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0050205
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050205 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-581
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050205
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 13428.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 204445.725384, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 207698.856605, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 412144.581989, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1549917.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1495895.696408, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 06:01:15 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 19:35:43 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 19:35:43 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      2987     2965.2  wm-lh-bankssts                   103.2213     7.9578    75.0000   126.0000    51.0000 
    66. 

  66.   2 3002      2702     2599.3  wm-lh-caudalanteriorcingulate    100.3671    10.3195    63.0000   130.0000    67.0000 
    67. 

  67.   3 3003      6605     6573.9  wm-lh-caudalmiddlefrontal         97.8634     9.0987    63.0000   119.0000    56.0000 
    68. 

  68.   4 3005      2557     2561.6  wm-lh-cuneus                      92.2002    10.6754    62.0000   114.0000    52.0000 
    69. 

  69.   5 3006       856      935.4  wm-lh-entorhinal                  79.4696     8.0526    56.0000   102.0000    46.0000 
    70. 

  70.   6 3007      5814     5797.9  wm-lh-fusiform                    91.3839    10.7138    54.0000   117.0000    63.0000 
    71. 

  71.   7 3008      9005     9043.2  wm-lh-inferiorparietal            99.1350     9.4668    68.0000   122.0000    54.0000 
    72. 

  72.   8 3009      6095     6184.9  wm-lh-inferiortemporal            93.8866    10.7421    58.0000   123.0000    65.0000 
    73. 

  73.   9 3010      3916     3902.9  wm-lh-isthmuscingulate           101.7048    11.0734    34.0000   129.0000    95.0000 
    74. 

  74.  10 3011     10143    10337.3  wm-lh-lateraloccipital            93.2165    10.1900    59.0000   121.0000    62.0000 
    75. 

  75.  11 3012      6748     6622.5  wm-lh-lateralorbitofrontal        95.4484    11.9838    53.0000   119.0000    66.0000 
    76. 

  76.  12 3013      4744     4764.5  wm-lh-lingual                     88.0464    10.9782    41.0000   125.0000    84.0000 
    77. 

  77.  13 3014      3381     3222.1  wm-lh-medialorbitofrontal         91.3818    13.4160    34.0000   117.0000    83.0000 
    78. 

  78.  14 3015      5292     5368.3  wm-lh-middletemporal              95.6497    11.4543    58.0000   128.0000    70.0000 
    79. 

  79.  15 3016      1233     1318.4  wm-lh-parahippocampal             85.8037     8.7477    60.0000   109.0000    49.0000 
    80. 

  80.  16 3017      3576     3519.7  wm-lh-paracentral                 96.2947     8.6242    73.0000   115.0000    42.0000 
    81. 

  81.  17 3018      3174     3151.6  wm-lh-parsopercularis             96.7347    10.7608    62.0000   119.0000    57.0000 
    82. 

  82.  18 3019      1041     1023.6  wm-lh-parsorbitalis               90.0211    10.7139    63.0000   112.0000    49.0000 
    83. 

  83.  19 3020      2422     2386.1  wm-lh-parstriangularis            93.5987    10.7186    66.0000   116.0000    50.0000 
    84. 

  84.  20 3021      3505     3297.5  wm-lh-pericalcarine               88.9917    13.0823     3.0000   118.0000   115.0000 
    85. 

  85.  21 3022      5983     6204.0  wm-lh-postcentral                 96.6084     8.9327    67.0000   124.0000    57.0000 
    86. 

  86.  22 3023      4834     4735.1  wm-lh-posteriorcingulate          99.7011    10.3120    45.0000   125.0000    80.0000 
    87. 

  87.  23 3024     11858    11837.2  wm-lh-precentral                  97.0237     8.4718    67.0000   122.0000    55.0000 
    88. 

  88.  24 3025      8320     8256.7  wm-lh-precuneus                  100.3989     9.6793    34.0000   121.0000    87.0000 
    89. 

  89.  25 3026      2949     2870.5  wm-lh-rostralanteriorcingulate   102.6558    11.6178    57.0000   135.0000    78.0000 
    90. 

  90.  26 3027     12818    12709.8  wm-lh-rostralmiddlefrontal        97.9128    10.2163    66.0000   121.0000    55.0000 
    91. 

  91.  27 3028     15717    15572.7  wm-lh-superiorfrontal             94.6385    10.2112    63.0000   119.0000    56.0000 
    92. 

  92.  28 3029      8700     8772.8  wm-lh-superiorparietal            98.3180     8.7690    69.0000   121.0000    52.0000 
    93. 

  93.  29 3030      6210     6412.8  wm-lh-superiortemporal            95.6543    12.0124    56.0000   129.0000    73.0000 
    94. 

  94.  30 3031      7142     7105.3  wm-lh-supramarginal              101.3488     9.2497    72.0000   130.0000    58.0000 
    95. 

  95.  31 3032       304      284.6  wm-lh-frontalpole                 90.2730     9.0270    64.0000   114.0000    50.0000 
    96. 

  96.  32 3033       575      602.8  wm-lh-temporalpole                76.1426     7.9837    57.0000    98.0000    41.0000 
    97. 

  97.  33 3034       839      822.7  wm-lh-transversetemporal          99.0727     8.0238    76.0000   119.0000    43.0000 
    98. 

  98.  34 3035      8905     8702.1  wm-lh-insula                      91.5791    12.2717    25.0000   123.0000    98.0000 
    99. 

  99.  35 4001      2630     2643.2  wm-rh-bankssts                   101.5384     8.0063    72.0000   120.0000    48.0000 
    100. 

  100.  36 4002      2588     2501.7  wm-rh-caudalanteriorcingulate    105.0657    13.1278    42.0000   132.0000    90.0000 
    101. 

  101.  37 4003      6078     6042.0  wm-rh-caudalmiddlefrontal         97.4849     9.5773    70.0000   117.0000    47.0000 
    102. 

  102.  38 4005      2277     2261.0  wm-rh-cuneus                      91.7743     9.9868    65.0000   113.0000    48.0000 
    103. 

  103.  39 4006       860      910.6  wm-rh-entorhinal                  76.8977     8.1637    43.0000   100.0000    57.0000 
    104. 

  104.  40 4007      5892     5903.2  wm-rh-fusiform                    88.1288    10.4378    54.0000   115.0000    61.0000 
    105. 

  105.  41 4008      9703     9791.8  wm-rh-inferiorparietal            97.2278     9.5462    67.0000   121.0000    54.0000 
    106. 

  106.  42 4009      5789     5811.0  wm-rh-inferiortemporal            87.6870    11.3819    56.0000   114.0000    58.0000 
    107. 

  107.  43 4010      3190     3204.8  wm-rh-isthmuscingulate           103.9223     9.7828    22.0000   125.0000   103.0000 
    108. 

  108.  44 4011      9833    10079.8  wm-rh-lateraloccipital            92.0607     9.1897    65.0000   116.0000    51.0000 
    109. 

  109.  45 4012      7389     7224.8  wm-rh-lateralorbitofrontal        91.3558    12.7771    15.0000   118.0000   103.0000 
    110. 

  110.  46 4013      4787     4804.7  wm-rh-lingual                     89.1212    11.1564    48.0000   120.0000    72.0000 
    111. 

  111.  47 4014      3144     3141.9  wm-rh-medialorbitofrontal         94.0824     9.7453    60.0000   116.0000    56.0000 
    112. 

  112.  48 4015      5457     5505.0  wm-rh-middletemporal              90.4043    11.0600    58.0000   117.0000    59.0000 
    113. 

  113.  49 4016      1363     1435.0  wm-rh-parahippocampal             86.3698     7.7419    62.0000   105.0000    43.0000 
    114. 

  114.  50 4017      4661     4647.9  wm-rh-paracentral                 98.5679     7.3957    66.0000   121.0000    55.0000 
    115. 

  115.  51 4018      3385     3335.7  wm-rh-parsopercularis             98.3380    10.1269    66.0000   120.0000    54.0000 
    116. 

  116.  52 4019       932      888.3  wm-rh-parsorbitalis               89.1137    10.2150    66.0000   111.0000    45.0000 
    117. 

  117.  53 4020      3069     3071.2  wm-rh-parstriangularis            95.5754     9.8888    66.0000   121.0000    55.0000 
    118. 

  118.  54 4021      3669     3518.4  wm-rh-pericalcarine               90.0739    14.4435     1.0000   114.0000   113.0000 
    119. 

  119.  55 4022      6083     6317.0  wm-rh-postcentral                 97.4447     8.1502    71.0000   119.0000    48.0000 
    120. 

  120.  56 4023      4200     4151.8  wm-rh-posteriorcingulate         103.0090    10.4589    48.0000   130.0000    82.0000 
    121. 

  121.  57 4024     12088    12091.9  wm-rh-precentral                  98.3795     8.3497    66.0000   122.0000    56.0000 
    122. 

  122.  58 4025      8165     8081.1  wm-rh-precuneus                   99.8623     9.4758    43.0000   120.0000    77.0000 
    123. 

  123.  59 4026      2375     2295.5  wm-rh-rostralanteriorcingulate   102.3718    12.0651    23.0000   131.0000   108.0000 
    124. 

  124.  60 4027     13253    13375.0  wm-rh-rostralmiddlefrontal        99.1321     9.3370    68.0000   122.0000    54.0000 
    125. 

  125.  61 4028     18346    18173.0  wm-rh-superiorfrontal             95.7065     9.1893    67.0000   118.0000    51.0000 
    126. 

  126.  62 4029     10510    10635.8  wm-rh-superiorparietal            99.4478     8.6545    71.0000   122.0000    51.0000 
    127. 

  127.  63 4030      5266     5453.6  wm-rh-superiortemporal            92.1325    11.4244    57.0000   121.0000    64.0000 
    128. 

  128.  64 4031      6844     6837.7  wm-rh-supramarginal              101.9538     9.2254    73.0000   124.0000    51.0000 
    129. 

  129.  65 4032       300      286.4  wm-rh-frontalpole                 87.9767     8.9354    68.0000   109.0000    41.0000 
    130. 

  130.  66 4033       532      587.2  wm-rh-temporalpole                76.1729     8.0591    52.0000   100.0000    48.0000 
    131. 

  131.  67 4034       650      632.2  wm-rh-transversetemporal          98.3108     7.5355    77.0000   115.0000    38.0000 
    132. 

  132.  68 4035      9172     9145.4  wm-rh-insula                      92.3667    12.5323     5.0000   120.0000   115.0000 
    133. 

  133.  69 5001     22219    22203.8  Left-UnsegmentedWhiteMatter      101.0609    10.9898    14.0000   129.0000   115.0000 
    134. 

  134.  70 5002     22254    22273.3  Right-UnsegmentedWhiteMatter     100.8610    10.1673     9.0000   129.0000   120.0000 
    135.