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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050731 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-903
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050731
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 34459.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 267176.379921, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 269870.552303, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 537046.932224, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1729586.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1795480.855183, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 02:22:42 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 17:12:15 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 17:12:15 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3421     3481.0  wm-lh-bankssts                    99.4499     8.4233    73.0000   120.0000    47.0000 
    66. 

  66.   2 3002      3068     3049.4  wm-lh-caudalanteriorcingulate    104.4306     9.3205    62.0000   118.0000    56.0000 
    67. 

  67.   3 3003      7254     7157.8  wm-lh-caudalmiddlefrontal         97.9731    10.0576    63.0000   116.0000    53.0000 
    68. 

  68.   4 3005      2478     2487.7  wm-lh-cuneus                      92.0129    10.4322    60.0000   110.0000    50.0000 
    69. 

  69.   5 3006      1098     1159.7  wm-lh-entorhinal                  82.5510     8.9036    62.0000   100.0000    38.0000 
    70. 

  70.   6 3007      7221     7183.2  wm-lh-fusiform                    87.8669     9.8481    28.0000   105.0000    77.0000 
    71. 

  71.   7 3008     10058    10176.4  wm-lh-inferiorparietal           101.6985     9.5998    58.0000   122.0000    64.0000 
    72. 

  72.   8 3009      8258     8354.0  wm-lh-inferiortemporal            89.5670    10.5190    57.0000   108.0000    51.0000 
    73. 

  73.   9 3010      4212     4291.5  wm-lh-isthmuscingulate           100.9133     9.6518    31.0000   119.0000    88.0000 
    74. 

  74.  10 3011     12041    12194.4  wm-lh-lateraloccipital            92.1041    11.5925    51.0000   120.0000    69.0000 
    75. 

  75.  11 3012      7236     7209.3  wm-lh-lateralorbitofrontal        95.2869    10.6914    61.0000   113.0000    52.0000 
    76. 

  76.  12 3013      4931     4918.3  wm-lh-lingual                     85.3551    10.6621    17.0000   106.0000    89.0000 
    77. 

  77.  13 3014      4768     4791.9  wm-lh-medialorbitofrontal         94.9128    12.0190    42.0000   138.0000    96.0000 
    78. 

  78.  14 3015      7679     7948.2  wm-lh-middletemporal              92.8920    10.4477    59.0000   113.0000    54.0000 
    79. 

  79.  15 3016      1320     1410.8  wm-lh-parahippocampal             84.3826     8.6997    60.0000   104.0000    44.0000 
    80. 

  80.  16 3017      4885     4804.1  wm-lh-paracentral                 92.4461     9.9132    63.0000   112.0000    49.0000 
    81. 

  81.  17 3018      3800     3823.7  wm-lh-parsopercularis             94.7179    10.5112    61.0000   111.0000    50.0000 
    82. 

  82.  18 3019      1115     1149.2  wm-lh-parsorbitalis               89.6350     9.8430    65.0000   108.0000    43.0000 
    83. 

  83.  19 3020      4017     4029.7  wm-lh-parstriangularis            92.7057    10.0398    63.0000   109.0000    46.0000 
    84. 

  84.  20 3021      3497     3172.3  wm-lh-pericalcarine               83.2768    14.8404     9.0000   109.0000   100.0000 
    85. 

  85.  21 3022      7999     8062.3  wm-lh-postcentral                 91.5342    10.2455    62.0000   113.0000    51.0000 
    86. 

  86.  22 3023      5207     5142.8  wm-lh-posteriorcingulate         100.4723    10.2066    35.0000   117.0000    82.0000 
    87. 

  87.  23 3024     14021    13887.7  wm-lh-precentral                  94.7360     9.5034    62.0000   112.0000    50.0000 
    88. 

  88.  24 3025     11032    10933.1  wm-lh-precuneus                   97.3755    10.5079    38.0000   114.0000    76.0000 
    89. 

  89.  25 3026      3215     3093.4  wm-lh-rostralanteriorcingulate    95.4087    18.3753    21.0000   152.0000   131.0000 
    90. 

  90.  26 3027     15547    15408.7  wm-lh-rostralmiddlefrontal        95.9445    11.1494    60.0000   117.0000    57.0000 
    91. 

  91.  27 3028     19987    19957.7  wm-lh-superiorfrontal             95.4761    10.8810    61.0000   116.0000    55.0000 
    92. 

  92.  28 3029     15989    16029.4  wm-lh-superiorparietal            97.1711    10.4752    65.0000   117.0000    52.0000 
    93. 

  93.  29 3030     10000    10288.2  wm-lh-superiortemporal            94.4440    10.2424    61.0000   118.0000    57.0000 
    94. 

  94.  30 3031     10604    10645.6  wm-lh-supramarginal               98.9120    10.5144    66.0000   118.0000    52.0000 
    95. 

  95.  31 3032       302      315.5  wm-lh-frontalpole                 86.3245    10.0073    64.0000   109.0000    45.0000 
    96. 

  96.  32 3033       619      646.2  wm-lh-temporalpole                77.2520     8.7521    55.0000    98.0000    43.0000 
    97. 

  97.  33 3034       875      852.0  wm-lh-transversetemporal          92.8800     8.2132    73.0000   107.0000    34.0000 
    98. 

  98.  34 3035     11349    11235.0  wm-lh-insula                      93.1396    11.3525    53.0000   115.0000    62.0000 
    99. 

  99.  35 4001      2550     2535.9  wm-rh-bankssts                    95.7447     8.9064    61.0000   108.0000    47.0000 
    100. 

  100.  36 4002      2834     2852.4  wm-rh-caudalanteriorcingulate    100.4661     9.4604    65.0000   121.0000    56.0000 
    101. 

  101.  37 4003      5835     5821.7  wm-rh-caudalmiddlefrontal         94.3851    10.0584    59.0000   109.0000    50.0000 
    102. 

  102.  38 4005      2992     3037.8  wm-rh-cuneus                      93.1190    11.8172    34.0000   116.0000    82.0000 
    103. 

  103.  39 4006       703      753.9  wm-rh-entorhinal                  78.9075     8.3621    59.0000    99.0000    40.0000 
    104. 

  104.  40 4007      7453     7443.5  wm-rh-fusiform                    91.0551    10.0557    14.0000   115.0000   101.0000 
    105. 

  105.  41 4008     13538    13637.2  wm-rh-inferiorparietal            95.8551    10.6829    59.0000   115.0000    56.0000 
    106. 

  106.  42 4009      7138     7338.1  wm-rh-inferiortemporal            88.1924    10.9985    60.0000   115.0000    55.0000 
    107. 

  107.  43 4010      3754     3822.3  wm-rh-isthmuscingulate            99.4936    10.4192    10.0000   117.0000   107.0000 
    108. 

  108.  44 4011     16234    16355.8  wm-rh-lateraloccipital            91.0638    11.7374    50.0000   114.0000    64.0000 
    109. 

  109.  45 4012      7861     7729.5  wm-rh-lateralorbitofrontal        90.6219    12.2499    27.0000   111.0000    84.0000 
    110. 

  110.  46 4013      5416     5451.1  wm-rh-lingual                     87.0764    11.6400    25.0000   110.0000    85.0000 
    111. 

  111.  47 4014      4208     4161.6  wm-rh-medialorbitofrontal         90.6592    12.3930    28.0000   113.0000    85.0000 
    112. 

  112.  48 4015      7371     7555.1  wm-rh-middletemporal              89.3129    10.7296    59.0000   110.0000    51.0000 
    113. 

  113.  49 4016      2015     2024.5  wm-rh-parahippocampal             89.1032    11.5124    48.0000   110.0000    62.0000 
    114. 

  114.  50 4017      6377     6310.7  wm-rh-paracentral                 93.3947     9.5093    59.0000   113.0000    54.0000 
    115. 

  115.  51 4018      3690     3714.9  wm-rh-parsopercularis             95.5859     9.6077    65.0000   110.0000    45.0000 
    116. 

  116.  52 4019      1339     1354.6  wm-rh-parsorbitalis               88.6453    11.1307    61.0000   110.0000    49.0000 
    117. 

  117.  53 4020      4071     4089.5  wm-rh-parstriangularis            94.2658    10.5121    65.0000   111.0000    46.0000 
    118. 

  118.  54 4021      3474     3217.8  wm-rh-pericalcarine               84.2375    12.6994    15.0000   111.0000    96.0000 
    119. 

  119.  55 4022      7668     7727.5  wm-rh-postcentral                 89.3086    10.5730    61.0000   113.0000    52.0000 
    120. 

  120.  56 4023      4709     4704.0  wm-rh-posteriorcingulate          99.1034     9.7887    45.0000   117.0000    72.0000 
    121. 

  121.  57 4024     16150    16108.9  wm-rh-precentral                  93.2357     9.0753    61.0000   112.0000    51.0000 
    122. 

  122.  58 4025     11520    11467.3  wm-rh-precuneus                   97.9549    10.3761     7.0000   115.0000   108.0000 
    123. 

  123.  59 4026      2255     2181.7  wm-rh-rostralanteriorcingulate    97.7973    12.2465    39.0000   119.0000    80.0000 
    124. 

  124.  60 4027     14899    14853.1  wm-rh-rostralmiddlefrontal        95.4855    10.5948    63.0000   118.0000    55.0000 
    125. 

  125.  61 4028     21249    21240.3  wm-rh-superiorfrontal             92.2912    10.0926    59.0000   115.0000    56.0000 
    126. 

  126.  62 4029     13769    13768.8  wm-rh-superiorparietal            95.4347    10.9087    62.0000   115.0000    53.0000 
    127. 

  127.  63 4030      8096     8430.3  wm-rh-superiortemporal            92.1114     9.4396    60.0000   110.0000    50.0000 
    128. 

  128.  64 4031      9533     9530.1  wm-rh-supramarginal               96.0257    10.1988    61.0000   115.0000    54.0000 
    129. 

  129.  65 4032       316      342.4  wm-rh-frontalpole                 90.6487    10.2105    67.0000   115.0000    48.0000 
    130. 

  130.  66 4033       657      660.1  wm-rh-temporalpole                77.9056     8.9299    58.0000    97.0000    39.0000 
    131. 

  131.  67 4034       599      621.6  wm-rh-transversetemporal          91.1252     8.2366    68.0000   106.0000    38.0000 
    132. 

  132.  68 4035     10570    10398.8  wm-rh-insula                      91.1952    11.4741    55.0000   112.0000    57.0000 
    133. 

  133.  69 5001     36677    36507.2  Left-UnsegmentedWhiteMatter       99.9304    12.2859    18.0000   119.0000   101.0000 
    134. 

  134.  70 5002     36561    36450.0  Right-UnsegmentedWhiteMatter      98.1430    11.5392     6.0000   117.0000   111.0000 
    135.