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0050660
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050660 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-542
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050660
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 16563.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 233480.686148, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 237715.067813, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 471195.753960, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1664570.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1471526.484306, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 00:33:39 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 16:38:19 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 16:38:19 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      1696     1721.1  wm-lh-bankssts                   102.0424     6.6607    81.0000   116.0000    35.0000 
    66. 

  66.   2 3002      2536     2616.1  wm-lh-caudalanteriorcingulate    105.4618     5.5333    83.0000   119.0000    36.0000 
    67. 

  67.   3 3003      6444     6492.2  wm-lh-caudalmiddlefrontal        101.5268     6.0918    52.0000   118.0000    66.0000 
    68. 

  68.   4 3005      2830     2844.3  wm-lh-cuneus                      95.4088     7.6832    74.0000   115.0000    41.0000 
    69. 

  69.   5 3006       833      902.7  wm-lh-entorhinal                  83.5138     5.3392    62.0000   101.0000    39.0000 
    70. 

  70.   6 3007      8198     8212.4  wm-lh-fusiform                    93.4428     7.4365    56.0000   116.0000    60.0000 
    71. 

  71.   7 3008     10450    10672.3  wm-lh-inferiorparietal           103.8112     6.4537    77.0000   120.0000    43.0000 
    72. 

  72.   8 3009      6897     7227.0  wm-lh-inferiortemporal            95.6275     8.5462    67.0000   123.0000    56.0000 
    73. 

  73.   9 3010      4961     5028.8  wm-lh-isthmuscingulate           104.7315     6.3863    39.0000   120.0000    81.0000 
    74. 

  74.  10 3011     11156    11517.6  wm-lh-lateraloccipital            94.1270     8.0999    56.0000   117.0000    61.0000 
    75. 

  75.  11 3012      6804     6807.5  wm-lh-lateralorbitofrontal       100.5140     7.2998    74.0000   123.0000    49.0000 
    76. 

  76.  12 3013      6204     6270.6  wm-lh-lingual                     91.9919     7.5994    40.0000   116.0000    76.0000 
    77. 

  77.  13 3014      4393     4436.4  wm-lh-medialorbitofrontal         99.5875     9.7152    36.0000   126.0000    90.0000 
    78. 

  78.  14 3015      6548     6836.9  wm-lh-middletemporal              99.9580     7.2645    74.0000   119.0000    45.0000 
    79. 

  79.  15 3016      1720     1850.9  wm-lh-parahippocampal             90.9140     6.3364    69.0000   109.0000    40.0000 
    80. 

  80.  16 3017      3437     3515.5  wm-lh-paracentral                 97.2383     5.8028    76.0000   116.0000    40.0000 
    81. 

  81.  17 3018      2907     2941.7  wm-lh-parsopercularis            100.3660     6.7731    49.0000   118.0000    69.0000 
    82. 

  82.  18 3019       944      982.8  wm-lh-parsorbitalis               94.5466     6.0044    76.0000   108.0000    32.0000 
    83. 

  83.  19 3020      2835     2845.7  wm-lh-parstriangularis           100.3055     6.3854    65.0000   117.0000    52.0000 
    84. 

  84.  20 3021      3486     3364.2  wm-lh-pericalcarine               90.8804     7.3788    59.0000   111.0000    52.0000 
    85. 

  85.  21 3022      7563     7891.4  wm-lh-postcentral                 98.1583     6.7615    76.0000   119.0000    43.0000 
    86. 

  86.  22 3023      4497     4470.5  wm-lh-posteriorcingulate         103.3233     6.5692    51.0000   118.0000    67.0000 
    87. 

  87.  23 3024     13581    13789.2  wm-lh-precentral                  98.0902     6.4615    40.0000   116.0000    76.0000 
    88. 

  88.  24 3025      8806     8862.1  wm-lh-precuneus                  103.4353     6.4286    48.0000   119.0000    71.0000 
    89. 

  89.  25 3026      2583     2541.0  wm-lh-rostralanteriorcingulate   103.2412     8.2665    37.0000   123.0000    86.0000 
    90. 

  90.  26 3027     12153    12300.7  wm-lh-rostralmiddlefrontal       100.4837     6.6640    58.0000   117.0000    59.0000 
    91. 

  91.  27 3028     15290    15544.8  wm-lh-superiorfrontal             99.6758     6.4008    36.0000   117.0000    81.0000 
    92. 

  92.  28 3029     11173    11585.4  wm-lh-superiorparietal           102.2919     6.8365    68.0000   124.0000    56.0000 
    93. 

  93.  29 3030      7482     7799.6  wm-lh-superiortemporal           100.0055     7.1050    67.0000   119.0000    52.0000 
    94. 

  94.  30 3031      8634     8706.3  wm-lh-supramarginal              102.1207     6.9559    67.0000   121.0000    54.0000 
    95. 

  95.  31 3032       301      298.1  wm-lh-frontalpole                 95.4718     6.2281    81.0000   110.0000    29.0000 
    96. 

  96.  32 3033       728      813.8  wm-lh-temporalpole                87.9025     5.7504    68.0000   106.0000    38.0000 
    97. 

  97.  33 3034       814      803.2  wm-lh-transversetemporal          99.3354     5.6687    83.0000   114.0000    31.0000 
    98. 

  98.  34 3035     10126    10047.4  wm-lh-insula                      97.6309     7.8201    56.0000   117.0000    61.0000 
    99. 

  99.  35 4001      3384     3355.8  wm-rh-bankssts                   101.1424     4.9871    85.0000   116.0000    31.0000 
    100. 

  100.  36 4002      2774     2819.6  wm-rh-caudalanteriorcingulate    106.2632     5.2452    86.0000   121.0000    35.0000 
    101. 

  101.  37 4003      5694     5732.0  wm-rh-caudalmiddlefrontal        101.6802     5.9248    77.0000   116.0000    39.0000 
    102. 

  102.  38 4005      2321     2412.7  wm-rh-cuneus                      95.7717     6.1154    77.0000   112.0000    35.0000 
    103. 

  103.  39 4006       824      866.3  wm-rh-entorhinal                  86.0704     5.6167    68.0000   106.0000    38.0000 
    104. 

  104.  40 4007      8174     8182.1  wm-rh-fusiform                    93.4421     7.4158    38.0000   121.0000    83.0000 
    105. 

  105.  41 4008     12752    13018.3  wm-rh-inferiorparietal           101.7207     6.1622    64.0000   118.0000    54.0000 
    106. 

  106.  42 4009      5900     6146.0  wm-rh-inferiortemporal            94.0593     7.3740    72.0000   126.0000    54.0000 
    107. 

  107.  43 4010      3498     3499.0  wm-rh-isthmuscingulate           102.6795     6.4616    40.0000   120.0000    80.0000 
    108. 

  108.  44 4011      9807    10121.9  wm-rh-lateraloccipital            92.7277     6.9428    71.0000   110.0000    39.0000 
    109. 

  109.  45 4012      6614     6564.5  wm-rh-lateralorbitofrontal        99.5287     7.8521    69.0000   119.0000    50.0000 
    110. 

  110.  46 4013      4624     4705.7  wm-rh-lingual                     89.6916     9.1321    16.0000   113.0000    97.0000 
    111. 

  111.  47 4014      4293     4336.5  wm-rh-medialorbitofrontal        101.9010     9.0485    37.0000   120.0000    83.0000 
    112. 

  112.  48 4015      6872     7115.2  wm-rh-middletemporal              98.3382     6.3471    78.0000   116.0000    38.0000 
    113. 

  113.  49 4016      1627     1774.8  wm-rh-parahippocampal             88.9385     5.6658    71.0000   106.0000    35.0000 
    114. 

  114.  50 4017      5594     5669.4  wm-rh-paracentral                 97.6039     6.2720    74.0000   115.0000    41.0000 
    115. 

  115.  51 4018      2716     2752.6  wm-rh-parsopercularis             98.3166     6.5140    76.0000   116.0000    40.0000 
    116. 

  116.  52 4019      1141     1165.7  wm-rh-parsorbitalis               97.7038     6.9703    77.0000   115.0000    38.0000 
    117. 

  117.  53 4020      3206     3226.9  wm-rh-parstriangularis            98.9704     6.5963    76.0000   115.0000    39.0000 
    118. 

  118.  54 4021      3235     3137.3  wm-rh-pericalcarine               90.5570     8.7634    18.0000   111.0000    93.0000 
    119. 

  119.  55 4022      8193     8572.2  wm-rh-postcentral                 97.1477     6.4195    66.0000   117.0000    51.0000 
    120. 

  120.  56 4023      4786     4819.7  wm-rh-posteriorcingulate         103.0324     5.7271    61.0000   118.0000    57.0000 
    121. 

  121.  57 4024     15607    15753.2  wm-rh-precentral                  97.8836     6.0305    74.0000   117.0000    43.0000 
    122. 

  122.  58 4025      7884     8056.1  wm-rh-precuneus                  101.5038     5.7166    58.0000   116.0000    58.0000 
    123. 

  123.  59 4026      1980     1976.1  wm-rh-rostralanteriorcingulate   106.7692     6.8752    78.0000   123.0000    45.0000 
    124. 

  124.  60 4027     11767    11964.1  wm-rh-rostralmiddlefrontal       102.5153     6.5640    79.0000   120.0000    41.0000 
    125. 

  125.  61 4028     15305    15589.9  wm-rh-superiorfrontal            101.1989     6.4601    50.0000   121.0000    71.0000 
    126. 

  126.  62 4029     10787    11100.5  wm-rh-superiorparietal           100.1333     6.4149    71.0000   116.0000    45.0000 
    127. 

  127.  63 4030      6876     7301.4  wm-rh-superiortemporal           100.1328     6.3731    77.0000   115.0000    38.0000 
    128. 

  128.  64 4031     10720    10857.9  wm-rh-supramarginal              102.1721     5.8128    62.0000   119.0000    57.0000 
    129. 

  129.  65 4032       383      386.6  wm-rh-frontalpole                101.3264     6.6616    83.0000   115.0000    32.0000 
    130. 

  130.  66 4033       570      628.7  wm-rh-temporalpole                91.4719     6.5960    73.0000   112.0000    39.0000 
    131. 

  131.  67 4034       727      715.5  wm-rh-transversetemporal         101.3989     5.1858    88.0000   115.0000    27.0000 
    132. 

  132.  68 4035     10761    10666.6  wm-rh-insula                      97.0173     8.0221    44.0000   117.0000    73.0000 
    133. 

  133.  69 5001     32864    32323.3  Left-UnsegmentedWhiteMatter      101.0583     9.1764    29.0000   120.0000    91.0000 
    134. 

  134.  70 5002     34273    33967.2  Right-UnsegmentedWhiteMatter     101.1661     8.0613    24.0000   121.0000    97.0000 
    135.