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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050285 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-921
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050285
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1196870.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1170081.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1169175.892664, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 22091.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 278248.105464, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 276865.332236, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 555113.437700, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 213030.328125, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 210490.126839, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 423520.454964, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 55505.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 722117.437700, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1060328.892664, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1038237.892664, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1034910.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1530328.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.791741, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.012326, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 119, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 118, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 237, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1511694.156736, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 08:40:38 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/08 00:02:56 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/08 00:02:56 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     13327    13529.5  Left-Lateral-Ventricle            27.2072    11.7965     0.0000    84.0000    84.0000 
    82. 

  82.   2   5       421      421.6  Left-Inf-Lat-Vent                 41.7957    15.9464     0.0000    83.0000    83.0000 
    83. 

  83.   3   7     12357    12926.5  Left-Cerebellum-White-Matter      80.3829     7.8017     0.0000   101.0000   101.0000 
    84. 

  84.   4   8     54099    53996.9  Left-Cerebellum-Cortex            58.2658    10.7115     0.0000   132.0000   132.0000 
    85. 

  85.   5  10      7545     7317.3  Left-Thalamus-Proper              79.5418     8.5381    34.0000   103.0000    69.0000 
    86. 

  86.   6  11      2985     2911.0  Left-Caudate                      72.8446     8.2818    30.0000   104.0000    74.0000 
    87. 

  87.   7  12      4786     4780.1  Left-Putamen                      78.0117     6.4506    39.0000   103.0000    64.0000 
    88. 

  88.   8  13      1406     1326.9  Left-Pallidum                     90.7219     5.5451    74.0000   107.0000    33.0000 
    89. 

  89.   9  14      1163     1197.7  3rd-Ventricle                     31.9794    13.7313     0.0000    65.0000    65.0000 
    90. 

  90.  10  15      2764     2832.4  4th-Ventricle                     19.3242    12.6913     0.0000    66.0000    66.0000 
    91. 

  91.  11  16     17053    17117.3  Brain-Stem                        80.8165    10.2376     3.0000   127.0000   124.0000 
    92. 

  92.  12  17      4527     4271.0  Left-Hippocampus                  64.5880    11.0583     9.0000   104.0000    95.0000 
    93. 

  93.  13  18      1927     1936.6  Left-Amygdala                     69.0374     7.5952    34.0000    97.0000    63.0000 
    94. 

  94.  14  24       771      738.3  CSF                               47.5953    12.7629    15.0000    93.0000    78.0000 
    95. 

  95.  15  26       635      621.2  Left-Accumbens-area               65.7701     7.1871    21.0000    84.0000    63.0000 
    96. 

  96.  16  28      4203     4035.6  Left-VentralDC                    82.6619    10.5362     0.0000   116.0000   116.0000 
    97. 

  97.  17  30         7       10.2  Left-vessel                       59.2857     6.7999    49.0000    66.0000    17.0000 
    98. 

  98.  18  31       448      374.6  Left-choroid-plexus               47.8661    11.6560    19.0000    84.0000    65.0000 
    99. 

  99.  19  43      7096     7259.1  Right-Lateral-Ventricle           30.4477    14.1408     0.0000    83.0000    83.0000 
    100. 

  100.  20  44       291      350.9  Right-Inf-Lat-Vent                48.9485    12.0993    20.0000    79.0000    59.0000 
    101. 

  101.  21  46     11167    11648.7  Right-Cerebellum-White-Matter     78.1907     6.9505    24.0000   101.0000    77.0000 
    102. 

  102.  22  47     55619    55786.0  Right-Cerebellum-Cortex           57.8573     9.6161     0.0000   108.0000   108.0000 
    103. 

  103.  23  49      7677     7409.7  Right-Thalamus-Proper             80.0767     8.5570    21.0000   105.0000    84.0000 
    104. 

  104.  24  50      3165     3035.4  Right-Caudate                     73.8430     8.1741    41.0000    95.0000    54.0000 
    105. 

  105.  25  51      4716     4671.4  Right-Putamen                     77.8352     6.3031    42.0000    97.0000    55.0000 
    106. 

  106.  26  52      1479     1392.5  Right-Pallidum                    90.3239     5.3653    68.0000   111.0000    43.0000 
    107. 

  107.  27  53      4209     4040.9  Right-Hippocampus                 64.8943     7.8747    25.0000    94.0000    69.0000 
    108. 

  108.  28  54      2042     2070.0  Right-Amygdala                    68.4378     6.0002    38.0000    88.0000    50.0000 
    109. 

  109.  29  58       478      438.6  Right-Accumbens-area              70.4979     5.3532    48.0000    88.0000    40.0000 
    110. 

  110.  30  60      3783     3562.5  Right-VentralDC                   82.5654    11.4925    12.0000   117.0000   105.0000 
    111. 

  111.  31  62         7       12.8  Right-vessel                      55.2857     8.4993    40.0000    63.0000    23.0000 
    112. 

  112.  32  63       541      488.4  Right-choroid-plexus              50.8447    11.5034    19.0000    78.0000    59.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      2612     2240.2  WM-hypointensities                68.1600    15.2830     2.0000   119.0000   117.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         2        2.0  non-WM-hypointensities            56.0000     0.0000    56.0000    56.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       155      157.5  Optic-Chiasm                      78.2968    20.8869    24.0000   122.0000    98.0000 
    121. 

  121.  41 251       921      810.4  CC_Posterior                      90.2736    20.0244    43.0000   127.0000    84.0000 
    122. 

  122.  42 252       641      564.3  CC_Mid_Posterior                  89.9704    21.9509    20.0000   130.0000   110.0000 
    123. 

  123.  43 253       494      425.8  CC_Central                        85.8603    20.7288     7.0000   121.0000   114.0000 
    124. 

  124.  44 254       348      294.1  CC_Mid_Anterior                   88.3046    20.2174    21.0000   120.0000    99.0000 
    125. 

  125.  45 255       695      644.7  CC_Anterior                       96.1151    19.3837     6.0000   132.0000   126.0000 
    126.