| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543544545546547548549550551552553554555556557558559560561562563564565566567568569570571572573574575576577578579580581582583584585586587588589590591592593594595596597598599600601602603604605606607608609610611612613614615616617618619620621622623624625626627628629630631632633634635636637638639640641642643644645646647648649650651652653654655656657658659660661662663664665666667668669670671672673674675676677678679680681682683684685686687688689690691692693694695696697698699700701702703704705706707708709710711712713714715716717718719720721722723724725726727728729730731732733734735736737738739740741742743744745746747748749750751752753754755756757758759760761762763764765766767768769770771772773774775776777778779780781782783784785786787788789790791792793794795796797798799800801802803804805806807808809810811812813814815816817818819820821822823824825826827828829830831832833834835836837838839840841842843844845846847848849850851852853854855856857858859860861862863864865866867868869870871872873874875876877878879880881882883884885886887888889890891892893894895896897898899900901902903904905906907908909910911912913914915916917918919920921922923924925926927928929930931932933934935936937938939940941942943944945946947948949950951952953954955956957958959960961962963964965966967968969970971972973974975976977978979980981982983984985986987988989990991992993994995996997998999100010011002100310041005100610071008100910101011101210131014101510161017101810191020102110221023102410251026102710281029103010311032103310341035103610371038103910401041104210431044104510461047104810491050105110521053105410551056105710581059106010611062106310641065106610671068106910701071107210731074107510761077107810791080108110821083108410851086108710881089109010911092109310941095109610971098109911001101110211031104110511061107110811091110111111121113111411151116111711181119112011211122112311241125112611271128112911301131113211331134113511361137113811391140114111421143114411451146114711481149115011511152115311541155115611571158115911601161116211631164116511661167116811691170117111721173117411751176117711781179118011811182118311841185118611871188118911901191119211931194119511961197119811991200120112021203120412051206120712081209121012111212121312141215121612171218121912201221122212231224122512261227122812291230123112321233123412351236123712381239124012411242124312441245124612471248124912501251125212531254125512561257125812591260126112621263126412651266126712681269127012711272127312741275127612771278127912801281128212831284128512861287128812891290129112921293129412951296129712981299130013011302130313041305130613071308130913101311131213131314131513161317131813191320132113221323132413251326132713281329133013311332133313341335133613371338133913401341134213431344134513461347134813491350135113521353135413551356135713581359136013611362136313641365136613671368136913701371137213731374137513761377137813791380138113821383138413851386138713881389139013911392139313941395139613971398139914001401140214031404140514061407140814091410141114121413141414151416141714181419142014211422142314241425142614271428142914301431143214331434143514361437143814391440144114421443144414451446144714481449145014511452145314541455145614571458145914601461146214631464146514661467146814691470147114721473147414751476147714781479148014811482148314841485148614871488148914901491149214931494149514961497149814991500150115021503150415051506150715081509151015111512151315141515151615171518151915201521152215231524152515261527152815291530153115321533153415351536153715381539154015411542154315441545154615471548154915501551155215531554155515561557155815591560156115621563156415651566156715681569157015711572157315741575157615771578157915801581158215831584158515861587158815891590159115921593159415951596159715981599160016011602160316041605160616071608160916101611161216131614161516161617161816191620162116221623162416251626162716281629163016311632163316341635163616371638163916401641164216431644164516461647164816491650165116521653165416551656165716581659166016611662166316641665166616671668166916701671167216731674167516761677167816791680168116821683168416851686168716881689169016911692169316941695169616971698169917001701170217031704170517061707170817091710171117121713171417151716171717181719172017211722172317241725172617271728172917301731173217331734173517361737173817391740174117421743174417451746174717481749175017511752175317541755175617571758175917601761176217631764176517661767176817691770177117721773177417751776177717781779178017811782178317841785178617871788178917901791179217931794179517961797179817991800180118021803180418051806180718081809181018111812181318141815181618171818181918201821182218231824182518261827182818291830183118321833183418351836183718381839184018411842184318441845184618471848184918501851185218531854185518561857185818591860186118621863186418651866186718681869187018711872187318741875187618771878187918801881188218831884188518861887188818891890189118921893189418951896189718981899190019011902190319041905190619071908190919101911191219131914191519161917191819191920192119221923192419251926192719281929193019311932193319341935193619371938193919401941194219431944194519461947194819491950195119521953195419551956195719581959196019611962196319641965196619671968196919701971197219731974197519761977197819791980198119821983198419851986198719881989199019911992199319941995199619971998199920002001200220032004200520062007200820092010201120122013201420152016201720182019202020212022202320242025202620272028202920302031203220332034203520362037203820392040204120422043204420452046204720482049205020512052205320542055205620572058205920602061206220632064206520662067206820692070207120722073207420752076207720782079208020812082208320842085208620872088208920902091209220932094209520962097209820992100210121022103210421052106210721082109211021112112211321142115211621172118211921202121212221232124212521262127212821292130213121322133213421352136213721382139214021412142214321442145214621472148214921502151215221532154215521562157215821592160216121622163216421652166216721682169217021712172217321742175217621772178217921802181218221832184218521862187218821892190219121922193219421952196219721982199220022012202220322042205220622072208220922102211221222132214221522162217221822192220222122222223222422252226222722282229223022312232223322342235223622372238223922402241224222432244224522462247224822492250225122522253225422552256225722582259226022612262226322642265226622672268226922702271227222732274227522762277227822792280228122822283228422852286228722882289229022912292229322942295229622972298229923002301230223032304230523062307230823092310231123122313231423152316231723182319232023212322232323242325232623272328232923302331233223332334233523362337233823392340234123422343234423452346234723482349235023512352235323542355235623572358235923602361236223632364236523662367236823692370237123722373237423752376237723782379238023812382238323842385238623872388238923902391239223932394239523962397239823992400240124022403240424052406240724082409241024112412241324142415241624172418241924202421242224232424242524262427242824292430243124322433243424352436243724382439244024412442244324442445244624472448244924502451245224532454245524562457245824592460246124622463246424652466246724682469247024712472247324742475247624772478247924802481248224832484248524862487248824892490249124922493249424952496249724982499250025012502250325042505250625072508250925102511251225132514251525162517251825192520252125222523252425252526252725282529253025312532253325342535253625372538253925402541254225432544254525462547254825492550255125522553255425552556255725582559256025612562256325642565256625672568256925702571257225732574257525762577257825792580258125822583258425852586258725882589259025912592259325942595259625972598259926002601260226032604260526062607260826092610261126122613261426152616261726182619262026212622262326242625262626272628262926302631263226332634263526362637263826392640264126422643264426452646264726482649265026512652265326542655265626572658265926602661266226632664266526662667266826692670267126722673267426752676267726782679268026812682268326842685268626872688268926902691269226932694269526962697269826992700270127022703270427052706270727082709271027112712271327142715271627172718271927202721272227232724272527262727272827292730273127322733273427352736273727382739274027412742274327442745274627472748274927502751275227532754275527562757275827592760276127622763276427652766276727682769277027712772277327742775277627772778277927802781278227832784278527862787278827892790279127922793279427952796279727982799280028012802280328042805280628072808280928102811281228132814281528162817281828192820282128222823282428252826282728282829283028312832283328342835283628372838283928402841284228432844284528462847284828492850285128522853285428552856285728582859286028612862286328642865286628672868286928702871287228732874287528762877287828792880288128822883288428852886288728882889289028912892289328942895289628972898289929002901290229032904290529062907290829092910291129122913291429152916291729182919292029212922292329242925292629272928292929302931293229332934293529362937293829392940294129422943294429452946294729482949295029512952295329542955295629572958295929602961296229632964296529662967296829692970297129722973297429752976297729782979298029812982298329842985298629872988298929902991299229932994299529962997299829993000300130023003300430053006300730083009301030113012301330143015301630173018301930203021302230233024302530263027302830293030303130323033303430353036303730383039304030413042304330443045304630473048304930503051305230533054305530563057305830593060306130623063306430653066306730683069307030713072307330743075307630773078307930803081308230833084308530863087308830893090309130923093309430953096309730983099310031013102310331043105310631073108310931103111311231133114311531163117311831193120312131223123312431253126312731283129313031313132313331343135313631373138313931403141314231433144314531463147314831493150315131523153315431553156315731583159316031613162316331643165316631673168316931703171317231733174317531763177317831793180318131823183318431853186318731883189319031913192319331943195319631973198319932003201320232033204320532063207320832093210321132123213321432153216321732183219322032213222322332243225322632273228322932303231323232333234323532363237323832393240324132423243324432453246324732483249325032513252325332543255325632573258325932603261326232633264326532663267326832693270327132723273327432753276327732783279328032813282328332843285328632873288328932903291329232933294329532963297329832993300330133023303330433053306330733083309331033113312331333143315331633173318331933203321332233233324332533263327332833293330333133323333333433353336333733383339334033413342334333443345334633473348334933503351335233533354335533563357335833593360336133623363336433653366336733683369337033713372337333743375337633773378337933803381338233833384338533863387338833893390339133923393339433953396339733983399340034013402340334043405340634073408340934103411341234133414341534163417341834193420342134223423342434253426342734283429343034313432343334343435343634373438343934403441344234433444344534463447344834493450345134523453345434553456345734583459346034613462346334643465346634673468346934703471347234733474347534763477347834793480348134823483348434853486348734883489349034913492349334943495349634973498349935003501350235033504350535063507350835093510351135123513351435153516351735183519352035213522352335243525352635273528352935303531353235333534353535363537353835393540354135423543354435453546354735483549355035513552355335543555355635573558355935603561356235633564356535663567356835693570357135723573357435753576357735783579358035813582358335843585358635873588358935903591359235933594359535963597359835993600360136023603360436053606360736083609361036113612361336143615361636173618361936203621362236233624362536263627362836293630363136323633363436353636363736383639364036413642364336443645364636473648364936503651365236533654365536563657365836593660366136623663366436653666366736683669367036713672367336743675367636773678367936803681368236833684368536863687368836893690369136923693369436953696369736983699370037013702370337043705370637073708370937103711371237133714371537163717371837193720372137223723372437253726372737283729373037313732373337343735373637373738373937403741374237433744374537463747374837493750375137523753375437553756375737583759376037613762376337643765376637673768376937703771377237733774377537763777377837793780378137823783378437853786378737883789379037913792379337943795379637973798379938003801380238033804380538063807380838093810381138123813381438153816381738183819382038213822382338243825382638273828382938303831383238333834383538363837383838393840384138423843384438453846384738483849385038513852385338543855385638573858385938603861386238633864386538663867386838693870387138723873387438753876387738783879388038813882388338843885388638873888388938903891389238933894389538963897389838993900390139023903390439053906390739083909391039113912391339143915391639173918391939203921392239233924392539263927392839293930393139323933393439353936393739383939394039413942394339443945394639473948394939503951395239533954395539563957395839593960396139623963396439653966396739683969397039713972397339743975397639773978397939803981398239833984398539863987398839893990399139923993399439953996399739983999400040014002400340044005400640074008400940104011401240134014401540164017401840194020402140224023402440254026402740284029403040314032403340344035403640374038403940404041404240434044404540464047404840494050405140524053405440554056405740584059406040614062406340644065406640674068406940704071407240734074407540764077407840794080408140824083408440854086408740884089409040914092409340944095409640974098409941004101410241034104410541064107410841094110411141124113411441154116411741184119412041214122412341244125412641274128412941304131413241334134413541364137413841394140414141424143414441454146414741484149415041514152415341544155415641574158415941604161416241634164416541664167416841694170417141724173417441754176417741784179418041814182418341844185418641874188418941904191419241934194419541964197419841994200420142024203420442054206420742084209421042114212421342144215421642174218421942204221422242234224422542264227422842294230423142324233423442354236423742384239424042414242424342444245424642474248424942504251425242534254425542564257425842594260426142624263426442654266426742684269427042714272427342744275427642774278427942804281428242834284428542864287428842894290429142924293429442954296429742984299430043014302430343044305430643074308430943104311431243134314431543164317431843194320432143224323432443254326432743284329433043314332433343344335433643374338433943404341434243434344434543464347434843494350435143524353435443554356435743584359436043614362436343644365436643674368436943704371437243734374437543764377437843794380438143824383438443854386438743884389439043914392439343944395439643974398439944004401440244034404440544064407440844094410441144124413441444154416441744184419442044214422442344244425442644274428442944304431443244334434443544364437443844394440444144424443444444454446444744484449445044514452445344544455445644574458445944604461446244634464446544664467446844694470447144724473447444754476447744784479448044814482448344844485448644874488448944904491449244934494449544964497449844994500450145024503450445054506450745084509451045114512451345144515451645174518451945204521452245234524452545264527452845294530453145324533453445354536453745384539454045414542454345444545454645474548454945504551455245534554455545564557455845594560456145624563456445654566456745684569457045714572457345744575457645774578457945804581458245834584458545864587458845894590459145924593459445954596459745984599460046014602460346044605460646074608460946104611461246134614461546164617461846194620462146224623462446254626462746284629463046314632463346344635463646374638463946404641464246434644464546464647464846494650465146524653465446554656465746584659466046614662466346644665466646674668466946704671467246734674467546764677467846794680468146824683468446854686468746884689469046914692469346944695469646974698469947004701470247034704470547064707470847094710471147124713471447154716471747184719472047214722472347244725472647274728472947304731473247334734473547364737473847394740474147424743474447454746474747484749475047514752475347544755475647574758475947604761476247634764476547664767476847694770477147724773477447754776477747784779478047814782478347844785478647874788478947904791479247934794479547964797479847994800480148024803480448054806480748084809481048114812481348144815481648174818481948204821482248234824482548264827482848294830483148324833483448354836483748384839484048414842484348444845484648474848484948504851485248534854485548564857485848594860486148624863486448654866486748684869487048714872487348744875487648774878487948804881488248834884488548864887488848894890489148924893489448954896489748984899490049014902490349044905490649074908490949104911491249134914491549164917491849194920492149224923492449254926492749284929493049314932493349344935493649374938493949404941494249434944494549464947494849494950495149524953495449554956495749584959496049614962496349644965496649674968496949704971497249734974497549764977497849794980498149824983498449854986498749884989499049914992499349944995499649974998499950005001500250035004500550065007500850095010501150125013501450155016501750185019502050215022502350245025502650275028502950305031503250335034503550365037503850395040504150425043504450455046504750485049505050515052505350545055505650575058505950605061506250635064506550665067506850695070507150725073507450755076507750785079508050815082508350845085508650875088508950905091509250935094509550965097509850995100510151025103510451055106510751085109511051115112511351145115511651175118511951205121512251235124512551265127512851295130513151325133513451355136513751385139514051415142514351445145514651475148514951505151515251535154515551565157515851595160516151625163516451655166516751685169517051715172517351745175517651775178517951805181518251835184518551865187518851895190519151925193519451955196519751985199520052015202520352045205520652075208520952105211521252135214521552165217521852195220522152225223522452255226522752285229523052315232523352345235523652375238523952405241524252435244524552465247524852495250525152525253525452555256525752585259526052615262526352645265526652675268526952705271527252735274527552765277527852795280528152825283528452855286528752885289529052915292529352945295529652975298529953005301530253035304530553065307530853095310531153125313531453155316531753185319532053215322532353245325532653275328532953305331533253335334533553365337533853395340534153425343534453455346534753485349535053515352535353545355535653575358535953605361536253635364536553665367536853695370537153725373537453755376537753785379538053815382538353845385538653875388538953905391539253935394539553965397539853995400540154025403540454055406540754085409541054115412541354145415541654175418541954205421542254235424542554265427542854295430543154325433543454355436543754385439544054415442544354445445544654475448544954505451545254535454545554565457545854595460546154625463546454655466546754685469547054715472547354745475547654775478547954805481548254835484548554865487548854895490549154925493549454955496549754985499550055015502550355045505550655075508550955105511551255135514551555165517551855195520552155225523552455255526552755285529553055315532553355345535553655375538553955405541554255435544554555465547554855495550555155525553555455555556555755585559556055615562556355645565556655675568556955705571557255735574557555765577557855795580558155825583558455855586558755885589559055915592559355945595559655975598559956005601560256035604560556065607560856095610561156125613561456155616561756185619562056215622562356245625562656275628562956305631563256335634563556365637563856395640564156425643564456455646564756485649565056515652565356545655565656575658565956605661566256635664566556665667566856695670567156725673567456755676567756785679568056815682568356845685568656875688568956905691569256935694569556965697569856995700570157025703570457055706570757085709571057115712571357145715571657175718571957205721572257235724572557265727572857295730573157325733573457355736573757385739574057415742574357445745574657475748574957505751575257535754575557565757575857595760576157625763576457655766576757685769577057715772577357745775577657775778577957805781578257835784578557865787578857895790579157925793579457955796579757985799580058015802580358045805580658075808580958105811581258135814581558165817581858195820582158225823582458255826582758285829583058315832583358345835583658375838583958405841584258435844584558465847584858495850585158525853585458555856585758585859586058615862586358645865586658675868586958705871587258735874587558765877587858795880588158825883588458855886588758885889589058915892589358945895589658975898589959005901590259035904590559065907590859095910591159125913591459155916591759185919592059215922592359245925592659275928592959305931593259335934593559365937593859395940594159425943594459455946594759485949595059515952595359545955595659575958595959605961596259635964596559665967596859695970597159725973597459755976597759785979598059815982598359845985598659875988598959905991599259935994599559965997599859996000600160026003600460056006600760086009601060116012601360146015601660176018601960206021602260236024602560266027602860296030603160326033603460356036603760386039604060416042604360446045604660476048604960506051605260536054605560566057605860596060606160626063606460656066606760686069607060716072607360746075607660776078607960806081608260836084608560866087608860896090609160926093609460956096609760986099610061016102610361046105610661076108610961106111611261136114611561166117611861196120612161226123612461256126612761286129613061316132613361346135613661376138613961406141614261436144614561466147614861496150615161526153615461556156615761586159616061616162616361646165616661676168616961706171617261736174617561766177617861796180618161826183618461856186618761886189619061916192619361946195619661976198619962006201620262036204620562066207620862096210621162126213621462156216621762186219622062216222622362246225622662276228622962306231623262336234623562366237623862396240624162426243624462456246624762486249625062516252625362546255625662576258625962606261626262636264626562666267626862696270627162726273627462756276627762786279628062816282628362846285628662876288628962906291629262936294629562966297629862996300630163026303630463056306630763086309631063116312631363146315631663176318631963206321632263236324632563266327632863296330633163326333633463356336633763386339634063416342634363446345634663476348634963506351635263536354635563566357635863596360636163626363636463656366636763686369637063716372637363746375637663776378637963806381638263836384638563866387638863896390639163926393639463956396639763986399640064016402640364046405640664076408640964106411641264136414641564166417641864196420642164226423642464256426642764286429643064316432643364346435643664376438643964406441644264436444644564466447644864496450645164526453645464556456645764586459646064616462646364646465646664676468646964706471647264736474647564766477647864796480648164826483648464856486648764886489649064916492649364946495649664976498649965006501650265036504650565066507650865096510651165126513651465156516651765186519652065216522652365246525652665276528652965306531653265336534653565366537653865396540654165426543654465456546654765486549655065516552655365546555655665576558655965606561656265636564656565666567656865696570657165726573657465756576657765786579658065816582658365846585658665876588658965906591659265936594659565966597659865996600660166026603660466056606660766086609661066116612661366146615661666176618661966206621662266236624662566266627662866296630663166326633663466356636663766386639664066416642664366446645664666476648664966506651665266536654665566566657665866596660666166626663666466656666666766686669667066716672667366746675667666776678667966806681668266836684668566866687668866896690669166926693669466956696669766986699670067016702670367046705670667076708670967106711671267136714671567166717671867196720672167226723672467256726672767286729673067316732673367346735673667376738673967406741674267436744674567466747674867496750675167526753675467556756675767586759676067616762676367646765676667676768676967706771677267736774677567766777677867796780678167826783678467856786678767886789679067916792679367946795679667976798679968006801680268036804680568066807680868096810681168126813681468156816681768186819682068216822682368246825682668276828682968306831683268336834683568366837683868396840684168426843684468456846684768486849685068516852685368546855685668576858685968606861686268636864686568666867686868696870687168726873687468756876687768786879688068816882688368846885688668876888688968906891689268936894689568966897689868996900690169026903690469056906690769086909691069116912691369146915691669176918691969206921692269236924692569266927692869296930693169326933693469356936693769386939694069416942694369446945694669476948694969506951695269536954695569566957695869596960696169626963696469656966696769686969697069716972697369746975697669776978697969806981698269836984698569866987698869896990699169926993699469956996699769986999700070017002700370047005700670077008700970107011701270137014701570167017701870197020702170227023702470257026702770287029703070317032703370347035703670377038703970407041704270437044704570467047704870497050705170527053705470557056705770587059706070617062706370647065706670677068706970707071707270737074707570767077707870797080708170827083708470857086708770887089709070917092709370947095709670977098709971007101710271037104710571067107710871097110711171127113711471157116711771187119712071217122712371247125712671277128712971307131713271337134713571367137713871397140714171427143714471457146714771487149715071517152715371547155715671577158715971607161716271637164716571667167716871697170717171727173717471757176717771787179718071817182718371847185718671877188718971907191719271937194719571967197719871997200720172027203720472057206720772087209721072117212721372147215721672177218721972207221722272237224722572267227722872297230723172327233723472357236723772387239724072417242724372447245724672477248724972507251725272537254725572567257725872597260726172627263726472657266726772687269727072717272727372747275727672777278727972807281728272837284728572867287728872897290729172927293729472957296729772987299730073017302730373047305730673077308730973107311731273137314731573167317731873197320732173227323732473257326732773287329733073317332733373347335733673377338733973407341734273437344734573467347734873497350735173527353735473557356735773587359736073617362736373647365736673677368736973707371737273737374737573767377737873797380738173827383738473857386738773887389739073917392739373947395739673977398739974007401740274037404740574067407740874097410741174127413741474157416741774187419742074217422742374247425742674277428742974307431743274337434743574367437743874397440744174427443744474457446744774487449745074517452745374547455745674577458745974607461746274637464746574667467746874697470747174727473747474757476747774787479748074817482748374847485748674877488748974907491749274937494749574967497749874997500750175027503750475057506750775087509751075117512751375147515751675177518751975207521752275237524752575267527752875297530753175327533753475357536753775387539754075417542754375447545754675477548754975507551755275537554755575567557755875597560756175627563756475657566756775687569757075717572757375747575757675777578757975807581758275837584758575867587758875897590759175927593759475957596759775987599760076017602760376047605760676077608760976107611761276137614761576167617761876197620762176227623762476257626762776287629763076317632763376347635763676377638763976407641764276437644764576467647764876497650765176527653765476557656765776587659766076617662766376647665766676677668766976707671767276737674767576767677767876797680768176827683768476857686768776887689769076917692769376947695769676977698769977007701770277037704770577067707770877097710771177127713771477157716771777187719772077217722772377247725772677277728772977307731773277337734773577367737773877397740774177427743774477457746774777487749775077517752775377547755775677577758775977607761776277637764776577667767776877697770777177727773777477757776777777787779778077817782778377847785778677877788778977907791779277937794779577967797779877997800780178027803780478057806780778087809781078117812781378147815781678177818781978207821782278237824782578267827782878297830783178327833783478357836783778387839784078417842784378447845784678477848784978507851785278537854785578567857785878597860786178627863786478657866786778687869787078717872787378747875787678777878787978807881788278837884788578867887788878897890789178927893789478957896789778987899790079017902790379047905790679077908790979107911791279137914791579167917791879197920792179227923792479257926792779287929793079317932793379347935793679377938793979407941794279437944794579467947794879497950795179527953795479557956795779587959796079617962796379647965796679677968796979707971797279737974797579767977797879797980798179827983798479857986798779887989799079917992799379947995799679977998799980008001800280038004800580068007800880098010801180128013801480158016801780188019802080218022802380248025802680278028802980308031803280338034803580368037803880398040804180428043804480458046804780488049805080518052805380548055805680578058805980608061806280638064806580668067806880698070807180728073807480758076807780788079808080818082808380848085808680878088808980908091809280938094809580968097809880998100810181028103810481058106810781088109811081118112811381148115811681178118811981208121812281238124812581268127812881298130813181328133813481358136813781388139814081418142814381448145814681478148814981508151815281538154815581568157815881598160816181628163816481658166816781688169817081718172817381748175817681778178817981808181818281838184818581868187818881898190819181928193819481958196819781988199820082018202820382048205820682078208820982108211821282138214821582168217821882198220822182228223822482258226822782288229823082318232823382348235823682378238823982408241824282438244824582468247824882498250825182528253825482558256825782588259826082618262826382648265826682678268826982708271827282738274827582768277827882798280828182828283828482858286828782888289829082918292829382948295829682978298829983008301830283038304830583068307830883098310831183128313831483158316831783188319832083218322832383248325832683278328832983308331833283338334833583368337833883398340834183428343834483458346834783488349835083518352835383548355835683578358835983608361836283638364836583668367836883698370837183728373837483758376837783788379838083818382838383848385838683878388838983908391839283938394839583968397839883998400840184028403840484058406840784088409841084118412841384148415841684178418841984208421842284238424842584268427842884298430843184328433843484358436843784388439844084418442844384448445844684478448844984508451845284538454845584568457845884598460846184628463846484658466846784688469847084718472847384748475847684778478847984808481848284838484848584868487848884898490849184928493849484958496849784988499850085018502850385048505850685078508850985108511851285138514851585168517851885198520852185228523852485258526852785288529853085318532853385348535853685378538853985408541854285438544854585468547854885498550855185528553855485558556855785588559856085618562856385648565856685678568856985708571857285738574857585768577857885798580858185828583858485858586858785888589859085918592859385948595859685978598859986008601860286038604860586068607860886098610861186128613861486158616861786188619862086218622862386248625862686278628862986308631863286338634863586368637863886398640864186428643864486458646864786488649865086518652865386548655865686578658865986608661866286638664866586668667866886698670867186728673867486758676867786788679868086818682868386848685868686878688868986908691869286938694869586968697869886998700870187028703870487058706870787088709871087118712871387148715871687178718871987208721872287238724872587268727872887298730873187328733873487358736873787388739874087418742874387448745874687478748874987508751875287538754875587568757875887598760876187628763876487658766876787688769877087718772877387748775877687778778877987808781878287838784878587868787878887898790879187928793879487958796879787988799880088018802880388048805880688078808880988108811881288138814881588168817881888198820882188228823882488258826882788288829883088318832883388348835883688378838883988408841884288438844884588468847884888498850885188528853885488558856885788588859886088618862886388648865886688678868886988708871887288738874887588768877887888798880888188828883888488858886888788888889889088918892889388948895889688978898889989008901890289038904890589068907890889098910891189128913891489158916891789188919892089218922892389248925892689278928892989308931893289338934893589368937893889398940894189428943894489458946894789488949895089518952895389548955895689578958895989608961896289638964896589668967896889698970897189728973897489758976897789788979898089818982898389848985898689878988898989908991899289938994899589968997899889999000900190029003900490059006900790089009901090119012901390149015901690179018901990209021902290239024902590269027902890299030903190329033903490359036903790389039904090419042904390449045904690479048904990509051905290539054905590569057905890599060906190629063906490659066906790689069907090719072907390749075907690779078907990809081908290839084908590869087908890899090909190929093909490959096909790989099910091019102910391049105910691079108910991109111911291139114911591169117911891199120912191229123912491259126912791289129913091319132913391349135913691379138913991409141914291439144914591469147914891499150915191529153915491559156915791589159916091619162916391649165916691679168916991709171917291739174917591769177917891799180918191829183918491859186918791889189919091919192919391949195919691979198919992009201920292039204920592069207920892099210921192129213921492159216921792189219922092219222922392249225922692279228922992309231923292339234923592369237923892399240924192429243924492459246924792489249925092519252925392549255925692579258925992609261926292639264926592669267926892699270927192729273927492759276927792789279928092819282928392849285928692879288928992909291929292939294929592969297929892999300930193029303930493059306930793089309931093119312931393149315931693179318931993209321932293239324932593269327932893299330933193329333933493359336933793389339934093419342934393449345934693479348934993509351935293539354935593569357935893599360936193629363936493659366936793689369937093719372937393749375937693779378937993809381938293839384938593869387938893899390939193929393939493959396939793989399940094019402940394049405940694079408940994109411941294139414941594169417941894199420942194229423942494259426942794289429943094319432943394349435943694379438943994409441944294439444944594469447944894499450945194529453945494559456945794589459946094619462946394649465946694679468946994709471947294739474947594769477947894799480948194829483948494859486948794889489949094919492949394949495949694979498949995009501950295039504950595069507950895099510951195129513951495159516951795189519952095219522952395249525952695279528952995309531953295339534953595369537953895399540954195429543954495459546954795489549955095519552955395549555955695579558955995609561956295639564956595669567956895699570957195729573957495759576957795789579958095819582958395849585958695879588958995909591959295939594959595969597959895999600960196029603960496059606960796089609961096119612961396149615961696179618961996209621962296239624962596269627962896299630963196329633963496359636963796389639964096419642964396449645964696479648964996509651965296539654965596569657965896599660966196629663966496659666966796689669967096719672967396749675967696779678967996809681968296839684968596869687968896899690969196929693969496959696969796989699970097019702970397049705970697079708970997109711971297139714971597169717971897199720972197229723972497259726972797289729973097319732973397349735973697379738973997409741974297439744974597469747974897499750975197529753975497559756975797589759976097619762976397649765976697679768976997709771977297739774977597769777977897799780978197829783978497859786978797889789979097919792979397949795979697979798979998009801980298039804980598069807980898099810981198129813981498159816981798189819982098219822982398249825982698279828982998309831983298339834983598369837983898399840984198429843984498459846984798489849985098519852985398549855985698579858985998609861986298639864986598669867986898699870987198729873987498759876987798789879988098819882988398849885988698879888988998909891989298939894989598969897989898999900990199029903990499059906990799089909991099119912991399149915991699179918991999209921992299239924992599269927992899299930993199329933993499359936993799389939994099419942994399449945994699479948994999509951995299539954995599569957995899599960996199629963996499659966996799689969997099719972997399749975997699779978997999809981998299839984998599869987998899899990999199929993999499959996999799989999100001000110002100031000410005100061000710008100091001010011100121001310014100151001610017100181001910020100211002210023100241002510026100271002810029100301003110032100331003410035100361003710038100391004010041100421004310044100451004610047100481004910050100511005210053100541005510056100571005810059100601006110062100631006410065100661006710068100691007010071100721007310074100751007610077100781007910080100811008210083100841008510086100871008810089100901009110092100931009410095100961009710098100991010010101101021010310104101051010610107101081010910110101111011210113101141011510116101171011810119101201012110122101231012410125101261012710128101291013010131101321013310134101351013610137101381013910140101411014210143101441014510146101471014810149101501015110152101531015410155101561015710158101591016010161101621016310164101651016610167101681016910170101711017210173101741017510176101771017810179101801018110182101831018410185101861018710188101891019010191101921019310194101951019610197101981019910200102011020210203102041020510206102071020810209102101021110212102131021410215102161021710218102191022010221102221022310224102251022610227102281022910230102311023210233102341023510236102371023810239102401024110242102431024410245102461024710248102491025010251102521025310254102551025610257102581025910260102611026210263102641026510266102671026810269102701027110272102731027410275102761027710278102791028010281102821028310284102851028610287102881028910290102911029210293102941029510296102971029810299103001030110302103031030410305103061030710308103091031010311103121031310314103151031610317103181031910320103211032210323103241032510326103271032810329103301033110332103331033410335103361033710338103391034010341103421034310344103451034610347103481034910350103511035210353103541035510356103571035810359103601036110362103631036410365103661036710368103691037010371103721037310374103751037610377103781037910380103811038210383103841038510386103871038810389103901039110392103931039410395103961039710398103991040010401104021040310404104051040610407104081040910410104111041210413104141041510416104171041810419104201042110422104231042410425104261042710428104291043010431104321043310434104351043610437104381043910440104411044210443104441044510446104471044810449104501045110452104531045410455104561045710458104591046010461104621046310464104651046610467104681046910470104711047210473104741047510476104771047810479104801048110482104831048410485104861048710488104891049010491104921049310494104951049610497104981049910500105011050210503105041050510506105071050810509105101051110512105131051410515105161051710518105191052010521105221052310524105251052610527105281052910530105311053210533105341053510536105371053810539105401054110542105431054410545105461054710548105491055010551105521055310554105551055610557105581055910560105611056210563105641056510566105671056810569105701057110572105731057410575105761057710578105791058010581105821058310584105851058610587105881058910590105911059210593105941059510596105971059810599106001060110602106031060410605106061060710608106091061010611106121061310614106151061610617106181061910620106211062210623106241062510626 |
- Sat Oct 7 16:42:24 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/recon-all
- -subjid 0050731 -sd fs-6.0.0 -i /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Leuven_2/0050731/session_1/anat_1/mprage.nii.gz -autorecon-all -parallel -openmp 2
- subjid 0050731
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Actual FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- Linux tars-903 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- cputime unlimited
- filesize unlimited
- datasize unlimited
- stacksize 10240 kbytes
- coredumpsize 0 kbytes
- memoryuse 10485760 kbytes
- vmemoryuse unlimited
- descriptors 65536
- memorylocked 64 kbytes
- maxproc 1024
- total used free shared buffers cached
- Mem: 66074808 53267292 12807516 1756876 0 50970156
- -/+ buffers/cache: 2297136 63777672
- Swap: 0 0 0
- ########################################
- program versions used
- $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $
- $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $
- mri_convert.bin -all-info
- ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- FLIRT version 5.5
- $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $
- mri_convert.bin --version
- stable6
- ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
- ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
- ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-14:42:24-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: ntraut Machine: tars-903 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- #######################################
- GCADIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCA RB_all_2016-05-10.vc700.gca
- GCASkull RB_all_withskull_2016-05-10.vc700.gca
- AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
- GCSDIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
- #######################################
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Leuven_2/0050731/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig/001.mgz
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Leuven_2/0050731/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig/001.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Leuven_2/0050731/session_1/anat_1/mprage.nii.gz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.995529, -0.0558464, -0.076178)
- j_ras = (-0.0546131, 0.998342, -0.01818)
- k_ras = (-0.0770671, 0.0139384, 0.996928)
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig/001.mgz...
- #--------------------------------------------
- #@# MotionCor Sat Oct 7 16:42:30 CEST 2017
- Found 1 runs
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig/001.mgz
- Checking for (invalid) multi-frame inputs...
- WARNING: only one run found. This is OK, but motion
- correction cannot be performed on one run, so I'll
- copy the run to rawavg and continue.
- cp /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig/001.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz --conform
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-0.995529, -0.0558464, -0.076178)
- j_ras = (-0.0546131, 0.998342, -0.01818)
- k_ras = (-0.0770671, 0.0139384, 0.996928)
- changing data type from float to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- Reslicing using trilinear interpolation
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz...
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/transforms/talairach.xfm /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Talairach Sat Oct 7 16:42:41 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- nIters 1
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-903 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 16:42:41 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.14474
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.14474/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.14474/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -2.09548e-09, 0)
- j_ras = (0, -1.86265e-09, -1)
- k_ras = (-9.31323e-10, 1, -9.31323e-10)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.14474/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 16:42:44 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.14474/nu0.mnc ./tmp.mri_nu_correct.mni.14474/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.14474/0/ -iterations 1000 -distance 50
- [ntraut@tars-903:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/] [2017-10-07 16:42:44] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.14474/0/ ./tmp.mri_nu_correct.mni.14474/nu0.mnc ./tmp.mri_nu_correct.mni.14474/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 43
- CV of field change: 0.000992732
-
-
-
- mri_convert ./tmp.mri_nu_correct.mni.14474/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- mri_convert.bin ./tmp.mri_nu_correct.mni.14474/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.14474/nu1.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -2.09548e-09, 0)
- j_ras = (0, -1.86265e-09, -1)
- k_ras = (-9.31323e-10, 1, -9.31323e-10)
- INFO: transform src into the like-volume: orig.mgz
- changing data type from float to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- writing to orig_nu.mgz...
-
-
- Sat Oct 7 16:43:59 CEST 2017
- mri_nu_correct.mni done
- talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm
- talairach_avi log file is transforms/talairach_avi.log...
- Started at Sat Oct 7 16:43:59 CEST 2017
- Ended at Sat Oct 7 16:44:41 CEST 2017
- talairach_avi done
- cp transforms/talairach.auto.xfm transforms/talairach.xfm
- #--------------------------------------------
- #@# Talairach Failure Detection Sat Oct 7 16:44:43 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- talairach_afd -T 0.005 -xfm transforms/talairach.xfm
- talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.5961, pval=0.2817 >= threshold=0.0050)
- awk -f /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/extract_talairach_avi_QA.awk /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/transforms/talairach_avi.log
- tal_QC_AZS /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/transforms/talairach_avi.log
- TalAviQA: 0.97097
- z-score: -1
- #--------------------------------------------
- #@# Nu Intensity Correction Sat Oct 7 16:44:43 CEST 2017
- mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- nIters 2
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-903 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 16:44:43 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.15282
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.15282/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.15282/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -2.09548e-09, 0)
- j_ras = (0, -1.86265e-09, -1)
- k_ras = (-9.31323e-10, 1, -9.31323e-10)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.15282/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 16:44:46 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.15282/nu0.mnc ./tmp.mri_nu_correct.mni.15282/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.15282/0/
- [ntraut@tars-903:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/] [2017-10-07 16:44:46] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.15282/0/ ./tmp.mri_nu_correct.mni.15282/nu0.mnc ./tmp.mri_nu_correct.mni.15282/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 43
- CV of field change: 0.000958963
-
-
- --------------------------------------------------------
- Iteration 2 Sat Oct 7 16:45:40 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.15282/nu1.mnc ./tmp.mri_nu_correct.mni.15282/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.15282/1/
- [ntraut@tars-903:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/] [2017-10-07 16:45:40] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.15282/1/ ./tmp.mri_nu_correct.mni.15282/nu1.mnc ./tmp.mri_nu_correct.mni.15282/nu2.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 20
- CV of field change: 0.000989262
-
-
-
- mri_binarize --i ./tmp.mri_nu_correct.mni.15282/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.15282/ones.mgz
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.15282/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.15282/ones.mgz
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- input ./tmp.mri_nu_correct.mni.15282/nu2.mnc
- frame 0
- nErode3d 0
- nErode2d 0
- output ./tmp.mri_nu_correct.mni.15282/ones.mgz
- Binarizing based on threshold
- min -1
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Found 16777216 values in range
- Counting number of voxels in first frame
- Found 16777216 voxels in final mask
- Count: 16777216 16777216.000000 16777216 100.000000
- mri_binarize done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.15282/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.15282/sum.junk --avgwf ./tmp.mri_nu_correct.mni.15282/input.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.15282/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.15282/sum.junk --avgwf ./tmp.mri_nu_correct.mni.15282/input.mean.dat
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.15282/ones.mgz
- Loading orig.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.15282/input.mean.dat
- mri_segstats done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.15282/ones.mgz --i ./tmp.mri_nu_correct.mni.15282/nu2.mnc --sum ./tmp.mri_nu_correct.mni.15282/sum.junk --avgwf ./tmp.mri_nu_correct.mni.15282/output.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.15282/ones.mgz --i ./tmp.mri_nu_correct.mni.15282/nu2.mnc --sum ./tmp.mri_nu_correct.mni.15282/sum.junk --avgwf ./tmp.mri_nu_correct.mni.15282/output.mean.dat
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.15282/ones.mgz
- Loading ./tmp.mri_nu_correct.mni.15282/nu2.mnc
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.15282/output.mean.dat
- mri_segstats done
- mris_calc -o ./tmp.mri_nu_correct.mni.15282/nu2.mnc ./tmp.mri_nu_correct.mni.15282/nu2.mnc mul .99127287998644330871
- Saving result to './tmp.mri_nu_correct.mni.15282/nu2.mnc' (type = MINC ) [ ok ]
- mri_convert ./tmp.mri_nu_correct.mni.15282/nu2.mnc nu.mgz --like orig.mgz
- mri_convert.bin ./tmp.mri_nu_correct.mni.15282/nu2.mnc nu.mgz --like orig.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.15282/nu2.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -2.09548e-09, 0)
- j_ras = (0, -1.86265e-09, -1)
- k_ras = (-9.31323e-10, 1, -9.31323e-10)
- INFO: transform src into the like-volume: orig.mgz
- writing to nu.mgz...
- mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz
- type change took 0 minutes and 10 seconds.
- mapping ( 2, 128) to ( 3, 110)
-
-
- Sat Oct 7 16:47:14 CEST 2017
- mri_nu_correct.mni done
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/transforms/talairach.xfm nu.mgz nu.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Intensity Normalization Sat Oct 7 16:47:15 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_normalize -g 1 -mprage nu.mgz T1.mgz
- using max gradient = 1.000
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- reading from nu.mgz...
- normalizing image...
- talairach transform
- 1.08361 0.05895 0.06376 -4.22575;
- -0.05945 0.98234 0.03045 -19.54816;
- -0.07004 -0.02185 1.01120 -28.50851;
- 0.00000 0.00000 0.00000 1.00000;
- processing without aseg, no1d=0
- MRInormInit():
- INFO: Modifying talairach volume c_(r,a,s) based on average_305
- MRInormalize():
- MRIsplineNormalize(): npeaks = 23
- Starting OpenSpline(): npoints = 23
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 59 (58), valley at 23 (22)
- csf peak at 30, setting threshold to 49
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 58 (57), valley at 23 (22)
- csf peak at 29, setting threshold to 48
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to T1.mgz
- 3D bias adjustment took 2 minutes and 10 seconds.
- #--------------------------------------------
- #@# Skull Stripping Sat Oct 7 16:49:26 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta
- aligning to atlas containing skull, setting unknown_nbr_spacing = 5
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach_with_skull.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca'...
- average std = 22.9 using min determinant for regularization = 52.6
- 0 singular and 9002 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 8.7 or > 569.1
- total sample mean = 77.6 (1399 zeros)
- ************************************************
- spacing=8, using 3243 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 3243, passno 0, spacing 8
- resetting wm mean[0]: 100 --> 108
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=6.0
- skull bounding box = (47, 26, 16) --> (205, 245, 227)
- using (100, 99, 122) as brain centroid...
- mean wm in atlas = 108, using box (81,72,96) --> (119, 126,148) to find MRI wm
- before smoothing, mri peak at 108
- robust fit to distribution - 108 +- 4.1
- after smoothing, mri peak at 108, scaling input intensities by 1.000
- scaling channel 0 by 1
- initial log_p = -4.276
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.129969 @ (-9.091, 9.091, -9.091)
- max log p = -3.916443 @ (4.545, 4.545, 4.545)
- max log p = -3.910220 @ (2.273, -2.273, -2.273)
- max log p = -3.899201 @ (-1.136, 1.136, 1.136)
- max log p = -3.875045 @ (-0.568, 2.841, 0.568)
- max log p = -3.875045 @ (0.000, 0.000, 0.000)
- Found translation: (-4.0, 15.3, -5.1): log p = -3.875
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.808, old_max_log_p =-3.875 (thresh=-3.9)
- 1.06580 0.00000 -0.14032 3.82558;
- 0.00000 1.07500 0.00000 5.82841;
- 0.14032 0.00000 1.06580 -30.82928;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.808, old_max_log_p =-3.808 (thresh=-3.8)
- 1.06580 0.00000 -0.14032 3.82558;
- 0.00000 1.07500 0.00000 5.82841;
- 0.14032 0.00000 1.06580 -30.82928;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 2 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.664, old_max_log_p =-3.808 (thresh=-3.8)
- 1.07098 0.06557 -0.06575 -11.93575;
- -0.05986 1.05063 0.07278 6.31266;
- 0.06612 -0.06626 1.01096 -8.37636;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.662, old_max_log_p =-3.664 (thresh=-3.7)
- 1.03082 0.06311 -0.06328 -6.80533;
- -0.05986 1.05063 0.07278 6.31266;
- 0.06612 -0.06626 1.01096 -8.37636;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 4 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.642, old_max_log_p =-3.662 (thresh=-3.7)
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 5 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.642, old_max_log_p =-3.642 (thresh=-3.6)
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 3243 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 3243
- Quasinewton: input matrix
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.642 (old=-4.276)
- transform before final EM align:
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 364799 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 364799
- Quasinewton: input matrix
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 010: -log(p) = 4.1 tol 0.000000
- final transform:
- 1.02660 0.07939 -0.05349 -9.99165;
- -0.07591 1.04520 0.08165 7.99526;
- 0.05810 -0.07528 1.00963 -6.51185;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach_with_skull.lta...
- mri_em_register utimesec 1138.806875
- mri_em_register stimesec 1.104832
- mri_em_register ru_maxrss 609824
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 157613
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 148912
- mri_em_register ru_oublock 32
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 156
- mri_em_register ru_nivcsw 2783
- registration took 9 minutes and 58 seconds.
- mri_watershed -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mri_watershed.dat -T1 -brain_atlas /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz
- Mode: T1 normalized volume
- Mode: Use the information of atlas (default parms, --help for details)
- *********************************************************
- The input file is T1.mgz
- The output file is brainmask.auto.mgz
- Weighting the input with atlas information before watershed
- *************************WATERSHED**************************
- Sorting...
- first estimation of the COG coord: x=129 y=104 z=117 r=85
- first estimation of the main basin volume: 2601366 voxels
- Looking for seedpoints
- 2 found in the cerebellum
- 18 found in the rest of the brain
- global maximum in x=151, y=93, z=77, Imax=255
- CSF=12, WM_intensity=110, WM_VARIANCE=5
- WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110
- preflooding height equal to 10 percent
- done.
- Analyze...
- main basin size=9550585534 voxels, voxel volume =1.000
- = 9550585534 mmm3 = 9550585.856 cm3
- done.
- PostAnalyze...Basin Prior
- 46 basins merged thanks to atlas
- ***** 0 basin(s) merged in 1 iteration(s)
- ***** 0 voxel(s) added to the main basin
- done.
- Weighting the input with prior template
- ****************TEMPLATE DEFORMATION****************
- second estimation of the COG coord: x=148,y=142, z=144, r=108160 iterations
- ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^
- GLOBAL CSF_MIN=0, CSF_intensity=11, CSF_MAX=39 , nb = 40488
- RIGHT_CER CSF_MIN=0, CSF_intensity=11, CSF_MAX=30 , nb = -1053829220
- LEFT_CER CSF_MIN=0, CSF_intensity=11, CSF_MAX=32 , nb = 1105660824
- RIGHT_BRAIN CSF_MIN=0, CSF_intensity=9, CSF_MAX=38 , nb = -1051081163
- LEFT_BRAIN CSF_MIN=0, CSF_intensity=13, CSF_MAX=39 , nb = 1057194572
- OTHER CSF_MIN=0, CSF_intensity=14, CSF_MAX=47 , nb = 1074068370
- Problem with the least square interpolation in GM_MIN calculation.
-
- CSF_MAX TRANSITION GM_MIN GM
- GLOBAL
- before analyzing : 39, 31, 25, 47
- after analyzing : 25, 31, 31, 35
- RIGHT_CER
- before analyzing : 30, 27, 24, 56
- after analyzing : 22, 27, 27, 34
- LEFT_CER
- before analyzing : 32, 26, 14, 65
- after analyzing : 22, 26, 26, 35
- RIGHT_BRAIN
- before analyzing : 38, 30, 24, 47
- after analyzing : 24, 30, 30, 34
- LEFT_BRAIN
- before analyzing : 39, 31, 25, 48
- after analyzing : 26, 31, 31, 35
- OTHER
- before analyzing : 47, 48, 49, 56
- after analyzing : 47, 48, 49, 50
- mri_strip_skull: done peeling brain
- highly tesselated surface with 10242 vertices
- matching...111 iterations
- *********************VALIDATION*********************
- curvature mean = -0.013, std = 0.020
- curvature mean = 65.861, std = 16.133
- No Rigid alignment: -atlas Mode Off (basic atlas / no registration)
- before rotation: sse = 16.06, sigma = 33.41
- after rotation: sse = 16.06, sigma = 33.41
- Localization of inacurate regions: Erosion-Dilation steps
- the sse mean is 21.43, its var is 31.10
- before Erosion-Dilatation 26.65% of inacurate vertices
- after Erosion-Dilatation 41.31% of inacurate vertices
- 39.28% of 'positive' inacurate vertices
- 60.72% of 'negative' inacurate vertices
- The surface validation has detected a possible Error
- If the final segmentation is not valid,
- try using the option '-atlas'
- Scaling of atlas fields onto current surface fields
- ********FINAL ITERATIVE TEMPLATE DEFORMATION********
- Compute Local values csf/gray
- Fine Segmentation...102 iterations
- mri_strip_skull: done peeling brain
- Brain Size = 1729586 voxels, voxel volume = 1.000 mm3
- = 1729586 mmm3 = 1729.586 cm3
- ******************************
- Saving brainmask.auto.mgz
- done
- mri_watershed utimesec 48.732591
- mri_watershed stimesec 0.588910
- mri_watershed ru_maxrss 893420
- mri_watershed ru_ixrss 0
- mri_watershed ru_idrss 0
- mri_watershed ru_isrss 0
- mri_watershed ru_minflt 230692
- mri_watershed ru_majflt 0
- mri_watershed ru_nswap 0
- mri_watershed ru_inblock 7552
- mri_watershed ru_oublock 2736
- mri_watershed ru_msgsnd 0
- mri_watershed ru_msgrcv 0
- mri_watershed ru_nsignals 0
- mri_watershed ru_nvcsw 2141
- mri_watershed ru_nivcsw 133
- mri_watershed done
- cp brainmask.auto.mgz brainmask.mgz
- #-------------------------------------
- #@# EM Registration Sat Oct 7 17:00:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta
- setting unknown_nbr_spacing = 3
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 841 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 6.3 or > 503.7
- total sample mean = 78.8 (1011 zeros)
- ************************************************
- spacing=8, using 2830 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 2830, passno 0, spacing 8
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=21.1
- skull bounding box = (60, 44, 30) --> (194, 163, 206)
- using (105, 84, 118) as brain centroid...
- mean wm in atlas = 107, using box (89,69,96) --> (121, 98,139) to find MRI wm
- before smoothing, mri peak at 108
- robust fit to distribution - 107 +- 4.0
- after smoothing, mri peak at 107, scaling input intensities by 1.000
- scaling channel 0 by 1
- initial log_p = -4.096
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -3.811235 @ (-9.091, 9.091, -9.091)
- max log p = -3.583727 @ (4.545, 4.545, 4.545)
- max log p = -3.540361 @ (2.273, -2.273, -2.273)
- max log p = -3.468932 @ (-1.136, 1.136, 1.136)
- max log p = -3.456986 @ (0.568, 0.568, -0.568)
- max log p = -3.456986 @ (0.000, 0.000, 0.000)
- Found translation: (-2.8, 13.1, -6.3): log p = -3.457
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.341, old_max_log_p =-3.457 (thresh=-3.5)
- 1.06580 0.14032 0.00000 -26.27217;
- -0.14032 1.06580 0.00000 24.26026;
- 0.00000 0.00000 0.92500 2.12707;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.328, old_max_log_p =-3.341 (thresh=-3.3)
- 1.06580 0.14032 0.00000 -26.27217;
- -0.15084 1.14574 0.00000 17.13302;
- 0.00000 0.00000 0.92500 2.12707;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 2 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.328, old_max_log_p =-3.328 (thresh=-3.3)
- 1.06580 0.14032 0.00000 -26.27217;
- -0.15084 1.14574 0.00000 17.13302;
- 0.00000 0.00000 0.92500 2.12707;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.186, old_max_log_p =-3.328 (thresh=-3.3)
- 1.05281 0.02798 -0.06109 -5.83152;
- -0.03794 1.10900 0.05683 0.05922;
- 0.07726 -0.06305 0.95583 -2.75628;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 4 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.186, old_max_log_p =-3.186 (thresh=-3.2)
- 1.05281 0.02798 -0.06109 -5.83152;
- -0.03794 1.10900 0.05683 0.05922;
- 0.07726 -0.06305 0.95583 -2.75628;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 5 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.145, old_max_log_p =-3.186 (thresh=-3.2)
- 1.05037 0.06358 -0.05133 -10.83400;
- -0.07298 1.10931 0.05051 5.73313;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 6 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.141, old_max_log_p =-3.145 (thresh=-3.1)
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 7 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.141, old_max_log_p =-3.141 (thresh=-3.1)
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 2830 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 2830
- Quasinewton: input matrix
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.141 (old=-4.096)
- transform before final EM align:
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 315557 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 315557
- Quasinewton: input matrix
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 012: -log(p) = 3.8 tol 0.000000
- final transform:
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach.lta...
- mri_em_register utimesec 1221.755264
- mri_em_register stimesec 1.268807
- mri_em_register ru_maxrss 599052
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 158967
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 24
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 110
- mri_em_register ru_nivcsw 2138
- registration took 10 minutes and 29 seconds.
- #--------------------------------------
- #@# CA Normalize Sat Oct 7 17:10:40 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz
- writing control point volume to ctrl_pts.mgz
- using MR volume brainmask.mgz to mask input volume...
- reading 1 input volume
- reading atlas from '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- reading transform from 'transforms/talairach.lta'...
- reading input volume from nu.mgz...
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=21.1
- skull bounding box = (60, 44, 30) --> (194, 163, 206)
- using (105, 84, 118) as brain centroid...
- mean wm in atlas = 107, using box (89,69,96) --> (121, 98,139) to find MRI wm
- before smoothing, mri peak at 108
- robust fit to distribution - 107 +- 4.0
- after smoothing, mri peak at 107, scaling input intensities by 1.000
- scaling channel 0 by 1
- using 246344 sample points...
- INFO: compute sample coordinates transform
- 1.04914 0.06351 -0.05127 -10.67278;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69233;
- 0.00000 0.00000 0.00000 1.00000;
- INFO: transform used
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (124, 46, 28) --> (193, 154, 203)
- Left_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0
- 1 of 6877 (0.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (67, 45, 29) --> (134, 150, 204)
- Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0
- 0 of 6273 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (127, 124, 52) --> (172, 164, 109)
- Left_Cerebellum_White_Matter: limiting intensities to 92.0 --> 132.0
- 0 of 260 (0.0%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (83, 124, 52) --> (127, 160, 112)
- Right_Cerebellum_White_Matter: limiting intensities to 99.0 --> 132.0
- 0 of 115 (0.0%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (112, 115, 90) --> (145, 179, 122)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 0 of 105 (0.0%) samples deleted
- using 13630 total control points for intensity normalization...
- bias field = 0.964 +- 0.048
- 69 of 13629 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (124, 46, 28) --> (193, 154, 203)
- Left_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0
- 1 of 7504 (0.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (67, 45, 29) --> (134, 150, 204)
- Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0
- 0 of 6732 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (127, 124, 52) --> (172, 164, 109)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 38 of 342 (11.1%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (83, 124, 52) --> (127, 160, 112)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 1 of 155 (0.6%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (112, 115, 90) --> (145, 179, 122)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 68 of 174 (39.1%) samples deleted
- using 14907 total control points for intensity normalization...
- bias field = 1.030 +- 0.043
- 42 of 14728 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (124, 46, 28) --> (193, 154, 203)
- Left_Cerebral_White_Matter: limiting intensities to 91.0 --> 132.0
- 3 of 7481 (0.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (67, 45, 29) --> (134, 150, 204)
- Right_Cerebral_White_Matter: limiting intensities to 90.0 --> 132.0
- 0 of 6746 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (127, 124, 52) --> (172, 164, 109)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 197 of 391 (50.4%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (83, 124, 52) --> (127, 160, 112)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 37 of 198 (18.7%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (112, 115, 90) --> (145, 179, 122)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 119 of 236 (50.4%) samples deleted
- using 15052 total control points for intensity normalization...
- bias field = 1.025 +- 0.038
- 24 of 14561 control points discarded
- writing normalized volume to norm.mgz...
- writing control points to ctrl_pts.mgz
- freeing GCA...done.
- normalization took 1 minutes and 44 seconds.
- #--------------------------------------
- #@# CA Reg Sat Oct 7 17:12:24 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_ca_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z
- not handling expanded ventricles...
- using previously computed transform transforms/talairach.lta
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -regularize_mean 0.500
- -regularize 0.500
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_ca_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading input volume 'norm.mgz'...
- reading GCA '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- label assignment complete, 0 changed (0.00%)
- det(m_affine) = 1.13 (predicted orig area = 7.1)
- label assignment complete, 0 changed (0.00%)
- freeing gibbs priors...done.
- average std[0] = 5.0
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.039
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.847, neg=0, invalid=762
- 0001: dt=172.494492, rms=0.803 (5.278%), neg=0, invalid=762
- 0002: dt=245.910588, rms=0.787 (1.974%), neg=0, invalid=762
- 0003: dt=172.755245, rms=0.778 (1.133%), neg=0, invalid=762
- 0004: dt=295.936000, rms=0.772 (0.782%), neg=0, invalid=762
- 0005: dt=131.642276, rms=0.767 (0.568%), neg=0, invalid=762
- 0006: dt=517.888000, rms=0.762 (0.764%), neg=0, invalid=762
- 0007: dt=129.472000, rms=0.759 (0.315%), neg=0, invalid=762
- 0008: dt=1183.744000, rms=0.755 (0.562%), neg=0, invalid=762
- 0009: dt=129.472000, rms=0.750 (0.656%), neg=0, invalid=762
- 0010: dt=295.936000, rms=0.749 (0.143%), neg=0, invalid=762
- 0011: dt=295.936000, rms=0.748 (0.117%), neg=0, invalid=762
- 0012: dt=295.936000, rms=0.745 (0.416%), neg=0, invalid=762
- 0013: dt=295.936000, rms=0.742 (0.425%), neg=0, invalid=762
- 0014: dt=295.936000, rms=0.738 (0.513%), neg=0, invalid=762
- 0015: dt=295.936000, rms=0.733 (0.612%), neg=0, invalid=762
- 0016: dt=295.936000, rms=0.730 (0.503%), neg=0, invalid=762
- 0017: dt=295.936000, rms=0.725 (0.640%), neg=0, invalid=762
- 0018: dt=295.936000, rms=0.721 (0.573%), neg=0, invalid=762
- 0019: dt=295.936000, rms=0.718 (0.385%), neg=0, invalid=762
- 0020: dt=295.936000, rms=0.715 (0.467%), neg=0, invalid=762
- 0021: dt=295.936000, rms=0.712 (0.419%), neg=0, invalid=762
- 0022: dt=295.936000, rms=0.710 (0.291%), neg=0, invalid=762
- 0023: dt=295.936000, rms=0.707 (0.333%), neg=0, invalid=762
- 0024: dt=295.936000, rms=0.706 (0.260%), neg=0, invalid=762
- 0025: dt=295.936000, rms=0.704 (0.213%), neg=0, invalid=762
- 0026: dt=295.936000, rms=0.702 (0.258%), neg=0, invalid=762
- 0027: dt=295.936000, rms=0.701 (0.200%), neg=0, invalid=762
- 0028: dt=295.936000, rms=0.700 (0.143%), neg=0, invalid=762
- 0029: dt=295.936000, rms=0.698 (0.189%), neg=0, invalid=762
- 0030: dt=295.936000, rms=0.697 (0.185%), neg=0, invalid=762
- 0031: dt=295.936000, rms=0.696 (0.152%), neg=0, invalid=762
- 0032: dt=295.936000, rms=0.695 (0.130%), neg=0, invalid=762
- 0033: dt=295.936000, rms=0.694 (0.117%), neg=0, invalid=762
- 0034: dt=295.936000, rms=0.693 (0.144%), neg=0, invalid=762
- 0035: dt=295.936000, rms=0.693 (0.117%), neg=0, invalid=762
- 0036: dt=295.936000, rms=0.692 (0.107%), neg=0, invalid=762
- 0037: dt=129.472000, rms=0.692 (0.034%), neg=0, invalid=762
- 0038: dt=129.472000, rms=0.692 (0.017%), neg=0, invalid=762
- 0039: dt=129.472000, rms=0.691 (0.016%), neg=0, invalid=762
- 0040: dt=129.472000, rms=0.691 (0.008%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.692, neg=0, invalid=762
- 0041: dt=295.936000, rms=0.691 (0.195%), neg=0, invalid=762
- 0042: dt=295.936000, rms=0.691 (0.038%), neg=0, invalid=762
- 0043: dt=295.936000, rms=0.691 (-0.054%), neg=0, invalid=762
- setting smoothness coefficient to 0.154
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.699, neg=0, invalid=762
- 0044: dt=145.152000, rms=0.691 (1.089%), neg=0, invalid=762
- 0045: dt=331.776000, rms=0.681 (1.478%), neg=0, invalid=762
- 0046: dt=68.597256, rms=0.675 (0.941%), neg=0, invalid=762
- 0047: dt=331.776000, rms=0.669 (0.787%), neg=0, invalid=762
- 0048: dt=74.311111, rms=0.665 (0.667%), neg=0, invalid=762
- 0049: dt=145.152000, rms=0.663 (0.314%), neg=0, invalid=762
- 0050: dt=95.085714, rms=0.661 (0.274%), neg=0, invalid=762
- 0051: dt=103.680000, rms=0.660 (0.204%), neg=0, invalid=762
- 0052: dt=103.680000, rms=0.658 (0.235%), neg=0, invalid=762
- 0053: dt=103.680000, rms=0.656 (0.356%), neg=0, invalid=762
- 0054: dt=103.680000, rms=0.653 (0.465%), neg=0, invalid=762
- 0055: dt=103.680000, rms=0.649 (0.532%), neg=0, invalid=762
- 0056: dt=103.680000, rms=0.646 (0.563%), neg=0, invalid=762
- 0057: dt=103.680000, rms=0.642 (0.528%), neg=0, invalid=762
- 0058: dt=103.680000, rms=0.639 (0.465%), neg=0, invalid=762
- 0059: dt=103.680000, rms=0.637 (0.434%), neg=0, invalid=762
- 0060: dt=103.680000, rms=0.634 (0.392%), neg=0, invalid=762
- 0061: dt=103.680000, rms=0.632 (0.343%), neg=0, invalid=762
- 0062: dt=103.680000, rms=0.630 (0.262%), neg=0, invalid=762
- 0063: dt=103.680000, rms=0.629 (0.257%), neg=0, invalid=762
- 0064: dt=103.680000, rms=0.627 (0.221%), neg=0, invalid=762
- 0065: dt=103.680000, rms=0.626 (0.195%), neg=0, invalid=762
- 0066: dt=103.680000, rms=0.625 (0.141%), neg=0, invalid=762
- 0067: dt=103.680000, rms=0.624 (0.167%), neg=0, invalid=762
- 0068: dt=103.680000, rms=0.623 (0.138%), neg=0, invalid=762
- 0069: dt=103.680000, rms=0.622 (0.146%), neg=0, invalid=762
- 0070: dt=103.680000, rms=0.622 (0.119%), neg=0, invalid=762
- 0071: dt=103.680000, rms=0.621 (0.137%), neg=0, invalid=762
- 0072: dt=103.680000, rms=0.620 (0.117%), neg=0, invalid=762
- 0073: dt=103.680000, rms=0.619 (0.111%), neg=0, invalid=762
- 0074: dt=103.680000, rms=0.619 (0.007%), neg=0, invalid=762
- 0075: dt=103.680000, rms=0.619 (0.012%), neg=0, invalid=762
- 0076: dt=103.680000, rms=0.619 (0.016%), neg=0, invalid=762
- 0077: dt=103.680000, rms=0.619 (0.016%), neg=0, invalid=762
- 0078: dt=103.680000, rms=0.619 (0.018%), neg=0, invalid=762
- 0079: dt=103.680000, rms=0.619 (0.030%), neg=0, invalid=762
- 0080: dt=103.680000, rms=0.618 (0.026%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.619, neg=0, invalid=762
- 0081: dt=36.288000, rms=0.618 (0.206%), neg=0, invalid=762
- 0082: dt=36.288000, rms=0.618 (0.023%), neg=0, invalid=762
- 0083: dt=36.288000, rms=0.618 (0.007%), neg=0, invalid=762
- 0084: dt=36.288000, rms=0.618 (-0.010%), neg=0, invalid=762
- setting smoothness coefficient to 0.588
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.645, neg=0, invalid=762
- 0085: dt=0.000000, rms=0.645 (0.138%), neg=0, invalid=762
- 0086: dt=0.000000, rms=0.645 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.645, neg=0, invalid=762
- 0087: dt=0.000000, rms=0.645 (0.138%), neg=0, invalid=762
- 0088: dt=0.000000, rms=0.645 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.725, neg=0, invalid=762
- 0089: dt=4.900000, rms=0.704 (2.883%), neg=0, invalid=762
- 0090: dt=1.835052, rms=0.704 (0.085%), neg=0, invalid=762
- 0091: dt=1.835052, rms=0.704 (-0.033%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.704, neg=0, invalid=762
- 0092: dt=0.000000, rms=0.704 (0.110%), neg=0, invalid=762
- 0093: dt=0.000000, rms=0.704 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 5.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.783, neg=0, invalid=762
- 0094: dt=1.792000, rms=0.774 (1.165%), neg=0, invalid=762
- 0095: dt=1.909091, rms=0.767 (0.850%), neg=0, invalid=762
- 0096: dt=0.448000, rms=0.766 (0.084%), neg=0, invalid=762
- 0097: dt=0.448000, rms=0.766 (0.041%), neg=0, invalid=762
- 0098: dt=0.448000, rms=0.766 (0.035%), neg=0, invalid=762
- 0099: dt=0.448000, rms=0.766 (-0.004%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.766, neg=0, invalid=762
- 0100: dt=1.792000, rms=0.764 (0.323%), neg=0, invalid=762
- 0101: dt=0.320000, rms=0.764 (0.006%), neg=0, invalid=762
- 0102: dt=0.320000, rms=0.764 (0.003%), neg=0, invalid=762
- 0103: dt=0.320000, rms=0.764 (-0.001%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 10.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.715, neg=0, invalid=762
- 0104: dt=0.979905, rms=0.690 (3.496%), neg=0, invalid=762
- 0105: dt=0.096000, rms=0.689 (0.169%), neg=0, invalid=762
- 0106: dt=0.096000, rms=0.689 (-0.123%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.690, neg=0, invalid=762
- 0107: dt=0.024000, rms=0.689 (0.120%), neg=0, invalid=762
- 0108: dt=0.000000, rms=0.689 (0.000%), neg=0, invalid=762
- 0109: dt=0.050000, rms=0.689 (-0.031%), neg=0, invalid=762
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.10027 (20)
- mri peak = 0.28113 ( 7)
- Left_Lateral_Ventricle (4): linear fit = 0.31 x + 0.0 (1317 voxels, overlap=0.003)
- Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (1317 voxels, peak = 6), gca=8.0
- gca peak = 0.15565 (16)
- mri peak = 0.22033 ( 7)
- Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (1609 voxels, overlap=0.006)
- Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (1609 voxels, peak = 6), gca=6.4
- gca peak = 0.26829 (96)
- mri peak = 0.06996 (91)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (1110 voxels, overlap=1.004)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (1110 voxels, peak = 93), gca=92.6
- gca peak = 0.20183 (93)
- mri peak = 0.08068 (97)
- Left_Pallidum (13): linear fit = 1.01 x + 0.0 (882 voxels, overlap=1.004)
- Left_Pallidum (13): linear fit = 1.01 x + 0.0 (882 voxels, peak = 94), gca=94.4
- gca peak = 0.21683 (55)
- mri peak = 0.09112 (57)
- Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (917 voxels, overlap=0.995)
- Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (917 voxels, peak = 55), gca=55.0
- gca peak = 0.30730 (58)
- mri peak = 0.09057 (58)
- Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (771 voxels, overlap=0.995)
- Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (771 voxels, peak = 57), gca=57.1
- gca peak = 0.11430 (101)
- mri peak = 0.11254 (104)
- Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (63044 voxels, overlap=0.687)
- Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (63044 voxels, peak = 105), gca=104.5
- gca peak = 0.12076 (102)
- mri peak = 0.10959 (106)
- Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (67107 voxels, overlap=0.587)
- Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (67107 voxels, peak = 107), gca=106.6
- gca peak = 0.14995 (59)
- mri peak = 0.05775 (48)
- Left_Cerebral_Cortex (3): linear fit = 0.80 x + 0.0 (26279 voxels, overlap=0.225)
- Left_Cerebral_Cortex (3): linear fit = 0.80 x + 0.0 (26279 voxels, peak = 47), gca=46.9
- gca peak = 0.15082 (58)
- mri peak = 0.05159 (47)
- Right_Cerebral_Cortex (42): linear fit = 0.81 x + 0.0 (25262 voxels, overlap=0.222)
- Right_Cerebral_Cortex (42): linear fit = 0.81 x + 0.0 (25262 voxels, peak = 47), gca=47.3
- gca peak = 0.14161 (67)
- mri peak = 0.11826 (65)
- Right_Caudate (50): linear fit = 0.95 x + 0.0 (593 voxels, overlap=0.798)
- Right_Caudate (50): linear fit = 0.95 x + 0.0 (593 voxels, peak = 64), gca=64.0
- gca peak = 0.15243 (71)
- mri peak = 0.10149 (70)
- Left_Caudate (11): linear fit = 0.94 x + 0.0 (1071 voxels, overlap=0.747)
- Left_Caudate (11): linear fit = 0.94 x + 0.0 (1071 voxels, peak = 67), gca=67.1
- gca peak = 0.13336 (57)
- mri peak = 0.03809 (51)
- Left_Cerebellum_Cortex (8): linear fit = 0.94 x + 0.0 (29376 voxels, overlap=0.959)
- Left_Cerebellum_Cortex (8): linear fit = 0.94 x + 0.0 (29376 voxels, peak = 54), gca=53.9
- gca peak = 0.13252 (56)
- mri peak = 0.03952 (52)
- Right_Cerebellum_Cortex (47): linear fit = 0.94 x + 0.0 (28014 voxels, overlap=0.905)
- Right_Cerebellum_Cortex (47): linear fit = 0.94 x + 0.0 (28014 voxels, peak = 53), gca=52.9
- gca peak = 0.18181 (84)
- mri peak = 0.09928 (87)
- Left_Cerebellum_White_Matter (7): linear fit = 1.03 x + 0.0 (9143 voxels, overlap=0.526)
- Left_Cerebellum_White_Matter (7): linear fit = 1.03 x + 0.0 (9143 voxels, peak = 87), gca=86.9
- gca peak = 0.20573 (83)
- mri peak = 0.10225 (88)
- Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (8015 voxels, overlap=0.581)
- Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (8015 voxels, peak = 89), gca=89.2
- gca peak = 0.21969 (57)
- mri peak = 0.07475 (63)
- Left_Amygdala (18): linear fit = 1.12 x + 0.0 (550 voxels, overlap=0.847)
- Left_Amygdala (18): linear fit = 1.12 x + 0.0 (550 voxels, peak = 64), gca=63.6
- gca peak = 0.39313 (56)
- mri peak = 0.09106 (60)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (620 voxels, overlap=0.996)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (620 voxels, peak = 59), gca=58.5
- gca peak = 0.14181 (85)
- mri peak = 0.05633 (90)
- Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (5862 voxels, overlap=0.804)
- Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (5862 voxels, peak = 91), gca=90.5
- gca peak = 0.11978 (83)
- mri peak = 0.06317 (88)
- Right_Thalamus_Proper (49): linear fit = 1.04 x + 0.0 (4300 voxels, overlap=0.929)
- Right_Thalamus_Proper (49): linear fit = 1.04 x + 0.0 (4300 voxels, peak = 87), gca=86.7
- gca peak = 0.13399 (79)
- mri peak = 0.05581 (75)
- Left_Putamen (12): linear fit = 0.98 x + 0.0 (2452 voxels, overlap=0.988)
- Left_Putamen (12): linear fit = 0.98 x + 0.0 (2452 voxels, peak = 77), gca=77.0
- gca peak = 0.14159 (79)
- mri peak = 0.07187 (77)
- Right_Putamen (51): linear fit = 1.00 x + 0.0 (2567 voxels, overlap=0.936)
- Right_Putamen (51): linear fit = 1.00 x + 0.0 (2567 voxels, peak = 79), gca=78.6
- gca peak = 0.10025 (80)
- mri peak = 0.09047 (88)
- Brain_Stem (16): linear fit = 1.11 x + 0.0 (12264 voxels, overlap=0.402)
- Brain_Stem (16): linear fit = 1.11 x + 0.0 (12264 voxels, peak = 88), gca=88.4
- gca peak = 0.13281 (86)
- mri peak = 0.06926 (95)
- Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1518 voxels, overlap=0.628)
- Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1518 voxels, peak = 96), gca=95.9
- gca peak = 0.12801 (89)
- mri peak = 0.06237 (98)
- Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1966 voxels, overlap=0.651)
- Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1966 voxels, peak = 97), gca=97.5
- gca peak = 0.20494 (23)
- mri peak = 1.00000 (29)
- gca peak = 0.15061 (21)
- mri peak = 0.16228 (12)
- Fourth_Ventricle (15): linear fit = 0.47 x + 0.0 (470 voxels, overlap=0.285)
- Fourth_Ventricle (15): linear fit = 0.47 x + 0.0 (470 voxels, peak = 10), gca=10.0
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.18056 (32)
- gca peak Left_Thalamus = 0.64095 (94)
- gca peak Third_Ventricle = 0.20494 (23)
- gca peak Fourth_Ventricle = 0.15061 (21)
- gca peak CSF = 0.20999 (34)
- gca peak Left_Accumbens_area = 0.39030 (62)
- gca peak Left_undetermined = 0.95280 (25)
- gca peak Left_vessel = 0.67734 (53)
- gca peak Left_choroid_plexus = 0.09433 (44)
- gca peak Right_Inf_Lat_Vent = 0.23544 (26)
- gca peak Right_Accumbens_area = 0.30312 (64)
- gca peak Right_vessel = 0.46315 (51)
- gca peak Right_choroid_plexus = 0.14086 (44)
- gca peak Fifth_Ventricle = 0.51669 (36)
- gca peak WM_hypointensities = 0.09722 (76)
- gca peak non_WM_hypointensities = 0.11899 (47)
- gca peak Optic_Chiasm = 0.39033 (72)
- label assignment complete, 0 changed (0.00%)
- not using caudate to estimate GM means
- estimating mean gm scale to be 0.96 x + 0.0
- estimating mean wm scale to be 1.04 x + 0.0
- estimating mean csf scale to be 0.40 x + 0.0
- saving intensity scales to talairach.label_intensities.txt
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.725, neg=0, invalid=762
- 0110: dt=139.821656, rms=0.718 (0.998%), neg=0, invalid=762
- 0111: dt=295.936000, rms=0.714 (0.520%), neg=0, invalid=762
- 0112: dt=129.472000, rms=0.712 (0.276%), neg=0, invalid=762
- 0113: dt=129.472000, rms=0.711 (0.126%), neg=0, invalid=762
- 0114: dt=517.888000, rms=0.709 (0.316%), neg=0, invalid=762
- 0115: dt=92.480000, rms=0.708 (0.117%), neg=0, invalid=762
- 0116: dt=1479.680000, rms=0.705 (0.451%), neg=0, invalid=762
- 0117: dt=73.984000, rms=0.704 (0.182%), neg=0, invalid=762
- 0118: dt=295.936000, rms=0.703 (0.048%), neg=0, invalid=762
- 0119: dt=295.936000, rms=0.703 (0.050%), neg=0, invalid=762
- 0120: dt=295.936000, rms=0.703 (-0.007%), neg=0, invalid=762
- 0121: dt=73.984000, rms=0.702 (0.095%), neg=0, invalid=762
- 0122: dt=443.904000, rms=0.702 (0.059%), neg=0, invalid=762
- 0123: dt=129.472000, rms=0.701 (0.085%), neg=0, invalid=762
- 0124: dt=129.472000, rms=0.701 (0.021%), neg=0, invalid=762
- 0125: dt=129.472000, rms=0.701 (0.038%), neg=0, invalid=762
- 0126: dt=129.472000, rms=0.700 (0.053%), neg=0, invalid=762
- 0127: dt=129.472000, rms=0.700 (0.070%), neg=0, invalid=762
- 0128: dt=129.472000, rms=0.699 (0.079%), neg=0, invalid=762
- 0129: dt=129.472000, rms=0.699 (0.099%), neg=0, invalid=762
- 0130: dt=129.472000, rms=0.698 (0.102%), neg=0, invalid=762
- 0131: dt=129.472000, rms=0.697 (0.101%), neg=0, invalid=762
- 0132: dt=129.472000, rms=0.697 (0.100%), neg=0, invalid=762
- 0133: dt=129.472000, rms=0.696 (0.105%), neg=0, invalid=762
- 0134: dt=129.472000, rms=0.695 (0.103%), neg=0, invalid=762
- 0135: dt=129.472000, rms=0.694 (0.094%), neg=0, invalid=762
- 0136: dt=129.472000, rms=0.694 (0.089%), neg=0, invalid=762
- 0137: dt=129.472000, rms=0.693 (0.085%), neg=0, invalid=762
- 0138: dt=129.472000, rms=0.693 (0.086%), neg=0, invalid=762
- 0139: dt=129.472000, rms=0.692 (0.085%), neg=0, invalid=762
- 0140: dt=129.472000, rms=0.692 (0.080%), neg=0, invalid=762
- 0141: dt=129.472000, rms=0.691 (0.075%), neg=0, invalid=762
- 0142: dt=129.472000, rms=0.690 (0.074%), neg=0, invalid=762
- 0143: dt=129.472000, rms=0.690 (0.071%), neg=0, invalid=762
- 0144: dt=129.472000, rms=0.690 (0.065%), neg=0, invalid=762
- 0145: dt=129.472000, rms=0.689 (0.060%), neg=0, invalid=762
- 0146: dt=129.472000, rms=0.689 (0.060%), neg=0, invalid=762
- 0147: dt=129.472000, rms=0.688 (0.057%), neg=0, invalid=762
- 0148: dt=129.472000, rms=0.688 (0.056%), neg=0, invalid=762
- 0149: dt=129.472000, rms=0.688 (0.052%), neg=0, invalid=762
- 0150: dt=129.472000, rms=0.687 (0.052%), neg=0, invalid=762
- 0151: dt=129.472000, rms=0.687 (0.049%), neg=0, invalid=762
- 0152: dt=129.472000, rms=0.687 (0.047%), neg=0, invalid=762
- 0153: dt=129.472000, rms=0.686 (0.042%), neg=0, invalid=762
- 0154: dt=129.472000, rms=0.686 (0.036%), neg=0, invalid=762
- 0155: dt=129.472000, rms=0.686 (0.039%), neg=0, invalid=762
- 0156: dt=129.472000, rms=0.686 (0.039%), neg=0, invalid=762
- 0157: dt=129.472000, rms=0.685 (0.040%), neg=0, invalid=762
- 0158: dt=129.472000, rms=0.685 (0.035%), neg=0, invalid=762
- 0159: dt=129.472000, rms=0.685 (0.033%), neg=0, invalid=762
- 0160: dt=129.472000, rms=0.685 (0.032%), neg=0, invalid=762
- 0161: dt=129.472000, rms=0.684 (0.032%), neg=0, invalid=762
- 0162: dt=129.472000, rms=0.684 (0.032%), neg=0, invalid=762
- 0163: dt=129.472000, rms=0.684 (0.034%), neg=0, invalid=762
- 0164: dt=129.472000, rms=0.684 (0.032%), neg=0, invalid=762
- 0165: dt=129.472000, rms=0.683 (0.032%), neg=0, invalid=762
- 0166: dt=129.472000, rms=0.683 (0.031%), neg=0, invalid=762
- 0167: dt=129.472000, rms=0.683 (0.029%), neg=0, invalid=762
- 0168: dt=129.472000, rms=0.683 (0.030%), neg=0, invalid=762
- 0169: dt=129.472000, rms=0.683 (0.031%), neg=0, invalid=762
- 0170: dt=129.472000, rms=0.682 (0.032%), neg=0, invalid=762
- 0171: dt=129.472000, rms=0.682 (0.030%), neg=0, invalid=762
- 0172: dt=129.472000, rms=0.682 (0.026%), neg=0, invalid=762
- 0173: dt=129.472000, rms=0.682 (0.023%), neg=0, invalid=762
- 0174: dt=129.472000, rms=0.682 (0.023%), neg=0, invalid=762
- 0175: dt=129.472000, rms=0.682 (0.024%), neg=0, invalid=762
- 0176: dt=129.472000, rms=0.681 (0.024%), neg=0, invalid=762
- 0177: dt=887.808000, rms=0.681 (0.010%), neg=0, invalid=762
- 0178: dt=887.808000, rms=0.681 (-0.409%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.682, neg=0, invalid=762
- 0179: dt=129.472000, rms=0.681 (0.206%), neg=0, invalid=762
- 0180: dt=517.888000, rms=0.680 (0.109%), neg=0, invalid=762
- 0181: dt=32.368000, rms=0.680 (0.001%), neg=0, invalid=762
- 0182: dt=32.368000, rms=0.680 (0.004%), neg=0, invalid=762
- 0183: dt=32.368000, rms=0.680 (-0.004%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.682, neg=0, invalid=762
- 0184: dt=220.299320, rms=0.674 (1.094%), neg=0, invalid=762
- 0185: dt=118.240469, rms=0.666 (1.292%), neg=0, invalid=762
- 0186: dt=71.166994, rms=0.663 (0.438%), neg=0, invalid=762
- 0187: dt=248.832000, rms=0.657 (0.796%), neg=0, invalid=762
- 0188: dt=79.627907, rms=0.654 (0.466%), neg=0, invalid=762
- 0189: dt=91.428571, rms=0.652 (0.377%), neg=0, invalid=762
- 0190: dt=97.797753, rms=0.650 (0.271%), neg=0, invalid=762
- 0191: dt=97.523810, rms=0.648 (0.279%), neg=0, invalid=762
- 0192: dt=91.428571, rms=0.647 (0.241%), neg=0, invalid=762
- 0193: dt=102.760563, rms=0.645 (0.231%), neg=0, invalid=762
- 0194: dt=87.540230, rms=0.644 (0.214%), neg=0, invalid=762
- 0195: dt=103.680000, rms=0.643 (0.194%), neg=0, invalid=762
- 0196: dt=83.809524, rms=0.641 (0.193%), neg=0, invalid=762
- 0197: dt=103.680000, rms=0.640 (0.170%), neg=0, invalid=762
- 0198: dt=90.352941, rms=0.639 (0.174%), neg=0, invalid=762
- 0199: dt=82.944000, rms=0.638 (0.145%), neg=0, invalid=762
- 0200: dt=124.416000, rms=0.637 (0.168%), neg=0, invalid=762
- 0201: dt=72.091954, rms=0.636 (0.145%), neg=0, invalid=762
- 0202: dt=145.152000, rms=0.635 (0.159%), neg=0, invalid=762
- 0203: dt=66.438095, rms=0.634 (0.145%), neg=0, invalid=762
- 0204: dt=145.152000, rms=0.633 (0.150%), neg=0, invalid=762
- 0205: dt=73.513514, rms=0.633 (0.126%), neg=0, invalid=762
- 0206: dt=124.416000, rms=0.632 (0.115%), neg=0, invalid=762
- 0207: dt=76.403101, rms=0.631 (0.122%), neg=0, invalid=762
- 0208: dt=103.680000, rms=0.630 (0.095%), neg=0, invalid=762
- 0209: dt=82.944000, rms=0.630 (0.108%), neg=0, invalid=762
- 0210: dt=103.680000, rms=0.629 (0.087%), neg=0, invalid=762
- 0211: dt=103.680000, rms=0.629 (0.099%), neg=0, invalid=762
- 0212: dt=62.208000, rms=0.628 (0.084%), neg=0, invalid=762
- 0213: dt=145.152000, rms=0.627 (0.125%), neg=0, invalid=762
- 0214: dt=36.288000, rms=0.627 (0.046%), neg=0, invalid=762
- 0215: dt=36.288000, rms=0.627 (0.034%), neg=0, invalid=762
- 0216: dt=18.144000, rms=0.627 (0.013%), neg=0, invalid=762
- 0217: dt=4.536000, rms=0.627 (0.006%), neg=0, invalid=762
- 0218: dt=2.268000, rms=0.627 (0.002%), neg=0, invalid=762
- 0219: dt=0.141750, rms=0.627 (0.000%), neg=0, invalid=762
- 0220: dt=0.017719, rms=0.627 (0.000%), neg=0, invalid=762
- 0221: dt=0.000069, rms=0.627 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.628, neg=0, invalid=762
- 0222: dt=0.000000, rms=0.627 (0.167%), neg=0, invalid=762
- 0223: dt=0.000000, rms=0.627 (0.000%), neg=0, invalid=762
- 0224: dt=0.000007, rms=0.627 (0.000%), neg=0, invalid=762
- 0225: dt=0.000003, rms=0.627 (-0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.632, neg=0, invalid=762
- 0226: dt=44.800000, rms=0.615 (2.816%), neg=0, invalid=762
- 0227: dt=44.800000, rms=0.603 (1.864%), neg=0, invalid=762
- 0228: dt=44.800000, rms=0.595 (1.397%), neg=0, invalid=762
- 0229: dt=44.800000, rms=0.588 (1.098%), neg=0, invalid=762
- 0230: dt=128.000000, rms=0.575 (2.217%), neg=0, invalid=762
- 0231: dt=44.800000, rms=0.572 (0.483%), neg=0, invalid=762
- 0232: dt=44.800000, rms=0.569 (0.515%), neg=0, invalid=762
- 0233: dt=11.200000, rms=0.568 (0.174%), neg=0, invalid=762
- 0234: dt=11.200000, rms=0.568 (0.110%), neg=0, invalid=762
- 0235: dt=11.200000, rms=0.567 (0.091%), neg=0, invalid=762
- 0236: dt=11.200000, rms=0.567 (0.086%), neg=0, invalid=762
- 0237: dt=0.037500, rms=0.567 (-0.001%), neg=0, invalid=762
- 0238: dt=0.037500, rms=0.567 (0.000%), neg=0, invalid=762
- 0239: dt=0.001172, rms=0.567 (0.000%), neg=0, invalid=762
- 0240: dt=0.000073, rms=0.567 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.568, neg=0, invalid=762
- 0241: dt=0.000000, rms=0.567 (0.190%), neg=0, invalid=762
- 0242: dt=0.000000, rms=0.567 (0.000%), neg=0, invalid=762
- 0243: dt=0.000015, rms=0.567 (0.000%), neg=0, invalid=762
- 0244: dt=0.000008, rms=0.567 (0.000%), neg=0, invalid=762
- 0245: dt=0.000004, rms=0.567 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.587, neg=0, invalid=762
- 0246: dt=7.621716, rms=0.584 (0.534%), neg=0, invalid=762
- 0247: dt=2.880000, rms=0.583 (0.112%), neg=0, invalid=762
- 0248: dt=0.252000, rms=0.583 (0.012%), neg=0, invalid=762
- 0249: dt=0.252000, rms=0.583 (0.009%), neg=0, invalid=762
- 0250: dt=0.063000, rms=0.583 (0.002%), neg=0, invalid=762
- 0251: dt=0.015750, rms=0.583 (0.000%), neg=0, invalid=762
- 0252: dt=0.003938, rms=0.583 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.584, neg=0, invalid=762
- 0253: dt=0.003938, rms=0.583 (0.179%), neg=0, invalid=762
- 0254: dt=0.000984, rms=0.583 (0.000%), neg=0, invalid=762
- 0255: dt=0.000984, rms=0.583 (0.000%), neg=0, invalid=762
- 0256: dt=0.000246, rms=0.583 (0.000%), neg=0, invalid=762
- 0257: dt=0.000123, rms=0.583 (0.000%), neg=0, invalid=762
- 0258: dt=0.000000, rms=0.583 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.616, neg=0, invalid=762
- 0259: dt=1.024000, rms=0.614 (0.282%), neg=0, invalid=762
- 0260: dt=0.320000, rms=0.614 (0.008%), neg=0, invalid=762
- 0261: dt=0.320000, rms=0.614 (0.000%), neg=0, invalid=762
- 0262: dt=0.320000, rms=0.614 (-0.034%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.615, neg=0, invalid=762
- 0263: dt=1.280000, rms=0.613 (0.263%), neg=0, invalid=762
- 0264: dt=0.448000, rms=0.613 (0.011%), neg=0, invalid=762
- 0265: dt=0.448000, rms=0.613 (-0.004%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.575, neg=0, invalid=762
- 0266: dt=0.448000, rms=0.555 (3.381%), neg=0, invalid=762
- 0267: dt=0.448000, rms=0.550 (1.006%), neg=0, invalid=762
- 0268: dt=0.448000, rms=0.547 (0.529%), neg=0, invalid=762
- 0269: dt=0.448000, rms=0.545 (0.326%), neg=0, invalid=762
- 0270: dt=0.448000, rms=0.544 (0.240%), neg=0, invalid=762
- 0271: dt=0.448000, rms=0.543 (0.169%), neg=0, invalid=762
- 0272: dt=0.464286, rms=0.542 (0.148%), neg=0, invalid=762
- 0273: dt=0.448000, rms=0.541 (0.102%), neg=0, invalid=762
- 0274: dt=0.448000, rms=0.541 (0.098%), neg=0, invalid=762
- 0275: dt=0.448000, rms=0.540 (0.066%), neg=0, invalid=762
- 0276: dt=0.448000, rms=0.540 (0.073%), neg=0, invalid=762
- 0277: dt=0.448000, rms=0.540 (0.044%), neg=0, invalid=762
- 0278: dt=0.448000, rms=0.540 (0.056%), neg=0, invalid=762
- 0279: dt=0.448000, rms=0.539 (0.077%), neg=0, invalid=762
- 0280: dt=0.448000, rms=0.539 (0.099%), neg=0, invalid=762
- 0281: dt=0.448000, rms=0.538 (0.113%), neg=0, invalid=762
- 0282: dt=0.448000, rms=0.538 (0.013%), neg=0, invalid=762
- 0283: dt=0.448000, rms=0.538 (0.009%), neg=0, invalid=762
- 0284: dt=0.448000, rms=0.538 (0.008%), neg=0, invalid=762
- 0285: dt=0.448000, rms=0.538 (0.007%), neg=0, invalid=762
- 0286: dt=0.448000, rms=0.538 (0.011%), neg=0, invalid=762
- 0287: dt=0.448000, rms=0.538 (0.018%), neg=0, invalid=762
- 0288: dt=0.448000, rms=0.537 (0.025%), neg=0, invalid=762
- 0289: dt=0.448000, rms=0.537 (0.022%), neg=0, invalid=762
- 0290: dt=0.448000, rms=0.537 (0.001%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.538, neg=0, invalid=762
- 0291: dt=0.448000, rms=0.533 (1.039%), neg=0, invalid=762
- 0292: dt=0.448000, rms=0.532 (0.055%), neg=0, invalid=762
- 0293: dt=0.448000, rms=0.532 (0.018%), neg=0, invalid=762
- 0294: dt=0.448000, rms=0.532 (-0.013%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- ********************* ALLOWING NEGATIVE NODES IN DEFORMATION********************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.531, neg=0, invalid=762
- 0295: dt=13.872000, rms=0.530 (0.198%), neg=0, invalid=762
- 0296: dt=8.092000, rms=0.530 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.531, neg=0, invalid=762
- 0297: dt=129.472000, rms=0.529 (0.263%), neg=0, invalid=762
- 0298: dt=295.936000, rms=0.529 (0.044%), neg=0, invalid=762
- 0299: dt=295.936000, rms=0.529 (-0.410%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.530, neg=0, invalid=762
- 0300: dt=76.967320, rms=0.528 (0.374%), neg=0, invalid=762
- 0301: dt=82.944000, rms=0.527 (0.160%), neg=0, invalid=762
- 0302: dt=82.944000, rms=0.527 (0.059%), neg=0, invalid=762
- 0303: dt=82.944000, rms=0.526 (0.247%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0304: dt=82.944000, rms=0.526 (-0.028%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0305: dt=82.944000, rms=0.525 (0.097%), neg=0, invalid=762
- 0306: dt=36.288000, rms=0.525 (0.050%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.526, neg=0, invalid=762
- 0307: dt=108.606061, rms=0.523 (0.503%), neg=0, invalid=762
- 0308: dt=36.288000, rms=0.522 (0.137%), neg=0, invalid=762
- 0309: dt=36.288000, rms=0.522 (0.040%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0310: dt=36.288000, rms=0.522 (0.073%), neg=0, invalid=762
- 0311: dt=36.288000, rms=0.521 (0.092%), neg=0, invalid=762
- 0312: dt=36.288000, rms=0.521 (0.103%), neg=0, invalid=762
- 0313: dt=36.288000, rms=0.520 (0.101%), neg=0, invalid=762
- 0314: dt=36.288000, rms=0.520 (0.101%), neg=0, invalid=762
- 0315: dt=36.288000, rms=0.519 (0.101%), neg=0, invalid=762
- 0316: dt=145.152000, rms=0.519 (0.059%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.520, neg=0, invalid=762
- iter 0, gcam->neg = 24
- after 10 iterations, nbhd size=1, neg = 0
- 0317: dt=74.666667, rms=0.513 (1.419%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 2 iterations, nbhd size=0, neg = 0
- 0318: dt=53.760000, rms=0.508 (0.983%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0319: dt=31.263427, rms=0.506 (0.478%), neg=0, invalid=762
- iter 0, gcam->neg = 7
- after 2 iterations, nbhd size=0, neg = 0
- 0320: dt=44.800000, rms=0.504 (0.411%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 11 iterations, nbhd size=1, neg = 0
- 0321: dt=25.600000, rms=0.503 (0.189%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 2 iterations, nbhd size=0, neg = 0
- 0322: dt=25.600000, rms=0.502 (0.195%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 1 iterations, nbhd size=0, neg = 0
- 0323: dt=25.600000, rms=0.500 (0.284%), neg=0, invalid=762
- iter 0, gcam->neg = 7
- after 12 iterations, nbhd size=1, neg = 0
- 0324: dt=25.600000, rms=0.499 (0.334%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 1 iterations, nbhd size=0, neg = 0
- 0325: dt=25.600000, rms=0.497 (0.396%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 13 iterations, nbhd size=1, neg = 0
- 0326: dt=25.600000, rms=0.495 (0.379%), neg=0, invalid=762
- iter 0, gcam->neg = 12
- after 13 iterations, nbhd size=1, neg = 0
- 0327: dt=25.600000, rms=0.493 (0.338%), neg=0, invalid=762
- iter 0, gcam->neg = 13
- after 13 iterations, nbhd size=1, neg = 0
- 0328: dt=25.600000, rms=0.492 (0.273%), neg=0, invalid=762
- iter 0, gcam->neg = 15
- after 15 iterations, nbhd size=1, neg = 0
- 0329: dt=25.600000, rms=0.490 (0.255%), neg=0, invalid=762
- iter 0, gcam->neg = 19
- after 6 iterations, nbhd size=0, neg = 0
- 0330: dt=25.600000, rms=0.489 (0.234%), neg=0, invalid=762
- iter 0, gcam->neg = 20
- after 15 iterations, nbhd size=1, neg = 0
- 0331: dt=25.600000, rms=0.488 (0.196%), neg=0, invalid=762
- iter 0, gcam->neg = 18
- after 14 iterations, nbhd size=1, neg = 0
- 0332: dt=25.600000, rms=0.487 (0.172%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 14 iterations, nbhd size=1, neg = 0
- 0333: dt=25.600000, rms=0.487 (0.155%), neg=0, invalid=762
- iter 0, gcam->neg = 18
- after 10 iterations, nbhd size=0, neg = 0
- 0334: dt=25.600000, rms=0.486 (0.154%), neg=0, invalid=762
- iter 0, gcam->neg = 17
- after 12 iterations, nbhd size=1, neg = 0
- 0335: dt=25.600000, rms=0.485 (0.127%), neg=0, invalid=762
- iter 0, gcam->neg = 20
- after 10 iterations, nbhd size=1, neg = 0
- 0336: dt=25.600000, rms=0.485 (0.136%), neg=0, invalid=762
- iter 0, gcam->neg = 21
- after 14 iterations, nbhd size=1, neg = 0
- 0337: dt=25.600000, rms=0.484 (0.106%), neg=0, invalid=762
- iter 0, gcam->neg = 12
- after 11 iterations, nbhd size=1, neg = 0
- 0338: dt=25.600000, rms=0.484 (0.092%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 4 iterations, nbhd size=0, neg = 0
- 0339: dt=25.600000, rms=0.484 (0.007%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0340: dt=25.600000, rms=0.484 (0.029%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0341: dt=25.600000, rms=0.483 (0.038%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 6 iterations, nbhd size=0, neg = 0
- 0342: dt=25.600000, rms=0.483 (0.009%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 7 iterations, nbhd size=0, neg = 0
- 0343: dt=25.600000, rms=0.483 (0.034%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 13 iterations, nbhd size=1, neg = 0
- 0344: dt=25.600000, rms=0.483 (0.011%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.484, neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 0 iterations, nbhd size=0, neg = 0
- 0345: dt=60.952381, rms=0.481 (0.763%), neg=0, invalid=762
- 0346: dt=25.600000, rms=0.480 (0.229%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0347: dt=25.600000, rms=0.479 (0.065%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 2 iterations, nbhd size=0, neg = 0
- 0348: dt=25.600000, rms=0.479 (0.101%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0349: dt=25.600000, rms=0.478 (0.102%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0350: dt=25.600000, rms=0.478 (0.084%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0351: dt=25.600000, rms=0.478 (0.016%), neg=0, invalid=762
- 0352: dt=11.200000, rms=0.478 (0.056%), neg=0, invalid=762
- 0353: dt=44.800000, rms=0.477 (0.043%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.487, neg=0, invalid=762
- 0354: dt=0.000000, rms=0.486 (0.244%), neg=0, invalid=762
- 0355: dt=0.000000, rms=0.486 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.487, neg=0, invalid=762
- 0356: dt=0.000176, rms=0.486 (0.244%), neg=0, invalid=762
- 0357: dt=0.000000, rms=0.486 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.504, neg=0, invalid=762
- 0358: dt=1.280000, rms=0.501 (0.691%), neg=0, invalid=762
- 0359: dt=0.384000, rms=0.501 (0.018%), neg=0, invalid=762
- 0360: dt=0.384000, rms=0.501 (-0.012%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.502, neg=0, invalid=762
- 0361: dt=0.768000, rms=0.500 (0.305%), neg=0, invalid=762
- 0362: dt=0.320000, rms=0.500 (0.006%), neg=0, invalid=762
- 0363: dt=0.320000, rms=0.500 (0.002%), neg=0, invalid=762
- 0364: dt=0.320000, rms=0.500 (-0.042%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.487, neg=0, invalid=762
- iter 0, gcam->neg = 1515
- after 17 iterations, nbhd size=1, neg = 0
- 0365: dt=2.472549, rms=0.446 (8.303%), neg=0, invalid=762
- 0366: dt=0.112000, rms=0.446 (0.163%), neg=0, invalid=762
- 0367: dt=0.112000, rms=0.446 (-0.058%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.447, neg=0, invalid=762
- 0368: dt=0.096000, rms=0.445 (0.364%), neg=0, invalid=762
- 0369: dt=0.000000, rms=0.445 (0.000%), neg=0, invalid=762
- 0370: dt=0.050000, rms=0.445 (-0.018%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- label assignment complete, 0 changed (0.00%)
- ***************** morphing with label term set to 0 *******************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.428, neg=0, invalid=762
- 0371: dt=0.000000, rms=0.428 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.428, neg=0, invalid=762
- 0372: dt=32.368000, rms=0.428 (0.002%), neg=0, invalid=762
- 0373: dt=32.368000, rms=0.428 (0.001%), neg=0, invalid=762
- 0374: dt=32.368000, rms=0.428 (0.001%), neg=0, invalid=762
- 0375: dt=32.368000, rms=0.428 (0.000%), neg=0, invalid=762
- 0376: dt=32.368000, rms=0.428 (-0.001%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.428, neg=0, invalid=762
- 0377: dt=0.000000, rms=0.428 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.428, neg=0, invalid=762
- 0378: dt=103.680000, rms=0.428 (0.052%), neg=0, invalid=762
- 0379: dt=145.152000, rms=0.427 (0.067%), neg=0, invalid=762
- 0380: dt=36.288000, rms=0.427 (0.011%), neg=0, invalid=762
- 0381: dt=36.288000, rms=0.427 (0.008%), neg=0, invalid=762
- 0382: dt=36.288000, rms=0.427 (0.014%), neg=0, invalid=762
- 0383: dt=36.288000, rms=0.427 (0.019%), neg=0, invalid=762
- 0384: dt=36.288000, rms=0.427 (0.024%), neg=0, invalid=762
- 0385: dt=36.288000, rms=0.427 (0.025%), neg=0, invalid=762
- 0386: dt=36.288000, rms=0.427 (0.024%), neg=0, invalid=762
- 0387: dt=36.288000, rms=0.427 (0.021%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.428, neg=0, invalid=762
- 0388: dt=25.600000, rms=0.427 (0.181%), neg=0, invalid=762
- 0389: dt=44.800000, rms=0.426 (0.127%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 6 iterations, nbhd size=1, neg = 0
- 0390: dt=44.800000, rms=0.426 (0.140%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 1 iterations, nbhd size=0, neg = 0
- 0391: dt=44.800000, rms=0.425 (0.157%), neg=0, invalid=762
- iter 0, gcam->neg = 25
- after 13 iterations, nbhd size=1, neg = 0
- 0392: dt=44.800000, rms=0.425 (-0.057%), neg=0, invalid=762
- iter 0, gcam->neg = 16
- after 14 iterations, nbhd size=1, neg = 0
- 0393: dt=179.200000, rms=0.424 (0.217%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 1 iterations, nbhd size=0, neg = 0
- 0394: dt=44.800000, rms=0.424 (0.087%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.424, neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 1 iterations, nbhd size=0, neg = 0
- 0395: dt=58.472727, rms=0.421 (0.577%), neg=0, invalid=762
- 0396: dt=38.400000, rms=0.420 (0.282%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0397: dt=32.000000, rms=0.420 (0.098%), neg=0, invalid=762
- 0398: dt=32.000000, rms=0.419 (0.101%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 4 iterations, nbhd size=0, neg = 0
- 0399: dt=32.000000, rms=0.419 (0.118%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 6 iterations, nbhd size=1, neg = 0
- 0400: dt=32.000000, rms=0.418 (0.134%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 12 iterations, nbhd size=1, neg = 0
- 0401: dt=32.000000, rms=0.418 (0.031%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0402: dt=32.000000, rms=0.417 (0.151%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 7 iterations, nbhd size=1, neg = 0
- 0403: dt=32.000000, rms=0.417 (0.114%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 1 iterations, nbhd size=0, neg = 0
- 0404: dt=32.000000, rms=0.416 (0.114%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 1 iterations, nbhd size=0, neg = 0
- 0405: dt=32.000000, rms=0.416 (0.095%), neg=0, invalid=762
- 0406: dt=38.400000, rms=0.416 (0.034%), neg=0, invalid=762
- 0407: dt=38.400000, rms=0.416 (0.016%), neg=0, invalid=762
- 0408: dt=38.400000, rms=0.416 (0.043%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 3 iterations, nbhd size=0, neg = 0
- 0409: dt=38.400000, rms=0.416 (0.045%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 2 iterations, nbhd size=0, neg = 0
- 0410: dt=38.400000, rms=0.415 (0.052%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0411: dt=38.400000, rms=0.415 (0.038%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 8 iterations, nbhd size=1, neg = 0
- 0412: dt=38.400000, rms=0.415 (0.047%), neg=0, invalid=762
- 0413: dt=38.400000, rms=0.415 (0.040%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.420, neg=0, invalid=762
- 0414: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.420, neg=0, invalid=762
- 0415: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.430, neg=0, invalid=762
- 0416: dt=0.000000, rms=0.430 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.430, neg=0, invalid=762
- 0417: dt=0.000000, rms=0.430 (0.000%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.413, neg=0, invalid=762
- iter 0, gcam->neg = 924
- after 16 iterations, nbhd size=1, neg = 0
- 0418: dt=1.283179, rms=0.402 (2.576%), neg=0, invalid=762
- 0419: dt=0.000013, rms=0.402 (0.000%), neg=0, invalid=762
- 0420: dt=0.000013, rms=0.402 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.402, neg=0, invalid=762
- 0421: dt=0.064000, rms=0.402 (0.027%), neg=0, invalid=762
- 0422: dt=0.028000, rms=0.402 (0.004%), neg=0, invalid=762
- 0423: dt=0.028000, rms=0.402 (-0.000%), neg=0, invalid=762
- writing output transformation to transforms/talairach.m3z...
- GCAMwrite
- mri_ca_register took 2 hours, 50 minutes and 5 seconds.
- mri_ca_register utimesec 11258.416460
- mri_ca_register stimesec 12.754061
- mri_ca_register ru_maxrss 1333964
- mri_ca_register ru_ixrss 0
- mri_ca_register ru_idrss 0
- mri_ca_register ru_isrss 0
- mri_ca_register ru_minflt 6333723
- mri_ca_register ru_majflt 0
- mri_ca_register ru_nswap 0
- mri_ca_register ru_inblock 0
- mri_ca_register ru_oublock 63096
- mri_ca_register ru_msgsnd 0
- mri_ca_register ru_msgrcv 0
- mri_ca_register ru_nsignals 0
- mri_ca_register ru_nvcsw 3489
- mri_ca_register ru_nivcsw 23070
- FSRUNTIME@ mri_ca_register 2.8347 hours 2 threads
- #--------------------------------------
- #@# SubCort Seg Sat Oct 7 20:02:29 CEST 2017
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- sysname Linux
- hostname tars-903
- machine x86_64
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- == Number of threads available to mri_ca_label for OpenMP = 2 ==
- relabeling unlikely voxels with window_size = 9 and prior threshold 0.30
- using Gibbs prior factor = 0.500
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -renormalize_mean 0.500
- -regularize 0.500
- reading 1 input volumes
- reading classifier array from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- reading input volume from norm.mgz
- average std[0] = 7.3
- reading transform from transforms/talairach.m3z
- setting orig areas to linear transform determinant scaled 7.10
- Atlas used for the 3D morph was /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 0 ill-conditioned covariance matrices regularized
- labeling volume...
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.16259 (20)
- mri peak = 0.19032 ( 5)
- Left_Lateral_Ventricle (4): linear fit = 0.25 x + 0.0 (4218 voxels, overlap=0.004)
- Left_Lateral_Ventricle (4): linear fit = 0.40 x + 0.0 (4218 voxels, peak = 5), gca=8.0
- gca peak = 0.17677 (13)
- mri peak = 0.26903 ( 5)
- Right_Lateral_Ventricle (43): linear fit = 0.29 x + 0.0 (6458 voxels, overlap=0.005)
- Right_Lateral_Ventricle (43): linear fit = 0.40 x + 0.0 (6458 voxels, peak = 4), gca=5.2
- gca peak = 0.28129 (95)
- mri peak = 0.09545 (91)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (657 voxels, overlap=1.015)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (657 voxels, peak = 92), gca=91.7
- gca peak = 0.16930 (96)
- mri peak = 0.10544 (96)
- Left_Pallidum (13): linear fit = 1.01 x + 0.0 (908 voxels, overlap=1.007)
- Left_Pallidum (13): linear fit = 1.01 x + 0.0 (908 voxels, peak = 97), gca=97.4
- gca peak = 0.24553 (55)
- mri peak = 0.09632 (57)
- Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (732 voxels, overlap=1.008)
- Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (732 voxels, peak = 55), gca=55.0
- gca peak = 0.30264 (59)
- mri peak = 0.10242 (56)
- Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (1060 voxels, overlap=1.009)
- Left_Hippocampus (17): linear fit = 0.99 x + 0.0 (1060 voxels, peak = 58), gca=58.1
- gca peak = 0.07580 (103)
- mri peak = 0.12259 (104)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43872 voxels, overlap=0.641)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43872 voxels, peak = 103), gca=103.0
- gca peak = 0.07714 (104)
- mri peak = 0.11600 (107)
- Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (47966 voxels, overlap=0.612)
- Left_Cerebral_White_Matter (2): linear fit = 1.01 x + 0.0 (47966 voxels, peak = 106), gca=105.6
- gca peak = 0.09712 (58)
- mri peak = 0.05872 (48)
- Left_Cerebral_Cortex (3): linear fit = 0.80 x + 0.0 (32388 voxels, overlap=0.359)
- Left_Cerebral_Cortex (3): linear fit = 0.80 x + 0.0 (32388 voxels, peak = 46), gca=46.1
- gca peak = 0.11620 (58)
- mri peak = 0.05597 (48)
- Right_Cerebral_Cortex (42): linear fit = 0.82 x + 0.0 (29680 voxels, overlap=0.261)
- Right_Cerebral_Cortex (42): linear fit = 0.82 x + 0.0 (29680 voxels, peak = 48), gca=47.8
- gca peak = 0.30970 (66)
- mri peak = 0.11865 (68)
- Right_Caudate (50): linear fit = 1.00 x + 0.0 (1473 voxels, overlap=1.005)
- Right_Caudate (50): linear fit = 1.00 x + 0.0 (1473 voxels, peak = 66), gca=66.0
- gca peak = 0.15280 (69)
- mri peak = 0.10428 (69)
- Left_Caudate (11): linear fit = 0.93 x + 0.0 (1233 voxels, overlap=0.590)
- Left_Caudate (11): linear fit = 0.93 x + 0.0 (1233 voxels, peak = 64), gca=63.8
- gca peak = 0.13902 (56)
- mri peak = 0.05208 (56)
- Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (24943 voxels, overlap=0.999)
- Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (24943 voxels, peak = 55), gca=55.2
- gca peak = 0.14777 (55)
- mri peak = 0.04856 (52)
- Right_Cerebellum_Cortex (47): linear fit = 0.94 x + 0.0 (21079 voxels, overlap=0.962)
- Right_Cerebellum_Cortex (47): linear fit = 0.94 x + 0.0 (21079 voxels, peak = 52), gca=52.0
- gca peak = 0.16765 (84)
- mri peak = 0.13909 (87)
- Left_Cerebellum_White_Matter (7): linear fit = 1.03 x + 0.0 (6761 voxels, overlap=0.809)
- Left_Cerebellum_White_Matter (7): linear fit = 1.03 x + 0.0 (6761 voxels, peak = 87), gca=86.9
- gca peak = 0.18739 (84)
- mri peak = 0.12778 (88)
- Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (5798 voxels, overlap=0.556)
- Right_Cerebellum_White_Matter (46): linear fit = 1.07 x + 0.0 (5798 voxels, peak = 89), gca=89.5
- gca peak = 0.29869 (57)
- mri peak = 0.08581 (63)
- Left_Amygdala (18): linear fit = 1.10 x + 0.0 (609 voxels, overlap=1.035)
- Left_Amygdala (18): linear fit = 1.10 x + 0.0 (609 voxels, peak = 62), gca=62.4
- gca peak = 0.33601 (57)
- mri peak = 0.10363 (63)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (584 voxels, overlap=1.016)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (584 voxels, peak = 60), gca=59.6
- gca peak = 0.11131 (90)
- mri peak = 0.06978 (90)
- Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4499 voxels, overlap=0.974)
- Left_Thalamus_Proper (10): linear fit = 1.02 x + 0.0 (4499 voxels, peak = 92), gca=92.2
- gca peak = 0.11793 (83)
- mri peak = 0.07297 (89)
- Right_Thalamus_Proper (49): linear fit = 1.04 x + 0.0 (3915 voxels, overlap=0.979)
- Right_Thalamus_Proper (49): linear fit = 1.04 x + 0.0 (3915 voxels, peak = 87), gca=86.7
- gca peak = 0.08324 (81)
- mri peak = 0.06567 (78)
- Left_Putamen (12): linear fit = 0.96 x + 0.0 (2071 voxels, overlap=0.931)
- Left_Putamen (12): linear fit = 0.96 x + 0.0 (2071 voxels, peak = 78), gca=78.2
- gca peak = 0.10360 (77)
- mri peak = 0.07266 (77)
- Right_Putamen (51): linear fit = 0.98 x + 0.0 (2287 voxels, overlap=0.915)
- Right_Putamen (51): linear fit = 0.98 x + 0.0 (2287 voxels, peak = 75), gca=75.1
- gca peak = 0.08424 (78)
- mri peak = 0.08753 (88)
- Brain_Stem (16): linear fit = 1.10 x + 0.0 (13511 voxels, overlap=0.476)
- Brain_Stem (16): linear fit = 1.10 x + 0.0 (13511 voxels, peak = 85), gca=85.4
- gca peak = 0.12631 (89)
- mri peak = 0.06460 (95)
- Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1917 voxels, overlap=0.741)
- Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1917 voxels, peak = 100), gca=100.1
- gca peak = 0.14500 (87)
- mri peak = 0.05793 (98)
- Left_VentralDC (28): linear fit = 1.08 x + 0.0 (1883 voxels, overlap=0.864)
- Left_VentralDC (28): linear fit = 1.08 x + 0.0 (1883 voxels, peak = 94), gca=93.5
- gca peak = 0.14975 (24)
- mri peak = 0.20000 (11)
- gca peak = 0.19357 (14)
- mri peak = 0.15254 (11)
- Fourth_Ventricle (15): linear fit = 0.63 x + 0.0 (472 voxels, overlap=0.403)
- Fourth_Ventricle (15): linear fit = 0.63 x + 0.0 (472 voxels, peak = 9), gca=8.9
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.16825 (27)
- gca peak Left_Thalamus = 1.00000 (94)
- gca peak Third_Ventricle = 0.14975 (24)
- gca peak Fourth_Ventricle = 0.19357 (14)
- gca peak CSF = 0.23379 (36)
- gca peak Left_Accumbens_area = 0.70037 (62)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.75997 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.24655 (23)
- gca peak Right_Accumbens_area = 0.45042 (65)
- gca peak Right_vessel = 0.82168 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.65475 (32)
- gca peak WM_hypointensities = 0.07854 (76)
- gca peak non_WM_hypointensities = 0.08491 (43)
- gca peak Optic_Chiasm = 0.71127 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 0.96 x + 0.0
- estimating mean wm scale to be 1.01 x + 0.0
- estimating mean csf scale to be 0.40 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.30837 ( 7)
- mri peak = 0.19032 ( 5)
- Left_Lateral_Ventricle (4): linear fit = 0.62 x + 0.0 (4218 voxels, overlap=0.716)
- Left_Lateral_Ventricle (4): linear fit = 0.62 x + 0.0 (4218 voxels, peak = 4), gca=4.3
- gca peak = 0.30173 ( 5)
- mri peak = 0.26903 ( 5)
- Right_Lateral_Ventricle (43): linear fit = 0.75 x + 0.0 (6458 voxels, overlap=0.869)
- Right_Lateral_Ventricle (43): linear fit = 0.75 x + 0.0 (6458 voxels, peak = 4), gca=3.7
- gca peak = 0.24968 (91)
- mri peak = 0.09545 (91)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (657 voxels, overlap=1.006)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (657 voxels, peak = 91), gca=90.5
- gca peak = 0.16749 (98)
- mri peak = 0.10544 (96)
- Left_Pallidum (13): linear fit = 0.99 x + 0.0 (908 voxels, overlap=1.005)
- Left_Pallidum (13): linear fit = 0.99 x + 0.0 (908 voxels, peak = 97), gca=96.5
- gca peak = 0.24545 (55)
- mri peak = 0.09632 (57)
- Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (732 voxels, overlap=1.006)
- Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (732 voxels, peak = 55), gca=55.0
- gca peak = 0.30826 (58)
- mri peak = 0.10242 (56)
- Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (1060 voxels, overlap=1.003)
- Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (1060 voxels, peak = 58), gca=58.0
- gca peak = 0.07594 (103)
- mri peak = 0.12259 (104)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43872 voxels, overlap=0.641)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (43872 voxels, peak = 103), gca=103.0
- gca peak = 0.07832 (106)
- mri peak = 0.11600 (107)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (47966 voxels, overlap=0.679)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (47966 voxels, peak = 107), gca=106.5
- gca peak = 0.12278 (46)
- mri peak = 0.05872 (48)
- Left_Cerebral_Cortex (3): linear fit = 1.03 x + 0.0 (32388 voxels, overlap=0.991)
- Left_Cerebral_Cortex (3): linear fit = 1.03 x + 0.0 (32388 voxels, peak = 48), gca=47.6
- gca peak = 0.13765 (48)
- mri peak = 0.05597 (48)
- Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (29680 voxels, overlap=0.992)
- Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (29680 voxels, peak = 47), gca=46.8
- gca peak = 0.30970 (66)
- mri peak = 0.11865 (68)
- Right_Caudate (50): linear fit = 1.00 x + 0.0 (1473 voxels, overlap=1.005)
- Right_Caudate (50): linear fit = 1.00 x + 0.0 (1473 voxels, peak = 66), gca=66.0
- gca peak = 0.13199 (64)
- mri peak = 0.10428 (69)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1233 voxels, overlap=1.000)
- Left_Caudate (11): linear fit = 1.00 x + 0.0 (1233 voxels, peak = 64), gca=64.0
- gca peak = 0.14405 (54)
- mri peak = 0.05208 (56)
- Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (24943 voxels, overlap=1.000)
- Left_Cerebellum_Cortex (8): linear fit = 0.99 x + 0.0 (24943 voxels, peak = 53), gca=53.2
- gca peak = 0.15414 (52)
- mri peak = 0.04856 (52)
- Right_Cerebellum_Cortex (47): linear fit = 0.98 x + 0.0 (21079 voxels, overlap=1.000)
- Right_Cerebellum_Cortex (47): linear fit = 0.98 x + 0.0 (21079 voxels, peak = 51), gca=50.7
- gca peak = 0.15881 (87)
- mri peak = 0.13909 (87)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (6761 voxels, overlap=0.929)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (6761 voxels, peak = 87), gca=87.0
- gca peak = 0.15249 (90)
- mri peak = 0.12778 (88)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (5798 voxels, overlap=0.909)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (5798 voxels, peak = 90), gca=89.6
- gca peak = 0.28917 (64)
- mri peak = 0.08581 (63)
- Left_Amygdala (18): linear fit = 1.00 x + 0.0 (609 voxels, overlap=1.011)
- Left_Amygdala (18): linear fit = 1.00 x + 0.0 (609 voxels, peak = 64), gca=64.0
- gca peak = 0.32225 (60)
- mri peak = 0.10363 (63)
- Right_Amygdala (54): linear fit = 1.02 x + 0.0 (584 voxels, overlap=1.010)
- Right_Amygdala (54): linear fit = 1.02 x + 0.0 (584 voxels, peak = 62), gca=61.5
- gca peak = 0.10559 (92)
- mri peak = 0.06978 (90)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4499 voxels, overlap=0.997)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4499 voxels, peak = 92), gca=91.5
- gca peak = 0.09602 (90)
- mri peak = 0.07297 (89)
- Right_Thalamus_Proper (49): linear fit = 1.02 x + 0.0 (3915 voxels, overlap=0.993)
- Right_Thalamus_Proper (49): linear fit = 1.02 x + 0.0 (3915 voxels, peak = 92), gca=92.2
- gca peak = 0.08891 (78)
- mri peak = 0.06567 (78)
- Left_Putamen (12): linear fit = 1.00 x + 0.0 (2071 voxels, overlap=0.971)
- Left_Putamen (12): linear fit = 1.00 x + 0.0 (2071 voxels, peak = 78), gca=78.0
- gca peak = 0.10523 (75)
- mri peak = 0.07266 (77)
- Right_Putamen (51): linear fit = 1.00 x + 0.0 (2287 voxels, overlap=0.997)
- Right_Putamen (51): linear fit = 1.00 x + 0.0 (2287 voxels, peak = 75), gca=75.0
- gca peak = 0.07780 (86)
- mri peak = 0.08753 (88)
- Brain_Stem (16): linear fit = 1.01 x + 0.0 (13511 voxels, overlap=0.766)
- Brain_Stem (16): linear fit = 1.01 x + 0.0 (13511 voxels, peak = 87), gca=87.3
- gca peak = 0.09850 (100)
- mri peak = 0.06460 (95)
- Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1917 voxels, overlap=0.899)
- Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1917 voxels, peak = 100), gca=100.0
- gca peak = 0.16788 (92)
- mri peak = 0.05793 (98)
- Left_VentralDC (28): linear fit = 1.01 x + 0.0 (1883 voxels, overlap=0.955)
- Left_VentralDC (28): linear fit = 1.01 x + 0.0 (1883 voxels, peak = 93), gca=93.4
- gca peak = 0.33708 (10)
- mri peak = 0.20000 (11)
- gca peak = 0.45928 ( 6)
- mri peak = 0.15254 (11)
- Fourth_Ventricle (15): linear fit = 1.63 x + 0.0 (472 voxels, overlap=0.984)
- Fourth_Ventricle (15): linear fit = 1.63 x + 0.0 (472 voxels, peak = 10), gca=9.8
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.18140 (33)
- gca peak Left_Thalamus = 0.64095 (90)
- gca peak Third_Ventricle = 0.33708 (10)
- gca peak Fourth_Ventricle = 0.45928 ( 6)
- gca peak CSF = 0.26605 (13)
- gca peak Left_Accumbens_area = 0.54646 (57)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.67369 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.25246 (23)
- gca peak Right_Accumbens_area = 0.45042 (65)
- gca peak Right_vessel = 0.77721 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.65560 (13)
- gca peak WM_hypointensities = 0.07418 (77)
- gca peak non_WM_hypointensities = 0.09318 (44)
- gca peak Optic_Chiasm = 0.70814 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.01 x + 0.0
- estimating mean wm scale to be 1.00 x + 0.0
- estimating mean csf scale to be 0.68 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt
- 61733 voxels changed in iteration 0 of unlikely voxel relabeling
- 183 voxels changed in iteration 1 of unlikely voxel relabeling
- 6 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 25849 gm and wm labels changed (%26 to gray, %74 to white out of all changed labels)
- 402 hippocampal voxels changed.
- 0 amygdala voxels changed.
- pass 1: 73561 changed. image ll: -2.132, PF=0.500
- pass 2: 22692 changed. image ll: -2.132, PF=0.500
- pass 3: 8820 changed.
- pass 4: 3675 changed.
- 40353 voxels changed in iteration 0 of unlikely voxel relabeling
- 205 voxels changed in iteration 1 of unlikely voxel relabeling
- 4 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 6264 voxels changed in iteration 0 of unlikely voxel relabeling
- 101 voxels changed in iteration 1 of unlikely voxel relabeling
- 0 voxels changed in iteration 2 of unlikely voxel relabeling
- 5763 voxels changed in iteration 0 of unlikely voxel relabeling
- 84 voxels changed in iteration 1 of unlikely voxel relabeling
- 7 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 4850 voxels changed in iteration 0 of unlikely voxel relabeling
- 31 voxels changed in iteration 1 of unlikely voxel relabeling
- 1 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- MRItoUCHAR: min=0, max=85
- MRItoUCHAR: converting to UCHAR
- writing labeled volume to aseg.auto_noCCseg.mgz
- mri_ca_label utimesec 4270.664760
- mri_ca_label stimesec 1.845719
- mri_ca_label ru_maxrss 2109448
- mri_ca_label ru_ixrss 0
- mri_ca_label ru_idrss 0
- mri_ca_label ru_isrss 0
- mri_ca_label ru_minflt 725915
- mri_ca_label ru_majflt 0
- mri_ca_label ru_nswap 0
- mri_ca_label ru_inblock 63088
- mri_ca_label ru_oublock 528
- mri_ca_label ru_msgsnd 0
- mri_ca_label ru_msgrcv 0
- mri_ca_label ru_nsignals 0
- mri_ca_label ru_nvcsw 279
- mri_ca_label ru_nivcsw 5384
- auto-labeling took 70 minutes and 28 seconds.
- mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/transforms/cc_up.lta 0050731
- will read input aseg from aseg.auto_noCCseg.mgz
- writing aseg with cc labels to aseg.auto.mgz
- will write lta as /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/transforms/cc_up.lta
- reading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aseg.auto_noCCseg.mgz
- reading norm from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/norm.mgz
- 40010 voxels in left wm, 74101 in right wm, xrange [123, 135]
- searching rotation angles z=[-11 3], y=[-10 4]
-
searching scale 1 Z rot -10.9
searching scale 1 Z rot -10.6
searching scale 1 Z rot -10.4
searching scale 1 Z rot -10.1
searching scale 1 Z rot -9.9
searching scale 1 Z rot -9.6
searching scale 1 Z rot -9.4
searching scale 1 Z rot -9.1
searching scale 1 Z rot -8.9
searching scale 1 Z rot -8.6
searching scale 1 Z rot -8.4
searching scale 1 Z rot -8.1
searching scale 1 Z rot -7.9
searching scale 1 Z rot -7.6
searching scale 1 Z rot -7.4
searching scale 1 Z rot -7.1
searching scale 1 Z rot -6.9
searching scale 1 Z rot -6.6
searching scale 1 Z rot -6.4
searching scale 1 Z rot -6.1
searching scale 1 Z rot -5.9
searching scale 1 Z rot -5.6
searching scale 1 Z rot -5.4
searching scale 1 Z rot -5.1
searching scale 1 Z rot -4.9
searching scale 1 Z rot -4.6
searching scale 1 Z rot -4.4
searching scale 1 Z rot -4.1
searching scale 1 Z rot -3.9
searching scale 1 Z rot -3.6
searching scale 1 Z rot -3.4
searching scale 1 Z rot -3.1
searching scale 1 Z rot -2.9
searching scale 1 Z rot -2.6
searching scale 1 Z rot -2.4
searching scale 1 Z rot -2.1
searching scale 1 Z rot -1.9
searching scale 1 Z rot -1.6
searching scale 1 Z rot -1.4
searching scale 1 Z rot -1.1
searching scale 1 Z rot -0.9
searching scale 1 Z rot -0.6
searching scale 1 Z rot -0.4
searching scale 1 Z rot -0.1
searching scale 1 Z rot 0.1
searching scale 1 Z rot 0.4
searching scale 1 Z rot 0.6
searching scale 1 Z rot 0.9
searching scale 1 Z rot 1.1
searching scale 1 Z rot 1.4
searching scale 1 Z rot 1.6
searching scale 1 Z rot 1.9
searching scale 1 Z rot 2.1
searching scale 1 Z rot 2.4
searching scale 1 Z rot 2.6
searching scale 1 Z rot 2.9 global minimum found at slice 129.9, rotations (-3.13, -3.88)
- final transformation (x=129.9, yr=-3.132, zr=-3.876):
- 0.99622 0.06759 -0.05451 -1.47775;
- -0.06749 0.99771 0.00369 45.56281;
- 0.05464 0.00000 0.99851 10.07003;
- 0.00000 0.00000 0.00000 1.00000;
- updating x range to be [126, 130] in xformed coordinates
- best xformed slice 128
- cc center is found at 128 91 111
- eigenvectors:
- 0.00024 -0.00396 0.99999;
- 0.08410 -0.99645 -0.00396;
- 0.99646 0.08410 0.00009;
- error in mid anterior detected - correcting...
- error in mid anterior detected - correcting...
- writing aseg with callosum to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aseg.auto.mgz...
- corpus callosum segmentation took 1.2 minutes
- #--------------------------------------
- #@# Merge ASeg Sat Oct 7 21:14:08 CEST 2017
- cp aseg.auto.mgz aseg.presurf.mgz
- #--------------------------------------------
- #@# Intensity Normalization2 Sat Oct 7 21:14:08 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- using segmentation for initial intensity normalization
- using MR volume brainmask.mgz to mask input volume...
- reading from norm.mgz...
- Reading aseg aseg.presurf.mgz
- normalizing image...
- processing with aseg
- removing outliers in the aseg WM...
- 1385 control points removed
- Building bias image
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 0...
- Smoothing with sigma 8
- Applying bias correction
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 54 (54), valley at 21 (21)
- csf peak at 27, setting threshold to 45
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 52 (52), valley at 20 (20)
- csf peak at 27, setting threshold to 43
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to brain.mgz
- 3D bias adjustment took 3 minutes and 20 seconds.
- #--------------------------------------------
- #@# Mask BFS Sat Oct 7 21:17:30 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz
- threshold mask volume at 5
- DoAbs = 0
- Found 1706172 voxels in mask (pct= 10.17)
- Writing masked volume to brain.finalsurfs.mgz...done.
- #--------------------------------------------
- #@# WM Segmentation Sat Oct 7 21:17:31 CEST 2017
- mri_segment -mprage brain.mgz wm.seg.mgz
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- computing class statistics for intensity windows...
- WM (106.0): 106.2 +- 4.5 [79.0 --> 125.0]
- GM (67.0) : 66.0 +- 9.7 [30.0 --> 95.0]
- setting bottom of white matter range to 75.7
- setting top of gray matter range to 85.3
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- using local geometry to label remaining ambiguous voxels...
- reclassifying voxels using Gaussian border classifier...
- removing voxels with positive offset direction...
- smoothing T1 volume with sigma = 0.250
- removing 1-dimensional structures...
- 3438 sparsely connected voxels removed...
- thickening thin strands....
- 20 segments, 4271 filled
- 448 bright non-wm voxels segmented.
- 1574 diagonally connected voxels added...
- white matter segmentation took 1.4 minutes
- writing output to wm.seg.mgz...
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz
- preserving editing changes in input volume...
- auto filling took 0.64 minutes
- reading wm segmentation from wm.seg.mgz...
- 753 voxels added to wm to prevent paths from MTL structures to cortex
- 3987 additional wm voxels added
- 0 additional wm voxels added
- SEG EDIT: 77315 voxels turned on, 43392 voxels turned off.
- propagating editing to output volume from wm.seg.mgz
- 115,126,128 old 0 new 0
- 115,126,128 old 0 new 0
- writing edited volume to wm.asegedit.mgz....
- mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz
- Iteration Number : 1
- pass 1 (xy+): 24 found - 24 modified | TOTAL: 24
- pass 2 (xy+): 0 found - 24 modified | TOTAL: 24
- pass 1 (xy-): 20 found - 20 modified | TOTAL: 44
- pass 2 (xy-): 0 found - 20 modified | TOTAL: 44
- pass 1 (yz+): 23 found - 23 modified | TOTAL: 67
- pass 2 (yz+): 0 found - 23 modified | TOTAL: 67
- pass 1 (yz-): 44 found - 44 modified | TOTAL: 111
- pass 2 (yz-): 0 found - 44 modified | TOTAL: 111
- pass 1 (xz+): 27 found - 27 modified | TOTAL: 138
- pass 2 (xz+): 0 found - 27 modified | TOTAL: 138
- pass 1 (xz-): 22 found - 22 modified | TOTAL: 160
- pass 2 (xz-): 0 found - 22 modified | TOTAL: 160
- Iteration Number : 1
- pass 1 (+++): 10 found - 10 modified | TOTAL: 10
- pass 2 (+++): 0 found - 10 modified | TOTAL: 10
- pass 1 (+++): 13 found - 13 modified | TOTAL: 23
- pass 2 (+++): 0 found - 13 modified | TOTAL: 23
- pass 1 (+++): 11 found - 11 modified | TOTAL: 34
- pass 2 (+++): 0 found - 11 modified | TOTAL: 34
- pass 1 (+++): 14 found - 14 modified | TOTAL: 48
- pass 2 (+++): 0 found - 14 modified | TOTAL: 48
- Iteration Number : 1
- pass 1 (++): 58 found - 58 modified | TOTAL: 58
- pass 2 (++): 0 found - 58 modified | TOTAL: 58
- pass 1 (+-): 71 found - 71 modified | TOTAL: 129
- pass 2 (+-): 0 found - 71 modified | TOTAL: 129
- pass 1 (--): 78 found - 78 modified | TOTAL: 207
- pass 2 (--): 0 found - 78 modified | TOTAL: 207
- pass 1 (-+): 80 found - 80 modified | TOTAL: 287
- pass 2 (-+): 0 found - 80 modified | TOTAL: 287
- Iteration Number : 2
- pass 1 (xy+): 2 found - 2 modified | TOTAL: 2
- pass 2 (xy+): 0 found - 2 modified | TOTAL: 2
- pass 1 (xy-): 4 found - 4 modified | TOTAL: 6
- pass 2 (xy-): 0 found - 4 modified | TOTAL: 6
- pass 1 (yz+): 6 found - 6 modified | TOTAL: 12
- pass 2 (yz+): 0 found - 6 modified | TOTAL: 12
- pass 1 (yz-): 5 found - 5 modified | TOTAL: 17
- pass 2 (yz-): 0 found - 5 modified | TOTAL: 17
- pass 1 (xz+): 4 found - 4 modified | TOTAL: 21
- pass 2 (xz+): 0 found - 4 modified | TOTAL: 21
- pass 1 (xz-): 2 found - 2 modified | TOTAL: 23
- pass 2 (xz-): 0 found - 2 modified | TOTAL: 23
- Iteration Number : 2
- pass 1 (+++): 3 found - 3 modified | TOTAL: 3
- pass 2 (+++): 0 found - 3 modified | TOTAL: 3
- pass 1 (+++): 1 found - 1 modified | TOTAL: 4
- pass 2 (+++): 0 found - 1 modified | TOTAL: 4
- pass 1 (+++): 0 found - 0 modified | TOTAL: 4
- pass 1 (+++): 0 found - 0 modified | TOTAL: 4
- Iteration Number : 2
- pass 1 (++): 2 found - 2 modified | TOTAL: 2
- pass 2 (++): 0 found - 2 modified | TOTAL: 2
- pass 1 (+-): 3 found - 3 modified | TOTAL: 5
- pass 2 (+-): 0 found - 3 modified | TOTAL: 5
- pass 1 (--): 2 found - 2 modified | TOTAL: 7
- pass 2 (--): 0 found - 2 modified | TOTAL: 7
- pass 1 (-+): 2 found - 2 modified | TOTAL: 9
- pass 2 (-+): 0 found - 2 modified | TOTAL: 9
- Iteration Number : 3
- pass 1 (xy+): 1 found - 1 modified | TOTAL: 1
- pass 2 (xy+): 0 found - 1 modified | TOTAL: 1
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 1
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 2
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 2
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 2
- pass 1 (xz+): 1 found - 1 modified | TOTAL: 3
- pass 2 (xz+): 0 found - 1 modified | TOTAL: 3
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 3
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 2 found - 2 modified | TOTAL: 2
- pass 2 (+++): 0 found - 2 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 3
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 1 found - 1 modified | TOTAL: 1
- pass 2 (--): 0 found - 1 modified | TOTAL: 1
- pass 1 (-+): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 4
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 537 (out of 636716: 0.084339)
- binarizing input wm segmentation...
- Ambiguous edge configurations...
- mri_pretess done
- #--------------------------------------------
- #@# Fill Sat Oct 7 21:19:37 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz
- logging cutting plane coordinates to ../scripts/ponscc.cut.log...
- INFO: Using transforms/talairach.lta and its offset for Talairach volume ...
- using segmentation aseg.auto_noCCseg.mgz...
- reading input volume...done.
- searching for cutting planes...voxel to talairach voxel transform
- 1.04914 0.06351 -0.05127 -10.67279;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69234;
- 0.00000 0.00000 0.00000 1.00000;
- voxel to talairach voxel transform
- 1.04914 0.06351 -0.05127 -10.67279;
- -0.07306 1.11060 0.05057 5.60037;
- 0.06812 -0.05398 0.95788 -3.69234;
- 0.00000 0.00000 0.00000 1.00000;
- reading segmented volume aseg.auto_noCCseg.mgz...
- Looking for area (min, max) = (350, 1400)
- area[0] = 1607 (min = 350, max = 1400), aspect = 0.61 (min = 0.10, max = 0.75)
- need search nearby
- using seed (126, 115, 93), TAL = (2.0, -35.0, 13.0)
- talairach voxel to voxel transform
- 0.94611 -0.05151 0.05336 10.58311;
- 0.06514 0.89456 -0.04374 -4.47618;
- -0.06361 0.05407 1.03771 2.84987;
- 0.00000 0.00000 0.00000 1.00000;
- segmentation indicates cc at (126, 115, 93) --> (2.0, -35.0, 13.0)
- done.
- writing output to filled.mgz...
- filling took 0.8 minutes
- talairach cc position changed to (2.00, -35.00, 13.00)
- Erasing brainstem...done.
- seed_search_size = 9, min_neighbors = 5
- search rh wm seed point around talairach space:(20.00, -35.00, 13.00) SRC: (111.80, 101.37, 98.71)
- search lh wm seed point around talairach space (-16.00, -35.00, 13.00), SRC: (145.86, 103.71, 96.42)
- compute mri_fill using aseg
- Erasing Brain Stem and Cerebellum ...
- Define left and right masks using aseg:
- Building Voronoi diagram ...
- Using the Voronoi diagram to separate WM into two hemispheres ...
- Find the largest connected component for each hemisphere ...
- #--------------------------------------------
- #@# Tessellate lh Sat Oct 7 21:20:24 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz
- Iteration Number : 1
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 3 found - 3 modified | TOTAL: 3
- pass 2 (xy-): 0 found - 3 modified | TOTAL: 3
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 4
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 4
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 4
- pass 1 (xz+): 2 found - 2 modified | TOTAL: 6
- pass 2 (xz+): 0 found - 2 modified | TOTAL: 6
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 6
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 1
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 2 found - 2 modified | TOTAL: 2
- pass 2 (+-): 0 found - 2 modified | TOTAL: 2
- pass 1 (--): 0 found - 0 modified | TOTAL: 2
- pass 1 (-+): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 8 (out of 303327: 0.002637)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 30: 29 vertices, 40 faces
- slice 40: 3686 vertices, 3872 faces
- slice 50: 11059 vertices, 11333 faces
- slice 60: 20048 vertices, 20375 faces
- slice 70: 30738 vertices, 31159 faces
- slice 80: 41881 vertices, 42208 faces
- slice 90: 51905 vertices, 52269 faces
- slice 100: 64289 vertices, 64715 faces
- slice 110: 76610 vertices, 77026 faces
- slice 120: 89219 vertices, 89659 faces
- slice 130: 100845 vertices, 101229 faces
- slice 140: 111625 vertices, 111957 faces
- slice 150: 120553 vertices, 120844 faces
- slice 160: 128936 vertices, 129255 faces
- slice 170: 136984 vertices, 137238 faces
- slice 180: 143591 vertices, 143845 faces
- slice 190: 148784 vertices, 148979 faces
- slice 200: 151791 vertices, 151889 faces
- slice 210: 152278 vertices, 152306 faces
- slice 220: 152278 vertices, 152306 faces
- slice 230: 152278 vertices, 152306 faces
- slice 240: 152278 vertices, 152306 faces
- slice 250: 152278 vertices, 152306 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/lh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess255.mgz
- mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix
- counting number of connected components...
- 152278 voxel in cpt #1: X=-28 [v=152278,e=456918,f=304612] located at (-28.805632, -18.051867, 25.607428)
- For the whole surface: X=-28 [v=152278,e=456918,f=304612]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Tessellate rh Sat Oct 7 21:20:30 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz
- Iteration Number : 1
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 1
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz-): 1 found - 1 modified | TOTAL: 2
- pass 2 (yz-): 0 found - 1 modified | TOTAL: 2
- pass 1 (xz+): 4 found - 4 modified | TOTAL: 6
- pass 2 (xz+): 0 found - 4 modified | TOTAL: 6
- pass 1 (xz-): 1 found - 1 modified | TOTAL: 7
- pass 2 (xz-): 0 found - 1 modified | TOTAL: 7
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 1
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 2 found - 2 modified | TOTAL: 2
- pass 2 (--): 0 found - 2 modified | TOTAL: 2
- pass 1 (-+): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 9 (out of 309601: 0.002907)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 40: 1914 vertices, 2035 faces
- slice 50: 7491 vertices, 7718 faces
- slice 60: 15012 vertices, 15293 faces
- slice 70: 24205 vertices, 24593 faces
- slice 80: 35034 vertices, 35386 faces
- slice 90: 45658 vertices, 46031 faces
- slice 100: 56646 vertices, 57023 faces
- slice 110: 68859 vertices, 69276 faces
- slice 120: 82061 vertices, 82505 faces
- slice 130: 94368 vertices, 94794 faces
- slice 140: 105929 vertices, 106358 faces
- slice 150: 116217 vertices, 116545 faces
- slice 160: 124546 vertices, 124824 faces
- slice 170: 132784 vertices, 133069 faces
- slice 180: 140287 vertices, 140533 faces
- slice 190: 146449 vertices, 146665 faces
- slice 200: 150886 vertices, 151012 faces
- slice 210: 152042 vertices, 152050 faces
- slice 220: 152042 vertices, 152050 faces
- slice 230: 152042 vertices, 152050 faces
- slice 240: 152042 vertices, 152050 faces
- slice 250: 152042 vertices, 152050 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/rh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess127.mgz
- mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix
- counting number of connected components...
- 152042 voxel in cpt #1: X=-8 [v=152042,e=456150,f=304100] located at (26.480446, -12.698643, 29.411926)
- For the whole surface: X=-8 [v=152042,e=456150,f=304100]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Smooth1 lh Sat Oct 7 21:20:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- #--------------------------------------------
- #@# Smooth1 rh Sat Oct 7 21:20:37 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- Waiting for PID 31320 of (31320 31323) to complete...
- Waiting for PID 31323 of (31320 31323) to complete...
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (31320 31323) completed and logs appended.
- #--------------------------------------------
- #@# Inflation1 lh Sat Oct 7 21:20:44 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- #--------------------------------------------
- #@# Inflation1 rh Sat Oct 7 21:20:44 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Waiting for PID 31365 of (31365 31368) to complete...
- Waiting for PID 31368 of (31365 31368) to complete...
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- Not saving sulc
- Reading ../surf/lh.smoothwm.nofix
- avg radius = 49.1 mm, total surface area = 81103 mm^2
- writing inflated surface to ../surf/lh.inflated.nofix
- inflation took 1.0 minutes
-
step 000: RMS=0.150 (target=0.015)
step 005: RMS=0.113 (target=0.015)
step 010: RMS=0.083 (target=0.015)
step 015: RMS=0.068 (target=0.015)
step 020: RMS=0.057 (target=0.015)
step 025: RMS=0.050 (target=0.015)
step 030: RMS=0.044 (target=0.015)
step 035: RMS=0.040 (target=0.015)
step 040: RMS=0.037 (target=0.015)
step 045: RMS=0.035 (target=0.015)
step 050: RMS=0.034 (target=0.015)
step 055: RMS=0.033 (target=0.015)
step 060: RMS=0.033 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 62.370518
- mris_inflate stimesec 0.156976
- mris_inflate ru_maxrss 222092
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 31953
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 0
- mris_inflate ru_oublock 10728
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 6913
- mris_inflate ru_nivcsw 7281
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Not saving sulc
- Reading ../surf/rh.smoothwm.nofix
- avg radius = 49.2 mm, total surface area = 80911 mm^2
- writing inflated surface to ../surf/rh.inflated.nofix
- inflation took 1.0 minutes
-
step 000: RMS=0.150 (target=0.015)
step 005: RMS=0.113 (target=0.015)
step 010: RMS=0.083 (target=0.015)
step 015: RMS=0.067 (target=0.015)
step 020: RMS=0.057 (target=0.015)
step 025: RMS=0.049 (target=0.015)
step 030: RMS=0.044 (target=0.015)
step 035: RMS=0.039 (target=0.015)
step 040: RMS=0.035 (target=0.015)
step 045: RMS=0.033 (target=0.015)
step 050: RMS=0.032 (target=0.015)
step 055: RMS=0.031 (target=0.015)
step 060: RMS=0.031 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 62.273532
- mris_inflate stimesec 0.171973
- mris_inflate ru_maxrss 221812
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 31882
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 10696
- mris_inflate ru_oublock 10712
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 7351
- mris_inflate ru_nivcsw 7013
- PIDs (31365 31368) completed and logs appended.
- #--------------------------------------------
- #@# QSphere lh Sat Oct 7 21:21:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- #--------------------------------------------
- #@# QSphere rh Sat Oct 7 21:21:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- Waiting for PID 31443 of (31443 31446) to complete...
- Waiting for PID 31446 of (31443 31446) to complete...
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 0.93 +- 0.54 (0.00-->7.46) (max @ vno 53743 --> 54920)
- face area 0.02 +- 0.03 (-0.06-->0.65)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.287...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.292, avgs=0
- 005/300: dt: 0.9000, rms radial error=177.032, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.474, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.738, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.898, avgs=0
- 025/300: dt: 0.9000, rms radial error=174.001, avgs=0
- 030/300: dt: 0.9000, rms radial error=173.074, avgs=0
- 035/300: dt: 0.9000, rms radial error=172.131, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.180, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.228, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.278, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.332, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.390, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.452, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.520, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.592, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.669, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.751, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.838, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.930, avgs=0
- 100/300: dt: 0.9000, rms radial error=160.027, avgs=0
- 105/300: dt: 0.9000, rms radial error=159.129, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.236, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.347, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.464, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.585, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.712, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.843, avgs=0
- 140/300: dt: 0.9000, rms radial error=152.979, avgs=0
- 145/300: dt: 0.9000, rms radial error=152.119, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.265, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.415, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.569, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.729, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.893, avgs=0
- 175/300: dt: 0.9000, rms radial error=147.061, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.235, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.413, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.595, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.782, avgs=0
- 200/300: dt: 0.9000, rms radial error=142.974, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.170, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.371, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.576, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.786, avgs=0
- 225/300: dt: 0.9000, rms radial error=139.000, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.219, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.442, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.669, avgs=0
- 245/300: dt: 0.9000, rms radial error=135.901, avgs=0
- 250/300: dt: 0.9000, rms radial error=135.137, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.377, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.622, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.871, avgs=0
- 270/300: dt: 0.9000, rms radial error=132.124, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.381, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.642, avgs=0
- 285/300: dt: 0.9000, rms radial error=129.908, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.177, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.451, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.729, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 18223.30
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00014
- epoch 2 (K=40.0), pass 1, starting sse = 3181.76
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00007
- epoch 3 (K=160.0), pass 1, starting sse = 337.34
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.10/12 = 0.00797
- epoch 4 (K=640.0), pass 1, starting sse = 17.45
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.22/20 = 0.01116
- final distance error %26.40
- writing spherical brain to ../surf/lh.qsphere.nofix
- spherical transformation took 0.11 hours
- mris_sphere utimesec 408.151951
- mris_sphere stimesec 0.277957
- mris_sphere ru_maxrss 222304
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 32004
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 10712
- mris_sphere ru_oublock 10752
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 9484
- mris_sphere ru_nivcsw 30080
- FSRUNTIME@ mris_sphere 0.1135 hours 1 threads
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 0.93 +- 0.53 (0.00-->6.32) (max @ vno 108011 --> 108012)
- face area 0.02 +- 0.03 (-0.05-->0.53)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.288...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.112, avgs=0
- 005/300: dt: 0.9000, rms radial error=176.851, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.292, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.556, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.719, avgs=0
- 025/300: dt: 0.9000, rms radial error=173.824, avgs=0
- 030/300: dt: 0.9000, rms radial error=172.903, avgs=0
- 035/300: dt: 0.9000, rms radial error=171.965, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.019, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.071, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.124, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.180, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.239, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.302, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.370, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.442, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.520, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.602, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.689, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.781, avgs=0
- 100/300: dt: 0.9000, rms radial error=159.878, avgs=0
- 105/300: dt: 0.9000, rms radial error=158.980, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.087, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.198, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.315, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.436, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.562, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.693, avgs=0
- 140/300: dt: 0.9000, rms radial error=152.828, avgs=0
- 145/300: dt: 0.9000, rms radial error=151.968, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.113, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.263, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.418, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.577, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.741, avgs=0
- 175/300: dt: 0.9000, rms radial error=146.910, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.083, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.261, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.443, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.630, avgs=0
- 200/300: dt: 0.9000, rms radial error=142.821, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.017, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.217, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.422, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.631, avgs=0
- 225/300: dt: 0.9000, rms radial error=138.844, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.062, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.284, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.510, avgs=0
- 245/300: dt: 0.9000, rms radial error=135.741, avgs=0
- 250/300: dt: 0.9000, rms radial error=134.976, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.216, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.459, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.707, avgs=0
- 270/300: dt: 0.9000, rms radial error=131.959, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.215, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.475, avgs=0
- 285/300: dt: 0.9000, rms radial error=129.740, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.009, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.281, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.558, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 18145.81
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00015
- epoch 2 (K=40.0), pass 1, starting sse = 3134.79
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00007
- epoch 3 (K=160.0), pass 1, starting sse = 329.98
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.09/11 = 0.00813
- epoch 4 (K=640.0), pass 1, starting sse = 16.42
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.32/22 = 0.01441
- final distance error %26.33
- writing spherical brain to ../surf/rh.qsphere.nofix
- spherical transformation took 0.11 hours
- mris_sphere utimesec 411.541436
- mris_sphere stimesec 0.278957
- mris_sphere ru_maxrss 222012
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 31931
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 10696
- mris_sphere ru_oublock 10736
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 9574
- mris_sphere ru_nivcsw 30169
- FSRUNTIME@ mris_sphere 0.1141 hours 1 threads
- PIDs (31443 31446) completed and logs appended.
- #--------------------------------------------
- #@# Fix Topology Copy lh Sat Oct 7 21:28:38 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- cp ../surf/lh.orig.nofix ../surf/lh.orig
- cp ../surf/lh.inflated.nofix ../surf/lh.inflated
- #--------------------------------------------
- #@# Fix Topology Copy rh Sat Oct 7 21:28:38 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- cp ../surf/rh.orig.nofix ../surf/rh.orig
- cp ../surf/rh.inflated.nofix ../surf/rh.inflated
- #@# Fix Topology lh Sat Oct 7 21:28:38 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050731 lh
- #@# Fix Topology rh Sat Oct 7 21:28:38 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050731 rh
- Waiting for PID 32066 of (32066 32069) to complete...
- Waiting for PID 32069 of (32066 32069) to complete...
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050731 lh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-28 (nv=152278, nf=304612, ne=456918, g=15)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 9 iterations
- marking ambiguous vertices...
- 2707 ambiguous faces found in tessellation
- segmenting defects...
- 19 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- -merging segment 12 into 11
- 18 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.6378 (-4.8189)
- -vertex loglikelihood: -6.4447 (-3.2223)
- -normal dot loglikelihood: -3.6436 (-3.6436)
- -quad curv loglikelihood: -6.4461 (-3.2230)
- Total Loglikelihood : -26.1721
- CORRECTING DEFECT 0 (vertices=9, convex hull=19, v0=52682)
- After retessellation of defect 0 (v0=52682), euler #=-15 (150651,451402,300736) : difference with theory (-15) = 0
- CORRECTING DEFECT 1 (vertices=130, convex hull=154, v0=56236)
- After retessellation of defect 1 (v0=56236), euler #=-14 (150674,451542,300854) : difference with theory (-14) = 0
- CORRECTING DEFECT 2 (vertices=20, convex hull=32, v0=64998)
- After retessellation of defect 2 (v0=64998), euler #=-13 (150679,451568,300876) : difference with theory (-13) = 0
- CORRECTING DEFECT 3 (vertices=219, convex hull=70, v0=78940)
- After retessellation of defect 3 (v0=78940), euler #=-12 (150712,451698,300974) : difference with theory (-12) = 0
- CORRECTING DEFECT 4 (vertices=33, convex hull=80, v0=83998)
- After retessellation of defect 4 (v0=83998), euler #=-11 (150730,451785,301044) : difference with theory (-11) = 0
- CORRECTING DEFECT 5 (vertices=5, convex hull=27, v0=85181)
- After retessellation of defect 5 (v0=85181), euler #=-10 (150732,451799,301057) : difference with theory (-10) = 0
- CORRECTING DEFECT 6 (vertices=39, convex hull=59, v0=97509)
- After retessellation of defect 6 (v0=97509), euler #=-9 (150741,451850,301100) : difference with theory (-9) = 0
- CORRECTING DEFECT 7 (vertices=68, convex hull=32, v0=98422)
- After retessellation of defect 7 (v0=98422), euler #=-9 (150746,451885,301130) : difference with theory (-8) = 1
- CORRECTING DEFECT 8 (vertices=60, convex hull=38, v0=100262)
- After retessellation of defect 8 (v0=100262), euler #=-8 (150758,451937,301171) : difference with theory (-7) = 1
- CORRECTING DEFECT 9 (vertices=20, convex hull=28, v0=101733)
- After retessellation of defect 9 (v0=101733), euler #=-7 (150764,451964,301193) : difference with theory (-6) = 1
- CORRECTING DEFECT 10 (vertices=46, convex hull=77, v0=104845)
- After retessellation of defect 10 (v0=104845), euler #=-6 (150774,452020,301240) : difference with theory (-5) = 1
- CORRECTING DEFECT 11 (vertices=604, convex hull=228, v0=104968)
- After retessellation of defect 11 (v0=104968), euler #=-4 (150817,452266,301445) : difference with theory (-4) = 0
- CORRECTING DEFECT 12 (vertices=13, convex hull=28, v0=109349)
- After retessellation of defect 12 (v0=109349), euler #=-3 (150819,452280,301458) : difference with theory (-3) = 0
- CORRECTING DEFECT 13 (vertices=106, convex hull=60, v0=114948)
- After retessellation of defect 13 (v0=114948), euler #=-2 (150839,452364,301523) : difference with theory (-2) = 0
- CORRECTING DEFECT 14 (vertices=142, convex hull=110, v0=120341)
- After retessellation of defect 14 (v0=120341), euler #=-1 (150878,452547,301668) : difference with theory (-1) = 0
- CORRECTING DEFECT 15 (vertices=37, convex hull=80, v0=122476)
- After retessellation of defect 15 (v0=122476), euler #=0 (150897,452638,301741) : difference with theory (0) = 0
- CORRECTING DEFECT 16 (vertices=48, convex hull=59, v0=132375)
- After retessellation of defect 16 (v0=132375), euler #=1 (150908,452697,301790) : difference with theory (1) = 0
- CORRECTING DEFECT 17 (vertices=28, convex hull=52, v0=149125)
- After retessellation of defect 17 (v0=149125), euler #=2 (150920,452754,301836) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.88 +- 0.21 (0.07-->5.59) (max @ vno 58788 --> 65076)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.88 +- 0.21 (0.07-->5.59) (max @ vno 58788 --> 65076)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 82 mutations (38.9%), 129 crossovers (61.1%), 183 vertices were eliminated
- building final representation...
- 1358 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=150920, nf=301836, ne=452754, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 17.1 minutes
- 0 defective edges
- removing intersecting faces
- 000: 183 intersecting
- 001: 19 intersecting
- mris_fix_topology utimesec 1024.734216
- mris_fix_topology stimesec 0.265959
- mris_fix_topology ru_maxrss 469440
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 55198
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 21424
- mris_fix_topology ru_oublock 14328
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 654
- mris_fix_topology ru_nivcsw 3315
- FSRUNTIME@ mris_fix_topology lh 0.2846 hours 1 threads
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050731 rh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-8 (nv=152042, nf=304100, ne=456150, g=5)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 7 iterations
- marking ambiguous vertices...
- 1652 ambiguous faces found in tessellation
- segmenting defects...
- 18 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- -merging segment 14 into 13
- 17 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.6357 (-4.8179)
- -vertex loglikelihood: -6.5657 (-3.2829)
- -normal dot loglikelihood: -3.6745 (-3.6745)
- -quad curv loglikelihood: -6.4199 (-3.2100)
- Total Loglikelihood : -26.2959
- CORRECTING DEFECT 0 (vertices=5, convex hull=38, v0=12950)
- After retessellation of defect 0 (v0=12950), euler #=-15 (151031,452750,301704) : difference with theory (-14) = 1
- CORRECTING DEFECT 1 (vertices=169, convex hull=75, v0=19237)
- After retessellation of defect 1 (v0=19237), euler #=-14 (151065,452882,301803) : difference with theory (-13) = 1
- CORRECTING DEFECT 2 (vertices=103, convex hull=50, v0=61501)
- After retessellation of defect 2 (v0=61501), euler #=-13 (151073,452926,301840) : difference with theory (-12) = 1
- CORRECTING DEFECT 3 (vertices=9, convex hull=19, v0=68574)
- After retessellation of defect 3 (v0=68574), euler #=-12 (151074,452934,301848) : difference with theory (-11) = 1
- CORRECTING DEFECT 4 (vertices=20, convex hull=26, v0=71098)
- After retessellation of defect 4 (v0=71098), euler #=-11 (151076,452948,301861) : difference with theory (-10) = 1
- CORRECTING DEFECT 5 (vertices=75, convex hull=97, v0=76318)
- After retessellation of defect 5 (v0=76318), euler #=-10 (151089,453025,301926) : difference with theory (-9) = 1
- CORRECTING DEFECT 6 (vertices=194, convex hull=62, v0=88877)
- After retessellation of defect 6 (v0=88877), euler #=-9 (151118,453140,302013) : difference with theory (-8) = 1
- CORRECTING DEFECT 7 (vertices=12, convex hull=26, v0=97575)
- After retessellation of defect 7 (v0=97575), euler #=-8 (151121,453156,302027) : difference with theory (-7) = 1
- CORRECTING DEFECT 8 (vertices=36, convex hull=61, v0=97589)
- After retessellation of defect 8 (v0=97589), euler #=-7 (151140,453240,302093) : difference with theory (-6) = 1
- CORRECTING DEFECT 9 (vertices=9, convex hull=20, v0=97633)
- After retessellation of defect 9 (v0=97633), euler #=-6 (151144,453259,302109) : difference with theory (-5) = 1
- CORRECTING DEFECT 10 (vertices=58, convex hull=28, v0=100767)
- After retessellation of defect 10 (v0=100767), euler #=-5 (151151,453293,302137) : difference with theory (-4) = 1
- CORRECTING DEFECT 11 (vertices=97, convex hull=56, v0=102184)
- After retessellation of defect 11 (v0=102184), euler #=-4 (151160,453345,302181) : difference with theory (-3) = 1
- CORRECTING DEFECT 12 (vertices=82, convex hull=33, v0=105449)
- After retessellation of defect 12 (v0=105449), euler #=-3 (151169,453388,302216) : difference with theory (-2) = 1
- CORRECTING DEFECT 13 (vertices=14, convex hull=72, v0=138009)
- After retessellation of defect 13 (v0=138009), euler #=-1 (151175,453437,302261) : difference with theory (-1) = 0
- CORRECTING DEFECT 14 (vertices=54, convex hull=87, v0=143095)
- After retessellation of defect 14 (v0=143095), euler #=0 (151208,453572,302364) : difference with theory (0) = 0
- CORRECTING DEFECT 15 (vertices=5, convex hull=23, v0=144046)
- After retessellation of defect 15 (v0=144046), euler #=1 (151210,453584,302375) : difference with theory (1) = 0
- CORRECTING DEFECT 16 (vertices=71, convex hull=91, v0=145852)
- After retessellation of defect 16 (v0=145852), euler #=2 (151230,453684,302456) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.88 +- 0.21 (0.04-->5.96) (max @ vno 75998 --> 80109)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.88 +- 0.21 (0.04-->5.96) (max @ vno 75998 --> 80109)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 70 mutations (34.5%), 133 crossovers (65.5%), 46 vertices were eliminated
- building final representation...
- 812 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=151230, nf=302456, ne=453684, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 11.5 minutes
- 0 defective edges
- removing intersecting faces
- 000: 81 intersecting
- 001: 2 intersecting
- mris_fix_topology utimesec 691.549868
- mris_fix_topology stimesec 0.259960
- mris_fix_topology ru_maxrss 467624
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 54424
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 10696
- mris_fix_topology ru_oublock 14328
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 346
- mris_fix_topology ru_nivcsw 2294
- FSRUNTIME@ mris_fix_topology rh 0.1923 hours 1 threads
- PIDs (32066 32069) completed and logs appended.
- mris_euler_number ../surf/lh.orig
- euler # = v-e+f = 2g-2: 150920 - 452754 + 301836 = 2 --> 0 holes
- F =2V-4: 301836 = 301840-4 (0)
- 2E=3F: 905508 = 905508 (0)
- total defect index = 0
- mris_euler_number ../surf/rh.orig
- euler # = v-e+f = 2g-2: 151230 - 453684 + 302456 = 2 --> 0 holes
- F =2V-4: 302456 = 302460-4 (0)
- 2E=3F: 907368 = 907368 (0)
- total defect index = 0
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_remove_intersection ../surf/lh.orig ../surf/lh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 37 intersecting
- writing corrected surface to ../surf/lh.orig
- rm ../surf/lh.inflated
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_remove_intersection ../surf/rh.orig ../surf/rh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 13 intersecting
- writing corrected surface to ../surf/rh.orig
- rm ../surf/rh.inflated
- #--------------------------------------------
- #@# Make White Surf lh Sat Oct 7 21:45:54 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050731 lh
- #--------------------------------------------
- #@# Make White Surf rh Sat Oct 7 21:45:54 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050731 rh
- Waiting for PID 641 of (641 644) to complete...
- Waiting for PID 644 of (641 644) to complete...
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050731 lh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- 18201 bright wm thresholded.
- 510 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.orig...
- computing class statistics...
- border white: 279703 voxels (1.67%)
- border gray 316576 voxels (1.89%)
- WM (98.0): 97.8 +- 9.6 [70.0 --> 110.0]
- GM (63.0) : 63.2 +- 11.4 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 45.6 (was 70)
- setting MAX_BORDER_WHITE to 112.6 (was 105)
- setting MIN_BORDER_WHITE to 57.0 (was 85)
- setting MAX_CSF to 34.2 (was 40)
- setting MAX_GRAY to 93.4 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 45.6 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 22.8 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.82 +- 0.21 (0.05-->2.82) (max @ vno 120474 --> 123747)
- face area 0.28 +- 0.12 (0.00-->1.57)
- mean absolute distance = 0.60 +- 0.70
- 3435 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=103+-4.3, GM=57+-8.7
- mean inside = 92.2, mean outside = 68.2
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=73.3, 56 (56) missing vertices, mean dist 0.3 [0.4 (%34.7)->0.7 (%65.3))]
- %75 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.92 +- 0.24 (0.08-->3.95) (max @ vno 78740 --> 150691)
- face area 0.28 +- 0.12 (0.00-->1.74)
- mean absolute distance = 0.24 +- 0.43
- 1977 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=5767548.0, rms=13.361
- 001: dt: 0.5000, sse=3193278.2, rms=9.481 (29.037%)
- 002: dt: 0.5000, sse=2069624.5, rms=7.154 (24.550%)
- 003: dt: 0.5000, sse=1517803.4, rms=5.664 (20.829%)
- 004: dt: 0.5000, sse=1285267.4, rms=4.898 (13.513%)
- 005: dt: 0.5000, sse=1187888.4, rms=4.536 (7.403%)
- 006: dt: 0.5000, sse=1149317.5, rms=4.384 (3.342%)
- 007: dt: 0.5000, sse=1126591.0, rms=4.288 (2.191%)
- rms = 4.25, time step reduction 1 of 3 to 0.250...
- 008: dt: 0.5000, sse=1117587.0, rms=4.250 (0.898%)
- 009: dt: 0.2500, sse=797616.9, rms=2.552 (39.950%)
- 010: dt: 0.2500, sse=730734.8, rms=2.035 (20.272%)
- 011: dt: 0.2500, sse=713091.2, rms=1.873 (7.930%)
- 012: dt: 0.2500, sse=702902.6, rms=1.773 (5.332%)
- rms = 1.72, time step reduction 2 of 3 to 0.125...
- 013: dt: 0.2500, sse=698325.9, rms=1.723 (2.818%)
- 014: dt: 0.1250, sse=679466.1, rms=1.512 (12.237%)
- rms = 1.49, time step reduction 3 of 3 to 0.062...
- 015: dt: 0.1250, sse=677290.4, rms=1.486 (1.719%)
- positioning took 1.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=76.4, 68 (6) missing vertices, mean dist -0.1 [0.3 (%75.1)->0.2 (%24.9))]
- %80 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.91 +- 0.24 (0.14-->4.08) (max @ vno 78740 --> 150691)
- face area 0.35 +- 0.15 (0.00-->2.56)
- mean absolute distance = 0.19 +- 0.32
- 2805 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1438104.1, rms=4.811
- 016: dt: 0.5000, sse=1116120.4, rms=3.441 (28.488%)
- rms = 4.05, time step reduction 1 of 3 to 0.250...
- 017: dt: 0.2500, sse=911580.6, rms=2.218 (35.533%)
- 018: dt: 0.2500, sse=849517.4, rms=1.664 (24.973%)
- 019: dt: 0.2500, sse=826994.6, rms=1.404 (15.611%)
- rms = 1.37, time step reduction 2 of 3 to 0.125...
- 020: dt: 0.2500, sse=831486.6, rms=1.366 (2.755%)
- 021: dt: 0.1250, sse=813490.2, rms=1.231 (9.829%)
- rms = 1.22, time step reduction 3 of 3 to 0.062...
- 022: dt: 0.1250, sse=812634.0, rms=1.218 (1.073%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=78.9, 84 (4) missing vertices, mean dist -0.1 [0.2 (%72.7)->0.2 (%27.3))]
- %86 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.91 +- 0.24 (0.07-->4.08) (max @ vno 78740 --> 150691)
- face area 0.35 +- 0.15 (0.00-->2.50)
- mean absolute distance = 0.17 +- 0.27
- 2797 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1069668.0, rms=3.300
- rms = 3.53, time step reduction 1 of 3 to 0.250...
- 023: dt: 0.2500, sse=896277.8, rms=2.195 (33.496%)
- 024: dt: 0.2500, sse=811407.9, rms=1.373 (37.422%)
- 025: dt: 0.2500, sse=801506.9, rms=1.251 (8.911%)
- 026: dt: 0.2500, sse=798175.1, rms=1.197 (4.283%)
- rms = 1.21, time step reduction 2 of 3 to 0.125...
- rms = 1.16, time step reduction 3 of 3 to 0.062...
- 027: dt: 0.1250, sse=795239.9, rms=1.161 (3.042%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=79.8, 90 (4) missing vertices, mean dist -0.0 [0.2 (%57.1)->0.2 (%42.9))]
- %88 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white.preaparc...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=824586.6, rms=1.648
- rms = 2.46, time step reduction 1 of 3 to 0.250...
- 028: dt: 0.2500, sse=777952.6, rms=1.043 (36.710%)
- 029: dt: 0.2500, sse=767923.3, rms=0.863 (17.257%)
- rms = 0.87, time step reduction 2 of 3 to 0.125...
- rms = 0.85, time step reduction 3 of 3 to 0.062...
- 030: dt: 0.1250, sse=767183.6, rms=0.852 (1.291%)
- positioning took 0.5 minutes
- generating cortex label...
- 13 non-cortical segments detected
- only using segment with 8489 vertices
- erasing segment 1 (vno[0] = 89178)
- erasing segment 2 (vno[0] = 102300)
- erasing segment 3 (vno[0] = 103352)
- erasing segment 4 (vno[0] = 105032)
- erasing segment 5 (vno[0] = 109498)
- erasing segment 6 (vno[0] = 110355)
- erasing segment 7 (vno[0] = 112084)
- erasing segment 8 (vno[0] = 114651)
- erasing segment 9 (vno[0] = 114708)
- erasing segment 10 (vno[0] = 122048)
- erasing segment 11 (vno[0] = 128778)
- erasing segment 12 (vno[0] = 131378)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.area
- vertex spacing 0.90 +- 0.24 (0.05-->4.08) (max @ vno 78740 --> 150691)
- face area 0.34 +- 0.15 (0.00-->2.52)
- refinement took 6.2 minutes
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050731 rh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- 18201 bright wm thresholded.
- 510 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.orig...
- computing class statistics...
- border white: 279703 voxels (1.67%)
- border gray 316576 voxels (1.89%)
- WM (98.0): 97.8 +- 9.6 [70.0 --> 110.0]
- GM (63.0) : 63.2 +- 11.4 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 42.6 (was 70)
- setting MAX_BORDER_WHITE to 113.6 (was 105)
- setting MIN_BORDER_WHITE to 54.0 (was 85)
- setting MAX_CSF to 31.2 (was 40)
- setting MAX_GRAY to 94.4 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 42.6 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 19.8 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.82 +- 0.21 (0.02-->2.58) (max @ vno 74689 --> 75998)
- face area 0.28 +- 0.12 (0.00-->1.53)
- mean absolute distance = 0.63 +- 0.75
- 3986 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=104+-5.2, GM=54+-11.3
- mean inside = 91.8, mean outside = 67.4
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=71.6, 109 (109) missing vertices, mean dist 0.3 [0.4 (%32.3)->0.7 (%67.7))]
- %78 local maxima, %18 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.93 +- 0.25 (0.15-->3.38) (max @ vno 113438 --> 113423)
- face area 0.28 +- 0.13 (0.00-->1.67)
- mean absolute distance = 0.26 +- 0.48
- 2453 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=6316928.0, rms=14.020
- 001: dt: 0.5000, sse=3575817.2, rms=10.115 (27.856%)
- 002: dt: 0.5000, sse=2312382.0, rms=7.695 (23.922%)
- 003: dt: 0.5000, sse=1664097.6, rms=6.073 (21.073%)
- 004: dt: 0.5000, sse=1375911.4, rms=5.190 (14.543%)
- 005: dt: 0.5000, sse=1245814.2, rms=4.732 (8.824%)
- 006: dt: 0.5000, sse=1202723.0, rms=4.570 (3.425%)
- 007: dt: 0.5000, sse=1180029.5, rms=4.473 (2.121%)
- rms = 4.45, time step reduction 1 of 3 to 0.250...
- 008: dt: 0.5000, sse=1173204.9, rms=4.446 (0.603%)
- 009: dt: 0.2500, sse=835006.2, rms=2.776 (37.572%)
- 010: dt: 0.2500, sse=764179.3, rms=2.278 (17.932%)
- 011: dt: 0.2500, sse=744320.4, rms=2.118 (7.035%)
- 012: dt: 0.2500, sse=731429.0, rms=2.007 (5.225%)
- 013: dt: 0.2500, sse=725726.5, rms=1.949 (2.882%)
- 014: dt: 0.2500, sse=719191.6, rms=1.888 (3.136%)
- rms = 1.86, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=715943.8, rms=1.859 (1.544%)
- 016: dt: 0.1250, sse=696061.9, rms=1.626 (12.522%)
- rms = 1.60, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=691073.6, rms=1.601 (1.543%)
- positioning took 2.1 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=75.1, 136 (36) missing vertices, mean dist -0.2 [0.3 (%76.1)->0.2 (%23.9))]
- %82 local maxima, %13 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.92 +- 0.24 (0.11-->3.70) (max @ vno 107179 --> 105960)
- face area 0.36 +- 0.16 (0.00-->2.52)
- mean absolute distance = 0.20 +- 0.34
- 2860 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1561281.0, rms=5.178
- 018: dt: 0.5000, sse=1180550.4, rms=3.704 (28.464%)
- rms = 4.29, time step reduction 1 of 3 to 0.250...
- 019: dt: 0.2500, sse=957277.6, rms=2.452 (33.800%)
- 020: dt: 0.2500, sse=887848.4, rms=1.901 (22.465%)
- 021: dt: 0.2500, sse=865892.6, rms=1.616 (14.996%)
- 022: dt: 0.2500, sse=853470.1, rms=1.563 (3.283%)
- 023: dt: 0.2500, sse=847623.1, rms=1.497 (4.217%)
- rms = 1.48, time step reduction 2 of 3 to 0.125...
- 024: dt: 0.2500, sse=845987.4, rms=1.480 (1.132%)
- 025: dt: 0.1250, sse=835009.1, rms=1.340 (9.480%)
- rms = 1.33, time step reduction 3 of 3 to 0.062...
- 026: dt: 0.1250, sse=834379.2, rms=1.328 (0.881%)
- positioning took 1.2 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=77.7, 121 (22) missing vertices, mean dist -0.1 [0.2 (%73.0)->0.2 (%27.0))]
- %87 local maxima, % 8 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.91 +- 0.24 (0.13-->3.78) (max @ vno 64748 --> 64749)
- face area 0.35 +- 0.16 (0.00-->2.62)
- mean absolute distance = 0.18 +- 0.28
- 3089 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1129730.1, rms=3.540
- rms = 3.77, time step reduction 1 of 3 to 0.250...
- 027: dt: 0.2500, sse=933788.1, rms=2.401 (32.185%)
- 028: dt: 0.2500, sse=838203.8, rms=1.528 (36.350%)
- 029: dt: 0.2500, sse=822243.7, rms=1.357 (11.209%)
- 030: dt: 0.2500, sse=813440.4, rms=1.270 (6.393%)
- rms = 1.28, time step reduction 2 of 3 to 0.125...
- rms = 1.23, time step reduction 3 of 3 to 0.062...
- 031: dt: 0.1250, sse=810044.2, rms=1.226 (3.466%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 1 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=78.7, 120 (19) missing vertices, mean dist -0.0 [0.2 (%57.3)->0.2 (%42.7))]
- %89 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white.preaparc...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=842906.9, rms=1.741
- rms = 2.60, time step reduction 1 of 3 to 0.250...
- 032: dt: 0.2500, sse=793154.7, rms=1.128 (35.189%)
- 033: dt: 0.2500, sse=781167.2, rms=0.921 (18.406%)
- rms = 0.91, time step reduction 2 of 3 to 0.125...
- 034: dt: 0.2500, sse=778678.6, rms=0.914 (0.748%)
- rms = 0.88, time step reduction 3 of 3 to 0.062...
- 035: dt: 0.1250, sse=775991.8, rms=0.880 (3.724%)
- positioning took 0.6 minutes
- generating cortex label...
- 11 non-cortical segments detected
- only using segment with 7741 vertices
- erasing segment 1 (vno[0] = 55047)
- erasing segment 2 (vno[0] = 76039)
- erasing segment 3 (vno[0] = 81414)
- erasing segment 4 (vno[0] = 89889)
- erasing segment 5 (vno[0] = 94812)
- erasing segment 6 (vno[0] = 101425)
- erasing segment 7 (vno[0] = 101532)
- erasing segment 8 (vno[0] = 104728)
- erasing segment 9 (vno[0] = 105877)
- erasing segment 10 (vno[0] = 110378)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.area
- vertex spacing 0.90 +- 0.24 (0.03-->3.85) (max @ vno 64748 --> 64749)
- face area 0.35 +- 0.16 (0.00-->2.50)
- refinement took 6.8 minutes
- PIDs (641 644) completed and logs appended.
- #--------------------------------------------
- #@# Smooth2 lh Sat Oct 7 21:52:44 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- #--------------------------------------------
- #@# Smooth2 rh Sat Oct 7 21:52:44 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- Waiting for PID 899 of (899 902) to complete...
- Waiting for PID 902 of (899 902) to complete...
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (899 902) completed and logs appended.
- #--------------------------------------------
- #@# Inflation2 lh Sat Oct 7 21:52:52 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- #--------------------------------------------
- #@# Inflation2 rh Sat Oct 7 21:52:52 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Waiting for PID 954 of (954 957) to complete...
- Waiting for PID 957 of (954 957) to complete...
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- Reading ../surf/lh.smoothwm
- avg radius = 49.3 mm, total surface area = 93994 mm^2
- writing inflated surface to ../surf/lh.inflated
- writing sulcal depths to ../surf/lh.sulc
-
step 000: RMS=0.176 (target=0.015)
step 005: RMS=0.122 (target=0.015)
step 010: RMS=0.089 (target=0.015)
step 015: RMS=0.072 (target=0.015)
step 020: RMS=0.058 (target=0.015)
step 025: RMS=0.048 (target=0.015)
step 030: RMS=0.040 (target=0.015)
step 035: RMS=0.034 (target=0.015)
step 040: RMS=0.029 (target=0.015)
step 045: RMS=0.025 (target=0.015)
step 050: RMS=0.022 (target=0.015)
step 055: RMS=0.021 (target=0.015)
step 060: RMS=0.019 (target=0.015)
- inflation complete.
- inflation took 1.2 minutes
- mris_inflate utimesec 69.275468
- mris_inflate stimesec 0.178972
- mris_inflate ru_maxrss 220156
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 32109
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 10616
- mris_inflate ru_oublock 11816
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2243
- mris_inflate ru_nivcsw 5403
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Reading ../surf/rh.smoothwm
- avg radius = 49.4 mm, total surface area = 94483 mm^2
- writing inflated surface to ../surf/rh.inflated
- writing sulcal depths to ../surf/rh.sulc
-
step 000: RMS=0.176 (target=0.015)
step 005: RMS=0.124 (target=0.015)
step 010: RMS=0.091 (target=0.015)
step 015: RMS=0.073 (target=0.015)
step 020: RMS=0.060 (target=0.015)
step 025: RMS=0.051 (target=0.015)
step 030: RMS=0.042 (target=0.015)
step 035: RMS=0.036 (target=0.015)
step 040: RMS=0.030 (target=0.015)
step 045: RMS=0.026 (target=0.015)
step 050: RMS=0.023 (target=0.015)
step 055: RMS=0.022 (target=0.015)
step 060: RMS=0.021 (target=0.015)
- inflation complete.
- inflation took 1.2 minutes
- mris_inflate utimesec 69.621415
- mris_inflate stimesec 0.168974
- mris_inflate ru_maxrss 220708
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 32245
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 10640
- mris_inflate ru_oublock 11840
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2219
- mris_inflate ru_nivcsw 5342
- PIDs (954 957) completed and logs appended.
- #--------------------------------------------
- #@# Curv .H and .K lh Sat Oct 7 21:54:02 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- mris_curvature -w lh.white.preaparc
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- #--------------------------------------------
- #@# Curv .H and .K rh Sat Oct 7 21:54:02 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- mris_curvature -w rh.white.preaparc
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- reconbatchjobs /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts/recon-all.log mris_curvature_white_lh.cmd rm_curvature_white_lh.H.cmd ln_curvature_white_lh.H.cmd rm_curvature_white_lh.K.cmd ln_curvature_white_lh.K.cmd mris_curvature_inflated_lh.cmd mris_curvature_white_rh.cmd rm_curvature_white_rh.H.cmd ln_curvature_white_rh.H.cmd rm_curvature_white_rh.K.cmd ln_curvature_white_rh.K.cmd mris_curvature_inflated_rh.cmd
- Waiting for PID 1074 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1077 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1080 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1083 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1086 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1089 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1092 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1095 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1098 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1101 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1104 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- Waiting for PID 1107 of (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) to complete...
- mris_curvature -w lh.white.preaparc
- total integrated curvature = 8.023*4pi (100.815) --> -7 handles
- ICI = 146.0, FI = 1784.6, variation=27127.607
- writing Gaussian curvature to ./lh.white.preaparc.K...done.
- writing mean curvature to ./lh.white.preaparc.H...done.
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 185 vertices thresholded to be in k1 ~ [-0.17 0.74], k2 ~ [-0.08 0.05]
- total integrated curvature = 0.581*4pi (7.298) --> 0 handles
- ICI = 1.5, FI = 9.5, variation=160.585
- 118 vertices thresholded to be in [-0.01 0.01]
- writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 133 vertices thresholded to be in [-0.11 0.26]
- done.
- writing mean curvature to ./lh.inflated.H...curvature mean = -0.015, std = 0.021
- done.
- mris_curvature -w rh.white.preaparc
- total integrated curvature = 9.646*4pi (121.219) --> -9 handles
- ICI = 155.6, FI = 1873.8, variation=28534.199
- writing Gaussian curvature to ./rh.white.preaparc.K...done.
- writing mean curvature to ./rh.white.preaparc.H...done.
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 168 vertices thresholded to be in k1 ~ [-0.22 0.41], k2 ~ [-0.09 0.06]
- total integrated curvature = 0.609*4pi (7.647) --> 0 handles
- ICI = 1.5, FI = 8.8, variation=151.943
- 137 vertices thresholded to be in [-0.01 0.01]
- writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 142 vertices thresholded to be in [-0.11 0.17]
- done.
- writing mean curvature to ./rh.inflated.H...curvature mean = -0.015, std = 0.020
- done.
- PIDs (1074 1077 1080 1083 1086 1089 1092 1095 1098 1101 1104 1107) completed and logs appended.
- #-----------------------------------------
- #@# Curvature Stats lh Sat Oct 7 21:55:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm 0050731 lh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/lh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0050731/lh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 306 ]
- Gb_filter = 0
- WARN: S lookup min: -0.520151
- WARN: S explicit min: 0.000000 vertex = 231
- #-----------------------------------------
- #@# Curvature Stats rh Sat Oct 7 21:55:41 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm 0050731 rh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/rh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0050731/rh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 312 ]
- Gb_filter = 0
- WARN: S lookup min: -0.487750
- WARN: S explicit min: 0.000000 vertex = 400
- #--------------------------------------------
- #@# Sphere lh Sat Oct 7 21:55:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- #--------------------------------------------
- #@# Sphere rh Sat Oct 7 21:55:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- Waiting for PID 1252 of (1252 1255) to complete...
- Waiting for PID 1255 of (1252 1255) to complete...
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.266...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %19.25
- pass 1: epoch 2 of 3 starting distance error %19.21
- unfolding complete - removing small folds...
- starting distance error %19.15
- removing remaining folds...
- final distance error %19.15
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 296 negative triangles
- 108: dt=0.9900, 296 negative triangles
- 109: dt=0.9900, 90 negative triangles
- 110: dt=0.9900, 45 negative triangles
- 111: dt=0.9900, 24 negative triangles
- 112: dt=0.9900, 21 negative triangles
- 113: dt=0.9900, 18 negative triangles
- 114: dt=0.9900, 23 negative triangles
- 115: dt=0.9900, 15 negative triangles
- 116: dt=0.9900, 12 negative triangles
- 117: dt=0.9900, 17 negative triangles
- 118: dt=0.9900, 8 negative triangles
- 119: dt=0.9900, 8 negative triangles
- 120: dt=0.9900, 6 negative triangles
- 121: dt=0.9900, 7 negative triangles
- 122: dt=0.9900, 5 negative triangles
- 123: dt=0.9900, 5 negative triangles
- 124: dt=0.9900, 6 negative triangles
- 125: dt=0.9900, 6 negative triangles
- 126: dt=0.9900, 3 negative triangles
- 127: dt=0.9900, 3 negative triangles
- 128: dt=0.9900, 2 negative triangles
- 129: dt=0.9900, 1 negative triangles
- 130: dt=0.9900, 4 negative triangles
- 131: dt=0.9900, 1 negative triangles
- 132: dt=0.9900, 1 negative triangles
- writing spherical brain to ../surf/lh.sphere
- spherical transformation took 1.08 hours
- mris_sphere utimesec 3894.739909
- mris_sphere stimesec 1.587758
- mris_sphere ru_maxrss 310692
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 54355
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 10664
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 110889
- mris_sphere ru_nivcsw 329387
- FSRUNTIME@ mris_sphere 1.0822 hours 1 threads
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.267...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %19.81
- pass 1: epoch 2 of 3 starting distance error %19.74
- unfolding complete - removing small folds...
- starting distance error %19.70
- removing remaining folds...
- final distance error %19.71
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 87 negative triangles
- 182: dt=0.9900, 87 negative triangles
- 183: dt=0.9900, 31 negative triangles
- 184: dt=0.9900, 16 negative triangles
- 185: dt=0.9900, 16 negative triangles
- 186: dt=0.9900, 7 negative triangles
- 187: dt=0.9900, 7 negative triangles
- 188: dt=0.9900, 6 negative triangles
- 189: dt=0.9900, 2 negative triangles
- 190: dt=0.9900, 2 negative triangles
- 191: dt=0.9900, 3 negative triangles
- 192: dt=0.9900, 1 negative triangles
- writing spherical brain to ../surf/rh.sphere
- spherical transformation took 1.19 hours
- mris_sphere utimesec 4535.004574
- mris_sphere stimesec 1.536766
- mris_sphere ru_maxrss 311184
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 55002
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 10664
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 104005
- mris_sphere ru_nivcsw 336491
- FSRUNTIME@ mris_sphere 1.1854 hours 1 threads
- PIDs (1252 1255) completed and logs appended.
- #--------------------------------------------
- #@# Surf Reg lh Sat Oct 7 23:06:54 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- #--------------------------------------------
- #@# Surf Reg rh Sat Oct 7 23:06:54 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- Waiting for PID 4117 of (4117 4122) to complete...
- Waiting for PID 4122 of (4117 4122) to complete...
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/lh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 0
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading lh.sulc
- curvature mean = -0.000, std = 5.646
- curvature mean = 0.039, std = 0.818
- curvature mean = 0.016, std = 0.850
- Starting MRISrigidBodyAlignGlobal()
- d=64.00 min @ (0.00, -16.00, 16.00) sse = 337485.2, tmin=1.5587
- d=32.00 min @ (8.00, 8.00, -8.00) sse = 271473.7, tmin=3.1526
- d=16.00 min @ (-4.00, -4.00, 4.00) sse = 236612.5, tmin=4.7601
- d=8.00 min @ (0.00, 2.00, 0.00) sse = 222604.9, tmin=6.3850
- d=4.00 min @ (0.00, 0.00, -1.00) sse = 220800.4, tmin=8.0181
- d=2.00 min @ (-0.50, 0.00, 0.50) sse = 220087.4, tmin=9.6476
- d=1.00 min @ (0.00, 0.00, -0.25) sse = 219913.8, tmin=11.2670
- d=0.50 min @ (0.00, 0.12, 0.00) sse = 219881.9, tmin=12.9077
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 12.91 min
- curvature mean = -0.005, std = 0.829
- curvature mean = 0.007, std = 0.942
- curvature mean = -0.015, std = 0.833
- curvature mean = 0.003, std = 0.976
- curvature mean = -0.016, std = 0.834
- curvature mean = 0.001, std = 0.990
- 2 Reading smoothwm
- curvature mean = -0.020, std = 0.262
- curvature mean = 0.037, std = 0.244
- curvature mean = 0.057, std = 0.364
- curvature mean = 0.035, std = 0.301
- curvature mean = 0.027, std = 0.580
- curvature mean = 0.035, std = 0.327
- curvature mean = 0.013, std = 0.729
- curvature mean = 0.035, std = 0.337
- curvature mean = 0.004, std = 0.834
- MRISregister() return, current seed 0
- -01: dt=0.0000, 11 negative triangles
- 116: dt=0.9900, 11 negative triangles
- expanding nbhd size to 1
- 117: dt=0.9900, 14 negative triangles
- 118: dt=0.9900, 8 negative triangles
- 119: dt=0.9900, 10 negative triangles
- 120: dt=0.9900, 7 negative triangles
- 121: dt=0.9900, 7 negative triangles
- 122: dt=0.9900, 4 negative triangles
- 123: dt=0.9900, 6 negative triangles
- 124: dt=0.9900, 6 negative triangles
- 125: dt=0.9900, 8 negative triangles
- 126: dt=0.9900, 3 negative triangles
- 127: dt=0.9900, 3 negative triangles
- 128: dt=0.9900, 2 negative triangles
- 129: dt=0.9900, 3 negative triangles
- 130: dt=0.9900, 2 negative triangles
- 131: dt=0.9900, 2 negative triangles
- writing registered surface to ../surf/lh.sphere.reg...
- registration took 2.22 hours
- mris_register utimesec 7986.673841
- mris_register stimesec 5.294195
- mris_register ru_maxrss 272732
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 40960
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 0
- mris_register ru_oublock 10712
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 351053
- mris_register ru_nivcsw 466081
- FSRUNTIME@ mris_register 2.2197 hours 1 threads
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/rh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 1
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading rh.sulc
- curvature mean = -0.000, std = 5.648
- curvature mean = 0.041, std = 0.816
- curvature mean = 0.012, std = 0.851
- Starting MRISrigidBodyAlignGlobal()
- d=64.00 min @ (16.00, -16.00, 16.00) sse = 367487.5, tmin=1.5634
- d=32.00 min @ (-8.00, 0.00, -8.00) sse = 294720.2, tmin=3.1625
- d=16.00 min @ (0.00, 0.00, 4.00) sse = 292567.6, tmin=4.7707
- d=8.00 min @ (2.00, 0.00, -2.00) sse = 285329.0, tmin=6.3809
- d=4.00 min @ (0.00, 1.00, 1.00) sse = 284681.1, tmin=7.9993
- d=2.00 min @ (-0.50, -0.50, -0.50) sse = 284110.5, tmin=9.6181
- d=1.00 min @ (0.25, 0.00, 0.00) sse = 284094.8, tmin=11.2347
- d=0.50 min @ (-0.12, 0.00, 0.00) sse = 284075.8, tmin=12.8754
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 12.88 min
- curvature mean = -0.001, std = 0.819
- curvature mean = 0.004, std = 0.941
- curvature mean = -0.009, std = 0.825
- curvature mean = 0.002, std = 0.976
- curvature mean = -0.013, std = 0.824
- curvature mean = 0.000, std = 0.990
- 2 Reading smoothwm
- curvature mean = -0.020, std = 0.270
- curvature mean = 0.037, std = 0.241
- curvature mean = 0.050, std = 0.362
- curvature mean = 0.033, std = 0.297
- curvature mean = 0.031, std = 0.562
- curvature mean = 0.033, std = 0.323
- curvature mean = 0.018, std = 0.707
- curvature mean = 0.032, std = 0.334
- curvature mean = 0.006, std = 0.815
- MRISregister() return, current seed 0
- -01: dt=0.0000, 60 negative triangles
- 127: dt=0.9900, 60 negative triangles
- expanding nbhd size to 1
- 128: dt=0.9900, 78 negative triangles
- 129: dt=0.9900, 68 negative triangles
- 130: dt=0.9405, 66 negative triangles
- 131: dt=0.9405, 67 negative triangles
- 132: dt=0.9405, 66 negative triangles
- 133: dt=0.9405, 66 negative triangles
- 134: dt=0.9405, 62 negative triangles
- 135: dt=0.9405, 65 negative triangles
- 136: dt=0.9405, 60 negative triangles
- 137: dt=0.9405, 61 negative triangles
- 138: dt=0.9405, 56 negative triangles
- 139: dt=0.9405, 53 negative triangles
- 140: dt=0.9405, 54 negative triangles
- 141: dt=0.9405, 52 negative triangles
- 142: dt=0.9405, 49 negative triangles
- 143: dt=0.9405, 43 negative triangles
- 144: dt=0.9405, 42 negative triangles
- 145: dt=0.9405, 40 negative triangles
- 146: dt=0.9405, 40 negative triangles
- 147: dt=0.9405, 40 negative triangles
- 148: dt=0.9405, 35 negative triangles
- 149: dt=0.9405, 37 negative triangles
- 150: dt=0.9405, 39 negative triangles
- 151: dt=0.9405, 35 negative triangles
- 152: dt=0.9405, 37 negative triangles
- 153: dt=0.9405, 36 negative triangles
- 154: dt=0.9405, 35 negative triangles
- 155: dt=0.9405, 33 negative triangles
- 156: dt=0.9405, 36 negative triangles
- 157: dt=0.9405, 33 negative triangles
- 158: dt=0.9405, 35 negative triangles
- 159: dt=0.9405, 35 negative triangles
- 160: dt=0.9405, 31 negative triangles
- 161: dt=0.9405, 31 negative triangles
- 162: dt=0.9405, 32 negative triangles
- 163: dt=0.9405, 28 negative triangles
- 164: dt=0.9405, 28 negative triangles
- 165: dt=0.9405, 29 negative triangles
- 166: dt=0.9405, 28 negative triangles
- 167: dt=0.9405, 29 negative triangles
- 168: dt=0.9405, 28 negative triangles
- 169: dt=0.9405, 29 negative triangles
- 170: dt=0.9405, 27 negative triangles
- 171: dt=0.9405, 28 negative triangles
- 172: dt=0.9405, 27 negative triangles
- 173: dt=0.9405, 27 negative triangles
- 174: dt=0.9405, 28 negative triangles
- 175: dt=0.9405, 26 negative triangles
- 176: dt=0.9405, 28 negative triangles
- 177: dt=0.9405, 28 negative triangles
- 178: dt=0.9405, 27 negative triangles
- 179: dt=0.9405, 25 negative triangles
- 180: dt=0.9405, 24 negative triangles
- 181: dt=0.9405, 24 negative triangles
- 182: dt=0.9405, 23 negative triangles
- 183: dt=0.9405, 21 negative triangles
- 184: dt=0.9405, 21 negative triangles
- 185: dt=0.9405, 19 negative triangles
- 186: dt=0.9405, 21 negative triangles
- 187: dt=0.9405, 19 negative triangles
- 188: dt=0.9405, 20 negative triangles
- 189: dt=0.9405, 19 negative triangles
- 190: dt=0.9405, 19 negative triangles
- 191: dt=0.9405, 19 negative triangles
- 192: dt=0.9405, 18 negative triangles
- 193: dt=0.9405, 20 negative triangles
- 194: dt=0.9405, 18 negative triangles
- 195: dt=0.9405, 19 negative triangles
- 196: dt=0.9405, 18 negative triangles
- 197: dt=0.9405, 17 negative triangles
- 198: dt=0.9405, 16 negative triangles
- 199: dt=0.9405, 15 negative triangles
- 200: dt=0.9405, 15 negative triangles
- 201: dt=0.9405, 14 negative triangles
- 202: dt=0.9405, 15 negative triangles
- 203: dt=0.9405, 13 negative triangles
- 204: dt=0.9405, 13 negative triangles
- 205: dt=0.9405, 13 negative triangles
- 206: dt=0.9405, 14 negative triangles
- 207: dt=0.9405, 12 negative triangles
- 208: dt=0.9405, 11 negative triangles
- 209: dt=0.9405, 10 negative triangles
- 210: dt=0.9405, 10 negative triangles
- 211: dt=0.9405, 9 negative triangles
- 212: dt=0.9405, 10 negative triangles
- 213: dt=0.9405, 8 negative triangles
- 214: dt=0.9405, 9 negative triangles
- 215: dt=0.9405, 8 negative triangles
- 216: dt=0.9405, 7 negative triangles
- 217: dt=0.9405, 7 negative triangles
- 218: dt=0.9405, 6 negative triangles
- 219: dt=0.9405, 6 negative triangles
- 220: dt=0.9405, 6 negative triangles
- 221: dt=0.9405, 6 negative triangles
- 222: dt=0.9405, 6 negative triangles
- 223: dt=0.9405, 6 negative triangles
- 224: dt=0.9405, 4 negative triangles
- 225: dt=0.9405, 3 negative triangles
- 226: dt=0.9405, 3 negative triangles
- 227: dt=0.9405, 3 negative triangles
- 228: dt=0.9405, 3 negative triangles
- 229: dt=0.9405, 2 negative triangles
- 230: dt=0.9405, 3 negative triangles
- 231: dt=0.9405, 1 negative triangles
- 232: dt=0.9405, 1 negative triangles
- 233: dt=0.9405, 1 negative triangles
- 234: dt=0.9405, 1 negative triangles
- 235: dt=0.9405, 1 negative triangles
- 236: dt=0.9405, 1 negative triangles
- 237: dt=0.9405, 1 negative triangles
- writing registered surface to ../surf/rh.sphere.reg...
- registration took 2.29 hours
- mris_register utimesec 8386.268093
- mris_register stimesec 5.605147
- mris_register ru_maxrss 274000
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 41094
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 10640
- mris_register ru_oublock 10744
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 357796
- mris_register ru_nivcsw 459403
- FSRUNTIME@ mris_register 2.2878 hours 1 threads
- PIDs (4117 4122) completed and logs appended.
- #--------------------------------------------
- #@# Jacobian white lh Sun Oct 8 01:24:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- #--------------------------------------------
- #@# Jacobian white rh Sun Oct 8 01:24:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- Waiting for PID 12333 of (12333 12336) to complete...
- Waiting for PID 12336 of (12333 12336) to complete...
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- reading surface from ../surf/lh.white.preaparc...
- writing curvature file ../surf/lh.jacobian_white
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- reading surface from ../surf/rh.white.preaparc...
- writing curvature file ../surf/rh.jacobian_white
- PIDs (12333 12336) completed and logs appended.
- #--------------------------------------------
- #@# AvgCurv lh Sun Oct 8 01:24:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- #--------------------------------------------
- #@# AvgCurv rh Sun Oct 8 01:24:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- Waiting for PID 12379 of (12379 12382) to complete...
- Waiting for PID 12382 of (12379 12382) to complete...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/lh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/lh.avg_curv...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/rh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/rh.avg_curv...
- PIDs (12379 12382) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc lh Sun Oct 8 01:24:16 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- #-----------------------------------------
- #@# Cortical Parc rh Sun Oct 8 01:24:16 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- Waiting for PID 12426 of (12426 12429) to complete...
- Waiting for PID 12429 of (12426 12429) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.8 using min determinant for regularization = 0.006
- 0 singular and 342 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1109 labels changed using aseg
- relabeling using gibbs priors...
- 000: 3498 changed, 150920 examined...
- 001: 810 changed, 14494 examined...
- 002: 216 changed, 4382 examined...
- 003: 90 changed, 1286 examined...
- 004: 34 changed, 538 examined...
- 005: 18 changed, 209 examined...
- 006: 6 changed, 108 examined...
- 007: 3 changed, 33 examined...
- 008: 1 changed, 14 examined...
- 009: 0 changed, 7 examined...
- 267 labels changed using aseg
- 000: 126 total segments, 87 labels (276 vertices) changed
- 001: 40 total segments, 1 labels (2 vertices) changed
- 002: 39 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 9 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1996 vertices marked for relabeling...
- 1996 labels changed in reclassification.
- writing output to ../label/lh.aparc.annot...
- classification took 0 minutes and 19 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.7 using min determinant for regularization = 0.004
- 0 singular and 309 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1142 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2979 changed, 151230 examined...
- 001: 661 changed, 12698 examined...
- 002: 151 changed, 3714 examined...
- 003: 49 changed, 904 examined...
- 004: 17 changed, 303 examined...
- 005: 9 changed, 104 examined...
- 006: 2 changed, 53 examined...
- 007: 2 changed, 14 examined...
- 008: 3 changed, 15 examined...
- 009: 2 changed, 20 examined...
- 010: 1 changed, 12 examined...
- 011: 2 changed, 7 examined...
- 012: 1 changed, 15 examined...
- 013: 0 changed, 7 examined...
- 173 labels changed using aseg
- 000: 105 total segments, 63 labels (277 vertices) changed
- 001: 43 total segments, 1 labels (1 vertices) changed
- 002: 42 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 7 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1602 vertices marked for relabeling...
- 1602 labels changed in reclassification.
- writing output to ../label/rh.aparc.annot...
- classification took 0 minutes and 19 seconds.
- PIDs (12426 12429) completed and logs appended.
- #--------------------------------------------
- #@# Make Pial Surf lh Sun Oct 8 01:24:35 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050731 lh
- #--------------------------------------------
- #@# Make Pial Surf rh Sun Oct 8 01:24:35 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050731 rh
- Waiting for PID 12477 of (12477 12480) to complete...
- Waiting for PID 12480 of (12477 12480) to complete...
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050731 lh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- 18201 bright wm thresholded.
- 510 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.orig...
- computing class statistics...
- border white: 279703 voxels (1.67%)
- border gray 316576 voxels (1.89%)
- WM (98.0): 97.8 +- 9.6 [70.0 --> 110.0]
- GM (63.0) : 63.2 +- 11.4 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 45.6 (was 70)
- setting MAX_BORDER_WHITE to 112.6 (was 105)
- setting MIN_BORDER_WHITE to 57.0 (was 85)
- setting MAX_CSF to 34.2 (was 40)
- setting MAX_GRAY to 93.4 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 45.6 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 22.8 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=103+-4.3, GM=57+-8.7
- mean inside = 92.2, mean outside = 68.2
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.90 +- 0.24 (0.05-->4.08) (max @ vno 78740 --> 150691)
- face area 0.34 +- 0.15 (0.00-->2.49)
- mean absolute distance = 0.44 +- 0.66
- 1955 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 1 with 9 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 3 with 2 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 4 with 4 points - only 0.00% unknown
- deleting segment 5 with 175 points - only 0.00% unknown
- deleting segment 6 with 18 points - only 0.00% unknown
- deleting segment 7 with 6 points - only 0.00% unknown
- deleting segment 8 with 13 points - only 0.00% unknown
- deleting segment 9 with 27 points - only 0.00% unknown
- deleting segment 10 with 20 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 11 with 4 points - only 0.00% unknown
- deleting segment 12 with 9 points - only 0.00% unknown
- mean border=72.9, 94 (94) missing vertices, mean dist 0.3 [0.5 (%13.7)->0.4 (%86.3))]
- %71 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.93 +- 0.25 (0.12-->4.08) (max @ vno 78740 --> 150691)
- face area 0.34 +- 0.15 (0.00-->2.62)
- mean absolute distance = 0.25 +- 0.45
- 2068 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3017472.8, rms=8.884
- 001: dt: 0.5000, sse=1518042.6, rms=5.196 (41.513%)
- 002: dt: 0.5000, sse=1227880.6, rms=4.135 (20.417%)
- rms = 4.12, time step reduction 1 of 3 to 0.250...
- 003: dt: 0.5000, sse=1223836.9, rms=4.120 (0.379%)
- 004: dt: 0.2500, sse=877766.7, rms=2.176 (47.178%)
- 005: dt: 0.2500, sse=831725.5, rms=1.770 (18.655%)
- 006: dt: 0.2500, sse=817748.3, rms=1.625 (8.210%)
- 007: dt: 0.2500, sse=812384.9, rms=1.550 (4.607%)
- rms = 1.53, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=810262.1, rms=1.530 (1.269%)
- 009: dt: 0.1250, sse=800588.1, rms=1.408 (7.974%)
- rms = 1.40, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=799828.7, rms=1.398 (0.743%)
- positioning took 1.2 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 5 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 1 with 4 points - only 0.00% unknown
- deleting segment 2 with 102 points - only 0.00% unknown
- deleting segment 4 with 5 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 5 with 4 points - only 0.00% unknown
- deleting segment 6 with 11 points - only 0.00% unknown
- deleting segment 7 with 11 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 8 with 1 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 9 with 4 points - only 0.00% unknown
- deleting segment 10 with 16 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 11 with 4 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 12 with 4 points - only 0.00% unknown
- mean border=76.2, 73 (29) missing vertices, mean dist -0.2 [0.3 (%75.5)->0.2 (%24.5))]
- %80 local maxima, %16 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.92 +- 0.24 (0.10-->4.16) (max @ vno 109560 --> 108606)
- face area 0.36 +- 0.16 (0.00-->2.74)
- mean absolute distance = 0.19 +- 0.32
- 2958 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1470065.2, rms=4.864
- 011: dt: 0.5000, sse=1105584.2, rms=3.328 (31.567%)
- rms = 3.94, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=918532.8, rms=2.137 (35.780%)
- 013: dt: 0.2500, sse=860001.0, rms=1.576 (26.262%)
- 014: dt: 0.2500, sse=839494.2, rms=1.345 (14.679%)
- rms = 1.30, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=835043.9, rms=1.297 (3.549%)
- 016: dt: 0.1250, sse=826745.9, rms=1.171 (9.696%)
- rms = 1.17, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=839116.9, rms=1.165 (0.498%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 6 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 1 with 2 points - only 0.00% unknown
- deleting segment 2 with 5 points - only 0.00% unknown
- deleting segment 3 with 120 points - only 0.00% unknown
- deleting segment 4 with 12 points - only 0.00% unknown
- deleting segment 5 with 6 points - only 0.00% unknown
- deleting segment 6 with 13 points - only 0.00% unknown
- deleting segment 7 with 5 points - only 0.00% unknown
- deleting segment 8 with 21 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 9 with 4 points - only 0.00% unknown
- deleting segment 10 with 6 points - only 0.00% unknown
- mean border=78.7, 61 (19) missing vertices, mean dist -0.1 [0.2 (%73.3)->0.2 (%26.7))]
- %86 local maxima, %10 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.91 +- 0.24 (0.10-->4.24) (max @ vno 109560 --> 108606)
- face area 0.35 +- 0.16 (0.00-->2.91)
- mean absolute distance = 0.17 +- 0.27
- 2831 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1101250.2, rms=3.350
- rms = 3.53, time step reduction 1 of 3 to 0.250...
- 018: dt: 0.2500, sse=908153.4, rms=2.228 (33.486%)
- 019: dt: 0.2500, sse=822191.4, rms=1.353 (39.291%)
- 020: dt: 0.2500, sse=808990.8, rms=1.220 (9.813%)
- 021: dt: 0.2500, sse=804575.7, rms=1.150 (5.746%)
- rms = 1.17, time step reduction 2 of 3 to 0.125...
- rms = 1.11, time step reduction 3 of 3 to 0.062...
- 022: dt: 0.1250, sse=801487.9, rms=1.113 (3.252%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 9 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- deleting segment 2 with 4 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 3 with 4 points - only 0.00% unknown
- deleting segment 4 with 125 points - only 0.00% unknown
- deleting segment 5 with 22 points - only 0.00% unknown
- deleting segment 6 with 6 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 7 with 1 points - only 0.00% unknown
- deleting segment 8 with 13 points - only 0.00% unknown
- deleting segment 9 with 14 points - only 0.00% unknown
- deleting segment 10 with 21 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 11 with 4 points - only 0.00% unknown
- deleting segment 12 with 8 points - only 0.00% unknown
- mean border=79.7, 55 (13) missing vertices, mean dist -0.0 [0.2 (%57.3)->0.2 (%42.7))]
- %88 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=833018.2, rms=1.654
- rms = 2.46, time step reduction 1 of 3 to 0.250...
- 023: dt: 0.2500, sse=786087.9, rms=1.037 (37.318%)
- 024: dt: 0.2500, sse=781791.2, rms=0.854 (17.612%)
- rms = 0.86, time step reduction 2 of 3 to 0.125...
- rms = 0.84, time step reduction 3 of 3 to 0.062...
- 025: dt: 0.1250, sse=775999.2, rms=0.839 (1.722%)
- positioning took 0.5 minutes
- generating cortex label...
- 8 non-cortical segments detected
- only using segment with 8493 vertices
- erasing segment 1 (vno[0] = 89178)
- erasing segment 2 (vno[0] = 105032)
- erasing segment 3 (vno[0] = 109498)
- erasing segment 4 (vno[0] = 110355)
- erasing segment 5 (vno[0] = 112084)
- erasing segment 6 (vno[0] = 114708)
- erasing segment 7 (vno[0] = 122048)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.area
- vertex spacing 0.90 +- 0.25 (0.05-->4.23) (max @ vno 108606 --> 109560)
- face area 0.35 +- 0.16 (0.00-->2.92)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- removing 1 vertex label from ripped group
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=44.6, 107 (107) missing vertices, mean dist 1.5 [0.7 (%0.0)->2.5 (%100.0))]
- % 8 local maxima, %51 large gradients and %37 min vals, 576 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=37392788.0, rms=35.644
- 001: dt: 0.0500, sse=32503850.0, rms=33.181 (6.909%)
- 002: dt: 0.0500, sse=28994592.0, rms=31.294 (5.687%)
- 003: dt: 0.0500, sse=26308666.0, rms=29.769 (4.873%)
- 004: dt: 0.0500, sse=24138374.0, rms=28.477 (4.340%)
- 005: dt: 0.0500, sse=22313476.0, rms=27.344 (3.981%)
- 006: dt: 0.0500, sse=20736138.0, rms=26.325 (3.727%)
- 007: dt: 0.0500, sse=19345350.0, rms=25.392 (3.543%)
- 008: dt: 0.0500, sse=18100292.0, rms=24.527 (3.407%)
- 009: dt: 0.0500, sse=16974436.0, rms=23.718 (3.300%)
- 010: dt: 0.0500, sse=15947816.0, rms=22.955 (3.217%)
- positioning took 1.1 minutes
- mean border=44.5, 101 (67) missing vertices, mean dist 1.2 [0.4 (%0.0)->2.0 (%100.0))]
- % 8 local maxima, %51 large gradients and %37 min vals, 499 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=16659892.0, rms=23.487
- 011: dt: 0.0500, sse=15715152.0, rms=22.779 (3.015%)
- 012: dt: 0.0500, sse=14845369.0, rms=22.107 (2.951%)
- 013: dt: 0.0500, sse=14041844.0, rms=21.467 (2.894%)
- 014: dt: 0.0500, sse=13297868.0, rms=20.857 (2.841%)
- 015: dt: 0.0500, sse=12608190.0, rms=20.276 (2.790%)
- 016: dt: 0.0500, sse=11968824.0, rms=19.721 (2.736%)
- 017: dt: 0.0500, sse=11376210.0, rms=19.192 (2.681%)
- 018: dt: 0.0500, sse=10826918.0, rms=18.689 (2.623%)
- 019: dt: 0.0500, sse=10317814.0, rms=18.209 (2.564%)
- 020: dt: 0.0500, sse=9846399.0, rms=17.754 (2.501%)
- positioning took 1.1 minutes
- mean border=44.4, 112 (54) missing vertices, mean dist 1.0 [0.1 (%0.8)->1.7 (%99.2))]
- % 8 local maxima, %51 large gradients and %36 min vals, 507 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=9914252.0, rms=17.827
- 021: dt: 0.0500, sse=9466317.0, rms=17.385 (2.479%)
- 022: dt: 0.0500, sse=9052227.0, rms=16.966 (2.410%)
- 023: dt: 0.0500, sse=8666782.0, rms=16.566 (2.355%)
- 024: dt: 0.0500, sse=8310595.0, rms=16.188 (2.282%)
- 025: dt: 0.0500, sse=7980797.0, rms=15.830 (2.213%)
- 026: dt: 0.0500, sse=7674816.0, rms=15.490 (2.147%)
- 027: dt: 0.0500, sse=7388785.0, rms=15.165 (2.097%)
- 028: dt: 0.0500, sse=7118924.0, rms=14.852 (2.064%)
- 029: dt: 0.0500, sse=6863426.5, rms=14.549 (2.038%)
- 030: dt: 0.0500, sse=6621531.5, rms=14.257 (2.011%)
- positioning took 1.1 minutes
- mean border=44.3, 143 (50) missing vertices, mean dist 0.8 [0.1 (%12.6)->1.5 (%87.4))]
- % 8 local maxima, %51 large gradients and %36 min vals, 466 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=6714974.0, rms=14.370
- 031: dt: 0.5000, sse=5040629.0, rms=12.173 (15.290%)
- 032: dt: 0.5000, sse=3958048.0, rms=10.500 (13.737%)
- 033: dt: 0.5000, sse=3204799.8, rms=9.160 (12.763%)
- 034: dt: 0.5000, sse=2693805.0, rms=8.117 (11.392%)
- 035: dt: 0.5000, sse=2359579.2, rms=7.355 (9.386%)
- 036: dt: 0.5000, sse=2137343.5, rms=6.796 (7.595%)
- 037: dt: 0.5000, sse=1979127.8, rms=6.374 (6.220%)
- 038: dt: 0.5000, sse=1857172.4, rms=6.023 (5.494%)
- 039: dt: 0.5000, sse=1758899.4, rms=5.732 (4.845%)
- 040: dt: 0.5000, sse=1675434.0, rms=5.466 (4.638%)
- 041: dt: 0.5000, sse=1611340.0, rms=5.259 (3.788%)
- 042: dt: 0.5000, sse=1566081.6, rms=5.101 (2.989%)
- 043: dt: 0.5000, sse=1533874.6, rms=4.993 (2.124%)
- 044: dt: 0.5000, sse=1510165.9, rms=4.906 (1.750%)
- 045: dt: 0.5000, sse=1494263.8, rms=4.851 (1.110%)
- rms = 4.81, time step reduction 1 of 3 to 0.250...
- 046: dt: 0.5000, sse=1484076.0, rms=4.811 (0.825%)
- 047: dt: 0.2500, sse=1404996.4, rms=4.471 (7.066%)
- 048: dt: 0.2500, sse=1383657.0, rms=4.385 (1.925%)
- rms = 4.38, time step reduction 2 of 3 to 0.125...
- 049: dt: 0.2500, sse=1384212.0, rms=4.385 (0.004%)
- 050: dt: 0.1250, sse=1371120.0, rms=4.328 (1.297%)
- rms = 4.31, time step reduction 3 of 3 to 0.062...
- 051: dt: 0.1250, sse=1367736.5, rms=4.314 (0.316%)
- positioning took 3.0 minutes
- mean border=43.5, 2173 (31) missing vertices, mean dist 0.1 [0.2 (%54.7)->0.7 (%45.3))]
- %19 local maxima, %43 large gradients and %33 min vals, 204 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1596548.4, rms=4.435
- 052: dt: 0.5000, sse=1499448.2, rms=4.038 (8.955%)
- 053: dt: 0.5000, sse=1475533.0, rms=3.960 (1.920%)
- rms = 4.01, time step reduction 1 of 3 to 0.250...
- 054: dt: 0.2500, sse=1399836.1, rms=3.569 (9.884%)
- 055: dt: 0.2500, sse=1381952.8, rms=3.465 (2.910%)
- rms = 3.50, time step reduction 2 of 3 to 0.125...
- rms = 3.42, time step reduction 3 of 3 to 0.062...
- 056: dt: 0.1250, sse=1374654.1, rms=3.424 (1.171%)
- positioning took 1.0 minutes
- mean border=42.5, 2498 (26) missing vertices, mean dist 0.1 [0.2 (%51.5)->0.5 (%48.5))]
- %32 local maxima, %30 large gradients and %32 min vals, 228 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1476054.4, rms=3.861
- rms = 4.00, time step reduction 1 of 3 to 0.250...
- 057: dt: 0.2500, sse=1428267.4, rms=3.628 (6.026%)
- 058: dt: 0.2500, sse=1408647.0, rms=3.528 (2.763%)
- rms = 3.55, time step reduction 2 of 3 to 0.125...
- rms = 3.50, time step reduction 3 of 3 to 0.062...
- 059: dt: 0.1250, sse=1402853.4, rms=3.497 (0.890%)
- positioning took 0.7 minutes
- mean border=41.6, 4868 (26) missing vertices, mean dist 0.1 [0.2 (%49.3)->0.4 (%50.7))]
- %39 local maxima, %22 large gradients and %30 min vals, 252 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- writing smoothed curvature to lh.curv.pial
- 000: dt: 0.0000, sse=1459682.9, rms=3.757
- rms = 3.78, time step reduction 1 of 3 to 0.250...
- 060: dt: 0.2500, sse=1416561.6, rms=3.543 (5.682%)
- 061: dt: 0.2500, sse=1378016.9, rms=3.354 (5.349%)
- rms = 3.31, time step reduction 2 of 3 to 0.125...
- 062: dt: 0.2500, sse=1367433.5, rms=3.307 (1.396%)
- 063: dt: 0.1250, sse=1341059.1, rms=3.161 (4.419%)
- 064: dt: 0.1250, sse=1330972.0, rms=3.110 (1.606%)
- rms = 3.09, time step reduction 3 of 3 to 0.062...
- 065: dt: 0.1250, sse=1326220.5, rms=3.088 (0.716%)
- positioning took 1.2 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.curv.pial
- writing smoothed area to lh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.area.pial
- vertex spacing 1.03 +- 0.44 (0.08-->6.14) (max @ vno 98045 --> 96891)
- face area 0.42 +- 0.32 (0.00-->5.34)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 150920 vertices processed
- 25000 of 150920 vertices processed
- 50000 of 150920 vertices processed
- 75000 of 150920 vertices processed
- 100000 of 150920 vertices processed
- 125000 of 150920 vertices processed
- 150000 of 150920 vertices processed
- 0 of 150920 vertices processed
- 25000 of 150920 vertices processed
- 50000 of 150920 vertices processed
- 75000 of 150920 vertices processed
- 100000 of 150920 vertices processed
- 125000 of 150920 vertices processed
- 150000 of 150920 vertices processed
- thickness calculation complete, 320:1364 truncations.
- 42092 vertices at 0 distance
- 117161 vertices at 1 distance
- 84924 vertices at 2 distance
- 30435 vertices at 3 distance
- 9543 vertices at 4 distance
- 2977 vertices at 5 distance
- 928 vertices at 6 distance
- 287 vertices at 7 distance
- 111 vertices at 8 distance
- 59 vertices at 9 distance
- 36 vertices at 10 distance
- 24 vertices at 11 distance
- 29 vertices at 12 distance
- 22 vertices at 13 distance
- 17 vertices at 14 distance
- 13 vertices at 15 distance
- 8 vertices at 16 distance
- 6 vertices at 17 distance
- 7 vertices at 18 distance
- 2 vertices at 19 distance
- 5 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.thickness
- positioning took 17.1 minutes
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050731 rh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- 18201 bright wm thresholded.
- 510 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.orig...
- computing class statistics...
- border white: 279703 voxels (1.67%)
- border gray 316576 voxels (1.89%)
- WM (98.0): 97.8 +- 9.6 [70.0 --> 110.0]
- GM (63.0) : 63.2 +- 11.4 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 42.6 (was 70)
- setting MAX_BORDER_WHITE to 113.6 (was 105)
- setting MIN_BORDER_WHITE to 54.0 (was 85)
- setting MAX_CSF to 31.2 (was 40)
- setting MAX_GRAY to 94.4 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 42.6 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 19.8 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=104+-5.2, GM=54+-11.3
- mean inside = 91.8, mean outside = 67.4
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.90 +- 0.24 (0.03-->3.85) (max @ vno 64748 --> 64749)
- face area 0.34 +- 0.15 (0.00-->2.47)
- mean absolute distance = 0.47 +- 0.69
- 2328 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- deleting segment 0 with 4 points - only 0.00% unknown
- deleting segment 1 with 5 points - only 0.00% unknown
- deleting segment 3 with 31 points - only 0.00% unknown
- deleting segment 4 with 245 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 6 with 1 points - only 0.00% unknown
- deleting segment 7 with 7 points - only 0.00% unknown
- deleting segment 8 with 14 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 9 with 1 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 10 with 4 points - only 0.00% unknown
- deleting segment 11 with 5 points - only 0.00% unknown
- mean border=71.1, 181 (181) missing vertices, mean dist 0.3 [0.6 (%13.0)->0.5 (%87.0))]
- %74 local maxima, %22 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.94 +- 0.26 (0.08-->4.10) (max @ vno 107179 --> 105960)
- face area 0.34 +- 0.16 (0.00-->2.41)
- mean absolute distance = 0.28 +- 0.49
- 2231 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3381230.2, rms=9.535
- 001: dt: 0.5000, sse=1678023.2, rms=5.670 (40.539%)
- 002: dt: 0.5000, sse=1326078.4, rms=4.484 (20.907%)
- 003: dt: 0.5000, sse=1288398.6, rms=4.345 (3.098%)
- 004: dt: 0.5000, sse=1232389.8, rms=4.115 (5.300%)
- rms = 4.24, time step reduction 1 of 3 to 0.250...
- 005: dt: 0.2500, sse=955157.2, rms=2.680 (34.873%)
- 006: dt: 0.2500, sse=871226.5, rms=2.033 (24.139%)
- 007: dt: 0.2500, sse=839364.5, rms=1.758 (13.546%)
- 008: dt: 0.2500, sse=834337.6, rms=1.701 (3.231%)
- 009: dt: 0.2500, sse=829533.2, rms=1.649 (3.075%)
- rms = 1.63, time step reduction 2 of 3 to 0.125...
- 010: dt: 0.2500, sse=827982.1, rms=1.630 (1.101%)
- 011: dt: 0.1250, sse=817931.3, rms=1.514 (7.126%)
- rms = 1.50, time step reduction 3 of 3 to 0.062...
- 012: dt: 0.1250, sse=817190.8, rms=1.503 (0.721%)
- positioning took 1.5 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 1 with 4 points - only 0.00% unknown
- deleting segment 2 with 34 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 3 with 2 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 4 with 1 points - only 0.00% unknown
- deleting segment 5 with 133 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 6 with 2 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 7 with 4 points - only 0.00% unknown
- deleting segment 8 with 5 points - only 0.00% unknown
- mean border=74.9, 103 (56) missing vertices, mean dist -0.2 [0.3 (%76.8)->0.2 (%23.2))]
- %82 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.92 +- 0.25 (0.09-->4.15) (max @ vno 107179 --> 105960)
- face area 0.37 +- 0.17 (0.00-->3.08)
- mean absolute distance = 0.21 +- 0.35
- 3085 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1616428.2, rms=5.297
- 013: dt: 0.5000, sse=1183658.5, rms=3.619 (31.667%)
- rms = 4.17, time step reduction 1 of 3 to 0.250...
- 014: dt: 0.2500, sse=970269.7, rms=2.387 (34.053%)
- 015: dt: 0.2500, sse=894861.1, rms=1.782 (25.337%)
- 016: dt: 0.2500, sse=867518.8, rms=1.494 (16.151%)
- rms = 1.45, time step reduction 2 of 3 to 0.125...
- 017: dt: 0.2500, sse=862675.8, rms=1.448 (3.116%)
- 018: dt: 0.1250, sse=853984.2, rms=1.285 (11.275%)
- rms = 1.27, time step reduction 3 of 3 to 0.062...
- 019: dt: 0.1250, sse=848753.0, rms=1.266 (1.445%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 1 with 4 points - only 0.00% unknown
- deleting segment 2 with 38 points - only 0.00% unknown
- deleting segment 4 with 207 points - only 0.00% unknown
- deleting segment 5 with 6 points - only 0.00% unknown
- deleting segment 6 with 7 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 7 with 4 points - only 0.00% unknown
- deleting segment 8 with 5 points - only 0.00% unknown
- mean border=77.6, 101 (39) missing vertices, mean dist -0.1 [0.2 (%73.9)->0.2 (%26.1))]
- %88 local maxima, % 8 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.91 +- 0.25 (0.12-->4.28) (max @ vno 96986 --> 95823)
- face area 0.35 +- 0.16 (0.00-->3.16)
- mean absolute distance = 0.18 +- 0.28
- 3041 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1156018.1, rms=3.623
- rms = 3.77, time step reduction 1 of 3 to 0.250...
- 020: dt: 0.2500, sse=952549.8, rms=2.466 (31.927%)
- 021: dt: 0.2500, sse=851156.4, rms=1.528 (38.053%)
- 022: dt: 0.2500, sse=829652.0, rms=1.326 (13.236%)
- 023: dt: 0.2500, sse=820136.2, rms=1.226 (7.510%)
- rms = 1.22, time step reduction 2 of 3 to 0.125...
- 024: dt: 0.2500, sse=819734.3, rms=1.225 (0.090%)
- 025: dt: 0.1250, sse=813206.9, rms=1.116 (8.879%)
- rms = 1.11, time step reduction 3 of 3 to 0.062...
- 026: dt: 0.1250, sse=811552.6, rms=1.113 (0.282%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- deleting segment 0 with 4 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 1 with 4 points - only 0.00% unknown
- deleting segment 2 with 37 points - only 0.00% unknown
- deleting segment 4 with 214 points - only 0.00% unknown
- deleting segment 5 with 6 points - only 0.00% unknown
- deleting segment 6 with 9 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 7 with 1 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 8 with 4 points - only 0.00% unknown
- deleting segment 9 with 5 points - only 0.00% unknown
- mean border=78.6, 114 (36) missing vertices, mean dist -0.0 [0.2 (%58.4)->0.2 (%41.6))]
- %90 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=847828.1, rms=1.727
- rms = 2.55, time step reduction 1 of 3 to 0.250...
- 027: dt: 0.2500, sse=795784.7, rms=1.068 (38.153%)
- 028: dt: 0.2500, sse=786833.5, rms=0.867 (18.837%)
- rms = 0.86, time step reduction 2 of 3 to 0.125...
- 029: dt: 0.2500, sse=782240.5, rms=0.862 (0.592%)
- rms = 0.84, time step reduction 3 of 3 to 0.062...
- 030: dt: 0.1250, sse=783681.1, rms=0.836 (2.962%)
- positioning took 0.6 minutes
- generating cortex label...
- 11 non-cortical segments detected
- only using segment with 7700 vertices
- erasing segment 1 (vno[0] = 55047)
- erasing segment 2 (vno[0] = 77365)
- erasing segment 3 (vno[0] = 81414)
- erasing segment 4 (vno[0] = 91095)
- erasing segment 5 (vno[0] = 94812)
- erasing segment 6 (vno[0] = 101425)
- erasing segment 7 (vno[0] = 101532)
- erasing segment 8 (vno[0] = 104728)
- erasing segment 9 (vno[0] = 105877)
- erasing segment 10 (vno[0] = 110378)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.area
- vertex spacing 0.91 +- 0.25 (0.03-->4.28) (max @ vno 95823 --> 96986)
- face area 0.35 +- 0.16 (0.00-->2.99)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 1 with 10 points - only 0.00% unknown
- deleting segment 2 with 58 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- removing 1 vertex label from ripped group
- deleting segment 5 with 1 points - only 0.00% unknown
- deleting segment 8 with 13 points - only 0.00% unknown
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=41.9, 151 (151) missing vertices, mean dist 1.5 [1.6 (%0.0)->2.5 (%100.0))]
- % 7 local maxima, %50 large gradients and %39 min vals, 548 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=41102432.0, rms=37.330
- 001: dt: 0.0500, sse=35875600.0, rms=34.828 (6.701%)
- 002: dt: 0.0500, sse=32110762.0, rms=32.909 (5.511%)
- 003: dt: 0.0500, sse=29224440.0, rms=31.358 (4.714%)
- 004: dt: 0.0500, sse=26887270.0, rms=30.043 (4.193%)
- 005: dt: 0.0500, sse=24921538.0, rms=28.891 (3.835%)
- 006: dt: 0.0500, sse=23220724.0, rms=27.855 (3.584%)
- 007: dt: 0.0500, sse=21719062.0, rms=26.908 (3.401%)
- 008: dt: 0.0500, sse=20374234.0, rms=26.030 (3.262%)
- 009: dt: 0.0500, sse=19156732.0, rms=25.209 (3.154%)
- 010: dt: 0.0500, sse=18045550.0, rms=24.436 (3.068%)
- positioning took 1.1 minutes
- mean border=41.8, 108 (84) missing vertices, mean dist 1.2 [1.8 (%0.0)->2.0 (%100.0))]
- % 7 local maxima, %50 large gradients and %39 min vals, 515 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=18720838.0, rms=24.908
- 011: dt: 0.0500, sse=17697090.0, rms=24.187 (2.892%)
- 012: dt: 0.0500, sse=16751784.0, rms=23.503 (2.831%)
- 013: dt: 0.0500, sse=15876628.0, rms=22.850 (2.775%)
- 014: dt: 0.0500, sse=15064740.0, rms=22.228 (2.723%)
- 015: dt: 0.0500, sse=14310824.0, rms=21.634 (2.672%)
- 016: dt: 0.0500, sse=13610481.0, rms=21.067 (2.620%)
- 017: dt: 0.0500, sse=12959731.0, rms=20.526 (2.567%)
- 018: dt: 0.0500, sse=12354999.0, rms=20.010 (2.513%)
- 019: dt: 0.0500, sse=11792185.0, rms=19.518 (2.461%)
- 020: dt: 0.0500, sse=11268906.0, rms=19.049 (2.405%)
- positioning took 1.1 minutes
- mean border=41.7, 104 (62) missing vertices, mean dist 1.0 [0.1 (%0.7)->1.7 (%99.3))]
- % 7 local maxima, %50 large gradients and %38 min vals, 502 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=11352971.0, rms=19.130
- 021: dt: 0.0500, sse=10855976.0, rms=18.675 (2.377%)
- 022: dt: 0.0500, sse=10394104.0, rms=18.242 (2.318%)
- 023: dt: 0.0500, sse=9962112.0, rms=17.828 (2.272%)
- 024: dt: 0.0500, sse=9560089.0, rms=17.433 (2.214%)
- 025: dt: 0.0500, sse=9185730.0, rms=17.057 (2.156%)
- 026: dt: 0.0500, sse=8836254.0, rms=16.699 (2.103%)
- 027: dt: 0.0500, sse=8508061.0, rms=16.355 (2.060%)
- 028: dt: 0.0500, sse=8197160.5, rms=16.022 (2.035%)
- 029: dt: 0.0500, sse=7901963.0, rms=15.699 (2.014%)
- 030: dt: 0.0500, sse=7621563.5, rms=15.386 (1.993%)
- positioning took 1.1 minutes
- mean border=41.6, 130 (56) missing vertices, mean dist 0.8 [0.1 (%10.2)->1.5 (%89.8))]
- % 7 local maxima, %50 large gradients and %38 min vals, 442 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=7687022.0, rms=15.460
- 031: dt: 0.5000, sse=5753817.5, rms=13.114 (15.175%)
- 032: dt: 0.5000, sse=4456265.0, rms=11.260 (14.139%)
- 033: dt: 0.5000, sse=3515525.2, rms=9.697 (13.878%)
- 034: dt: 0.5000, sse=2858133.8, rms=8.427 (13.097%)
- 035: dt: 0.5000, sse=2407359.0, rms=7.432 (11.805%)
- 036: dt: 0.5000, sse=2098486.2, rms=6.660 (10.387%)
- 037: dt: 0.5000, sse=1900912.4, rms=6.119 (8.135%)
- 038: dt: 0.5000, sse=1754846.9, rms=5.681 (7.147%)
- 039: dt: 0.5000, sse=1656007.4, rms=5.371 (5.468%)
- 040: dt: 0.5000, sse=1578590.8, rms=5.108 (4.883%)
- 041: dt: 0.5000, sse=1528768.5, rms=4.937 (3.351%)
- 042: dt: 0.5000, sse=1488472.4, rms=4.789 (2.992%)
- 043: dt: 0.5000, sse=1467516.4, rms=4.716 (1.541%)
- 044: dt: 0.5000, sse=1446666.4, rms=4.634 (1.721%)
- rms = 4.62, time step reduction 1 of 3 to 0.250...
- 045: dt: 0.5000, sse=1441407.4, rms=4.616 (0.396%)
- 046: dt: 0.2500, sse=1345124.0, rms=4.184 (9.352%)
- 047: dt: 0.2500, sse=1322214.0, rms=4.087 (2.332%)
- rms = 4.09, time step reduction 2 of 3 to 0.125...
- rms = 4.06, time step reduction 3 of 3 to 0.062...
- 048: dt: 0.1250, sse=1315688.0, rms=4.057 (0.736%)
- positioning took 2.7 minutes
- mean border=40.7, 2065 (42) missing vertices, mean dist 0.1 [0.2 (%55.5)->0.6 (%44.5))]
- %15 local maxima, %44 large gradients and %35 min vals, 168 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1561078.9, rms=4.262
- 049: dt: 0.5000, sse=1466232.8, rms=3.858 (9.473%)
- 050: dt: 0.5000, sse=1435803.2, rms=3.751 (2.794%)
- rms = 3.82, time step reduction 1 of 3 to 0.250...
- 051: dt: 0.2500, sse=1350263.5, rms=3.280 (12.548%)
- 052: dt: 0.2500, sse=1330017.9, rms=3.152 (3.898%)
- rms = 3.15, time step reduction 2 of 3 to 0.125...
- 053: dt: 0.1250, sse=1321355.6, rms=3.100 (1.655%)
- 054: dt: 0.1250, sse=1309337.0, rms=3.027 (2.365%)
- rms = 3.01, time step reduction 3 of 3 to 0.062...
- 055: dt: 0.1250, sse=1306285.2, rms=3.009 (0.565%)
- positioning took 1.4 minutes
- mean border=39.9, 2358 (41) missing vertices, mean dist 0.1 [0.1 (%57.0)->0.5 (%43.0))]
- %29 local maxima, %32 large gradients and %34 min vals, 201 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1376821.8, rms=3.362
- rms = 3.53, time step reduction 1 of 3 to 0.250...
- 056: dt: 0.2500, sse=1343019.8, rms=3.175 (5.551%)
- 057: dt: 0.2500, sse=1326232.4, rms=3.083 (2.904%)
- rms = 3.10, time step reduction 2 of 3 to 0.125...
- rms = 3.05, time step reduction 3 of 3 to 0.062...
- 058: dt: 0.1250, sse=1321614.8, rms=3.055 (0.928%)
- positioning took 0.8 minutes
- mean border=39.2, 4610 (40) missing vertices, mean dist 0.1 [0.2 (%51.3)->0.4 (%48.7))]
- %36 local maxima, %24 large gradients and %33 min vals, 222 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- writing smoothed curvature to rh.curv.pial
- 000: dt: 0.0000, sse=1366085.4, rms=3.286
- rms = 3.46, time step reduction 1 of 3 to 0.250...
- 059: dt: 0.2500, sse=1334182.9, rms=3.104 (5.527%)
- 060: dt: 0.2500, sse=1312997.4, rms=2.990 (3.658%)
- rms = 2.97, time step reduction 2 of 3 to 0.125...
- 061: dt: 0.2500, sse=1307425.1, rms=2.966 (0.815%)
- 062: dt: 0.1250, sse=1288432.5, rms=2.848 (3.969%)
- rms = 2.81, time step reduction 3 of 3 to 0.062...
- 063: dt: 0.1250, sse=1281671.5, rms=2.812 (1.264%)
- positioning took 1.0 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.curv.pial
- writing smoothed area to rh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.area.pial
- vertex spacing 1.03 +- 0.45 (0.06-->7.90) (max @ vno 100448 --> 100466)
- face area 0.42 +- 0.33 (0.00-->12.85)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 151230 vertices processed
- 25000 of 151230 vertices processed
- 50000 of 151230 vertices processed
- 75000 of 151230 vertices processed
- 100000 of 151230 vertices processed
- 125000 of 151230 vertices processed
- 150000 of 151230 vertices processed
- 0 of 151230 vertices processed
- 25000 of 151230 vertices processed
- 50000 of 151230 vertices processed
- 75000 of 151230 vertices processed
- 100000 of 151230 vertices processed
- 125000 of 151230 vertices processed
- 150000 of 151230 vertices processed
- thickness calculation complete, 350:921 truncations.
- 41026 vertices at 0 distance
- 118787 vertices at 1 distance
- 85119 vertices at 2 distance
- 30362 vertices at 3 distance
- 9630 vertices at 4 distance
- 3081 vertices at 5 distance
- 1079 vertices at 6 distance
- 401 vertices at 7 distance
- 146 vertices at 8 distance
- 62 vertices at 9 distance
- 51 vertices at 10 distance
- 35 vertices at 11 distance
- 17 vertices at 12 distance
- 15 vertices at 13 distance
- 6 vertices at 14 distance
- 5 vertices at 15 distance
- 15 vertices at 16 distance
- 8 vertices at 17 distance
- 16 vertices at 18 distance
- 10 vertices at 19 distance
- 15 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.thickness
- positioning took 17.8 minutes
- PIDs (12477 12480) completed and logs appended.
- #--------------------------------------------
- #@# Surf Volume lh Sun Oct 8 01:42:25 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- mris_calc -o lh.area.mid lh.area add lh.area.pial
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o lh.area.mid lh.area.mid div 2
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0050731 lh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- #@# 0050731 lh 270358
-
- vertexvol Done
- #--------------------------------------------
- #@# Surf Volume rh Sun Oct 8 01:42:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf
- mris_calc -o rh.area.mid rh.area add rh.area.pial
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o rh.area.mid rh.area.mid div 2
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0050731 rh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- #@# 0050731 rh 271383
-
- vertexvol Done
- #--------------------------------------------
- #@# Cortical ribbon mask Sun Oct 8 01:42:34 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon 0050731
- SUBJECTS_DIR is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- loading input data...
- computing distance to left white surface
- computing distance to left pial surface
- computing distance to right white surface
- computing distance to right pial surface
- hemi masks overlap voxels = 225
- writing volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/ribbon.mgz
- mris_volmask took 19.36 minutes
- writing ribbon files
- #-----------------------------------------
- #@# Parcellation Stats lh Sun Oct 8 02:01:55 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050731 lh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050731 lh pial
- #-----------------------------------------
- #@# Parcellation Stats rh Sun Oct 8 02:01:56 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050731 rh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050731 rh pial
- Waiting for PID 20176 of (20176 20179 20182 20185) to complete...
- Waiting for PID 20179 of (20176 20179 20182 20185) to complete...
- Waiting for PID 20182 of (20176 20179 20182 20185) to complete...
- Waiting for PID 20185 of (20176 20179 20182 20185) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050731 lh white
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1993 1389 3991 2.680 0.445 0.115 0.019 18 1.5 bankssts
- 1040 675 1519 2.220 0.536 0.127 0.012 16 0.6 caudalanteriorcingulate
- 3408 2379 6126 2.394 0.519 0.116 0.019 32 2.8 caudalmiddlefrontal
- 2138 1464 2833 1.890 0.444 0.151 0.030 33 2.8 cuneus
- 749 531 2358 3.488 0.721 0.101 0.018 5 0.5 entorhinal
- 5065 3490 10712 2.781 0.538 0.122 0.020 62 4.1 fusiform
- 6175 4188 11747 2.415 0.649 0.128 0.022 75 5.5 inferiorparietal
- 6048 4119 14289 2.901 0.743 0.124 0.022 72 5.7 inferiortemporal
- 1597 1084 2940 2.380 0.823 0.126 0.026 23 1.7 isthmuscingulate
- 8715 5956 13656 2.058 0.599 0.146 0.027 121 9.9 lateraloccipital
- 4373 3053 8994 2.777 0.596 0.138 0.029 63 5.4 lateralorbitofrontal
- 3869 2717 5945 2.143 0.627 0.146 0.031 57 4.9 lingual
- 3348 2351 6628 2.499 0.641 0.130 0.029 57 3.9 medialorbitofrontal
- 5969 4147 15776 3.032 0.785 0.117 0.020 71 5.3 middletemporal
- 1084 664 2049 2.563 0.693 0.068 0.009 4 0.4 parahippocampal
- 2377 1610 3964 2.238 0.535 0.129 0.021 24 2.0 paracentral
- 2547 1805 5082 2.475 0.570 0.121 0.018 28 2.1 parsopercularis
- 1141 781 2772 2.740 0.582 0.125 0.028 17 1.6 parsorbitalis
- 2787 1915 6106 2.650 0.652 0.125 0.021 34 2.3 parstriangularis
- 1869 1291 1848 1.706 0.428 0.146 0.030 25 2.3 pericalcarine
- 6714 4358 9470 1.929 0.605 0.113 0.020 62 5.4 postcentral
- 2067 1429 3778 2.373 0.749 0.149 0.026 35 2.2 posteriorcingulate
- 7367 4806 13599 2.509 0.590 0.102 0.017 57 5.0 precentral
- 6158 4284 10535 2.367 0.583 0.135 0.026 79 6.5 precuneus
- 1560 1037 3602 3.002 0.818 0.129 0.027 24 1.6 rostralanteriorcingulate
- 10025 7035 18345 2.233 0.600 0.137 0.028 147 12.1 rostralmiddlefrontal
- 11884 8309 24592 2.522 0.593 0.120 0.020 121 9.9 superiorfrontal
- 10497 7092 16608 2.070 0.527 0.125 0.022 114 9.3 superiorparietal
- 7207 4882 15476 2.829 0.655 0.111 0.021 77 5.7 superiortemporal
- 6594 4581 11676 2.311 0.565 0.119 0.020 71 5.1 supramarginal
- 418 311 1110 2.502 0.541 0.162 0.035 8 0.6 frontalpole
- 686 503 2892 3.748 0.644 0.123 0.024 8 0.8 temporalpole
- 798 514 1411 2.507 0.479 0.113 0.028 9 0.8 transversetemporal
- 3743 2556 7901 3.090 0.748 0.108 0.025 35 3.3 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050731 lh pial
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1993 1622 3991 2.680 0.445 0.132 0.027 22 2.4 bankssts
- 1040 760 1519 2.220 0.536 0.144 0.032 23 1.5 caudalanteriorcingulate
- 3408 2769 6126 2.394 0.519 0.138 0.027 42 4.3 caudalmiddlefrontal
- 2138 1678 2833 1.890 0.444 0.146 0.035 28 3.6 cuneus
- 749 825 2358 3.488 0.721 0.167 0.038 10 1.2 entorhinal
- 5065 4271 10712 2.781 0.538 0.147 0.035 77 8.4 fusiform
- 6175 5207 11747 2.415 0.649 0.147 0.032 80 8.8 inferiorparietal
- 6048 5412 14289 2.901 0.743 0.147 0.034 81 9.4 inferiortemporal
- 1597 1325 2940 2.380 0.823 0.144 0.042 52 3.1 isthmuscingulate
- 8715 7340 13656 2.058 0.599 0.153 0.035 128 14.1 lateraloccipital
- 4373 3438 8994 2.777 0.596 0.143 0.033 72 6.4 lateralorbitofrontal
- 3869 3124 5945 2.143 0.627 0.143 0.037 64 6.4 lingual
- 3348 3009 6628 2.499 0.641 0.153 0.035 60 5.1 medialorbitofrontal
- 5969 5855 15776 3.032 0.785 0.148 0.031 71 8.3 middletemporal
- 1084 984 2049 2.563 0.693 0.133 0.028 7 1.6 parahippocampal
- 2377 1921 3964 2.238 0.535 0.140 0.033 31 3.6 paracentral
- 2547 2300 5082 2.475 0.570 0.153 0.030 26 3.5 parsopercularis
- 1141 1183 2772 2.740 0.582 0.158 0.036 12 1.9 parsorbitalis
- 2787 2584 6106 2.650 0.652 0.158 0.033 36 4.0 parstriangularis
- 1869 989 1848 1.706 0.428 0.112 0.033 37 2.4 pericalcarine
- 6714 5541 9470 1.929 0.605 0.135 0.026 67 8.1 postcentral
- 2067 1715 3778 2.373 0.749 0.160 0.040 32 3.8 posteriorcingulate
- 7367 5765 13599 2.509 0.590 0.120 0.024 72 8.2 precentral
- 6158 4688 10535 2.367 0.583 0.147 0.035 93 9.6 precuneus
- 1560 1419 3602 3.002 0.818 0.176 0.055 35 4.5 rostralanteriorcingulate
- 10025 9099 18345 2.233 0.600 0.167 0.036 139 16.9 rostralmiddlefrontal
- 11884 10752 24592 2.522 0.593 0.150 0.030 135 16.1 superiorfrontal
- 10497 8790 16608 2.070 0.527 0.147 0.031 124 14.3 superiorparietal
- 7207 5857 15476 2.829 0.655 0.136 0.032 98 10.0 superiortemporal
- 6594 5582 11676 2.311 0.565 0.144 0.031 74 9.1 supramarginal
- 418 589 1110 2.502 0.541 0.248 0.042 6 1.0 frontalpole
- 686 1039 2892 3.748 0.644 0.212 0.043 8 1.6 temporalpole
- 798 675 1411 2.507 0.479 0.139 0.041 10 1.6 transversetemporal
- 3743 2404 7901 3.090 0.748 0.134 0.039 77 6.6 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050731 rh white
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1205 873 2218 2.600 0.485 0.122 0.020 11 1.0 bankssts
- 1087 725 1995 2.374 0.638 0.131 0.014 15 0.6 caudalanteriorcingulate
- 3186 2167 5806 2.468 0.442 0.110 0.016 29 2.2 caudalmiddlefrontal
- 2673 1878 4290 1.994 0.516 0.150 0.028 40 3.1 cuneus
- 594 394 2033 3.554 1.010 0.121 0.052 12 1.1 entorhinal
- 4491 3147 9518 2.836 0.587 0.124 0.024 52 4.7 fusiform
- 9412 6357 15259 2.122 0.521 0.122 0.022 115 8.7 inferiorparietal
- 5862 3998 14305 2.959 0.723 0.127 0.027 78 6.5 inferiortemporal
- 1376 885 2392 2.455 0.925 0.121 0.023 18 1.1 isthmuscingulate
- 10709 7390 17514 2.153 0.533 0.147 0.029 158 13.3 lateraloccipital
- 4536 3191 8784 2.587 0.657 0.144 0.033 78 6.0 lateralorbitofrontal
- 4311 3080 7781 2.335 0.622 0.150 0.034 75 7.2 lingual
- 3150 2157 6271 2.600 0.645 0.122 0.023 43 2.9 medialorbitofrontal
- 5666 3995 14072 2.906 0.681 0.131 0.023 76 5.6 middletemporal
- 1160 797 2025 2.338 0.589 0.097 0.020 8 1.2 parahippocampal
- 2732 1806 4635 2.416 0.587 0.117 0.019 22 2.0 paracentral
- 2138 1458 4396 2.749 0.463 0.109 0.019 20 1.7 parsopercularis
- 1384 971 3699 2.871 0.699 0.154 0.033 26 1.9 parsorbitalis
- 2738 1902 5513 2.622 0.521 0.132 0.023 33 2.5 parstriangularis
- 2188 1547 2231 1.661 0.390 0.140 0.028 25 2.5 pericalcarine
- 6079 4076 8264 1.830 0.606 0.111 0.019 56 4.7 postcentral
- 1967 1363 3876 2.418 0.693 0.147 0.027 32 2.1 posteriorcingulate
- 8105 5348 15245 2.554 0.545 0.106 0.020 64 6.9 precentral
- 6476 4526 11659 2.407 0.575 0.127 0.023 75 6.0 precuneus
- 994 708 2506 3.097 0.646 0.146 0.036 20 1.5 rostralanteriorcingulate
- 9565 6781 16705 2.238 0.507 0.138 0.029 136 12.0 rostralmiddlefrontal
- 12382 8534 27211 2.763 0.576 0.129 0.024 146 11.8 superiorfrontal
- 9289 6242 14385 2.032 0.562 0.123 0.020 98 7.6 superiorparietal
- 6392 4311 13767 2.866 0.604 0.106 0.017 57 4.5 superiortemporal
- 5583 3810 9398 2.288 0.534 0.120 0.021 61 4.7 supramarginal
- 459 315 1352 2.970 0.468 0.159 0.030 9 0.5 frontalpole
- 699 493 2616 3.888 0.580 0.128 0.036 11 0.9 temporalpole
- 710 459 1313 2.318 0.366 0.099 0.017 6 0.5 transversetemporal
- 3658 2505 8325 3.226 0.790 0.120 0.028 39 4.1 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050731 rh pial
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1205 837 2218 2.600 0.485 0.144 0.033 20 1.9 bankssts
- 1087 885 1995 2.374 0.638 0.144 0.034 38 1.3 caudalanteriorcingulate
- 3186 2536 5806 2.468 0.442 0.126 0.024 32 3.3 caudalmiddlefrontal
- 2673 2452 4290 1.994 0.516 0.158 0.037 34 4.5 cuneus
- 594 719 2033 3.554 1.010 0.176 0.062 10 1.4 entorhinal
- 4491 3589 9518 2.836 0.587 0.134 0.035 85 6.8 fusiform
- 9412 7826 15259 2.122 0.521 0.145 0.029 103 13.0 inferiorparietal
- 5862 5461 14305 2.959 0.723 0.153 0.035 95 9.2 inferiortemporal
- 1376 1010 2392 2.455 0.925 0.124 0.030 20 1.6 isthmuscingulate
- 10709 8964 17514 2.153 0.533 0.153 0.034 147 17.2 lateraloccipital
- 4536 3633 8784 2.587 0.657 0.151 0.039 67 7.9 lateralorbitofrontal
- 4311 3791 7781 2.335 0.622 0.149 0.190 316 8.2 lingual
- 3150 2678 6271 2.600 0.645 0.146 0.032 45 4.6 medialorbitofrontal
- 5666 5534 14072 2.906 0.681 0.157 0.032 76 8.2 middletemporal
- 1160 1011 2025 2.338 0.589 0.131 0.032 16 1.8 parahippocampal
- 2732 1994 4635 2.416 0.587 0.126 0.030 35 3.4 paracentral
- 2138 1759 4396 2.749 0.463 0.140 0.028 32 2.7 parsopercularis
- 1384 1564 3699 2.871 0.699 0.186 0.038 18 2.4 parsorbitalis
- 2738 2316 5513 2.622 0.521 0.148 0.032 39 4.0 parstriangularis
- 2188 1307 2231 1.661 0.390 0.123 0.033 30 3.0 pericalcarine
- 6079 5007 8264 1.830 0.606 0.134 0.026 61 7.3 postcentral
- 1967 1738 3876 2.418 0.693 0.166 0.037 27 3.5 posteriorcingulate
- 8105 6358 15245 2.554 0.545 0.121 0.025 89 9.4 precentral
- 6476 5095 11659 2.407 0.575 0.141 0.032 89 9.0 precuneus
- 994 924 2506 3.097 0.646 0.177 0.046 24 1.9 rostralanteriorcingulate
- 9565 8162 16705 2.238 0.507 0.155 0.033 114 15.3 rostralmiddlefrontal
- 12382 10873 27211 2.763 0.576 0.152 0.032 141 18.4 superiorfrontal
- 9289 7671 14385 2.032 0.562 0.143 0.028 101 11.4 superiorparietal
- 6392 5193 13767 2.866 0.604 0.130 0.027 73 7.9 superiortemporal
- 5583 4408 9398 2.288 0.534 0.134 0.030 61 7.4 supramarginal
- 459 594 1352 2.970 0.468 0.210 0.038 5 0.8 frontalpole
- 699 852 2616 3.888 0.580 0.186 0.043 13 1.3 temporalpole
- 710 668 1313 2.318 0.366 0.118 0.021 3 0.6 transversetemporal
- 3658 2452 8325 3.226 0.790 0.142 0.039 62 6.7 insula
- PIDs (20176 20179 20182 20185) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 2 lh Sun Oct 8 02:03:42 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- #-----------------------------------------
- #@# Cortical Parc 2 rh Sun Oct 8 02:03:42 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- Waiting for PID 20319 of (20319 20322) to complete...
- Waiting for PID 20322 of (20319 20322) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 2.9 using min determinant for regularization = 0.086
- 0 singular and 762 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 107 labels changed using aseg
- relabeling using gibbs priors...
- 000: 9820 changed, 150920 examined...
- 001: 2371 changed, 38272 examined...
- 002: 673 changed, 12227 examined...
- 003: 305 changed, 3912 examined...
- 004: 156 changed, 1801 examined...
- 005: 80 changed, 911 examined...
- 006: 56 changed, 513 examined...
- 007: 23 changed, 300 examined...
- 008: 15 changed, 130 examined...
- 009: 13 changed, 80 examined...
- 010: 6 changed, 65 examined...
- 011: 5 changed, 38 examined...
- 012: 5 changed, 22 examined...
- 013: 3 changed, 24 examined...
- 014: 0 changed, 21 examined...
- 46 labels changed using aseg
- 000: 283 total segments, 196 labels (3228 vertices) changed
- 001: 103 total segments, 16 labels (50 vertices) changed
- 002: 87 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 30 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1152 vertices marked for relabeling...
- 1152 labels changed in reclassification.
- writing output to ../label/lh.aparc.a2009s.annot...
- classification took 0 minutes and 24 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 719 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 26 labels changed using aseg
- relabeling using gibbs priors...
- 000: 9833 changed, 151230 examined...
- 001: 2219 changed, 38760 examined...
- 002: 634 changed, 11655 examined...
- 003: 260 changed, 3571 examined...
- 004: 118 changed, 1443 examined...
- 005: 55 changed, 657 examined...
- 006: 23 changed, 304 examined...
- 007: 9 changed, 108 examined...
- 008: 8 changed, 65 examined...
- 009: 4 changed, 48 examined...
- 010: 2 changed, 19 examined...
- 011: 2 changed, 10 examined...
- 012: 0 changed, 10 examined...
- 6 labels changed using aseg
- 000: 283 total segments, 198 labels (3327 vertices) changed
- 001: 95 total segments, 11 labels (33 vertices) changed
- 002: 84 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 37 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1059 vertices marked for relabeling...
- 1059 labels changed in reclassification.
- writing output to ../label/rh.aparc.a2009s.annot...
- classification took 0 minutes and 24 seconds.
- PIDs (20319 20322) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 2 lh Sun Oct 8 02:04:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050731 lh white
- #-----------------------------------------
- #@# Parcellation Stats 2 rh Sun Oct 8 02:04:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050731 rh white
- Waiting for PID 20382 of (20382 20385) to complete...
- Waiting for PID 20385 of (20382 20385) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050731 lh white
- computing statistics for each annotation in ../label/lh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1210 910 2162 2.187 0.453 0.129 0.025 12 1.3 G&S_frontomargin
- 1767 1198 2982 2.259 0.527 0.140 0.027 22 1.9 G&S_occipital_inf
- 1843 1167 2931 2.117 0.586 0.124 0.028 20 2.1 G&S_paracentral
- 1520 1024 3089 2.672 0.506 0.130 0.021 16 1.2 G&S_subcentral
- 1067 741 2457 2.414 0.555 0.155 0.033 20 1.7 G&S_transv_frontopol
- 3023 2085 6195 2.766 0.651 0.123 0.023 39 2.8 G&S_cingul-Ant
- 1352 913 2180 2.428 0.508 0.101 0.012 11 0.6 G&S_cingul-Mid-Ant
- 1696 1193 3164 2.437 0.629 0.145 0.029 24 1.9 G&S_cingul-Mid-Post
- 723 529 2097 2.879 0.645 0.164 0.033 14 1.0 G_cingul-Post-dorsal
- 359 239 740 2.658 0.846 0.148 0.037 7 0.4 G_cingul-Post-ventral
- 1983 1391 2802 1.861 0.475 0.161 0.030 33 2.6 G_cuneus
- 1407 983 3579 2.740 0.551 0.132 0.022 21 1.3 G_front_inf-Opercular
- 645 414 1739 2.859 0.585 0.147 0.024 13 0.7 G_front_inf-Orbital
- 1443 1029 3831 2.751 0.679 0.146 0.030 25 1.8 G_front_inf-Triangul
- 4751 3384 10979 2.426 0.662 0.145 0.030 86 6.3 G_front_middle
- 8346 5838 19344 2.607 0.606 0.133 0.024 112 8.2 G_front_sup
- 738 516 1767 3.370 0.666 0.131 0.034 10 0.8 G_Ins_lg&S_cent_ins
- 926 618 2728 3.470 0.878 0.120 0.034 15 1.2 G_insular_short
- 2405 1573 4825 2.326 0.636 0.145 0.028 39 2.8 G_occipital_middle
- 1784 1218 3549 2.242 0.681 0.138 0.027 24 1.7 G_occipital_sup
- 2184 1448 5476 3.022 0.505 0.137 0.023 38 1.9 G_oc-temp_lat-fusifor
- 2811 1952 4410 2.022 0.625 0.160 0.037 50 4.3 G_oc-temp_med-Lingual
- 1419 943 3651 3.045 0.815 0.088 0.018 9 0.8 G_oc-temp_med-Parahip
- 2678 1849 6889 2.704 0.659 0.152 0.041 54 4.9 G_orbital
- 2863 1900 7887 2.863 0.769 0.143 0.026 51 3.0 G_pariet_inf-Angular
- 3095 2194 6520 2.398 0.656 0.131 0.023 42 3.0 G_pariet_inf-Supramar
- 4443 2973 7688 2.112 0.526 0.127 0.024 56 4.4 G_parietal_sup
- 2807 1741 4190 1.929 0.553 0.121 0.024 33 2.6 G_postcentral
- 2575 1639 6263 2.772 0.566 0.109 0.016 25 1.7 G_precentral
- 3126 2191 6110 2.303 0.616 0.143 0.025 48 3.4 G_precuneus
- 952 677 2302 2.463 0.592 0.135 0.028 17 1.4 G_rectus
- 834 528 1586 2.511 0.890 0.112 0.050 11 1.2 G_subcallosal
- 589 370 1142 2.523 0.454 0.117 0.037 10 0.4 G_temp_sup-G_T_transv
- 2345 1587 6509 2.999 0.615 0.135 0.028 39 2.4 G_temp_sup-Lateral
- 1023 692 2842 3.503 0.677 0.081 0.017 5 0.7 G_temp_sup-Plan_polar
- 1093 778 2109 2.419 0.542 0.095 0.016 10 0.6 G_temp_sup-Plan_tempo
- 3034 2075 9133 3.095 0.821 0.138 0.026 52 3.3 G_temporal_inf
- 3462 2396 11237 3.258 0.763 0.128 0.022 54 3.0 G_temporal_middle
- 420 286 740 2.467 0.578 0.123 0.016 5 0.3 Lat_Fis-ant-Horizont
- 400 285 572 2.230 0.623 0.096 0.011 2 0.1 Lat_Fis-ant-Vertical
- 1164 772 1513 2.498 0.519 0.119 0.025 11 1.2 Lat_Fis-post
- 2646 1857 3779 1.813 0.578 0.163 0.033 46 3.7 Pole_occipital
- 1650 1219 6243 3.455 0.761 0.140 0.028 25 2.1 Pole_temporal
- 2448 1682 2877 2.070 0.734 0.134 0.025 28 2.5 S_calcarine
- 2801 1875 3057 1.821 0.578 0.094 0.015 15 1.7 S_central
- 1139 787 1513 2.106 0.480 0.120 0.019 10 0.9 S_cingul-Marginalis
- 580 403 1049 3.347 0.652 0.096 0.012 3 0.3 S_circular_insula_ant
- 1491 998 2273 2.674 0.406 0.081 0.011 5 0.7 S_circular_insula_inf
- 1963 1316 2912 2.721 0.426 0.094 0.014 8 1.2 S_circular_insula_sup
- 997 680 1581 2.675 0.510 0.098 0.013 5 0.6 S_collat_transv_ant
- 438 314 512 2.081 0.384 0.154 0.028 5 0.6 S_collat_transv_post
- 2820 1959 3911 2.150 0.468 0.114 0.017 23 2.1 S_front_inf
- 2156 1506 3289 2.141 0.523 0.133 0.025 27 2.2 S_front_middle
- 3166 2160 4738 2.196 0.458 0.105 0.019 23 2.3 S_front_sup
- 507 358 634 2.108 0.358 0.105 0.012 3 0.3 S_interm_prim-Jensen
- 3594 2442 4730 2.014 0.442 0.117 0.018 29 2.6 S_intrapariet&P_trans
- 1037 746 1294 1.938 0.393 0.130 0.021 9 0.9 S_oc_middle&Lunatus
- 1145 781 1573 2.020 0.433 0.118 0.018 9 1.0 S_oc_sup&transversal
- 786 522 904 2.116 0.429 0.113 0.022 6 0.6 S_occipital_ant
- 1404 962 2131 2.399 0.349 0.102 0.017 10 1.0 S_oc-temp_lat
- 1834 1304 2910 2.541 0.448 0.095 0.011 10 0.8 S_oc-temp_med&Lingual
- 695 497 1018 2.163 0.573 0.108 0.014 5 0.4 S_orbital_lateral
- 856 616 1255 2.530 0.465 0.118 0.013 6 0.5 S_orbital_med-olfact
- 1502 1076 3030 2.881 0.489 0.132 0.024 17 1.5 S_orbital-H_Shaped
- 2427 1675 3618 2.302 0.486 0.120 0.025 22 2.3 S_parieto_occipital
- 1348 830 1194 1.817 0.846 0.127 0.014 23 0.8 S_pericallosal
- 3913 2603 4796 1.970 0.411 0.105 0.018 27 2.7 S_postcentral
- 1676 1159 2477 2.403 0.452 0.097 0.012 9 0.8 S_precentral-inf-part
- 1480 1010 2085 2.248 0.430 0.083 0.010 5 0.6 S_precentral-sup-part
- 654 460 926 2.322 0.649 0.129 0.017 9 0.5 S_suborbital
- 908 637 1249 2.266 0.399 0.122 0.025 9 0.9 S_subparietal
- 2145 1470 3292 2.737 0.552 0.110 0.016 13 1.6 S_temporal_inf
- 6981 4802 10969 2.500 0.499 0.109 0.018 52 5.4 S_temporal_sup
- 520 354 632 2.255 0.508 0.134 0.017 5 0.5 S_temporal_transverse
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050731 rh white
- computing statistics for each annotation in ../label/rh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 971 680 1649 2.192 0.570 0.127 0.024 14 0.9 G&S_frontomargin
- 1902 1295 3606 2.473 0.554 0.136 0.027 23 2.1 G&S_occipital_inf
- 1790 1133 3018 2.226 0.649 0.117 0.029 18 2.5 G&S_paracentral
- 1514 1025 2985 2.566 0.555 0.139 0.025 19 1.5 G&S_subcentral
- 1159 882 2631 2.422 0.525 0.165 0.035 26 1.8 G&S_transv_frontopol
- 3255 2307 6651 2.724 0.541 0.122 0.024 41 3.3 G&S_cingul-Ant
- 1164 824 2347 2.661 0.441 0.110 0.013 9 0.6 G&S_cingul-Mid-Ant
- 1596 1110 2928 2.514 0.464 0.135 0.028 21 1.7 G&S_cingul-Mid-Post
- 510 344 1432 2.934 0.760 0.150 0.032 9 0.6 G_cingul-Post-dorsal
- 348 224 993 3.123 0.705 0.136 0.030 5 0.4 G_cingul-Post-ventral
- 2485 1780 3880 1.889 0.510 0.158 0.030 39 3.1 G_cuneus
- 1433 990 3807 2.858 0.496 0.134 0.026 22 1.4 G_front_inf-Opercular
- 476 324 1459 2.987 0.541 0.157 0.026 9 0.5 G_front_inf-Orbital
- 1137 809 2897 2.741 0.516 0.147 0.027 18 1.3 G_front_inf-Triangul
- 4498 3136 10023 2.455 0.518 0.155 0.034 86 7.0 G_front_middle
- 8542 5786 21369 2.925 0.568 0.137 0.026 116 8.8 G_front_sup
- 616 440 1682 3.587 0.841 0.125 0.035 8 0.8 G_Ins_lg&S_cent_ins
- 947 628 2873 3.379 1.012 0.139 0.041 17 1.7 G_insular_short
- 3957 2697 7435 2.265 0.445 0.152 0.031 74 5.3 G_occipital_middle
- 2278 1543 4957 2.389 0.773 0.143 0.026 31 2.4 G_occipital_sup
- 2111 1386 5508 3.060 0.586 0.135 0.022 34 1.9 G_oc-temp_lat-fusifor
- 2702 1888 5352 2.367 0.701 0.154 0.032 45 3.7 G_oc-temp_med-Lingual
- 1138 752 3150 3.092 1.074 0.099 0.026 13 0.9 G_oc-temp_med-Parahip
- 3060 2203 8000 2.764 0.746 0.155 0.038 67 4.6 G_orbital
- 3545 2313 6107 2.105 0.537 0.134 0.028 54 4.0 G_pariet_inf-Angular
- 2780 1909 6078 2.495 0.575 0.137 0.026 45 2.8 G_pariet_inf-Supramar
- 2710 1811 4471 2.047 0.487 0.138 0.025 39 2.6 G_parietal_sup
- 2097 1379 3208 1.851 0.572 0.121 0.023 24 2.1 G_postcentral
- 2965 1911 7166 2.788 0.432 0.107 0.018 26 2.3 G_precentral
- 2332 1630 5349 2.516 0.623 0.134 0.023 33 2.3 G_precuneus
- 826 612 2310 2.676 0.767 0.158 0.037 17 1.4 G_rectus
- 572 355 1111 2.849 0.946 0.092 0.034 7 0.5 G_subcallosal
- 617 384 1165 2.323 0.376 0.105 0.016 6 0.4 G_temp_sup-G_T_transv
- 2157 1465 6023 3.084 0.551 0.137 0.026 32 2.3 G_temp_sup-Lateral
- 771 560 2214 3.486 0.838 0.079 0.014 2 0.4 G_temp_sup-Plan_polar
- 874 594 1495 2.351 0.421 0.064 0.008 3 0.3 G_temp_sup-Plan_tempo
- 3120 2111 9271 3.155 0.770 0.142 0.035 54 4.4 G_temporal_inf
- 3403 2437 9805 2.941 0.720 0.144 0.027 59 4.0 G_temporal_middle
- 467 312 570 2.248 0.472 0.090 0.008 2 0.2 Lat_Fis-ant-Horizont
- 359 243 537 2.715 0.533 0.123 0.020 3 0.3 Lat_Fis-ant-Vertical
- 1489 995 2034 2.378 0.454 0.111 0.016 11 1.0 Lat_Fis-post
- 4278 3021 6190 1.814 0.475 0.164 0.034 80 6.2 Pole_occipital
- 2115 1454 6589 3.368 0.542 0.143 0.038 36 3.5 Pole_temporal
- 2287 1594 2876 2.125 0.642 0.135 0.025 25 2.3 S_calcarine
- 3166 2112 3447 1.840 0.596 0.092 0.014 18 1.8 S_central
- 1541 1056 2239 2.256 0.530 0.123 0.021 13 1.4 S_cingul-Marginalis
- 678 460 1117 3.105 0.571 0.118 0.020 4 0.7 S_circular_insula_ant
- 1228 849 2053 2.888 0.555 0.086 0.010 5 0.6 S_circular_insula_inf
- 1478 1021 2259 2.793 0.361 0.104 0.018 7 1.1 S_circular_insula_sup
- 886 664 1729 2.827 0.558 0.119 0.020 7 0.7 S_collat_transv_ant
- 435 298 555 2.264 0.361 0.139 0.033 4 0.6 S_collat_transv_post
- 2288 1629 3404 2.218 0.389 0.121 0.021 20 1.8 S_front_inf
- 2280 1630 3215 2.109 0.408 0.122 0.021 21 2.0 S_front_middle
- 3086 2129 4726 2.303 0.435 0.105 0.016 23 2.1 S_front_sup
- 470 325 650 2.084 0.353 0.100 0.015 3 0.3 S_interm_prim-Jensen
- 3527 2390 4266 1.856 0.380 0.104 0.015 23 2.1 S_intrapariet&P_trans
- 1580 1086 2003 2.157 0.438 0.116 0.019 13 1.2 S_oc_middle&Lunatus
- 1670 1122 1944 1.958 0.389 0.113 0.021 12 1.5 S_oc_sup&transversal
- 884 650 1222 2.214 0.353 0.142 0.026 11 1.1 S_occipital_ant
- 1251 856 2001 2.612 0.469 0.096 0.015 7 0.8 S_oc-temp_lat
- 2304 1734 3452 2.384 0.457 0.113 0.031 24 4.3 S_oc-temp_med&Lingual
- 645 456 908 2.275 0.498 0.148 0.032 8 1.0 S_orbital_lateral
- 913 628 1368 2.534 0.610 0.111 0.016 7 0.6 S_orbital_med-olfact
- 1687 1174 2742 2.451 0.546 0.142 0.032 24 2.3 S_orbital-H_Shaped
- 3122 2110 4315 2.242 0.480 0.116 0.019 27 2.3 S_parieto_occipital
- 1642 973 1392 1.856 0.745 0.124 0.015 26 0.8 S_pericallosal
- 2859 1943 3156 1.820 0.417 0.104 0.015 19 1.7 S_postcentral
- 1733 1149 2521 2.556 0.364 0.087 0.012 8 0.9 S_precentral-inf-part
- 1799 1240 2585 2.325 0.488 0.100 0.014 9 1.1 S_precentral-sup-part
- 382 268 529 2.532 0.410 0.122 0.010 3 0.1 S_suborbital
- 1358 994 2523 2.512 0.535 0.134 0.025 16 1.2 S_subparietal
- 1815 1220 2601 2.519 0.439 0.097 0.014 11 1.0 S_temporal_inf
- 6409 4419 10658 2.508 0.659 0.104 0.016 44 4.0 S_temporal_sup
- 512 342 600 2.291 0.407 0.096 0.010 3 0.2 S_temporal_transverse
- PIDs (20382 20385) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 3 lh Sun Oct 8 02:05:02 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- #-----------------------------------------
- #@# Cortical Parc 3 rh Sun Oct 8 02:05:02 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- Waiting for PID 20461 of (20461 20464) to complete...
- Waiting for PID 20464 of (20461 20464) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 383 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1424 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2198 changed, 150920 examined...
- 001: 505 changed, 9942 examined...
- 002: 138 changed, 2859 examined...
- 003: 50 changed, 824 examined...
- 004: 26 changed, 312 examined...
- 005: 17 changed, 165 examined...
- 006: 15 changed, 111 examined...
- 007: 14 changed, 82 examined...
- 008: 11 changed, 75 examined...
- 009: 10 changed, 63 examined...
- 010: 12 changed, 65 examined...
- 011: 10 changed, 68 examined...
- 012: 9 changed, 55 examined...
- 013: 7 changed, 48 examined...
- 014: 8 changed, 43 examined...
- 015: 9 changed, 42 examined...
- 016: 5 changed, 42 examined...
- 017: 5 changed, 30 examined...
- 018: 4 changed, 32 examined...
- 019: 3 changed, 25 examined...
- 020: 0 changed, 22 examined...
- 357 labels changed using aseg
- 000: 48 total segments, 15 labels (91 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 7 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 700 vertices marked for relabeling...
- 700 labels changed in reclassification.
- writing output to ../label/lh.aparc.DKTatlas.annot...
- classification took 0 minutes and 19 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050731 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.9 using min determinant for regularization = 0.009
- 0 singular and 325 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1337 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2172 changed, 151230 examined...
- 001: 507 changed, 10084 examined...
- 002: 136 changed, 2925 examined...
- 003: 65 changed, 810 examined...
- 004: 28 changed, 377 examined...
- 005: 12 changed, 180 examined...
- 006: 8 changed, 74 examined...
- 007: 4 changed, 40 examined...
- 008: 9 changed, 28 examined...
- 009: 4 changed, 40 examined...
- 010: 2 changed, 25 examined...
- 011: 2 changed, 14 examined...
- 012: 3 changed, 14 examined...
- 013: 5 changed, 17 examined...
- 014: 5 changed, 25 examined...
- 015: 3 changed, 19 examined...
- 016: 5 changed, 21 examined...
- 017: 2 changed, 24 examined...
- 018: 1 changed, 12 examined...
- 019: 1 changed, 6 examined...
- 020: 2 changed, 6 examined...
- 021: 3 changed, 12 examined...
- 022: 1 changed, 17 examined...
- 023: 0 changed, 7 examined...
- 304 labels changed using aseg
- 000: 51 total segments, 18 labels (118 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 6 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 813 vertices marked for relabeling...
- 813 labels changed in reclassification.
- writing output to ../label/rh.aparc.DKTatlas.annot...
- classification took 0 minutes and 19 seconds.
- PIDs (20461 20464) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 3 lh Sun Oct 8 02:05:21 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050731 lh white
- #-----------------------------------------
- #@# Parcellation Stats 3 rh Sun Oct 8 02:05:21 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050731 rh white
- Waiting for PID 20515 of (20515 20518) to complete...
- Waiting for PID 20518 of (20515 20518) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050731 lh white
- computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1723 1126 2796 2.380 0.606 0.120 0.013 22 1.0 caudalanteriorcingulate
- 3647 2541 6694 2.404 0.529 0.116 0.019 34 3.0 caudalmiddlefrontal
- 2908 2007 3973 1.940 0.462 0.144 0.028 39 3.4 cuneus
- 617 444 1990 3.529 0.690 0.100 0.019 4 0.4 entorhinal
- 4711 3233 9944 2.782 0.536 0.122 0.020 58 3.8 fusiform
- 6343 4279 12124 2.424 0.655 0.127 0.022 77 5.6 inferiorparietal
- 5950 4086 13977 2.878 0.726 0.123 0.022 72 5.3 inferiortemporal
- 1598 1077 2977 2.414 0.828 0.126 0.026 23 1.7 isthmuscingulate
- 8710 5960 13658 2.056 0.594 0.146 0.028 121 9.7 lateraloccipital
- 4705 3339 9803 2.722 0.629 0.142 0.033 69 6.3 lateralorbitofrontal
- 4042 2830 6165 2.137 0.630 0.147 0.031 61 5.2 lingual
- 2638 1887 5280 2.426 0.649 0.129 0.028 43 3.1 medialorbitofrontal
- 7881 5475 19587 2.946 0.757 0.120 0.020 90 7.2 middletemporal
- 1128 702 2188 2.597 0.703 0.071 0.010 4 0.4 parahippocampal
- 2844 1929 4788 2.275 0.534 0.127 0.021 27 2.4 paracentral
- 2450 1724 4933 2.498 0.572 0.124 0.019 28 2.0 parsopercularis
- 1214 810 2578 2.695 0.552 0.114 0.018 14 0.9 parsorbitalis
- 3144 2149 6564 2.592 0.657 0.121 0.019 36 2.4 parstriangularis
- 1837 1266 1798 1.695 0.410 0.148 0.030 25 2.3 pericalcarine
- 7698 5033 10785 1.958 0.608 0.115 0.021 72 6.2 postcentral
- 2267 1570 4125 2.351 0.743 0.148 0.027 36 2.5 posteriorcingulate
- 7220 4700 13242 2.525 0.590 0.103 0.017 56 5.0 precentral
- 6177 4316 10889 2.362 0.587 0.135 0.025 82 6.5 precuneus
- 2052 1375 4604 2.980 0.788 0.131 0.026 32 2.1 rostralanteriorcingulate
- 7640 5385 14461 2.241 0.633 0.139 0.029 115 10.0 rostralmiddlefrontal
- 13000 9071 26676 2.481 0.580 0.124 0.022 150 11.7 superiorfrontal
- 8652 5795 13681 2.075 0.532 0.121 0.021 90 7.5 superiorparietal
- 9287 6331 21258 2.896 0.688 0.113 0.022 98 7.6 superiortemporal
- 6027 4191 10455 2.281 0.555 0.121 0.020 65 4.9 supramarginal
- 777 499 1374 2.497 0.471 0.113 0.028 9 0.8 transversetemporal
- 3125 2167 6987 3.142 0.735 0.105 0.021 29 2.5 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050731 rh white
- computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1174 779 2128 2.382 0.638 0.131 0.014 16 0.6 caudalanteriorcingulate
- 3342 2276 6078 2.469 0.446 0.110 0.017 31 2.3 caudalmiddlefrontal
- 3458 2414 5216 1.949 0.477 0.143 0.026 47 3.9 cuneus
- 403 281 1642 4.003 0.782 0.114 0.049 5 0.7 entorhinal
- 4180 2891 8597 2.819 0.590 0.118 0.021 45 3.7 fusiform
- 9367 6342 14933 2.108 0.510 0.122 0.022 113 8.8 inferiorparietal
- 6239 4298 15329 2.956 0.714 0.128 0.027 83 6.9 inferiortemporal
- 1390 892 2381 2.410 0.927 0.121 0.024 18 1.1 isthmuscingulate
- 10901 7502 17845 2.148 0.536 0.148 0.029 162 13.4 lateraloccipital
- 4843 3433 9699 2.545 0.654 0.144 0.033 87 6.4 lateralorbitofrontal
- 4264 3054 7694 2.338 0.619 0.151 0.030 70 5.6 lingual
- 2306 1604 5062 2.691 0.725 0.123 0.025 32 2.4 medialorbitofrontal
- 6509 4601 15603 2.873 0.659 0.130 0.023 83 6.3 middletemporal
- 1256 861 2139 2.319 0.605 0.106 0.041 18 3.2 parahippocampal
- 2843 1876 4977 2.457 0.608 0.116 0.018 23 2.1 paracentral
- 2509 1721 4993 2.737 0.462 0.113 0.021 23 2.0 parsopercularis
- 1243 857 3054 2.769 0.666 0.137 0.025 18 1.5 parsorbitalis
- 2659 1855 5259 2.540 0.547 0.133 0.022 33 2.5 parstriangularis
- 2160 1515 2197 1.665 0.387 0.137 0.027 25 2.3 pericalcarine
- 6791 4536 9137 1.848 0.608 0.113 0.019 65 5.3 postcentral
- 2038 1418 3978 2.437 0.706 0.148 0.028 33 2.3 posteriorcingulate
- 7745 5108 14716 2.563 0.535 0.106 0.020 62 6.7 precentral
- 6626 4627 12311 2.443 0.561 0.128 0.023 76 6.1 precuneus
- 1314 927 2942 2.954 0.698 0.143 0.034 24 1.8 rostralanteriorcingulate
- 7050 4961 12770 2.284 0.545 0.144 0.031 108 9.7 rostralmiddlefrontal
- 15427 10655 32485 2.671 0.585 0.128 0.023 185 14.6 superiorfrontal
- 7474 5010 11536 2.017 0.573 0.121 0.020 77 6.0 superiorparietal
- 8162 5531 18585 2.940 0.689 0.110 0.020 80 6.6 superiortemporal
- 5209 3570 9028 2.300 0.530 0.120 0.021 58 4.3 supramarginal
- 702 452 1307 2.320 0.369 0.099 0.017 6 0.5 transversetemporal
- 3397 2358 7761 3.240 0.772 0.122 0.027 35 3.9 insula
- PIDs (20515 20518) completed and logs appended.
- #-----------------------------------------
- #@# WM/GM Contrast lh Sun Oct 8 02:06:14 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- pctsurfcon --s 0050731 --lh-only
- #-----------------------------------------
- #@# WM/GM Contrast rh Sun Oct 8 02:06:14 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- pctsurfcon --s 0050731 --rh-only
- Waiting for PID 20591 of (20591 20603) to complete...
- Waiting for PID 20603 of (20591 20603) to complete...
- pctsurfcon --s 0050731 --lh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts/pctsurfcon.log
- Sun Oct 8 02:06:14 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-903 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20591/lh.wm.mgh --regheader 0050731 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 0.99553 0.05585 0.07618 -0.00003;
- -0.07707 0.01394 0.99693 0.00001;
- 0.05461 -0.99834 0.01818 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 81145
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20591/lh.wm.mgh
- Dim: 150920 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20591/lh.gm.mgh --projfrac 0.3 --regheader 0050731 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 0.99553 0.05585 0.07618 -0.00003;
- -0.07707 0.01394 0.99693 0.00001;
- 0.05461 -0.99834 0.01818 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 95616
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20591/lh.gm.mgh
- Dim: 150920 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20591/lh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20591/lh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.w-g.pct.mgh --annot 0050731 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/stats/lh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.w-g.pct.mgh --annot 0050731 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/stats/lh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 1000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.w-g.pct.mgh
- Vertex Area is 0.683783 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- pctsurfcon --s 0050731 --rh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts/pctsurfcon.log
- Sun Oct 8 02:06:14 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-903 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20603/rh.wm.mgh --regheader 0050731 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 0.99553 0.05585 0.07618 -0.00003;
- -0.07707 0.01394 0.99693 0.00001;
- 0.05461 -0.99834 0.01818 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 81299
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20603/rh.wm.mgh
- Dim: 151230 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20603/rh.gm.mgh --projfrac 0.3 --regheader 0050731 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 0.99553 0.05585 0.07618 -0.00003;
- -0.07707 0.01394 0.99693 0.00001;
- 0.05461 -0.99834 0.01818 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 95368
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20603/rh.gm.mgh
- Dim: 151230 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20603/rh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/tmp.pctsurfcon.20603/rh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.w-g.pct.mgh --annot 0050731 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/stats/rh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.w-g.pct.mgh --annot 0050731 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/stats/rh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 2000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.w-g.pct.mgh
- Vertex Area is 0.686279 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- PIDs (20591 20603) completed and logs appended.
- #-----------------------------------------
- #@# Relabel Hypointensities Sun Oct 8 02:06:22 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz
- reading input surface ../surf/lh.white...
- relabeling lh hypointensities...
- 1008 voxels changed to hypointensity...
- reading input surface ../surf/rh.white...
- relabeling rh hypointensities...
- 825 voxels changed to hypointensity...
- 1655 hypointense voxels neighboring cortex changed
- #-----------------------------------------
- #@# AParc-to-ASeg aparc Sun Oct 8 02:06:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_aparc2aseg --s 0050731 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- #-----------------------------------------
- #@# AParc-to-ASeg a2009s Sun Oct 8 02:06:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_aparc2aseg --s 0050731 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- #-----------------------------------------
- #@# AParc-to-ASeg DKTatlas Sun Oct 8 02:06:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_aparc2aseg --s 0050731 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- Waiting for PID 20763 of (20763 20766 20769) to complete...
- Waiting for PID 20766 of (20763 20766 20769) to complete...
- Waiting for PID 20769 of (20763 20766 20769) to complete...
- mri_aparc2aseg --s 0050731 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050731
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aparc+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.10
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 107
- rescaling Left_Cerebral_Cortex from 61 --> 48
- rescaling Left_Lateral_Ventricle from 13 --> 4
- rescaling Left_Inf_Lat_Vent from 34 --> 33
- rescaling Left_Cerebellum_White_Matter from 86 --> 87
- rescaling Left_Cerebellum_Cortex from 60 --> 53
- rescaling Left_Thalamus from 94 --> 91
- rescaling Left_Thalamus_Proper from 84 --> 92
- rescaling Left_Caudate from 75 --> 64
- rescaling Left_Putamen from 80 --> 78
- rescaling Left_Pallidum from 98 --> 97
- rescaling Third_Ventricle from 25 --> 7
- rescaling Fourth_Ventricle from 22 --> 4
- rescaling Brain_Stem from 81 --> 87
- rescaling Left_Hippocampus from 57 --> 58
- rescaling Left_Amygdala from 56 --> 64
- rescaling CSF from 32 --> 9
- rescaling Left_Accumbens_area from 62 --> 57
- rescaling Left_VentralDC from 87 --> 93
- rescaling Right_Cerebral_White_Matter from 105 --> 103
- rescaling Right_Cerebral_Cortex from 58 --> 47
- rescaling Right_Lateral_Ventricle from 13 --> 4
- rescaling Right_Inf_Lat_Vent from 25 --> 23
- rescaling Right_Cerebellum_White_Matter from 87 --> 90
- rescaling Right_Cerebellum_Cortex from 59 --> 51
- rescaling Right_Thalamus_Proper from 85 --> 92
- rescaling Right_Caudate from 62 --> 66
- rescaling Right_Putamen from 80 --> 75
- rescaling Right_Pallidum from 97 --> 91
- rescaling Right_Hippocampus from 53 --> 55
- rescaling Right_Amygdala from 55 --> 62
- rescaling Right_Accumbens_area from 65 --> 65
- rescaling Right_VentralDC from 86 --> 100
- rescaling Fifth_Ventricle from 40 --> 9
- rescaling WM_hypointensities from 78 --> 77
- rescaling non_WM_hypointensities from 40 --> 44
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 539160
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 167 changed.
- pass 2: 16 changed.
- pass 3: 8 changed.
- pass 4: 1 changed.
- pass 5: 1 changed.
- pass 6: 1 changed.
- pass 7: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aparc+aseg.mgz
- mri_aparc2aseg --s 0050731 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050731
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aparc.a2009s+aseg.mgz
- useribbon 0
- baseoffset 10100
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.10
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 107
- rescaling Left_Cerebral_Cortex from 61 --> 48
- rescaling Left_Lateral_Ventricle from 13 --> 4
- rescaling Left_Inf_Lat_Vent from 34 --> 33
- rescaling Left_Cerebellum_White_Matter from 86 --> 87
- rescaling Left_Cerebellum_Cortex from 60 --> 53
- rescaling Left_Thalamus from 94 --> 91
- rescaling Left_Thalamus_Proper from 84 --> 92
- rescaling Left_Caudate from 75 --> 64
- rescaling Left_Putamen from 80 --> 78
- rescaling Left_Pallidum from 98 --> 97
- rescaling Third_Ventricle from 25 --> 7
- rescaling Fourth_Ventricle from 22 --> 4
- rescaling Brain_Stem from 81 --> 87
- rescaling Left_Hippocampus from 57 --> 58
- rescaling Left_Amygdala from 56 --> 64
- rescaling CSF from 32 --> 9
- rescaling Left_Accumbens_area from 62 --> 57
- rescaling Left_VentralDC from 87 --> 93
- rescaling Right_Cerebral_White_Matter from 105 --> 103
- rescaling Right_Cerebral_Cortex from 58 --> 47
- rescaling Right_Lateral_Ventricle from 13 --> 4
- rescaling Right_Inf_Lat_Vent from 25 --> 23
- rescaling Right_Cerebellum_White_Matter from 87 --> 90
- rescaling Right_Cerebellum_Cortex from 59 --> 51
- rescaling Right_Thalamus_Proper from 85 --> 92
- rescaling Right_Caudate from 62 --> 66
- rescaling Right_Putamen from 80 --> 75
- rescaling Right_Pallidum from 97 --> 91
- rescaling Right_Hippocampus from 53 --> 55
- rescaling Right_Amygdala from 55 --> 62
- rescaling Right_Accumbens_area from 65 --> 65
- rescaling Right_VentralDC from 86 --> 100
- rescaling Fifth_Ventricle from 40 --> 9
- rescaling WM_hypointensities from 78 --> 77
- rescaling non_WM_hypointensities from 40 --> 44
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 539164
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 167 changed.
- pass 2: 16 changed.
- pass 3: 8 changed.
- pass 4: 1 changed.
- pass 5: 1 changed.
- pass 6: 1 changed.
- pass 7: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aparc.a2009s+aseg.mgz
- mri_aparc2aseg --s 0050731 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050731
- outvol mri/aparc.DKTatlas+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.10
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 107
- rescaling Left_Cerebral_Cortex from 61 --> 48
- rescaling Left_Lateral_Ventricle from 13 --> 4
- rescaling Left_Inf_Lat_Vent from 34 --> 33
- rescaling Left_Cerebellum_White_Matter from 86 --> 87
- rescaling Left_Cerebellum_Cortex from 60 --> 53
- rescaling Left_Thalamus from 94 --> 91
- rescaling Left_Thalamus_Proper from 84 --> 92
- rescaling Left_Caudate from 75 --> 64
- rescaling Left_Putamen from 80 --> 78
- rescaling Left_Pallidum from 98 --> 97
- rescaling Third_Ventricle from 25 --> 7
- rescaling Fourth_Ventricle from 22 --> 4
- rescaling Brain_Stem from 81 --> 87
- rescaling Left_Hippocampus from 57 --> 58
- rescaling Left_Amygdala from 56 --> 64
- rescaling CSF from 32 --> 9
- rescaling Left_Accumbens_area from 62 --> 57
- rescaling Left_VentralDC from 87 --> 93
- rescaling Right_Cerebral_White_Matter from 105 --> 103
- rescaling Right_Cerebral_Cortex from 58 --> 47
- rescaling Right_Lateral_Ventricle from 13 --> 4
- rescaling Right_Inf_Lat_Vent from 25 --> 23
- rescaling Right_Cerebellum_White_Matter from 87 --> 90
- rescaling Right_Cerebellum_Cortex from 59 --> 51
- rescaling Right_Thalamus_Proper from 85 --> 92
- rescaling Right_Caudate from 62 --> 66
- rescaling Right_Putamen from 80 --> 75
- rescaling Right_Pallidum from 97 --> 91
- rescaling Right_Hippocampus from 53 --> 55
- rescaling Right_Amygdala from 55 --> 62
- rescaling Right_Accumbens_area from 65 --> 65
- rescaling Right_VentralDC from 86 --> 100
- rescaling Fifth_Ventricle from 40 --> 9
- rescaling WM_hypointensities from 78 --> 77
- rescaling non_WM_hypointensities from 40 --> 44
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 539164
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 167 changed.
- pass 2: 16 changed.
- pass 3: 8 changed.
- pass 4: 1 changed.
- pass 5: 1 changed.
- pass 6: 1 changed.
- pass 7: 0 changed.
- nchanged = 0
- Writing output aseg to mri/aparc.DKTatlas+aseg.mgz
- PIDs (20763 20766 20769) completed and logs appended.
- #-----------------------------------------
- #@# APas-to-ASeg Sun Oct 8 02:16:12 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- Sun Oct 8 02:16:12 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- $Id: apas2aseg,v 1.2 2016/02/12 21:43:14 zkaufman Exp $
- Linux tars-903 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- mri_binarize --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri
- cmdline mri_binarize.bin --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- input aparc+aseg.mgz
- frame 0
- nErode3d 0
- nErode2d 0
- output aseg.mgz
- Binarizing based on threshold
- min -infinity
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Replacing 72
- 1: 1000 3
- 2: 2000 42
- 3: 1001 3
- 4: 2001 42
- 5: 1002 3
- 6: 2002 42
- 7: 1003 3
- 8: 2003 42
- 9: 1004 3
- 10: 2004 42
- 11: 1005 3
- 12: 2005 42
- 13: 1006 3
- 14: 2006 42
- 15: 1007 3
- 16: 2007 42
- 17: 1008 3
- 18: 2008 42
- 19: 1009 3
- 20: 2009 42
- 21: 1010 3
- 22: 2010 42
- 23: 1011 3
- 24: 2011 42
- 25: 1012 3
- 26: 2012 42
- 27: 1013 3
- 28: 2013 42
- 29: 1014 3
- 30: 2014 42
- 31: 1015 3
- 32: 2015 42
- 33: 1016 3
- 34: 2016 42
- 35: 1017 3
- 36: 2017 42
- 37: 1018 3
- 38: 2018 42
- 39: 1019 3
- 40: 2019 42
- 41: 1020 3
- 42: 2020 42
- 43: 1021 3
- 44: 2021 42
- 45: 1022 3
- 46: 2022 42
- 47: 1023 3
- 48: 2023 42
- 49: 1024 3
- 50: 2024 42
- 51: 1025 3
- 52: 2025 42
- 53: 1026 3
- 54: 2026 42
- 55: 1027 3
- 56: 2027 42
- 57: 1028 3
- 58: 2028 42
- 59: 1029 3
- 60: 2029 42
- 61: 1030 3
- 62: 2030 42
- 63: 1031 3
- 64: 2031 42
- 65: 1032 3
- 66: 2032 42
- 67: 1033 3
- 68: 2033 42
- 69: 1034 3
- 70: 2034 42
- 71: 1035 3
- 72: 2035 42
- Found 0 values in range
- Counting number of voxels in first frame
- Found 0 voxels in final mask
- Count: 0 0.000000 16777216 0.000000
- mri_binarize done
-
- Started at Sun Oct 8 02:16:12 CEST 2017
- Ended at Sun Oct 8 02:16:20 CEST 2017
- Apas2aseg-Run-Time-Sec 8
-
- apas2aseg Done
- #--------------------------------------------
- #@# ASeg Stats Sun Oct 8 02:16:20 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050731
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050731
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- Computing euler number
- orig.nofix lheno = -28, rheno = -8
- orig.nofix lhholes = 15, rhholes = 5
- Loading mri/aseg.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 50 segmentations
- Computing statistics for each segmentation
- Reporting on 45 segmentations
- Using PrintSegStat
- mri_segstats done
- #-----------------------------------------
- #@# WMParc Sun Oct 8 02:18:46 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731
- mri_aparc2aseg --s 0050731 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050731
- outvol mri/wmparc.mgz
- useribbon 0
- baseoffset 0
- labeling wm
- labeling hypo-intensities as wm
- dmaxctx 5.000000
- RipUnknown 1
- CtxSeg /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aparc+aseg.mgz
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/ribbon.mgz
- Loading filled from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/ribbon.mgz
- Ripping vertices labeled as unkown
- Ripped 8910 vertices from left hemi
- Ripped 8274 vertices from right hemi
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aseg.mgz
- Loading Ctx Seg File /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/aparc+aseg.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1074945
- Used brute-force search on 556 voxels
- Fixing Parahip LH WM
- Found 19 clusters
- 0 k 1.000000
- 1 k 1.000000
- 2 k 1.000000
- 3 k 1.000000
- 4 k 1.000000
- 5 k 1.000000
- 6 k 2.000000
- 7 k 3.000000
- 8 k 2.000000
- 9 k 1.000000
- 10 k 1.000000
- 11 k 2.000000
- 12 k 1.000000
- 13 k 2.000000
- 14 k 1.000000
- 15 k 1.000000
- 16 k 1320.000000
- 17 k 20.000000
- 18 k 1.000000
- Fixing Parahip RH WM
- Found 17 clusters
- 0 k 1.000000
- 1 k 1.000000
- 2 k 1.000000
- 3 k 1.000000
- 4 k 1.000000
- 5 k 1.000000
- 6 k 1.000000
- 7 k 1.000000
- 8 k 1.000000
- 9 k 1.000000
- 10 k 1.000000
- 11 k 1.000000
- 12 k 2.000000
- 13 k 2015.000000
- 14 k 1.000000
- 15 k 1.000000
- 16 k 2.000000
- Writing output aseg to mri/wmparc.mgz
- mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050731 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050731 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- Loading mri/wmparc.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 390 segmentations
- Computing statistics for each segmentation
- Reporting on 70 segmentations
- Using PrintSegStat
- mri_segstats done
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label
- #--------------------------------------------
- #@# BA_exvivo Labels lh Sun Oct 8 02:32:02 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 22070 of (22070 22076 22082 22087 22093) to complete...
- Waiting for PID 22076 of (22070 22076 22082 22087 22093) to complete...
- Waiting for PID 22082 of (22070 22076 22082 22087 22093) to complete...
- Waiting for PID 22087 of (22070 22076 22082 22087 22093) to complete...
- Waiting for PID 22093 of (22070 22076 22082 22087 22093) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4129 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4129 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 396
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.label 4525
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7909 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7909 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 875
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.label 8784
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA3a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4077 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4077 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 65
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.label 4142
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA3b_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5983 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5983 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 233
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.label 6216
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA4a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5784 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5784 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 345
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.label 6129
- mri_label2label: Done
- PIDs (22070 22076 22082 22087 22093) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 22146 of (22146 22152 22158 22164) to complete...
- Waiting for PID 22152 of (22146 22152 22158 22164) to complete...
- Waiting for PID 22158 of (22146 22152 22158 22164) to complete...
- Waiting for PID 22164 of (22146 22152 22158 22164) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA4p_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4070 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4070 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 116
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.label 4186
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA6_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 13589 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 13589 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 1397
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.label 14986
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA44_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4181 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4181 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 320
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.label 4501
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0050731 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA45_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3422 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3422 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 1362
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.label 4784
- mri_label2label: Done
- PIDs (22146 22152 22158 22164) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0050731 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0050731 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0050731 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0050731 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0050731 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 22268 of (22268 22274 22280 22286 22292) to complete...
- Waiting for PID 22274 of (22268 22274 22280 22286 22292) to complete...
- Waiting for PID 22280 of (22268 22274 22280 22286 22292) to complete...
- Waiting for PID 22286 of (22268 22274 22280 22286 22292) to complete...
- Waiting for PID 22292 of (22268 22274 22280 22286 22292) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0050731 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.V1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4641 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4641 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 1140
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.label 5781
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0050731 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.V2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8114 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8114 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 2805
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.label 10919
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0050731 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.MT_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2018 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2018 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 555
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.label 2573
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0050731 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1290 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1290 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 133
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.label 1423
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0050731 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1199 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1199 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 94
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.label 1293
- mri_label2label: Done
- PIDs (22268 22274 22280 22286 22292) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 22405 of (22405 22411 22417 22420 22427) to complete...
- Waiting for PID 22411 of (22405 22411 22417 22420 22427) to complete...
- Waiting for PID 22417 of (22405 22411 22417 22420 22427) to complete...
- Waiting for PID 22420 of (22405 22411 22417 22420 22427) to complete...
- Waiting for PID 22427 of (22405 22411 22417 22420 22427) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1014 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1014 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 149
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.thresh.label 1163
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2092 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2092 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 362
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.thresh.label 2454
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1504 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1504 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 21
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.thresh.label 1525
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1996 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1996 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 46
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.thresh.label 2042
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2319 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2319 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 208
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.thresh.label 2527
- mri_label2label: Done
- PIDs (22405 22411 22417 22420 22427) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 22484 of (22484 22490 22496 22502) to complete...
- Waiting for PID 22490 of (22484 22490 22496 22502) to complete...
- Waiting for PID 22496 of (22484 22490 22496 22502) to complete...
- Waiting for PID 22502 of (22484 22490 22496 22502) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1549 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1549 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 52
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.thresh.label 1601
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7035 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7035 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 725
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.thresh.label 7760
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1912 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 117
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.thresh.label 2029
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1151 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1151 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 474
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.thresh.label 1625
- mri_label2label: Done
- PIDs (22484 22490 22496 22502) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 22545 of (22545 22551 22557 22563 22567) to complete...
- Waiting for PID 22551 of (22545 22551 22557 22563 22567) to complete...
- Waiting for PID 22557 of (22545 22551 22557 22563 22567) to complete...
- Waiting for PID 22563 of (22545 22551 22557 22563 22567) to complete...
- Waiting for PID 22567 of (22545 22551 22557 22563 22567) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3405 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3405 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 757
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.thresh.label 4162
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3334 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3334 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 1248
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.thresh.label 4582
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 513 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 513 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 148
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.thresh.label 661
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 470 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 470 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 65
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.thresh.label 535
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./lh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 450 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 450 nlabel points
- Performing mapping from target back to the source label 150920
- Number of reverse mapping hits = 34
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.thresh.label 484
- mri_label2label: Done
- PIDs (22545 22551 22557 22563 22567) completed and logs appended.
- mris_label2annot --s 0050731 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label
- cmdline mris_label2annot --s 0050731 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- subject 0050731
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 106627 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.BA_exvivo.annot
- mris_label2annot --s 0050731 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label
- cmdline mris_label2annot --s 0050731 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- subject 0050731
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 125282 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/lh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab 0050731 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1290 793 1961 1.926 0.599 0.132 0.028 17 1.4 BA1_exvivo
- 4950 3274 6858 2.027 0.464 0.111 0.019 40 3.9 BA2_exvivo
- 931 609 874 1.745 0.444 0.129 0.027 8 0.9 BA3a_exvivo
- 2174 1465 2958 1.749 0.620 0.106 0.019 19 1.6 BA3b_exvivo
- 1826 1124 3267 2.484 0.530 0.112 0.027 17 2.0 BA4a_exvivo
- 1145 743 1703 2.340 0.494 0.084 0.013 6 0.6 BA4p_exvivo
- 10164 6966 21484 2.548 0.599 0.111 0.017 90 6.9 BA6_exvivo
- 2280 1608 4635 2.568 0.561 0.122 0.018 24 1.6 BA44_exvivo
- 4046 2799 8790 2.539 0.671 0.126 0.022 52 3.7 BA45_exvivo
- 3305 2329 3766 1.680 0.424 0.152 0.031 53 4.2 V1_exvivo
- 8579 5923 12573 2.007 0.618 0.155 0.031 132 11.0 V2_exvivo
- 2204 1474 3999 2.340 0.563 0.128 0.023 25 2.2 MT_exvivo
- 708 473 2178 3.426 0.797 0.094 0.018 5 0.5 perirhinal_exvivo
- 691 487 1719 3.148 0.756 0.098 0.015 5 0.3 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0050731 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 274466
- Total vertex volume 270358 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 903 521 1385 1.980 0.531 0.139 0.034 15 1.2 BA1_exvivo
- 2063 1321 2868 1.982 0.415 0.112 0.019 19 1.6 BA2_exvivo
- 788 505 661 1.695 0.409 0.131 0.029 7 0.8 BA3a_exvivo
- 1286 899 1298 1.385 0.296 0.083 0.011 6 0.6 BA3b_exvivo
- 1680 1055 2962 2.438 0.569 0.104 0.024 13 1.8 BA4a_exvivo
- 990 633 1396 2.328 0.476 0.087 0.014 5 0.5 BA4p_exvivo
- 5840 3946 12188 2.541 0.593 0.108 0.016 48 3.7 BA6_exvivo
- 1420 1026 2934 2.478 0.586 0.125 0.018 15 1.0 BA44_exvivo
- 1539 1100 3679 2.599 0.624 0.139 0.026 24 1.6 BA45_exvivo
- 3549 2487 4068 1.672 0.424 0.148 0.029 54 4.4 V1_exvivo
- 4218 2929 6145 1.949 0.661 0.164 0.035 70 6.1 V2_exvivo
- 606 400 1234 2.544 0.627 0.131 0.027 6 0.7 MT_exvivo
- 373 239 1317 3.613 0.706 0.096 0.017 3 0.3 perirhinal_exvivo
- 383 268 909 3.217 0.535 0.085 0.014 3 0.2 entorhinal_exvivo
- #--------------------------------------------
- #@# BA_exvivo Labels rh Sun Oct 8 02:36:15 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 22710 of (22710 22716 22722 22727 22734) to complete...
- Waiting for PID 22716 of (22710 22716 22722 22727 22734) to complete...
- Waiting for PID 22722 of (22710 22716 22722 22727 22734) to complete...
- Waiting for PID 22727 of (22710 22716 22722 22727 22734) to complete...
- Waiting for PID 22734 of (22710 22716 22722 22727 22734) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3962 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3962 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 257
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.label 4219
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6687 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6687 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 312
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.label 6999
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA3a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3980 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3980 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 118
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.label 4098
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA3b_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4522 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4522 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 174
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.label 4696
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA4a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5747 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5747 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 532
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.label 6279
- mri_label2label: Done
- PIDs (22710 22716 22722 22727 22734) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 22775 of (22775 22781 22787 22792) to complete...
- Waiting for PID 22781 of (22775 22781 22787 22792) to complete...
- Waiting for PID 22787 of (22775 22781 22787 22792) to complete...
- Waiting for PID 22792 of (22775 22781 22787 22792) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA4p_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4473 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4473 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 300
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.label 4773
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA6_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 12256 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 12256 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 1513
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.label 13769
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA44_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6912 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 949
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.label 7861
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0050731 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA45_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5355 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5355 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 1293
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.label 6648
- mri_label2label: Done
- PIDs (22775 22781 22787 22792) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0050731 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0050731 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0050731 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0050731 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0050731 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 22852 of (22852 22858 22864 22870 22876) to complete...
- Waiting for PID 22858 of (22852 22858 22864 22870 22876) to complete...
- Waiting for PID 22864 of (22852 22858 22864 22870 22876) to complete...
- Waiting for PID 22870 of (22852 22858 22864 22870 22876) to complete...
- Waiting for PID 22876 of (22852 22858 22864 22870 22876) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0050731 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.V1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4727 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4727 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 1435
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.label 6162
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0050731 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.V2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8016 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8016 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 3623
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.label 11639
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0050731 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.MT_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1932 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1932 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 1098
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.label 3030
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0050731 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1038 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1038 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 169
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.label 1207
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0050731 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 752 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 752 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 113
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.label 865
- mri_label2label: Done
- PIDs (22852 22858 22864 22870 22876) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 22922 of (22922 22928 22934 22938 22946) to complete...
- Waiting for PID 22928 of (22922 22928 22934 22938 22946) to complete...
- Waiting for PID 22934 of (22922 22928 22934 22938 22946) to complete...
- Waiting for PID 22938 of (22922 22928 22934 22938 22946) to complete...
- Waiting for PID 22946 of (22922 22928 22934 22938 22946) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 876 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 876 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 87
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.thresh.label 963
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2688 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2688 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 118
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.thresh.label 2806
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1698 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1698 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 50
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.thresh.label 1748
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2183 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2183 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 73
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.thresh.label 2256
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1388 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1388 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 177
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.thresh.label 1565
- mri_label2label: Done
- PIDs (22922 22928 22934 22938 22946) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 23006 of (23006 23012 23018 23023) to complete...
- Waiting for PID 23012 of (23006 23012 23018 23023) to complete...
- Waiting for PID 23018 of (23006 23012 23018 23023) to complete...
- Waiting for PID 23023 of (23006 23012 23018 23023) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1489 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1489 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 111
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.thresh.label 1600
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6959 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6959 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 824
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.thresh.label 7783
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1012 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1012 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 172
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.thresh.label 1184
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1178 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1178 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 260
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.thresh.label 1438
- mri_label2label: Done
- PIDs (23006 23012 23018 23023) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 23067 of (23067 23073 23079 23085 23089) to complete...
- Waiting for PID 23073 of (23067 23073 23079 23085 23089) to complete...
- Waiting for PID 23079 of (23067 23073 23079 23085 23089) to complete...
- Waiting for PID 23085 of (23067 23073 23079 23085 23089) to complete...
- Waiting for PID 23089 of (23067 23073 23079 23085 23089) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3232 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3232 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 872
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.thresh.label 4104
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3437 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3437 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 1442
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.thresh.label 4879
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 268 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 268 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 123
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.thresh.label 391
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 694 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 694 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 130
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.thresh.label 824
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0050731 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050731
- trglabel = ./rh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 291 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 291 nlabel points
- Performing mapping from target back to the source label 151230
- Number of reverse mapping hits = 44
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.thresh.label 335
- mri_label2label: Done
- PIDs (23067 23073 23079 23085 23089) completed and logs appended.
- mris_label2annot --s 0050731 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label
- cmdline mris_label2annot --s 0050731 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- subject 0050731
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 105593 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.BA_exvivo.annot
- mris_label2annot --s 0050731 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label
- cmdline mris_label2annot --s 0050731 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-903
- machine x86_64
- user ntraut
- subject 0050731
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 126366 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/label/rh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab 0050731 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 1025 636 1773 2.075 0.530 0.147 0.030 14 1.4 BA1_exvivo
- 3178 2166 4003 1.839 0.482 0.106 0.017 24 2.1 BA2_exvivo
- 1111 710 977 1.724 0.396 0.128 0.024 10 1.0 BA3a_exvivo
- 1877 1282 2277 1.563 0.573 0.096 0.016 16 1.2 BA3b_exvivo
- 1934 1204 3553 2.476 0.570 0.097 0.023 14 2.3 BA4a_exvivo
- 1396 902 2299 2.484 0.517 0.078 0.014 5 0.8 BA4p_exvivo
- 9495 6448 21180 2.773 0.571 0.116 0.019 85 7.3 BA6_exvivo
- 3800 2572 7526 2.684 0.462 0.110 0.019 35 3.0 BA44_exvivo
- 4873 3399 9868 2.563 0.571 0.136 0.023 62 4.6 BA45_exvivo
- 3753 2734 5314 1.795 0.534 0.152 0.031 56 4.9 V1_exvivo
- 9313 6463 14747 2.096 0.592 0.156 0.031 149 12.1 V2_exvivo
- 2876 2003 4960 2.352 0.474 0.137 0.026 39 3.3 MT_exvivo
- 674 458 1930 3.392 1.134 0.139 0.053 15 1.4 perirhinal_exvivo
- 332 250 885 2.761 0.700 0.115 0.049 4 0.8 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0050731 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050731/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 275122
- Total vertex volume 271383 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1795480 mm^3 (det: 1.085005 )
- lhCtxGM: 270113.048 269811.000 diff= 302.0 pctdiff= 0.112
- rhCtxGM: 271394.879 271212.000 diff= 182.9 pctdiff= 0.067
- lhCtxWM: 267176.380 267112.500 diff= 63.9 pctdiff= 0.024
- rhCtxWM: 269870.552 270335.500 diff= -464.9 pctdiff=-0.172
- SubCortGMVol 63508.000
- SupraTentVol 1178534.859 (1176458.000) diff=2076.859 pctdiff=0.176
- SupraTentVolNotVent 1144075.859 (1141999.000) diff=2076.859 pctdiff=0.182
- BrainSegVol 1320894.000 (1317806.000) diff=3088.000 pctdiff=0.234
- BrainSegVolNotVent 1282453.000 (1282402.859) diff=50.141 pctdiff=0.004
- BrainSegVolNotVent 1282453.000
- CerebellumVol 140320.000
- VentChorVol 34459.000
- 3rd4th5thCSF 3982.000
- CSFVol 894.000, OptChiasmVol 134.000
- MaskVol 1729586.000
- 664 432 1032 1.848 0.457 0.149 0.030 10 1.0 BA1_exvivo
- 1860 1236 2280 1.768 0.431 0.095 0.013 11 1.1 BA2_exvivo
- 999 640 819 1.723 0.405 0.129 0.025 9 0.9 BA3a_exvivo
- 1501 1041 1454 1.376 0.324 0.084 0.011 9 0.7 BA3b_exvivo
- 1192 719 2051 2.466 0.637 0.108 0.032 11 2.0 BA4a_exvivo
- 1138 737 1840 2.483 0.514 0.075 0.013 4 0.7 BA4p_exvivo
- 6085 4124 13435 2.738 0.594 0.119 0.020 58 5.0 BA6_exvivo
- 1020 716 2417 2.726 0.520 0.111 0.018 12 0.8 BA44_exvivo
- 1278 894 3081 2.784 0.504 0.147 0.028 19 1.4 BA45_exvivo
- 3573 2583 4813 1.777 0.521 0.150 0.030 51 4.6 V1_exvivo
- 4530 3206 7218 2.020 0.636 0.165 0.034 84 6.3 V2_exvivo
- 377 279 693 2.138 0.397 0.152 0.028 6 0.4 MT_exvivo
- 405 277 1283 3.667 0.896 0.111 0.044 6 0.7 perirhinal_exvivo
- 242 171 725 3.018 1.043 0.153 0.066 7 0.6 entorhinal_exvivo
- Started at Sat Oct 7 16:42:24 CEST 2017
- Ended at Sun Oct 8 02:40:27 CEST 2017
- #@#%# recon-all-run-time-hours 9.967
- recon-all -s 0050731 finished without error at Sun Oct 8 02:40:27 CEST 2017
|
