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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050319
- # sysname Linux
- # hostname tars-623
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050319
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1150047.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1128892.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1128109.655070, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 16246.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 262171.511275, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 261240.360122, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 523411.871397, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 204631.537490, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 203802.246184, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 408433.783673, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 58273.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 692936.871397, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1009956.655070, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 993710.655070, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 990791.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1534180.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.745461, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.994456, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 83, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 69, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 152, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1542732.560362, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 06:35:21
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 23:58:28
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 23:58:28
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 6222 6511.4 Left-Lateral-Ventricle 34.5207 13.3803 7.0000 90.0000 83.0000
- 2 5 160 194.2 Left-Inf-Lat-Vent 48.3563 12.3509 20.0000 82.0000 62.0000
- 3 7 13941 14729.0 Left-Cerebellum-White-Matter 80.2946 6.1380 29.0000 107.0000 78.0000
- 4 8 54528 54238.0 Left-Cerebellum-Cortex 61.6464 10.5636 0.0000 140.0000 140.0000
- 5 10 7791 7441.9 Left-Thalamus-Proper 82.0721 8.0219 35.0000 106.0000 71.0000
- 6 11 3743 3698.9 Left-Caudate 75.6030 7.2641 50.0000 95.0000 45.0000
- 7 12 5055 5085.4 Left-Putamen 79.9693 5.6363 47.0000 101.0000 54.0000
- 8 13 1934 1779.0 Left-Pallidum 88.6660 5.1002 65.0000 104.0000 39.0000
- 9 14 1385 1361.9 3rd-Ventricle 34.8809 14.7041 5.0000 79.0000 74.0000
- 10 15 2444 2493.0 4th-Ventricle 20.2320 14.6197 0.0000 68.0000 68.0000
- 11 16 21311 21352.9 Brain-Stem 82.5356 10.6565 0.0000 181.0000 181.0000
- 12 17 3642 3474.8 Left-Hippocampus 66.7317 8.0079 24.0000 95.0000 71.0000
- 13 18 1853 1795.3 Left-Amygdala 71.5629 6.5170 45.0000 95.0000 50.0000
- 14 24 1080 1038.0 CSF 46.9556 11.0986 20.0000 94.0000 74.0000
- 15 26 889 879.7 Left-Accumbens-area 70.2430 5.0976 41.0000 88.0000 47.0000
- 16 28 4613 4475.6 Left-VentralDC 85.6297 10.5865 33.0000 114.0000 81.0000
- 17 30 18 32.5 Left-vessel 57.0000 7.6158 42.0000 70.0000 28.0000
- 18 31 372 324.9 Left-choroid-plexus 50.6613 11.6718 21.0000 80.0000 59.0000
- 19 43 8877 9097.8 Right-Lateral-Ventricle 33.4808 13.0396 7.0000 86.0000 79.0000
- 20 44 195 213.6 Right-Inf-Lat-Vent 50.2308 12.8958 15.0000 78.0000 63.0000
- 21 46 12763 13602.3 Right-Cerebellum-White-Matter 78.7182 6.0441 19.0000 99.0000 80.0000
- 22 47 55007 54834.5 Right-Cerebellum-Cortex 62.8548 10.3911 0.0000 110.0000 110.0000
- 23 49 7153 6928.7 Right-Thalamus-Proper 81.6548 8.5529 29.0000 103.0000 74.0000
- 24 50 3901 3886.5 Right-Caudate 74.5611 8.0285 42.0000 95.0000 53.0000
- 25 51 4923 5016.6 Right-Putamen 79.6933 5.6023 53.0000 96.0000 43.0000
- 26 52 1599 1483.2 Right-Pallidum 89.8286 4.1309 77.0000 104.0000 27.0000
- 27 53 3876 3700.9 Right-Hippocampus 67.0098 8.8905 17.0000 97.0000 80.0000
- 28 54 2029 1972.9 Right-Amygdala 71.0399 7.4626 40.0000 94.0000 54.0000
- 29 58 787 753.9 Right-Accumbens-area 71.1321 4.8344 43.0000 90.0000 47.0000
- 30 60 4526 4400.7 Right-VentralDC 86.0656 10.8378 28.0000 117.0000 89.0000
- 31 62 17 32.9 Right-vessel 60.7647 3.9136 56.0000 69.0000 13.0000
- 32 63 469 387.8 Right-choroid-plexus 49.5501 11.9429 12.0000 77.0000 65.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1280 1211.1 WM-hypointensities 66.3109 14.3640 12.0000 102.0000 90.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 162 148.5 Optic-Chiasm 80.6914 22.1071 22.0000 122.0000 100.0000
- 41 251 933 793.8 CC_Posterior 95.9410 20.7375 37.0000 122.0000 85.0000
- 42 252 648 584.5 CC_Mid_Posterior 89.1389 17.8705 28.0000 116.0000 88.0000
- 43 253 594 525.4 CC_Central 88.5404 19.4335 32.0000 116.0000 84.0000
- 44 254 607 536.7 CC_Mid_Anterior 87.5618 18.1047 40.0000 118.0000 78.0000
- 45 255 641 597.9 CC_Anterior 90.1778 12.3789 43.0000 111.0000 68.0000
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