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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050310 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-948
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050310
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1292045.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1280342.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1279476.165300, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 8440.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 309184.153374, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 309756.463723, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 618940.617096, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 228360.675159, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 229233.873044, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 457594.548203, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63002.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 797501.617096, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1151149.165300, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1142709.165300, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1140263.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1622526.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.817118, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.026122, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 86, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 100, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 186, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1581221.218652, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 08:44:57 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 23:54:23 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 23:54:23 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      3484     3850.9  Left-Lateral-Ventricle            37.2689    15.4431     4.0000    89.0000    85.0000 
    82. 

  82.   2   5       391      482.4  Left-Inf-Lat-Vent                 43.3836    14.6079     0.0000    77.0000    77.0000 
    83. 

  83.   3   7     12393    13090.5  Left-Cerebellum-White-Matter      83.3904     6.0437    35.0000   102.0000    67.0000 
    84. 

  84.   4   8     56430    56137.0  Left-Cerebellum-Cortex            62.3157     9.4967     0.0000   143.0000   143.0000 
    85. 

  85.   5  10      7956     7590.7  Left-Thalamus-Proper              80.2226     8.7111    43.0000   106.0000    63.0000 
    86. 

  86.   6  11      4010     3912.0  Left-Caudate                      70.9399     7.3500    38.0000    95.0000    57.0000 
    87. 

  87.   7  12      5050     4961.3  Left-Putamen                      77.8113     5.7358    56.0000   101.0000    45.0000 
    88. 

  88.   8  13      2486     2297.5  Left-Pallidum                     86.3701     6.9415    66.0000   105.0000    39.0000 
    89. 

  89.   9  14       608      689.9  3rd-Ventricle                     38.1299    13.5372     2.0000    63.0000    61.0000 
    90. 

  90.  10  15      1920     1934.0  4th-Ventricle                     20.0760    15.7396     0.0000    84.0000    84.0000 
    91. 

  91.  11  16     19575    19432.7  Brain-Stem                        82.6932    12.6736     0.0000   217.0000   217.0000 
    92. 

  92.  12  17      4795     4635.5  Left-Hippocampus                  63.5097     8.8934    15.0000   139.0000   124.0000 
    93. 

  93.  13  18      1571     1532.2  Left-Amygdala                     64.0350     6.8750    34.0000    88.0000    54.0000 
    94. 

  94.  14  24       735      822.5  CSF                               48.4476    11.1754    16.0000    76.0000    60.0000 
    95. 

  95.  15  26       622      626.7  Left-Accumbens-area               67.3553     4.5238    41.0000    83.0000    42.0000 
    96. 

  96.  16  28      4764     4507.6  Left-VentralDC                    84.8873    15.4538    14.0000   221.0000   207.0000 
    97. 

  97.  17  30         0        0.0  Left-vessel                        0.0000     0.0000     0.0000     0.0000     0.0000 
    98. 

  98.  18  31       441      389.9  Left-choroid-plexus               54.5079    11.6188    25.0000    81.0000    56.0000 
    99. 

  99.  19  43      2681     3006.2  Right-Lateral-Ventricle           40.5882    15.2257     3.0000    83.0000    80.0000 
    100. 

  100.  20  44       762      792.8  Right-Inf-Lat-Vent                29.4698    15.1672     0.0000    75.0000    75.0000 
    101. 

  101.  21  46     11984    12587.2  Right-Cerebellum-White-Matter     82.6681     5.8059    37.0000   103.0000    66.0000 
    102. 

  102.  22  47     58046    57804.7  Right-Cerebellum-Cortex           61.9766     9.8969     0.0000   181.0000   181.0000 
    103. 

  103.  23  49      8126     7752.7  Right-Thalamus-Proper             80.2997     8.5248    36.0000   136.0000   100.0000 
    104. 

  104.  24  50      4205     4140.2  Right-Caudate                     71.5898     7.0762    42.0000    93.0000    51.0000 
    105. 

  105.  25  51      5943     5796.8  Right-Putamen                     77.3863     5.6069    43.0000   100.0000    57.0000 
    106. 

  106.  26  52      1842     1671.0  Right-Pallidum                    89.9365     4.7603    67.0000   103.0000    36.0000 
    107. 

  107.  27  53      4538     4386.0  Right-Hippocampus                 62.4835    10.8112    11.0000   180.0000   169.0000 
    108. 

  108.  28  54      1862     1803.5  Right-Amygdala                    64.9683     8.1471    14.0000    99.0000    85.0000 
    109. 

  109.  29  58       664      692.3  Right-Accumbens-area              68.0693     4.7804    56.0000    92.0000    36.0000 
    110. 

  110.  30  60      4626     4330.5  Right-VentralDC                   83.4120    14.6715     0.0000   217.0000   217.0000 
    111. 

  111.  31  62         3       10.6  Right-vessel                      57.3333     2.0817    55.0000    59.0000     4.0000 
    112. 

  112.  32  63       681      620.0  Right-choroid-plexus              54.3377    11.4002    20.0000    77.0000    57.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1789     1552.0  WM-hypointensities                70.7658    10.5040    35.0000   100.0000    65.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       149      134.7  Optic-Chiasm                      72.2819    16.4986    24.0000   103.0000    79.0000 
    121. 

  121.  41 251      1014      945.3  CC_Posterior                      94.3481    15.7476    34.0000   113.0000    79.0000 
    122. 

  122.  42 252       537      450.9  CC_Mid_Posterior                  86.7076    15.2040    48.0000   108.0000    60.0000 
    123. 

  123.  43 253       703      626.3  CC_Central                        85.9929    13.8323    27.0000   111.0000    84.0000 
    124. 

  124.  44 254       625      552.3  CC_Mid_Anterior                   87.3280    13.7087    44.0000   110.0000    66.0000 
    125. 

  125.  45 255       984      899.1  CC_Anterior                       95.2947    13.4511    49.0000   159.0000   110.0000 
    126.