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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050370
- # sysname Linux
- # hostname tars-910
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050370
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1260287.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1252194.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1251653.136313, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 5559.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 285470.059051, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 282466.175307, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 567936.234358, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 245166.439200, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 241727.462755, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 486893.901955, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 53977.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 739108.234358, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1116967.136313, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1111408.136313, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1109213.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1600762.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.819004, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.040263, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 78, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 67, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 145, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1538805.368098, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 09:28:59
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 00:40:42
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 00:40:42
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 2495 2684.7 Left-Lateral-Ventricle 52.0697 15.2033 13.0000 95.0000 82.0000
- 2 5 139 201.8 Left-Inf-Lat-Vent 45.8633 12.3331 7.0000 71.0000 64.0000
- 3 7 13278 13724.4 Left-Cerebellum-White-Matter 83.8071 7.2945 17.0000 124.0000 107.0000
- 4 8 58100 58032.5 Left-Cerebellum-Cortex 62.2139 9.8227 0.0000 108.0000 108.0000
- 5 10 6764 6429.1 Left-Thalamus-Proper 82.5140 8.8476 42.0000 106.0000 64.0000
- 6 11 3359 3448.7 Left-Caudate 73.6669 5.9662 53.0000 95.0000 42.0000
- 7 12 4722 4589.6 Left-Putamen 81.4447 5.6780 61.0000 101.0000 40.0000
- 8 13 1497 1448.3 Left-Pallidum 94.2712 4.5917 79.0000 109.0000 30.0000
- 9 14 561 603.6 3rd-Ventricle 53.4635 12.1274 17.0000 83.0000 66.0000
- 10 15 1144 1222.5 4th-Ventricle 30.7893 14.5820 0.0000 74.0000 74.0000
- 11 16 21411 21292.5 Brain-Stem 86.1373 10.1987 18.0000 152.0000 134.0000
- 12 17 3860 3737.8 Left-Hippocampus 67.2109 8.0510 33.0000 114.0000 81.0000
- 13 18 1652 1571.1 Left-Amygdala 68.9800 7.0354 37.0000 91.0000 54.0000
- 14 24 829 829.1 CSF 58.4753 11.8770 28.0000 98.0000 70.0000
- 15 26 599 616.7 Left-Accumbens-area 70.0417 4.1267 59.0000 88.0000 29.0000
- 16 28 4423 4214.1 Left-VentralDC 87.9401 11.6978 16.0000 157.0000 141.0000
- 17 30 0 0.0 Left-vessel 0.0000 0.0000 0.0000 0.0000 0.0000
- 18 31 174 178.1 Left-choroid-plexus 62.2989 9.4955 34.0000 88.0000 54.0000
- 19 43 2365 2583.3 Right-Lateral-Ventricle 49.0558 15.5154 7.0000 89.0000 82.0000
- 20 44 175 212.7 Right-Inf-Lat-Vent 45.8000 11.7625 16.0000 74.0000 58.0000
- 21 46 12371 12793.5 Right-Cerebellum-White-Matter 84.2966 6.3534 41.0000 106.0000 65.0000
- 22 47 58235 58204.9 Right-Cerebellum-Cortex 63.4059 9.9822 0.0000 155.0000 155.0000
- 23 49 6862 6529.1 Right-Thalamus-Proper 82.1852 8.3535 41.0000 103.0000 62.0000
- 24 50 3697 3779.9 Right-Caudate 74.4720 6.3516 51.0000 95.0000 44.0000
- 25 51 4507 4497.9 Right-Putamen 80.0914 5.6856 59.0000 101.0000 42.0000
- 26 52 1568 1476.6 Right-Pallidum 92.0166 4.7235 65.0000 107.0000 42.0000
- 27 53 4051 3876.1 Right-Hippocampus 66.8993 8.2914 17.0000 112.0000 95.0000
- 28 54 1664 1592.8 Right-Amygdala 68.5811 6.5609 44.0000 111.0000 67.0000
- 29 58 530 503.7 Right-Accumbens-area 70.8113 5.6336 57.0000 105.0000 48.0000
- 30 60 4288 4053.5 Right-VentralDC 87.7325 11.3227 31.0000 115.0000 84.0000
- 31 62 2 8.1 Right-vessel 54.0000 2.8284 52.0000 56.0000 4.0000
- 32 63 211 202.9 Right-choroid-plexus 62.4645 9.3101 34.0000 77.0000 43.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 977 948.0 WM-hypointensities 74.3091 8.7258 45.0000 104.0000 59.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 148 137.5 Optic-Chiasm 77.1824 19.1546 24.0000 115.0000 91.0000
- 41 251 912 869.9 CC_Posterior 97.2697 12.5124 48.0000 112.0000 64.0000
- 42 252 525 461.1 CC_Mid_Posterior 87.9581 12.9548 39.0000 107.0000 68.0000
- 43 253 1041 962.0 CC_Central 89.3199 10.9243 50.0000 108.0000 58.0000
- 44 254 944 843.7 CC_Mid_Anterior 89.2659 13.9337 30.0000 112.0000 82.0000
- 45 255 999 955.3 CC_Anterior 98.9089 14.6725 43.0000 170.0000 127.0000
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