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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050383
- # sysname Linux
- # hostname tars-556
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050383
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1322249.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1311101.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1310115.900512, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8623.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 301011.143125, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 302481.778664, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 603492.921788, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 261543.567050, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 256693.411674, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 518236.978724, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 67381.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 769485.921788, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1202409.900512, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1193786.900512, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1189936.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1765054.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.854085, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.140107, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 95, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 87, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 182, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1548147.438563, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 10:05:02
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 00:45:34
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 00:45:34
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3709 4058.5 Left-Lateral-Ventricle 43.7298 15.1218 15.0000 94.0000 79.0000
- 2 5 325 367.2 Left-Inf-Lat-Vent 46.6554 13.0785 18.0000 86.0000 68.0000
- 3 7 11133 11848.2 Left-Cerebellum-White-Matter 81.6642 6.5938 37.0000 101.0000 64.0000
- 4 8 45667 45278.2 Left-Cerebellum-Cortex 58.3716 9.3300 17.0000 89.0000 72.0000
- 5 10 8764 8416.1 Left-Thalamus-Proper 84.8662 8.1614 39.0000 107.0000 68.0000
- 6 11 4113 4051.8 Left-Caudate 77.4240 7.1235 44.0000 100.0000 56.0000
- 7 12 6619 6656.2 Left-Putamen 82.8618 5.2443 60.0000 103.0000 43.0000
- 8 13 2203 2093.0 Left-Pallidum 95.6804 4.9289 78.0000 113.0000 35.0000
- 9 14 658 745.4 3rd-Ventricle 47.6170 12.5174 13.0000 82.0000 69.0000
- 10 15 1116 1177.1 4th-Ventricle 31.0305 12.1634 10.0000 67.0000 57.0000
- 11 16 17856 17551.7 Brain-Stem 82.1416 10.8103 14.0000 200.0000 186.0000
- 12 17 4819 4604.9 Left-Hippocampus 68.6468 8.4935 32.0000 159.0000 127.0000
- 13 18 2039 1977.8 Left-Amygdala 68.8784 6.3123 42.0000 92.0000 50.0000
- 14 24 755 762.5 CSF 55.3947 11.7743 25.0000 98.0000 73.0000
- 15 26 622 651.0 Left-Accumbens-area 74.0289 6.2389 40.0000 111.0000 71.0000
- 16 28 4777 4478.7 Left-VentralDC 87.9533 13.2176 28.0000 178.0000 150.0000
- 17 30 12 23.3 Left-vessel 60.0000 4.4924 51.0000 67.0000 16.0000
- 18 31 358 330.8 Left-choroid-plexus 54.5642 13.0832 28.0000 83.0000 55.0000
- 19 43 3510 3845.8 Right-Lateral-Ventricle 44.8840 14.3795 16.0000 91.0000 75.0000
- 20 44 363 403.3 Right-Inf-Lat-Vent 42.6336 14.8499 11.0000 83.0000 72.0000
- 21 46 11242 11977.8 Right-Cerebellum-White-Matter 81.1168 6.5233 39.0000 103.0000 64.0000
- 22 47 50497 50082.2 Right-Cerebellum-Cortex 57.6739 9.2856 1.0000 91.0000 90.0000
- 23 49 8380 8049.3 Right-Thalamus-Proper 83.9572 7.9299 38.0000 103.0000 65.0000
- 24 50 4184 4184.9 Right-Caudate 76.7402 6.5289 47.0000 97.0000 50.0000
- 25 51 6478 6559.0 Right-Putamen 81.8538 5.0163 60.0000 102.0000 42.0000
- 26 52 2150 1993.2 Right-Pallidum 94.2470 4.9831 78.0000 108.0000 30.0000
- 27 53 4719 4560.0 Right-Hippocampus 67.5527 8.4648 38.0000 169.0000 131.0000
- 28 54 2172 2075.2 Right-Amygdala 67.0668 7.8578 19.0000 88.0000 69.0000
- 29 58 651 631.8 Right-Accumbens-area 74.2550 5.9420 51.0000 112.0000 61.0000
- 30 60 4739 4434.9 Right-VentralDC 87.1026 13.2625 19.0000 177.0000 158.0000
- 31 62 6 11.5 Right-vessel 64.3333 3.3862 61.0000 70.0000 9.0000
- 32 63 358 309.0 Right-choroid-plexus 55.1285 10.8002 29.0000 79.0000 50.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 2243 2114.8 WM-hypointensities 73.9755 9.5364 34.0000 108.0000 74.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 185 167.2 Optic-Chiasm 78.9459 18.5087 25.0000 122.0000 97.0000
- 41 251 1095 1010.3 CC_Posterior 96.9434 14.6871 41.0000 114.0000 73.0000
- 42 252 706 644.6 CC_Mid_Posterior 88.5963 12.0172 40.0000 108.0000 68.0000
- 43 253 926 832.6 CC_Central 86.4125 13.1862 40.0000 111.0000 71.0000
- 44 254 948 833.0 CC_Mid_Anterior 91.9779 14.4091 48.0000 161.0000 113.0000
- 45 255 1080 1036.3 CC_Anterior 104.8889 21.0226 47.0000 181.0000 134.0000
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