We use cookies to ensure you get the best experience on our website
Home Explore Help News
Register Sign In
reference-preprocessing
/
ABIDE_fs-6.0.0
5
0
Fork 0
Files Issues 0 Pull Requests 0 Wiki
Branch: master
Branches Tags
ABIDE_fs-6.0.0
/
0050603
/
stats
/
aseg.stats

aseg.stats 9.6 KB
Permalink History Download

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125 
  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050603 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-904
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050603
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1260396.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1239373.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1239059.495993, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 15482.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 263109.848526, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 266835.931502, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 529945.780028, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 241213.943612, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 240877.772353, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 482091.715965, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 69460.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 721394.780028, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1100172.495993, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1084690.495993, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1081643.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1736688.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.832290, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.146804, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 43, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 33, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 76, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1514372.036378, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 09:51:34 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 02:09:19 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 02:09:19 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      5961     6371.8  Left-Lateral-Ventricle            28.1978    14.1839     3.0000    85.0000    82.0000 
    82. 

  82.   2   5       299      352.1  Left-Inf-Lat-Vent                 44.9766    12.0626    15.0000    75.0000    60.0000 
    83. 

  83.   3   7     18197    18764.9  Left-Cerebellum-White-Matter      81.4263     7.3725    29.0000   105.0000    76.0000 
    84. 

  84.   4   8     59987    60044.7  Left-Cerebellum-Cortex            56.3006     9.1969     9.0000    88.0000    79.0000 
    85. 

  85.   5  10      8947     8473.0  Left-Thalamus-Proper              80.0447     9.9347    27.0000   104.0000    77.0000 
    86. 

  86.   6  11      4105     3894.9  Left-Caudate                      69.9508     9.4736    39.0000    99.0000    60.0000 
    87. 

  87.   7  12      6371     6186.7  Left-Putamen                      78.4637     6.2464    60.0000    99.0000    39.0000 
    88. 

  88.   8  13      2501     2338.4  Left-Pallidum                     89.7893     4.2890    76.0000   102.0000    26.0000 
    89. 

  89.   9  14      1180     1308.6  3rd-Ventricle                     32.0144    12.1876     9.0000    68.0000    59.0000 
    90. 

  90.  10  15      2710     2928.6  4th-Ventricle                     23.6055    10.0775     6.0000    58.0000    52.0000 
    91. 

  91.  11  16     22320    22248.7  Brain-Stem                        80.0806     9.5602    23.0000   102.0000    79.0000 
    92. 

  92.  12  17      4316     4135.8  Left-Hippocampus                  64.8026     8.1084    35.0000    95.0000    60.0000 
    93. 

  93.  13  18      1609     1561.6  Left-Amygdala                     62.4425     6.4018    38.0000    81.0000    43.0000 
    94. 

  94.  14  24      1651     1620.5  CSF                               35.6820    13.5768     6.0000    73.0000    67.0000 
    95. 

  95.  15  26       771      731.9  Left-Accumbens-area               64.6939     5.9077    29.0000    81.0000    52.0000 
    96. 

  96.  16  28      5323     5103.3  Left-VentralDC                    85.3682    10.3638    35.0000   106.0000    71.0000 
    97. 

  97.  17  30         2        4.4  Left-vessel                       64.0000     5.6569    60.0000    68.0000     8.0000 
    98. 

  98.  18  31       756      662.8  Left-choroid-plexus               47.2460    13.2421    22.0000    81.0000    59.0000 
    99. 

  99.  19  43      7379     7830.6  Right-Lateral-Ventricle           27.1499    13.8904     3.0000    88.0000    85.0000 
    100. 

  100.  20  44       367      458.0  Right-Inf-Lat-Vent                45.3597    10.4362    16.0000    75.0000    59.0000 
    101. 

  101.  21  46     17365    17896.0  Right-Cerebellum-White-Matter     79.9453     7.0982    29.0000    96.0000    67.0000 
    102. 

  102.  22  47     60277    60046.0  Right-Cerebellum-Cortex           54.7105     9.2392    11.0000    88.0000    77.0000 
    103. 

  103.  23  49      9270     8772.4  Right-Thalamus-Proper             78.6922     9.3693    32.0000    98.0000    66.0000 
    104. 

  104.  24  50      4841     4538.8  Right-Caudate                     68.3842    10.6514    35.0000   101.0000    66.0000 
    105. 

  105.  25  51      6230     6175.8  Right-Putamen                     75.3177     5.8442    48.0000    92.0000    44.0000 
    106. 

  106.  26  52      2450     2280.4  Right-Pallidum                    86.8224     4.5375    71.0000   100.0000    29.0000 
    107. 

  107.  27  53      5047     4803.6  Right-Hippocampus                 63.9178     8.3084    21.0000    98.0000    77.0000 
    108. 

  108.  28  54      1751     1658.4  Right-Amygdala                    62.2439     6.5308    30.0000    85.0000    55.0000 
    109. 

  109.  29  58       979      897.2  Right-Accumbens-area              65.3350     6.0806    30.0000    85.0000    55.0000 
    110. 

  110.  30  60      4984     4781.4  Right-VentralDC                   83.7544    10.2690    38.0000   106.0000    68.0000 
    111. 

  111.  31  62         9       22.3  Right-vessel                      54.1111     5.4416    46.0000    60.0000    14.0000 
    112. 

  112.  32  63       732      644.7  Right-choroid-plexus              47.7828    13.0636    21.0000    84.0000    63.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      2888     2377.2  WM-hypointensities                70.4463    12.2599    33.0000   104.0000    71.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       185      197.1  Optic-Chiasm                      68.7946    17.9740    19.0000   101.0000    82.0000 
    121. 

  121.  41 251       647      596.7  CC_Posterior                      93.6646    13.7569    44.0000   110.0000    66.0000 
    122. 

  122.  42 252       333      282.9  CC_Mid_Posterior                  81.6516    18.2839    27.0000   105.0000    78.0000 
    123. 

  123.  43 253       446      394.4  CC_Central                        83.0852    15.5558    44.0000   105.0000    61.0000 
    124. 

  124.  44 254       409      356.4  CC_Mid_Anterior                   86.7359    16.5769    40.0000   107.0000    67.0000 
    125. 

  125.  45 255       610      589.3  CC_Anterior                       94.9410    11.6815    38.0000   116.0000    78.0000 
    126.