mri_nu_correct.mni.log.bak 5.6 KB

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  1. /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050660/mri
  2. /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
  3. --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
  4. nIters 1
  5. $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
  6. Linux tars-542 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
  7. Sat Oct 7 16:10:21 CEST 2017
  8. Program nu_correct, built from:
  9. Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
  10. tmpdir is ./tmp.mri_nu_correct.mni.1777
  11. /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050660/mri
  12. mri_convert orig.mgz ./tmp.mri_nu_correct.mni.1777/nu0.mnc -odt float
  13. mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.1777/nu0.mnc -odt float
  14. $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
  15. reading from orig.mgz...
  16. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
  17. i_ras = (-1, 0, 0)
  18. j_ras = (0, 0, -1)
  19. k_ras = (0, 1, 0)
  20. changing data type from uchar to float (noscale = 0)...
  21. writing to ./tmp.mri_nu_correct.mni.1777/nu0.mnc...
  22. --------------------------------------------------------
  23. Iteration 1 Sat Oct 7 16:10:23 CEST 2017
  24. nu_correct -clobber ./tmp.mri_nu_correct.mni.1777/nu0.mnc ./tmp.mri_nu_correct.mni.1777/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.1777/0/ -iterations 1000 -distance 50
  25. [ntraut@tars-542:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050660/mri/] [2017-10-07 16:10:24] running:
  26. /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.1777/0/ ./tmp.mri_nu_correct.mni.1777/nu0.mnc ./tmp.mri_nu_correct.mni.1777/nu1.imp
  27. Processing:.................................................................Done
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  65. Processing:.................................................................Done
  66. Number of iterations: 39
  67. CV of field change: 0.00099166
  68. mri_convert ./tmp.mri_nu_correct.mni.1777/nu1.mnc orig_nu.mgz --like orig.mgz --conform
  69. mri_convert.bin ./tmp.mri_nu_correct.mni.1777/nu1.mnc orig_nu.mgz --like orig.mgz --conform
  70. $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
  71. reading from ./tmp.mri_nu_correct.mni.1777/nu1.mnc...
  72. TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
  73. i_ras = (-1, 0, 0)
  74. j_ras = (0, 0, -1)
  75. k_ras = (0, 1, 0)
  76. INFO: transform src into the like-volume: orig.mgz
  77. changing data type from float to uchar (noscale = 0)...
  78. MRIchangeType: Building histogram
  79. writing to orig_nu.mgz...
  80. Sat Oct 7 16:11:25 CEST 2017
  81. mri_nu_correct.mni done