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ABIDE_fs-6.0.0
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0050604
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050604 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-911
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050604
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1074810.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1060970.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1060372.541558, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 10127.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 245677.078948, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 238601.990731, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 484279.069679, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 190149.826910, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 187581.644969, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 377731.471879, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 59740.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 660582.069679, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 933551.541558, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 923424.541558, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 922235.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1485429.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.759415, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.049541, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 75, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 62, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 137, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1415313.260313, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 09:14:07 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 02:07:55 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 02:07:55 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      4354     4717.5  Left-Lateral-Ventricle            34.7738    14.0423     4.0000    84.0000    80.0000 
    82. 

  82.   2   5       424      490.5  Left-Inf-Lat-Vent                 39.2146    11.8101     8.0000    72.0000    64.0000 
    83. 

  83.   3   7     11496    11833.5  Left-Cerebellum-White-Matter      83.2149     7.4596    30.0000   103.0000    73.0000 
    84. 

  84.   4   8     57267    57341.7  Left-Cerebellum-Cortex            62.2212     8.6156    21.0000    97.0000    76.0000 
    85. 

  85.   5  10      7821     7398.8  Left-Thalamus-Proper              78.0859     9.3610    33.0000    99.0000    66.0000 
    86. 

  86.   6  11      4194     4003.3  Left-Caudate                      73.3362     8.0823    43.0000    96.0000    53.0000 
    87. 

  87.   7  12      4940     4896.7  Left-Putamen                      81.3287     4.7644    64.0000    98.0000    34.0000 
    88. 

  88.   8  13      2184     2060.3  Left-Pallidum                     88.9199     3.4173    79.0000   100.0000    21.0000 
    89. 

  89.   9  14       976     1077.6  3rd-Ventricle                     42.1486    10.9450    18.0000    72.0000    54.0000 
    90. 

  90.  10  15      1807     1979.9  4th-Ventricle                     27.2391    11.2120     6.0000    67.0000    61.0000 
    91. 

  91.  11  16     20500    20229.5  Brain-Stem                        78.9011    10.0887    26.0000   154.0000   128.0000 
    92. 

  92.  12  17      4487     4300.0  Left-Hippocampus                  64.4150     7.5428    23.0000    94.0000    71.0000 
    93. 

  93.  13  18      1465     1380.5  Left-Amygdala                     63.8594     7.4957    31.0000    88.0000    57.0000 
    94. 

  94.  14  24       930      954.6  CSF                               46.2871    11.3506    16.0000    68.0000    52.0000 
    95. 

  95.  15  26       545      529.0  Left-Accumbens-area               70.3963     3.9927    54.0000    81.0000    27.0000 
    96. 

  96.  16  28      4193     3944.5  Left-VentralDC                    82.1405    10.4771    32.0000   108.0000    76.0000 
    97. 

  97.  17  30         0        0.0  Left-vessel                        0.0000     0.0000     0.0000     0.0000     0.0000 
    98. 

  98.  18  31       373      311.4  Left-choroid-plexus               51.9920    14.6025    26.0000    82.0000    56.0000 
    99. 

  99.  19  43      4066     4371.9  Right-Lateral-Ventricle           35.9442    14.3030     9.0000    81.0000    72.0000 
    100. 

  100.  20  44       497      558.6  Right-Inf-Lat-Vent                36.0382    11.5546    11.0000    83.0000    72.0000 
    101. 

  101.  21  46     10563    11118.0  Right-Cerebellum-White-Matter     83.1969     6.2445    38.0000    99.0000    61.0000 
    102. 

  102.  22  47     59161    58944.2  Right-Cerebellum-Cortex           62.7080     8.1468    16.0000   102.0000    86.0000 
    103. 

  103.  23  49      7907     7515.6  Right-Thalamus-Proper             79.4063     8.9260    36.0000   100.0000    64.0000 
    104. 

  104.  24  50      4241     4027.2  Right-Caudate                     72.7519     8.4830    43.0000    99.0000    56.0000 
    105. 

  105.  25  51      4921     4852.9  Right-Putamen                     80.5316     5.2911    62.0000    97.0000    35.0000 
    106. 

  106.  26  52      2073     1917.8  Right-Pallidum                    88.3343     3.9245    72.0000   101.0000    29.0000 
    107. 

  107.  27  53      4509     4363.2  Right-Hippocampus                 65.3129     7.5560    21.0000    95.0000    74.0000 
    108. 

  108.  28  54      1584     1490.4  Right-Amygdala                    63.0505     6.7412    32.0000    81.0000    49.0000 
    109. 

  109.  29  58       651      604.1  Right-Accumbens-area              70.7803     4.9114    51.0000    88.0000    37.0000 
    110. 

  110.  30  60      4084     3783.1  Right-VentralDC                   81.9420    11.1973    31.0000   121.0000    90.0000 
    111. 

  111.  31  62         0        0.0  Right-vessel                       0.0000     0.0000     0.0000     0.0000     0.0000 
    112. 

  112.  32  63       413      364.8  Right-choroid-plexus              54.2518    14.1935    24.0000    89.0000    65.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      2191     1947.9  WM-hypointensities                68.8809    11.3024    10.0000    97.0000    87.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       144      153.0  Optic-Chiasm                      76.5556    19.6845    25.0000   110.0000    85.0000 
    121. 

  121.  41 251       845      793.6  CC_Posterior                      91.7598    12.5833    40.0000   108.0000    68.0000 
    122. 

  122.  42 252       642      563.0  CC_Mid_Posterior                  85.2975    12.5037    48.0000   106.0000    58.0000 
    123. 

  123.  43 253       516      459.8  CC_Central                        88.3876    15.3621    43.0000   107.0000    64.0000 
    124. 

  124.  44 254       467      406.4  CC_Mid_Anterior                   90.3148    15.0029    40.0000   110.0000    70.0000 
    125. 

  125.  45 255       828      738.1  CC_Anterior                       96.2500    16.4662    40.0000   135.0000    95.0000 
    126.