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0050340
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050340 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-593
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050340
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 6338.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 211472.677837, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 205827.584792, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 417300.262629, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1454196.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1444308.408748, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 06:29:56 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/08 00:15:26 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/08 00:15:26 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2903     2884.4  wm-lh-bankssts                   100.5329     7.4845    78.0000   119.0000    41.0000 
    66. 

  66.   2 3002      2358     2322.0  wm-lh-caudalanteriorcingulate     98.1387     7.5372    56.0000   114.0000    58.0000 
    67. 

  67.   3 3003      5875     5867.3  wm-lh-caudalmiddlefrontal         95.6257     7.0035    73.0000   113.0000    40.0000 
    68. 

  68.   4 3005      2032     2050.6  wm-lh-cuneus                      97.9178    10.4418    72.0000   127.0000    55.0000 
    69. 

  69.   5 3006       702      690.9  wm-lh-entorhinal                  88.5798     9.8603    65.0000   113.0000    48.0000 
    70. 

  70.   6 3007      5492     5387.2  wm-lh-fusiform                    91.7746     9.0351    64.0000   115.0000    51.0000 
    71. 

  71.   7 3008      8427     8481.7  wm-lh-inferiorparietal            98.8793     9.0893    72.0000   124.0000    52.0000 
    72. 

  72.   8 3009      6344     6343.7  wm-lh-inferiortemporal            92.5620     9.3773    65.0000   127.0000    62.0000 
    73. 

  73.   9 3010      3368     3325.3  wm-lh-isthmuscingulate            98.9807     9.5070    48.0000   115.0000    67.0000 
    74. 

  74.  10 3011      9337     9453.6  wm-lh-lateraloccipital            91.9787     9.5257    67.0000   119.0000    52.0000 
    75. 

  75.  11 3012      7194     7120.1  wm-lh-lateralorbitofrontal        96.7085     8.6158    72.0000   117.0000    45.0000 
    76. 

  76.  12 3013      6134     6096.4  wm-lh-lingual                     89.9560     9.8736    49.0000   119.0000    70.0000 
    77. 

  77.  13 3014      4353     4321.3  wm-lh-medialorbitofrontal         92.7969    10.6586    39.0000   116.0000    77.0000 
    78. 

  78.  14 3015      5214     5361.0  wm-lh-middletemporal              90.4862     9.2012    62.0000   112.0000    50.0000 
    79. 

  79.  15 3016      1085     1174.9  wm-lh-parahippocampal             85.2470     7.1360    60.0000   103.0000    43.0000 
    80. 

  80.  16 3017      3939     3950.4  wm-lh-paracentral                 98.6776     7.3978    75.0000   115.0000    40.0000 
    81. 

  81.  17 3018      3553     3599.1  wm-lh-parsopercularis             99.9505     7.5337    77.0000   118.0000    41.0000 
    82. 

  82.  18 3019       965     1008.0  wm-lh-parsorbitalis               96.1689     8.4837    75.0000   116.0000    41.0000 
    83. 

  83.  19 3020      2878     2893.3  wm-lh-parstriangularis            99.0539     7.9442    74.0000   116.0000    42.0000 
    84. 

  84.  20 3021      3284     3175.6  wm-lh-pericalcarine               95.2677     9.7106    70.0000   120.0000    50.0000 
    85. 

  85.  21 3022      6149     6319.2  wm-lh-postcentral                 95.6014     8.5141    73.0000   119.0000    46.0000 
    86. 

  86.  22 3023      4014     3878.3  wm-lh-posteriorcingulate          94.4888     7.9227    47.0000   111.0000    64.0000 
    87. 

  87.  23 3024     12190    12281.4  wm-lh-precentral                  98.4440     7.5583    70.0000   122.0000    52.0000 
    88. 

  88.  24 3025      7101     6943.0  wm-lh-precuneus                   98.7800     9.5723    50.0000   120.0000    70.0000 
    89. 

  89.  25 3026      2259     2207.9  wm-lh-rostralanteriorcingulate    95.8380    10.4832    44.0000   115.0000    71.0000 
    90. 

  90.  26 3027     12526    12562.7  wm-lh-rostralmiddlefrontal        98.2746     9.0910    70.0000   120.0000    50.0000 
    91. 

  91.  27 3028     16562    16609.0  wm-lh-superiorfrontal             97.0095     8.2362    70.0000   120.0000    50.0000 
    92. 

  92.  28 3029     10910    10999.2  wm-lh-superiorparietal           100.3762     8.5021    75.0000   125.0000    50.0000 
    93. 

  93.  29 3030      6508     6834.8  wm-lh-superiortemporal            98.1616     8.7167    71.0000   127.0000    56.0000 
    94. 

  94.  30 3031      7194     7216.4  wm-lh-supramarginal               97.9140     8.6987    66.0000   122.0000    56.0000 
    95. 

  95.  31 3032       281      293.2  wm-lh-frontalpole                 94.2883     8.7001    74.0000   114.0000    40.0000 
    96. 

  96.  32 3033       599      662.5  wm-lh-temporalpole                89.5476     7.8551    73.0000   111.0000    38.0000 
    97. 

  97.  33 3034       593      612.3  wm-lh-transversetemporal         101.2142     7.3984    82.0000   122.0000    40.0000 
    98. 

  98.  34 3035      9481     9519.3  wm-lh-insula                      93.7017     9.6754     7.0000   114.0000   107.0000 
    99. 

  99.  35 4001      2811     2777.1  wm-rh-bankssts                   100.4418     8.2824    73.0000   125.0000    52.0000 
    100. 

  100.  36 4002      2768     2702.8  wm-rh-caudalanteriorcingulate     95.3855     8.2849    59.0000   114.0000    55.0000 
    101. 

  101.  37 4003      5481     5500.1  wm-rh-caudalmiddlefrontal         93.8836     6.5379    72.0000   108.0000    36.0000 
    102. 

  102.  38 4005      1933     1925.8  wm-rh-cuneus                      97.0047    11.3239    70.0000   121.0000    51.0000 
    103. 

  103.  39 4006       729      765.0  wm-rh-entorhinal                  86.2867     7.6521    66.0000   104.0000    38.0000 
    104. 

  104.  40 4007      5209     5209.1  wm-rh-fusiform                    92.8366     9.9180    68.0000   116.0000    48.0000 
    105. 

  105.  41 4008     10265    10330.3  wm-rh-inferiorparietal            96.2211     9.7432    68.0000   124.0000    56.0000 
    106. 

  106.  42 4009      5446     5483.4  wm-rh-inferiortemporal            90.0096     8.8452    65.0000   124.0000    59.0000 
    107. 

  107.  43 4010      3100     3094.1  wm-rh-isthmuscingulate            98.2303     8.1879    45.0000   112.0000    67.0000 
    108. 

  108.  44 4011      8108     8223.2  wm-rh-lateraloccipital            93.5486     9.1015    68.0000   122.0000    54.0000 
    109. 

  109.  45 4012      7659     7549.7  wm-rh-lateralorbitofrontal        93.3591     9.1821    46.0000   114.0000    68.0000 
    110. 

  110.  46 4013      5180     5162.7  wm-rh-lingual                     91.8934     9.1233    46.0000   116.0000    70.0000 
    111. 

  111.  47 4014      3811     3781.2  wm-rh-medialorbitofrontal         91.8069    10.2807    29.0000   115.0000    86.0000 
    112. 

  112.  48 4015      6210     6348.9  wm-rh-middletemporal              89.7762     9.4876    64.0000   115.0000    51.0000 
    113. 

  113.  49 4016      1441     1501.6  wm-rh-parahippocampal             87.0382     8.3358    55.0000   109.0000    54.0000 
    114. 

  114.  50 4017      4429     4348.2  wm-rh-paracentral                 97.0822     6.9656    73.0000   120.0000    47.0000 
    115. 

  115.  51 4018      3016     3054.3  wm-rh-parsopercularis             97.2616     7.6338    72.0000   121.0000    49.0000 
    116. 

  116.  52 4019      1162     1170.8  wm-rh-parsorbitalis               89.2496     7.7319    71.0000   109.0000    38.0000 
    117. 

  117.  53 4020      3409     3383.6  wm-rh-parstriangularis            96.3596     8.1057    72.0000   116.0000    44.0000 
    118. 

  118.  54 4021      2863     2776.9  wm-rh-pericalcarine               93.5058    13.2677     0.0000   116.0000   116.0000 
    119. 

  119.  55 4022      5959     6055.0  wm-rh-postcentral                 93.7112     8.0697    71.0000   121.0000    50.0000 
    120. 

  120.  56 4023      4003     3920.6  wm-rh-posteriorcingulate          91.8421     7.9126    58.0000   110.0000    52.0000 
    121. 

  121.  57 4024     12551    12715.9  wm-rh-precentral                  96.8224     7.4495    71.0000   131.0000    60.0000 
    122. 

  122.  58 4025      8216     8172.4  wm-rh-precuneus                   97.7098     8.8549    68.0000   121.0000    53.0000 
    123. 

  123.  59 4026      1749     1708.4  wm-rh-rostralanteriorcingulate    96.4443     9.5907    69.0000   114.0000    45.0000 
    124. 

  124.  60 4027     12605    12600.6  wm-rh-rostralmiddlefrontal        94.7168     9.0182    64.0000   117.0000    53.0000 
    125. 

  125.  61 4028     15803    15947.0  wm-rh-superiorfrontal             95.6430     7.6787    72.0000   118.0000    46.0000 
    126. 

  126.  62 4029     11033    11059.6  wm-rh-superiorparietal            97.7142     8.5862    73.0000   123.0000    50.0000 
    127. 

  127.  63 4030      5445     5798.8  wm-rh-superiortemporal            95.7513     8.9539    69.0000   126.0000    57.0000 
    128. 

  128.  64 4031      5744     5832.2  wm-rh-supramarginal               94.4723     8.9805    69.0000   116.0000    47.0000 
    129. 

  129.  65 4032       348      360.5  wm-rh-frontalpole                 90.6466     8.2768    74.0000   108.0000    34.0000 
    130. 

  130.  66 4033       520      561.3  wm-rh-temporalpole                82.0231     6.7258    67.0000   104.0000    37.0000 
    131. 

  131.  67 4034       495      491.2  wm-rh-transversetemporal          96.8404     7.0379    81.0000   114.0000    33.0000 
    132. 

  132.  68 4035      8535     8553.7  wm-rh-insula                      92.9531     9.1237    51.0000   115.0000    64.0000 
    133. 

  133.  69 5001     27479    27442.7  Left-UnsegmentedWhiteMatter       98.2171     9.5474    22.0000   120.0000    98.0000 
    134. 

  134.  70 5002     26707    26546.9  Right-UnsegmentedWhiteMatter      97.1921     8.4403    22.0000   123.0000   101.0000 
    135.