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0050251
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050251 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-534
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050251
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 15724.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 263516.691705, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 264477.320323, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 527994.012028, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1910101.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1832738.574774, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 04:23:48 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 20:22:11 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 20:22:11 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3250     3293.1  wm-lh-bankssts                   101.5175     6.1094    75.0000   115.0000    40.0000 
    66. 

  66.   2 3002      3011     3042.6  wm-lh-caudalanteriorcingulate    103.3949     5.7764    74.0000   119.0000    45.0000 
    67. 

  67.   3 3003      9192     9264.9  wm-lh-caudalmiddlefrontal         99.5998     6.9176    75.0000   115.0000    40.0000 
    68. 

  68.   4 3005      2969     3134.3  wm-lh-cuneus                      94.7632     6.3421    75.0000   108.0000    33.0000 
    69. 

  69.   5 3006       919      933.5  wm-lh-entorhinal                  84.0174     7.0363    67.0000   108.0000    41.0000 
    70. 

  70.   6 3007      7452     7588.3  wm-lh-fusiform                    91.3945     6.9940    63.0000   116.0000    53.0000 
    71. 

  71.   7 3008     12064    12343.2  wm-lh-inferiorparietal           102.5242     6.6609    78.0000   119.0000    41.0000 
    72. 

  72.   8 3009      7897     8020.4  wm-lh-inferiortemporal            93.4935     7.9301    71.0000   129.0000    58.0000 
    73. 

  73.   9 3010      4215     4252.0  wm-lh-isthmuscingulate            99.6311     6.9322    28.0000   113.0000    85.0000 
    74. 

  74.  10 3011      9112     9511.4  wm-lh-lateraloccipital            93.6822     7.5308    70.0000   114.0000    44.0000 
    75. 

  75.  11 3012      6870     6837.5  wm-lh-lateralorbitofrontal        96.4342     7.4603    63.0000   118.0000    55.0000 
    76. 

  76.  12 3013      5287     5334.6  wm-lh-lingual                     89.2366     6.6223    61.0000   107.0000    46.0000 
    77. 

  77.  13 3014      3326     3353.0  wm-lh-medialorbitofrontal         97.7171     7.8901    58.0000   117.0000    59.0000 
    78. 

  78.  14 3015      6820     7075.1  wm-lh-middletemporal              94.3213     8.4399    69.0000   113.0000    44.0000 
    79. 

  79.  15 3016      1679     1727.0  wm-lh-parahippocampal             86.5331     5.9420    70.0000   103.0000    33.0000 
    80. 

  80.  16 3017      4833     4925.2  wm-lh-paracentral                 97.8651     5.2076    77.0000   111.0000    34.0000 
    81. 

  81.  17 3018      3681     3694.3  wm-lh-parsopercularis             98.7675     7.3629    76.0000   114.0000    38.0000 
    82. 

  82.  18 3019       808      825.1  wm-lh-parsorbitalis               95.0173     7.1902    75.0000   110.0000    35.0000 
    83. 

  83.  19 3020      2756     2771.8  wm-lh-parstriangularis            98.2449     6.8403    77.0000   113.0000    36.0000 
    84. 

  84.  20 3021      2726     2637.1  wm-lh-pericalcarine               90.5686     6.2066    71.0000   110.0000    39.0000 
    85. 

  85.  21 3022      8753     8958.4  wm-lh-postcentral                 96.9628     7.7085    74.0000   121.0000    47.0000 
    86. 

  86.  22 3023      5505     5493.6  wm-lh-posteriorcingulate         100.8496     6.1326    52.0000   114.0000    62.0000 
    87. 

  87.  23 3024     15832    15977.8  wm-lh-precentral                  98.0627     6.8037    73.0000   115.0000    42.0000 
    88. 

  88.  24 3025     12435    12549.1  wm-lh-precuneus                   99.1140     6.6289    47.0000   115.0000    68.0000 
    89. 

  89.  25 3026      3283     3198.3  wm-lh-rostralanteriorcingulate   100.3399     9.9199    43.0000   124.0000    81.0000 
    90. 

  90.  26 3027     14105    14183.3  wm-lh-rostralmiddlefrontal        98.0532     7.3599    74.0000   114.0000    40.0000 
    91. 

  91.  27 3028     22664    22862.1  wm-lh-superiorfrontal             97.6975     7.1406    63.0000   114.0000    51.0000 
    92. 

  92.  28 3029     12568    12871.0  wm-lh-superiorparietal            99.5099     6.1908    75.0000   117.0000    42.0000 
    93. 

  93.  29 3030      9288     9518.4  wm-lh-superiortemporal            96.4118     8.0517    63.0000   120.0000    57.0000 
    94. 

  94.  30 3031     10975    11152.8  wm-lh-supramarginal              102.8897     7.6281    75.0000   118.0000    43.0000 
    95. 

  95.  31 3032       332      341.7  wm-lh-frontalpole                 93.8855     7.9099    76.0000   113.0000    37.0000 
    96. 

  96.  32 3033       626      659.9  wm-lh-temporalpole                85.0990     7.9430    65.0000   115.0000    50.0000 
    97. 

  97.  33 3034       797      799.2  wm-lh-transversetemporal          96.4705     6.0721    77.0000   110.0000    33.0000 
    98. 

  98.  34 3035     11842    11668.3  wm-lh-insula                      92.8120     9.1651    46.0000   119.0000    73.0000 
    99. 

  99.  35 4001      3214     3213.5  wm-rh-bankssts                    99.8012     5.5130    76.0000   111.0000    35.0000 
    100. 

  100.  36 4002      3348     3291.0  wm-rh-caudalanteriorcingulate    101.5072     7.6761    70.0000   117.0000    47.0000 
    101. 

  101.  37 4003      6909     6983.4  wm-rh-caudalmiddlefrontal         97.8249     6.5349    75.0000   110.0000    35.0000 
    102. 

  102.  38 4005      2605     2700.5  wm-rh-cuneus                      95.3716     7.3552    73.0000   113.0000    40.0000 
    103. 

  103.  39 4006       815      823.6  wm-rh-entorhinal                  84.3055     7.8657    69.0000   111.0000    42.0000 
    104. 

  104.  40 4007      7323     7451.3  wm-rh-fusiform                    92.4700     7.2891    67.0000   118.0000    51.0000 
    105. 

  105.  41 4008     14167    14507.4  wm-rh-inferiorparietal            99.6870     6.5301    77.0000   117.0000    40.0000 
    106. 

  106.  42 4009      6424     6572.0  wm-rh-inferiortemporal            92.7651     7.9654    68.0000   118.0000    50.0000 
    107. 

  107.  43 4010      4226     4322.7  wm-rh-isthmuscingulate           102.7295     6.9250    41.0000   117.0000    76.0000 
    108. 

  108.  44 4011      9633    10013.8  wm-rh-lateraloccipital            91.3234     6.9115    68.0000   112.0000    44.0000 
    109. 

  109.  45 4012      8689     8672.6  wm-rh-lateralorbitofrontal        95.4803     9.0588    40.0000   120.0000    80.0000 
    110. 

  110.  46 4013      5651     5763.6  wm-rh-lingual                     91.7546     7.3808    47.0000   108.0000    61.0000 
    111. 

  111.  47 4014      3714     3715.4  wm-rh-medialorbitofrontal         97.1284     8.9061    48.0000   114.0000    66.0000 
    112. 

  112.  48 4015      6605     6809.0  wm-rh-middletemporal              92.2768     7.9082    70.0000   109.0000    39.0000 
    113. 

  113.  49 4016      1610     1656.0  wm-rh-parahippocampal             89.6870     6.3492    59.0000   105.0000    46.0000 
    114. 

  114.  50 4017      5721     5823.0  wm-rh-paracentral                100.1923     5.7685    78.0000   113.0000    35.0000 
    115. 

  115.  51 4018      3615     3623.3  wm-rh-parsopercularis             99.0592     6.5289    73.0000   112.0000    39.0000 
    116. 

  116.  52 4019      1187     1231.9  wm-rh-parsorbitalis               95.3395     7.1275    76.0000   110.0000    34.0000 
    117. 

  117.  53 4020      3609     3635.6  wm-rh-parstriangularis            99.7368     6.9865    77.0000   114.0000    37.0000 
    118. 

  118.  54 4021      2010     1917.6  wm-rh-pericalcarine               91.6577     6.4072    70.0000   107.0000    37.0000 
    119. 

  119.  55 4022      9619     9842.1  wm-rh-postcentral                 96.9092     6.8907    75.0000   114.0000    39.0000 
    120. 

  120.  56 4023      5842     5851.3  wm-rh-posteriorcingulate         102.3463     6.3493    53.0000   115.0000    62.0000 
    121. 

  121.  57 4024     15172    15349.7  wm-rh-precentral                  97.6037     6.1464    70.0000   111.0000    41.0000 
    122. 

  122.  58 4025     11487    11644.9  wm-rh-precuneus                  100.0785     6.5435    44.0000   116.0000    72.0000 
    123. 

  123.  59 4026      2357     2254.6  wm-rh-rostralanteriorcingulate    97.1676     8.6628    47.0000   121.0000    74.0000 
    124. 

  124.  60 4027     16354    16438.1  wm-rh-rostralmiddlefrontal        99.1175     7.2055    72.0000   114.0000    42.0000 
    125. 

  125.  61 4028     19940    20058.3  wm-rh-superiorfrontal             97.5258     7.0432    71.0000   114.0000    43.0000 
    126. 

  126.  62 4029     13573    13864.8  wm-rh-superiorparietal            99.1662     6.5876    71.0000   113.0000    42.0000 
    127. 

  127.  63 4030      8112     8417.3  wm-rh-superiortemporal            95.0817     7.2355    72.0000   120.0000    48.0000 
    128. 

  128.  64 4031     11627    11785.7  wm-rh-supramarginal              101.3335     7.1828    76.0000   116.0000    40.0000 
    129. 

  129.  65 4032       470      473.3  wm-rh-frontalpole                 95.0489     8.4838    77.0000   112.0000    35.0000 
    130. 

  130.  66 4033       654      665.5  wm-rh-temporalpole                84.3242     7.9222    67.0000   116.0000    49.0000 
    131. 

  131.  67 4034       516      490.6  wm-rh-transversetemporal          94.8624     6.1697    76.0000   112.0000    36.0000 
    132. 

  132.  68 4035     10715    10496.6  wm-rh-insula                      93.1162     8.1508    55.0000   112.0000    57.0000 
    133. 

  133.  69 5001     34035    33729.0  Left-UnsegmentedWhiteMatter       98.7470     8.1721    19.0000   117.0000    98.0000 
    134. 

  134.  70 5002     35584    35396.4  Right-UnsegmentedWhiteMatter      99.0087     8.2117    22.0000   119.0000    97.0000 
    135.