel 54.0556 7.5885 40.0000 65.0000 25.0000
- 32 63 544 501.5 Right-choroid-plexus 47.1985 14.4735 11.0000 81.0000 70.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1757 1532.5 WM-hypointensities 67.8122 13.5083 20.0000 110.0000 90.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 163 173.8 Optic-Chiasm 70.0429 19.3962 19.0000 110.0000 91.0000
- 41 251 867 819.0 CC_Posterior 101.4325 16.3589 27.0000 120.0000 93.0000
- 42 252 448 393.5 CC_Mid_Posterior 94.2701 19.6165 23.0000 118.0000 95.0000
- 43 253 536 489.1 CC_Central 95.4086 18.4776 33.0000 120.0000 87.0000
- 44 254 488 431.1 CC_Mid_Anterior 97.4119 18.9532 40.0000 121.0000 81.0000
- 45 255 759 716.2 CC_Anterior 104.3478 17.0199 18.0000 126.0000 108.0000
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