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ABIDE_fs-6.0.0
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0050128
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050128 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-932
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050128
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1250138.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1236300.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1236517.105681, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 11675.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 293594.020034, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 285925.185714, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 579519.205748, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 224652.850139, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 220127.049794, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 444779.899933, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 65651.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 764371.205748, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1105281.105681, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1093606.105681, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1089749.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1661879.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.824490, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.096041, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 99, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 70, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 169, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1516255.833771, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 02:50:22 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 18:39:39 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 18:39:39 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      5525     5842.5  Left-Lateral-Ventricle            32.1119    14.9433     0.0000    88.0000    88.0000 
    82. 

  82.   2   5       133      167.7  Left-Inf-Lat-Vent                 40.0827    13.6410     9.0000    75.0000    66.0000 
    83. 

  83.   3   7     13748    14115.9  Left-Cerebellum-White-Matter      80.8182     7.4749    27.0000    99.0000    72.0000 
    84. 

  84.   4   8     58749    59142.5  Left-Cerebellum-Cortex            56.8279    10.2260     1.0000   112.0000   111.0000 
    85. 

  85.   5  10      9078     8851.9  Left-Thalamus-Proper              84.5531     9.2755    41.0000   111.0000    70.0000 
    86. 

  86.   6  11      4375     4315.8  Left-Caudate                      74.4107     7.7427    43.0000    98.0000    55.0000 
    87. 

  87.   7  12      5933     5884.0  Left-Putamen                      80.1269     6.7536    39.0000   104.0000    65.0000 
    88. 

  88.   8  13      2189     2118.0  Left-Pallidum                     93.0717     5.8598    38.0000   112.0000    74.0000 
    89. 

  89.   9  14       501      588.3  3rd-Ventricle                     47.7106    12.0526    14.0000    75.0000    61.0000 
    90. 

  90.  10  15       996     1105.2  4th-Ventricle                     30.0773    12.2524     4.0000    73.0000    69.0000 
    91. 

  91.  11  16     20542    20462.6  Brain-Stem                        77.5739     8.9316    13.0000   140.0000   127.0000 
    92. 

  92.  12  17      4201     4043.3  Left-Hippocampus                  64.6172     8.4593    19.0000   109.0000    90.0000 
    93. 

  93.  13  18      1711     1665.2  Left-Amygdala                     64.8019     6.6666    41.0000    94.0000    53.0000 
    94. 

  94.  14  24       666      707.8  CSF                               50.5901    12.8028    12.0000    90.0000    78.0000 
    95. 

  95.  15  26       689      690.0  Left-Accumbens-area               69.9797     5.7458    52.0000    97.0000    45.0000 
    96. 

  96.  16  28      4468     4231.6  Left-VentralDC                    85.9129    10.6829    29.0000   154.0000   125.0000 
    97. 

  97.  17  30         3        9.0  Left-vessel                       56.0000     6.0828    49.0000    60.0000    11.0000 
    98. 

  98.  18  31       367      333.0  Left-choroid-plexus               50.8311    12.1686    15.0000    94.0000    79.0000 
    99. 

  99.  19  43      4850     4990.1  Right-Lateral-Ventricle           33.8157    17.0534     0.0000   101.0000   101.0000 
    100. 

  100.  20  44       367      376.7  Right-Inf-Lat-Vent                35.0899    16.0636     3.0000    75.0000    72.0000 
    101. 

  101.  21  46     13597    13934.1  Right-Cerebellum-White-Matter     80.1154     7.1902    27.0000   103.0000    76.0000 
    102. 

  102.  22  47     58636    58916.1  Right-Cerebellum-Cortex           56.7285     9.8864     2.0000   115.0000   113.0000 
    103. 

  103.  23  49      8533     8224.4  Right-Thalamus-Proper             81.9428     8.7649    27.0000   107.0000    80.0000 
    104. 

  104.  24  50      4352     4360.9  Right-Caudate                     75.3398     7.3628    47.0000    97.0000    50.0000 
    105. 

  105.  25  51      6144     6093.1  Right-Putamen                     79.3468     6.8444    30.0000   109.0000    79.0000 
    106. 

  106.  26  52      2062     1995.3  Right-Pallidum                    92.9428     5.8860    50.0000   113.0000    63.0000 
    107. 

  107.  27  53      4491     4367.1  Right-Hippocampus                 64.3783     8.3480    22.0000   106.0000    84.0000 
    108. 

  108.  28  54      1987     1928.1  Right-Amygdala                    63.7655     7.0030    36.0000    88.0000    52.0000 
    109. 

  109.  29  58       730      698.2  Right-Accumbens-area              71.8849     6.6233    53.0000   105.0000    52.0000 
    110. 

  110.  30  60      4746     4527.7  Right-VentralDC                   85.3249    10.6217    36.0000   157.0000   121.0000 
    111. 

  111.  31  62        18       29.1  Right-vessel                      51.4444     9.6114    34.0000    67.0000    33.0000 
    112. 

  112.  32  63       433      376.7  Right-choroid-plexus              53.1016    14.0084    16.0000    94.0000    78.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       587      538.9  WM-hypointensities                68.9625     9.9175    38.0000    94.0000    56.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85         9        6.3  Optic-Chiasm                      78.8889    22.8880    47.0000   107.0000    60.0000 
    121. 

  121.  41 251      1237     1159.2  CC_Posterior                      99.3913    14.1750    31.0000   119.0000    88.0000 
    122. 

  122.  42 252       796      692.7  CC_Mid_Posterior                  92.4234    18.2076    14.0000   120.0000   106.0000 
    123. 

  123.  43 253       667      588.3  CC_Central                        91.9430    19.5541    36.0000   123.0000    87.0000 
    124. 

  124.  44 254       767      683.2  CC_Mid_Anterior                   95.7510    17.8009    39.0000   125.0000    86.0000 
    125. 

  125.  45 255      1248     1185.2  CC_Anterior                      100.2604    24.5402    31.0000   193.0000   162.0000 
    126.