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ABIDE_fs-6.0.0
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0050660
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050660 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-542
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050660
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1281366.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1261243.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1260795.699680, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 16563.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 279280.808462, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 284870.137258, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 564150.945720, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 233480.686148, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 237715.067813, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 471195.753960, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 68130.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 756023.945720, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1124469.699680, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1107906.699680, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1103800.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1664570.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.870773, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.131186, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 83, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 94, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 177, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1471526.484306, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 00:28:50 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 16:38:19 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 16:38:19 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      4989     5189.8  Left-Lateral-Ventricle            41.5632    15.2347    13.0000    97.0000    84.0000 
    82. 

  82.   2   5       218      255.1  Left-Inf-Lat-Vent                 51.7156    13.5477    14.0000    86.0000    72.0000 
    83. 

  83.   3   7     17329    17593.2  Left-Cerebellum-White-Matter      83.9642     6.3169    27.0000   100.0000    73.0000 
    84. 

  84.   4   8     60831    60938.2  Left-Cerebellum-Cortex            67.8757     9.8052     3.0000    99.0000    96.0000 
    85. 

  85.   5  10      8963     8745.4  Left-Thalamus-Proper              89.4598     8.4543    28.0000   112.0000    84.0000 
    86. 

  86.   6  11      3996     3922.3  Left-Caudate                      82.6949     6.3292    51.0000   107.0000    56.0000 
    87. 

  87.   7  12      5788     5867.7  Left-Putamen                      86.4247     5.4495    47.0000   107.0000    60.0000 
    88. 

  88.   8  13      2621     2528.6  Left-Pallidum                     95.8226     5.7966    61.0000   112.0000    51.0000 
    89. 

  89.   9  14       880      857.5  3rd-Ventricle                     47.7250    14.5403    21.0000    82.0000    61.0000 
    90. 

  90.  10  15      1782     1867.2  4th-Ventricle                     35.4299    10.5155    15.0000    75.0000    60.0000 
    91. 

  91.  11  16     22373    22025.8  Brain-Stem                        81.4320     8.8015    23.0000   115.0000    92.0000 
    92. 

  92.  12  17      4673     4434.1  Left-Hippocampus                  71.7710     8.6687    13.0000   105.0000    92.0000 
    93. 

  93.  13  18      1859     1797.0  Left-Amygdala                     70.3195     6.6989    44.0000    92.0000    48.0000 
    94. 

  94.  14  24       898      875.9  CSF                               62.6871    15.4502    26.0000   114.0000    88.0000 
    95. 

  95.  15  26       622      625.8  Left-Accumbens-area               78.2090     4.1274    61.0000    90.0000    29.0000 
    96. 

  96.  16  28      5431     5198.0  Left-VentralDC                    86.6351     9.2185    25.0000   109.0000    84.0000 
    97. 

  97.  17  30        23       33.5  Left-vessel                       59.8696     7.7653    39.0000    69.0000    30.0000 
    98. 

  98.  18  31       451      428.9  Left-choroid-plexus               53.9889    12.1210    24.0000    91.0000    67.0000 
    99. 

  99.  19  43      9938    10118.5  Right-Lateral-Ventricle           36.4269    11.8883    16.0000    89.0000    73.0000 
    100. 

  100.  20  44       402      426.5  Right-Inf-Lat-Vent                41.1766    13.8384    16.0000    84.0000    68.0000 
    101. 

  101.  21  46     16216    16522.2  Right-Cerebellum-White-Matter     84.6390     5.7117    39.0000   101.0000    62.0000 
    102. 

  102.  22  47     60616    60474.9  Right-Cerebellum-Cortex           69.0051     9.4540     0.0000   101.0000   101.0000 
    103. 

  103.  23  49      8702     8537.1  Right-Thalamus-Proper             88.1410     8.2423    34.0000   111.0000    77.0000 
    104. 

  104.  24  50      4285     4229.4  Right-Caudate                     83.2950     7.0902    49.0000   104.0000    55.0000 
    105. 

  105.  25  51      6245     6299.2  Right-Putamen                     87.5387     6.0900    58.0000   112.0000    54.0000 
    106. 

  106.  26  52      2155     2109.4  Right-Pallidum                    98.0501     5.2881    69.0000   113.0000    44.0000 
    107. 

  107.  27  53      4840     4617.8  Right-Hippocampus                 72.7766     9.6320    21.0000   110.0000    89.0000 
    108. 

  108.  28  54      2196     2109.2  Right-Amygdala                    72.8470     7.0375    37.0000    96.0000    59.0000 
    109. 

  109.  29  58       749      740.2  Right-Accumbens-area              79.0694     4.6509    59.0000   100.0000    41.0000 
    110. 

  110.  30  60      5041     4836.3  Right-VentralDC                   87.4926     9.5364    35.0000   111.0000    76.0000 
    111. 

  111.  31  62         8       18.0  Right-vessel                      63.8750     4.6426    58.0000    69.0000    11.0000 
    112. 

  112.  32  63       584      535.5  Right-choroid-plexus              52.3921    13.8342    21.0000    85.0000    64.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       905      886.1  WM-hypointensities                71.4530    13.7696    20.0000   107.0000    87.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       197      200.5  Optic-Chiasm                      78.2792    16.3551    41.0000   105.0000    64.0000 
    121. 

  121.  41 251      1201     1123.5  CC_Posterior                     101.4863    12.7017    44.0000   120.0000    76.0000 
    122. 

  122.  42 252       766      689.4  CC_Mid_Posterior                  97.3577    14.8592    24.0000   117.0000    93.0000 
    123. 

  123.  43 253       742      645.6  CC_Central                        95.0876    16.9919    38.0000   115.0000    77.0000 
    124. 

  124.  44 254       943      799.8  CC_Mid_Anterior                   96.7052    16.1490    27.0000   119.0000    92.0000 
    125. 

  125.  45 255      1045      992.0  CC_Anterior                       97.2526    21.7260    18.0000   132.0000   114.0000 
    126.