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0050233
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050233 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-112
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050233
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1486121.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1463419.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1463411.328791, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 19634.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 330726.091464, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 331249.619712, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 661975.711176, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 279088.312386, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 277572.305229, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 556660.617615, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 67666.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 872784.711176, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1309045.328791, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1289411.328791, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1286273.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 2050661.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.925005, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.276391, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 44, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 30, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 74, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1606609.257188, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 04:59:45 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 19:56:05 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 19:56:05 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     11283    11544.4  Left-Lateral-Ventricle            29.7774    11.9140     6.0000    86.0000    80.0000 
    82. 

  82.   2   5       303      331.6  Left-Inf-Lat-Vent                 42.7624    12.5833    10.0000    77.0000    67.0000 
    83. 

  83.   3   7     17431    17707.6  Left-Cerebellum-White-Matter      86.6340     6.6522     7.0000   108.0000   101.0000 
    84. 

  84.   4   8     71659    71824.1  Left-Cerebellum-Cortex            66.4306    10.5783    10.0000   117.0000   107.0000 
    85. 

  85.   5  10      9270     9046.7  Left-Thalamus-Proper              89.4905     8.8160    20.0000   114.0000    94.0000 
    86. 

  86.   6  11      4005     4004.7  Left-Caudate                      80.5099     6.8960    48.0000   105.0000    57.0000 
    87. 

  87.   7  12      6217     6263.7  Left-Putamen                      85.0014     5.5220    24.0000   104.0000    80.0000 
    88. 

  88.   8  13      2264     2200.1  Left-Pallidum                     95.5464     5.0562    61.0000   116.0000    55.0000 
    89. 

  89.   9  14       740      744.4  3rd-Ventricle                     43.3446    14.4153    16.0000    88.0000    72.0000 
    90. 

  90.  10  15      1352     1463.9  4th-Ventricle                     35.1827    11.9362     3.0000    87.0000    84.0000 
    91. 

  91.  11  16     22445    22187.3  Brain-Stem                        86.0747     9.5781    13.0000   135.0000   122.0000 
    92. 

  92.  12  17      4980     4952.9  Left-Hippocampus                  71.5741     8.2591    19.0000   110.0000    91.0000 
    93. 

  93.  13  18      2110     2090.6  Left-Amygdala                     70.9654     6.2575    42.0000    92.0000    50.0000 
    94. 

  94.  14  24       976      996.5  CSF                               53.7213    15.5740    20.0000   115.0000    95.0000 
    95. 

  95.  15  26       519      520.7  Left-Accumbens-area               78.3699     4.8881    54.0000    92.0000    38.0000 
    96. 

  96.  16  28      4447     4257.4  Left-VentralDC                    90.1700     9.5840    30.0000   115.0000    85.0000 
    97. 

  97.  17  30        46       54.0  Left-vessel                       52.6087    12.4891    25.0000    70.0000    45.0000 
    98. 

  98.  18  31       575      537.5  Left-choroid-plexus               50.2417    13.0683    21.0000    82.0000    61.0000 
    99. 

  99.  19  43      6627     6733.9  Right-Lateral-Ventricle           33.3896    13.8432    10.0000    98.0000    88.0000 
    100. 

  100.  20  44       661      682.0  Right-Inf-Lat-Vent                35.4569    14.0703    12.0000    78.0000    66.0000 
    101. 

  101.  21  46     16474    16777.1  Right-Cerebellum-White-Matter     86.5169     6.3476    30.0000   103.0000    73.0000 
    102. 

  102.  22  47     70281    70500.7  Right-Cerebellum-Cortex           66.4292    10.6095    10.0000   128.0000   118.0000 
    103. 

  103.  23  49      8625     8375.2  Right-Thalamus-Proper             90.0470     8.2173    30.0000   112.0000    82.0000 
    104. 

  104.  24  50      4148     4086.8  Right-Caudate                     80.7367     6.7497    45.0000   104.0000    59.0000 
    105. 

  105.  25  51      6184     6173.2  Right-Putamen                     85.5927     5.5423    43.0000   107.0000    64.0000 
    106. 

  106.  26  52      2240     2182.5  Right-Pallidum                    95.7335     4.6776    54.0000   114.0000    60.0000 
    107. 

  107.  27  53      5214     5143.5  Right-Hippocampus                 70.3602     7.4512    30.0000   102.0000    72.0000 
    108. 

  108.  28  54      2232     2151.1  Right-Amygdala                    68.5081     7.3300    31.0000    99.0000    68.0000 
    109. 

  109.  29  58       604      582.4  Right-Accumbens-area              79.6921     5.3281    63.0000    98.0000    35.0000 
    110. 

  110.  30  60      4635     4454.1  Right-VentralDC                   89.9625     9.8135    18.0000   108.0000    90.0000 
    111. 

  111.  31  62        15       24.9  Right-vessel                      55.0667    10.0247    34.0000    69.0000    35.0000 
    112. 

  112.  32  63       512      474.7  Right-choroid-plexus              51.5000    12.6488    20.0000    81.0000    61.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       951      828.6  WM-hypointensities                70.6330    11.6256    19.0000   101.0000    82.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       103       90.6  Optic-Chiasm                      76.6214    16.7912    36.0000   115.0000    79.0000 
    121. 

  121.  41 251      1210     1125.8  CC_Posterior                      99.5603    15.3652    37.0000   117.0000    80.0000 
    122. 

  122.  42 252       713      635.4  CC_Mid_Posterior                  95.4544    16.1086    27.0000   122.0000    95.0000 
    123. 

  123.  43 253       921      810.2  CC_Central                        93.2172    16.4930    27.0000   119.0000    92.0000 
    124. 

  124.  44 254       986      857.5  CC_Mid_Anterior                   92.6227    18.0719    29.0000   133.0000   104.0000 
    125. 

  125.  45 255      1280     1215.7  CC_Anterior                      104.9664    17.6285    32.0000   148.0000   116.0000 
    126.