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0050310
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050310 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-948
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050310
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8440.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 228360.675159, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 229233.873044, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 457594.548203, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1622526.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1581221.218652, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 08:49:57 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 23:54:23 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 23:54:23 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2391     2334.7  wm-lh-bankssts                   101.4467     8.1282    77.0000   123.0000    46.0000 
    66. 

  66.   2 3002      3105     2997.3  wm-lh-caudalanteriorcingulate     95.8406     7.9827    58.0000   113.0000    55.0000 
    67. 

  67.   3 3003      5662     5645.3  wm-lh-caudalmiddlefrontal         96.7271     7.8707    74.0000   118.0000    44.0000 
    68. 

  68.   4 3005      2520     2450.6  wm-lh-cuneus                      99.0679    11.2645    66.0000   128.0000    62.0000 
    69. 

  69.   5 3006       853      877.6  wm-lh-entorhinal                  88.2040    10.1305    67.0000   119.0000    52.0000 
    70. 

  70.   6 3007      7096     7048.7  wm-lh-fusiform                    91.3182     9.8770    66.0000   121.0000    55.0000 
    71. 

  71.   7 3008     11222    11395.4  wm-lh-inferiorparietal            99.5990     9.4964    72.0000   127.0000    55.0000 
    72. 

  72.   8 3009      7283     7439.1  wm-lh-inferiortemporal            93.9827     9.6542    70.0000   123.0000    53.0000 
    73. 

  73.   9 3010      3813     3785.9  wm-lh-isthmuscingulate            95.3808    10.5518    45.0000   113.0000    68.0000 
    74. 

  74.  10 3011      9200     9355.6  wm-lh-lateraloccipital            94.1708     9.5811    63.0000   123.0000    60.0000 
    75. 

  75.  11 3012      6676     6583.9  wm-lh-lateralorbitofrontal        94.1711    10.3746    53.0000   117.0000    64.0000 
    76. 

  76.  12 3013      6057     5862.5  wm-lh-lingual                     87.2721     9.4475    46.0000   113.0000    67.0000 
    77. 

  77.  13 3014      3930     3856.8  wm-lh-medialorbitofrontal         92.5552    11.4414    28.0000   121.0000    93.0000 
    78. 

  78.  14 3015      5661     5895.8  wm-lh-middletemporal              94.8433     9.1228    70.0000   125.0000    55.0000 
    79. 

  79.  15 3016      1372     1430.3  wm-lh-parahippocampal             82.0496     6.6254    63.0000   102.0000    39.0000 
    80. 

  80.  16 3017      5071     4977.7  wm-lh-paracentral                 94.4526     7.9732    71.0000   113.0000    42.0000 
    81. 

  81.  17 3018      4262     4330.9  wm-lh-parsopercularis             97.6295     8.4503    74.0000   118.0000    44.0000 
    82. 

  82.  18 3019       997     1024.8  wm-lh-parsorbitalis               93.0532    10.5594    71.0000   121.0000    50.0000 
    83. 

  83.  19 3020      3777     3776.4  wm-lh-parstriangularis            98.8975     8.2408    74.0000   121.0000    47.0000 
    84. 

  84.  20 3021      4326     4052.8  wm-lh-pericalcarine               95.2668     9.3949    69.0000   122.0000    53.0000 
    85. 

  85.  21 3022      7561     7883.8  wm-lh-postcentral                 97.1517     8.8704    75.0000   127.0000    52.0000 
    86. 

  86.  22 3023      5419     5348.9  wm-lh-posteriorcingulate          92.7345     9.0581    46.0000   114.0000    68.0000 
    87. 

  87.  23 3024     11828    11877.6  wm-lh-precentral                  97.7346     8.5565    71.0000   123.0000    52.0000 
    88. 

  88.  24 3025      9122     8902.4  wm-lh-precuneus                   95.8874    10.2035    45.0000   118.0000    73.0000 
    89. 

  89.  25 3026      2715     2637.9  wm-lh-rostralanteriorcingulate    97.0847    11.1268    21.0000   116.0000    95.0000 
    90. 

  90.  26 3027     13923    13981.6  wm-lh-rostralmiddlefrontal        97.4414     9.3270    68.0000   123.0000    55.0000 
    91. 

  91.  27 3028     16556    16633.2  wm-lh-superiorfrontal             96.3119     9.6780    68.0000   128.0000    60.0000 
    92. 

  92.  28 3029     12178    12410.4  wm-lh-superiorparietal            96.9997     8.9890    65.0000   123.0000    58.0000 
    93. 

  93.  29 3030      7827     8083.1  wm-lh-superiortemporal            98.3299     9.0704    71.0000   128.0000    57.0000 
    94. 

  94.  30 3031     10433    10626.2  wm-lh-supramarginal              100.6748     8.6524    76.0000   130.0000    54.0000 
    95. 

  95.  31 3032       273      296.6  wm-lh-frontalpole                 95.1429     8.7790    80.0000   114.0000    34.0000 
    96. 

  96.  32 3033       756      796.9  wm-lh-temporalpole                88.2963     8.4419    71.0000   116.0000    45.0000 
    97. 

  97.  33 3034       710      664.2  wm-lh-transversetemporal          91.7451     7.6585    75.0000   114.0000    39.0000 
    98. 

  98.  34 3035      9860     9770.7  wm-lh-insula                      91.2712     9.7974    53.0000   114.0000    61.0000 
    99. 

  99.  35 4001      3307     3337.0  wm-rh-bankssts                    98.9371     7.3715    75.0000   118.0000    43.0000 
    100. 

  100.  36 4002      2474     2396.9  wm-rh-caudalanteriorcingulate     94.2704     8.5566    64.0000   113.0000    49.0000 
    101. 

  101.  37 4003      7329     7431.4  wm-rh-caudalmiddlefrontal         98.7588     7.8172    71.0000   121.0000    50.0000 
    102. 

  102.  38 4005      2547     2476.6  wm-rh-cuneus                      95.2941    11.6921    69.0000   123.0000    54.0000 
    103. 

  103.  39 4006       716      734.5  wm-rh-entorhinal                  84.5168     8.0810    59.0000   113.0000    54.0000 
    104. 

  104.  40 4007      6539     6414.5  wm-rh-fusiform                    89.1464    10.0203    64.0000   125.0000    61.0000 
    105. 

  105.  41 4008     15079    15218.0  wm-rh-inferiorparietal            97.6129     8.8109    71.0000   129.0000    58.0000 
    106. 

  106.  42 4009      5921     6054.1  wm-rh-inferiortemporal            90.8928     9.3879    63.0000   126.0000    63.0000 
    107. 

  107.  43 4010      3190     3126.2  wm-rh-isthmuscingulate            94.4332     9.1117    54.0000   113.0000    59.0000 
    108. 

  108.  44 4011      8059     8189.3  wm-rh-lateraloccipital            91.6635     8.9321    68.0000   116.0000    48.0000 
    109. 

  109.  45 4012      7442     7276.0  wm-rh-lateralorbitofrontal        93.5857    11.4096    45.0000   117.0000    72.0000 
    110. 

  110.  46 4013      6521     6332.3  wm-rh-lingual                     86.6849     9.7703    33.0000   113.0000    80.0000 
    111. 

  111.  47 4014      4161     4051.7  wm-rh-medialorbitofrontal         94.4223    11.3909    48.0000   118.0000    70.0000 
    112. 

  112.  48 4015      7120     7326.2  wm-rh-middletemporal              90.9725     8.6587    63.0000   119.0000    56.0000 
    113. 

  113.  49 4016      1454     1466.2  wm-rh-parahippocampal             81.4443     7.6226    61.0000   105.0000    44.0000 
    114. 

  114.  50 4017      5541     5442.2  wm-rh-paracentral                 93.7454     7.8624    70.0000   111.0000    41.0000 
    115. 

  115.  51 4018      4059     4012.2  wm-rh-parsopercularis             98.3715     8.2090    74.0000   121.0000    47.0000 
    116. 

  116.  52 4019      1308     1305.8  wm-rh-parsorbitalis               97.2676    10.5813    76.0000   124.0000    48.0000 
    117. 

  117.  53 4020      3783     3831.8  wm-rh-parstriangularis            98.9368     9.0620    75.0000   122.0000    47.0000 
    118. 

  118.  54 4021      4264     3976.6  wm-rh-pericalcarine               92.5912     9.0413    68.0000   114.0000    46.0000 
    119. 

  119.  55 4022      7655     7900.2  wm-rh-postcentral                 96.6837     9.0040    71.0000   133.0000    62.0000 
    120. 

  120.  56 4023      4761     4671.1  wm-rh-posteriorcingulate          91.7080     8.5146    55.0000   109.0000    54.0000 
    121. 

  121.  57 4024     12566    12719.9  wm-rh-precentral                  98.1382     8.4455    70.0000   127.0000    57.0000 
    122. 

  122.  58 4025      9874     9711.1  wm-rh-precuneus                   95.3941     9.7265    42.0000   120.0000    78.0000 
    123. 

  123.  59 4026      2488     2380.8  wm-rh-rostralanteriorcingulate    98.1555     9.2835    32.0000   114.0000    82.0000 
    124. 

  124.  60 4027     13677    13850.0  wm-rh-rostralmiddlefrontal        99.5073     9.4915    73.0000   122.0000    49.0000 
    125. 

  125.  61 4028     15456    15481.1  wm-rh-superiorfrontal             96.2198     9.4118    70.0000   123.0000    53.0000 
    126. 

  126.  62 4029     10812    11154.7  wm-rh-superiorparietal            97.5678     9.1393    72.0000   124.0000    52.0000 
    127. 

  127.  63 4030      6059     6293.0  wm-rh-superiortemporal            95.6595     8.9512    66.0000   131.0000    65.0000 
    128. 

  128.  64 4031     10722    10936.9  wm-rh-supramarginal               99.3388     8.1458    74.0000   124.0000    50.0000 
    129. 

  129.  65 4032       405      400.5  wm-rh-frontalpole                 91.2790     8.6761    71.0000   112.0000    41.0000 
    130. 

  130.  66 4033       838      881.0  wm-rh-temporalpole                88.3974     9.0939    70.0000   117.0000    47.0000 
    131. 

  131.  67 4034       733      698.8  wm-rh-transversetemporal          93.3056     7.7704    70.0000   114.0000    44.0000 
    132. 

  132.  68 4035      8794     8758.9  wm-rh-insula                      90.0358     8.3287    41.0000   113.0000    72.0000 
    133. 

  133.  69 5001     22772    22667.3  Left-UnsegmentedWhiteMatter       95.9274    10.3105    22.0000   116.0000    94.0000 
    134. 

  134.  70 5002     21946    21775.5  Right-UnsegmentedWhiteMatter      95.0768     9.4930    25.0000   115.0000    90.0000 
    135.