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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050342 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-557
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050342
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1241859.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1215266.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1215077.019306, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 22055.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 291356.675737, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 286344.578450, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 577701.254188, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 220785.843055, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 211255.922064, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432041.765118, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 55618.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 756159.254188, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1091699.019306, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1069644.019306, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1065482.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1675351.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.809883, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.092587, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 103, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 114, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 217, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1533380.278013, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 08:06:06 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 00:07:33 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 00:07:33 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     10846    11034.8  Left-Lateral-Ventricle            31.9728    12.8204     0.0000    88.0000    88.0000 
    82. 

  82.   2   5       218      292.6  Left-Inf-Lat-Vent                 51.9817    11.0040    26.0000    82.0000    56.0000 
    83. 

  83.   3   7     13792    14412.0  Left-Cerebellum-White-Matter      81.3650     6.6022    26.0000   101.0000    75.0000 
    84. 

  84.   4   8     63106    63050.3  Left-Cerebellum-Cortex            59.5354    10.2489     0.0000    98.0000    98.0000 
    85. 

  85.   5  10      7599     7320.8  Left-Thalamus-Proper              80.6767     9.0148    39.0000   107.0000    68.0000 
    86. 

  86.   6  11      3298     3246.3  Left-Caudate                      75.4112     8.5791    43.0000   101.0000    58.0000 
    87. 

  87.   7  12      4504     4599.0  Left-Putamen                      78.3561     5.7083    54.0000    98.0000    44.0000 
    88. 

  88.   8  13      1608     1456.7  Left-Pallidum                     90.0224     5.0464    70.0000   103.0000    33.0000 
    89. 

  89.   9  14      1102     1110.7  3rd-Ventricle                     37.8122    14.7319     6.0000    71.0000    65.0000 
    90. 

  90.  10  15      2359     2412.9  4th-Ventricle                     21.2094    13.7334     0.0000    69.0000    69.0000 
    91. 

  91.  11  16     18919    18872.8  Brain-Stem                        82.8274    10.3676    17.0000   114.0000    97.0000 
    92. 

  92.  12  17      3874     3636.7  Left-Hippocampus                  68.0465     7.5827    36.0000    99.0000    63.0000 
    93. 

  93.  13  18      1617     1560.3  Left-Amygdala                     72.1231     6.7751    46.0000   100.0000    54.0000 
    94. 

  94.  14  24      1077      980.6  CSF                               49.1513    13.0551    16.0000    90.0000    74.0000 
    95. 

  95.  15  26       573      557.4  Left-Accumbens-area               68.6195     5.4809    48.0000    85.0000    37.0000 
    96. 

  96.  16  28      4684     4570.0  Left-VentralDC                    86.6518    10.4676    24.0000   120.0000    96.0000 
    97. 

  97.  17  30        58       76.5  Left-vessel                       49.4655    10.6363    20.0000    70.0000    50.0000 
    98. 

  98.  18  31       505      457.7  Left-choroid-plexus               50.7307    12.6243    10.0000    90.0000    80.0000 
    99. 

  99.  19  43      9891    10079.5  Right-Lateral-Ventricle           32.9986    13.3197     0.0000    93.0000    93.0000 
    100. 

  100.  20  44       236      268.4  Right-Inf-Lat-Vent                46.5169    15.2808     0.0000    76.0000    76.0000 
    101. 

  101.  21  46     13017    13803.8  Right-Cerebellum-White-Matter     82.4974     6.6835    37.0000   103.0000    66.0000 
    102. 

  102.  22  47     57348    57077.4  Right-Cerebellum-Cortex           58.7305    10.7707     0.0000    93.0000    93.0000 
    103. 

  103.  23  49      7472     7210.2  Right-Thalamus-Proper             79.7251     8.9939    29.0000   102.0000    73.0000 
    104. 

  104.  24  50      3539     3429.2  Right-Caudate                     72.9130     8.7063    31.0000    97.0000    66.0000 
    105. 

  105.  25  51      5095     4977.3  Right-Putamen                     79.6285     6.6232    43.0000   102.0000    59.0000 
    106. 

  106.  26  52      1435     1353.1  Right-Pallidum                    92.3805     4.8839    72.0000   106.0000    34.0000 
    107. 

  107.  27  53      3748     3531.1  Right-Hippocampus                 65.1942     7.5207    39.0000    88.0000    49.0000 
    108. 

  108.  28  54      1442     1406.9  Right-Amygdala                    71.0485     6.3467    44.0000    97.0000    53.0000 
    109. 

  109.  29  58       551      525.1  Right-Accumbens-area              68.5935     6.3275    52.0000    90.0000    38.0000 
    110. 

  110.  30  60      4637     4486.1  Right-VentralDC                   85.5624    11.1569     0.0000   122.0000   122.0000 
    111. 

  111.  31  62         9       17.7  Right-vessel                      56.2222     6.9422    44.0000    67.0000    23.0000 
    112. 

  112.  32  63       433      393.6  Right-choroid-plexus              52.8268    11.5074    22.0000    79.0000    57.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1607     1413.7  WM-hypointensities                70.9483    11.7183    12.0000   103.0000    91.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       159      157.1  Optic-Chiasm                      77.7862    25.0999     1.0000   136.0000   135.0000 
    121. 

  121.  41 251       785      698.7  CC_Posterior                      97.4255    19.7613    21.0000   124.0000   103.0000 
    122. 

  122.  42 252       606      538.2  CC_Mid_Posterior                  92.2409    16.0721    21.0000   120.0000    99.0000 
    123. 

  123.  43 253       555      511.9  CC_Central                        92.6306    16.6073    18.0000   115.0000    97.0000 
    124. 

  124.  44 254       511      470.2  CC_Mid_Anterior                   99.4227    18.1383    44.0000   124.0000    80.0000 
    125. 

  125.  45 255       917      865.7  CC_Anterior                      100.6663    16.4231    42.0000   125.0000    83.0000 
    126.