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0050661
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050661 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-118
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050661
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1097478.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1079673.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1079359.955910, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 13675.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 236288.182920, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 235796.112083, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 472084.295003, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 207214.700894, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 205371.960013, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 412586.660907, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 55416.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 640178.295003, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 956714.955910, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 943039.955910, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 940333.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1548670.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.752905, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.062437, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 51, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 46, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 97, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1457657.649932, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/07 23:05:00 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 16:42:54 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 16:42:54 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      6895     7234.2  Left-Lateral-Ventricle            39.3652    11.6373    22.0000    89.0000    67.0000 
    82. 

  82.   2   5       582      612.4  Left-Inf-Lat-Vent                 45.3265    12.1159    17.0000    80.0000    63.0000 
    83. 

  83.   3   7     13043    13782.7  Left-Cerebellum-White-Matter      88.6586     6.0096    33.0000   100.0000    67.0000 
    84. 

  84.   4   8     55783    55421.6  Left-Cerebellum-Cortex            69.0848    10.1222    26.0000    97.0000    71.0000 
    85. 

  85.   5  10      7908     7690.2  Left-Thalamus-Proper              91.8594     8.0821    44.0000   107.0000    63.0000 
    86. 

  86.   6  11      3280     3297.5  Left-Caudate                      83.7515     6.7908    56.0000   107.0000    51.0000 
    87. 

  87.   7  12      4704     4798.5  Left-Putamen                      88.8754     4.3397    67.0000   102.0000    35.0000 
    88. 

  88.   8  13      1867     1847.2  Left-Pallidum                     98.5410     3.3244    78.0000   108.0000    30.0000 
    89. 

  89.   9  14       948      988.5  3rd-Ventricle                     46.3133    12.8570    27.0000    85.0000    58.0000 
    90. 

  90.  10  15      2193     2352.3  4th-Ventricle                     37.3228     9.6800    20.0000    74.0000    54.0000 
    91. 

  91.  11  16     18205    17704.6  Brain-Stem                        86.5032     9.6295    32.0000   111.0000    79.0000 
    92. 

  92.  12  17      4227     4008.2  Left-Hippocampus                  75.1488     7.4751    40.0000   100.0000    60.0000 
    93. 

  93.  13  18      1540     1464.1  Left-Amygdala                     73.8617     7.6257    33.0000    93.0000    60.0000 
    94. 

  94.  14  24       989      944.8  CSF                               57.9494    13.0120    27.0000   103.0000    76.0000 
    95. 

  95.  15  26       389      394.6  Left-Accumbens-area               81.3805     4.9094    51.0000    93.0000    42.0000 
    96. 

  96.  16  28      3950     3768.9  Left-VentralDC                    91.7970     9.8040    42.0000   111.0000    69.0000 
    97. 

  97.  17  30         0        0.0  Left-vessel                        0.0000     0.0000     0.0000     0.0000     0.0000 
    98. 

  98.  18  31       367      339.8  Left-choroid-plexus               54.0790    11.5596    30.0000    82.0000    52.0000 
    99. 

  99.  19  43      5134     5372.3  Right-Lateral-Ventricle           44.1720    12.7901    23.0000    90.0000    67.0000 
    100. 

  100.  20  44       377      435.3  Right-Inf-Lat-Vent                47.1008    11.5183    23.0000    80.0000    57.0000 
    101. 

  101.  21  46     13542    14134.4  Right-Cerebellum-White-Matter     87.3466     5.5872    41.0000   102.0000    61.0000 
    102. 

  102.  22  47     55530    55167.7  Right-Cerebellum-Cortex           69.1178     9.6005    24.0000    96.0000    72.0000 
    103. 

  103.  23  49      7303     6990.7  Right-Thalamus-Proper             90.4478     8.1533    41.0000   105.0000    64.0000 
    104. 

  104.  24  50      3202     3166.7  Right-Caudate                     85.6914     6.3945    56.0000   103.0000    47.0000 
    105. 

  105.  25  51      4715     4777.1  Right-Putamen                     88.9941     4.2985    69.0000   103.0000    34.0000 
    106. 

  106.  26  52      1737     1714.9  Right-Pallidum                    99.0512     3.1763    82.0000   108.0000    26.0000 
    107. 

  107.  27  53      4367     4202.3  Right-Hippocampus                 74.4170     7.2954    33.0000    99.0000    66.0000 
    108. 

  108.  28  54      1790     1699.0  Right-Amygdala                    73.3693     8.1044    23.0000    96.0000    73.0000 
    109. 

  109.  29  58       572      596.6  Right-Accumbens-area              82.3671     3.4400    67.0000    96.0000    29.0000 
    110. 

  110.  30  60      3903     3659.8  Right-VentralDC                   90.4140    10.8790    35.0000   109.0000    74.0000 
    111. 

  111.  31  62        10       23.7  Right-vessel                      64.4000     4.6951    57.0000    71.0000    14.0000 
    112. 

  112.  32  63       320      278.6  Right-choroid-plexus              59.0187    10.7863    31.0000    81.0000    50.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       611      522.0  WM-hypointensities                71.9640     9.5484    43.0000   103.0000    60.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85        92       76.5  Optic-Chiasm                      64.5000    16.5606    31.0000    97.0000    66.0000 
    121. 

  121.  41 251      1024      938.1  CC_Posterior                      99.1279    15.3437    41.0000   114.0000    73.0000 
    122. 

  122.  42 252       643      564.8  CC_Mid_Posterior                  94.6998    13.2853    44.0000   113.0000    69.0000 
    123. 

  123.  43 253       726      650.7  CC_Central                        91.5771    14.7889    34.0000   110.0000    76.0000 
    124. 

  124.  44 254       662      563.9  CC_Mid_Anterior                   91.7553    16.1287    40.0000   112.0000    72.0000 
    125. 

  125.  45 255       918      822.2  CC_Anterior                      101.2832    13.3542    46.0000   120.0000    74.0000 
    126.