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|
- Sat Oct 7 18:04:56 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/recon-all
- -subjid 0050116 -sd fs-6.0.0 -i /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Olin/0050116/session_1/anat_1/mprage.nii.gz -autorecon-all -parallel -openmp 2
- subjid 0050116
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Actual FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- Linux tars-925 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- cputime unlimited
- filesize unlimited
- datasize unlimited
- stacksize 10240 kbytes
- coredumpsize 0 kbytes
- memoryuse 10485760 kbytes
- vmemoryuse unlimited
- descriptors 65536
- memorylocked 64 kbytes
- maxproc 1024
- total used free shared buffers cached
- Mem: 66074808 57983220 8091588 1728792 0 54304924
- -/+ buffers/cache: 3678296 62396512
- Swap: 0 0 0
- ########################################
- program versions used
- $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $
- $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $
- mri_convert.bin -all-info
- ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- FLIRT version 5.5
- $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $
- mri_convert.bin --version
- stable6
- ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $
- ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $
- ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2017/10/07-16:04:56-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: ntraut Machine: tars-925 Platform: Linux PlatformVersion: 2.6.32-696.3.2.el6.x86_64 CompilerName: GCC CompilerVersion: 40400
- #######################################
- GCADIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCA RB_all_2016-05-10.vc700.gca
- GCASkull RB_all_withskull_2016-05-10.vc700.gca
- AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif
- GCSDIR /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average
- GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs
- #######################################
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Olin/0050116/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig/001.mgz
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Olin/0050116/session_1/anat_1/mprage.nii.gz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig/001.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/_orig/raw_nii/Olin/0050116/session_1/anat_1/mprage.nii.gz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -0, 0)
- j_ras = (-0, 1, 0)
- k_ras = (-0, -0, 1)
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig/001.mgz...
- #--------------------------------------------
- #@# MotionCor Sat Oct 7 18:04:59 CEST 2017
- Found 1 runs
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig/001.mgz
- Checking for (invalid) multi-frame inputs...
- WARNING: only one run found. This is OK, but motion
- correction cannot be performed on one run, so I'll
- copy the run to rawavg and continue.
- cp /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig/001.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_convert /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz --conform
- mri_convert.bin /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, -0, 0)
- j_ras = (-0, 1, 0)
- k_ras = (-0, -0, 1)
- changing data type from short to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- Reslicing using trilinear interpolation
- writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz...
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/transforms/talairach.xfm /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Talairach Sat Oct 7 18:05:09 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
- nIters 1
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-925 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 18:05:09 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.6537
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.6537/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.6537/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.6537/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 18:05:12 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.6537/nu0.mnc ./tmp.mri_nu_correct.mni.6537/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.6537/0/ -iterations 1000 -distance 50
- [ntraut@tars-925:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/] [2017-10-07 18:05:12] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.6537/0/ ./tmp.mri_nu_correct.mni.6537/nu0.mnc ./tmp.mri_nu_correct.mni.6537/nu1.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Processing:.................................................................Done
- Number of iterations: 49
- CV of field change: 0.000977083
-
-
-
- mri_convert ./tmp.mri_nu_correct.mni.6537/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- mri_convert.bin ./tmp.mri_nu_correct.mni.6537/nu1.mnc orig_nu.mgz --like orig.mgz --conform
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.6537/nu1.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- INFO: transform src into the like-volume: orig.mgz
- changing data type from float to uchar (noscale = 0)...
- MRIchangeType: Building histogram
- writing to orig_nu.mgz...
-
-
- Sat Oct 7 18:06:28 CEST 2017
- mri_nu_correct.mni done
- talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm
- talairach_avi log file is transforms/talairach_avi.log...
- Started at Sat Oct 7 18:06:29 CEST 2017
- Ended at Sat Oct 7 18:07:08 CEST 2017
- talairach_avi done
- cp transforms/talairach.auto.xfm transforms/talairach.xfm
- #--------------------------------------------
- #@# Talairach Failure Detection Sat Oct 7 18:07:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- talairach_afd -T 0.005 -xfm transforms/talairach.xfm
- talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.7124, pval=0.4932 >= threshold=0.0050)
- awk -f /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/extract_talairach_avi_QA.awk /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/transforms/talairach_avi.log
- tal_QC_AZS /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/transforms/talairach_avi.log
- TalAviQA: 0.98344
- z-score: 1
- #--------------------------------------------
- #@# Nu Intensity Correction Sat Oct 7 18:07:11 CEST 2017
- mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
- --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2
- nIters 2
- $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
- Linux tars-925 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- Sat Oct 7 18:07:11 CEST 2017
- Program nu_correct, built from:
- Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
- /usr/bin/bc
- tmpdir is ./tmp.mri_nu_correct.mni.7415
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_convert orig.mgz ./tmp.mri_nu_correct.mni.7415/nu0.mnc -odt float
- mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.7415/nu0.mnc -odt float
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from orig.mgz...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- changing data type from uchar to float (noscale = 0)...
- writing to ./tmp.mri_nu_correct.mni.7415/nu0.mnc...
-
- --------------------------------------------------------
- Iteration 1 Sat Oct 7 18:07:13 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.7415/nu0.mnc ./tmp.mri_nu_correct.mni.7415/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.7415/0/
- [ntraut@tars-925:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/] [2017-10-07 18:07:13] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.7415/0/ ./tmp.mri_nu_correct.mni.7415/nu0.mnc ./tmp.mri_nu_correct.mni.7415/nu1.imp
- Processing:.................................................................Done
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- Processing:.................................................................Done
- Number of iterations: 48
- CV of field change: 0.000997986
-
-
- --------------------------------------------------------
- Iteration 2 Sat Oct 7 18:08:07 CEST 2017
- nu_correct -clobber ./tmp.mri_nu_correct.mni.7415/nu1.mnc ./tmp.mri_nu_correct.mni.7415/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.7415/1/
- [ntraut@tars-925:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/] [2017-10-07 18:08:07] running:
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.7415/1/ ./tmp.mri_nu_correct.mni.7415/nu1.mnc ./tmp.mri_nu_correct.mni.7415/nu2.imp
- Processing:.................................................................Done
- Processing:.................................................................Done
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- Processing:.................................................................Done
- Number of iterations: 17
- CV of field change: 0.000999739
-
-
-
- mri_binarize --i ./tmp.mri_nu_correct.mni.7415/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.7415/ones.mgz
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.7415/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.7415/ones.mgz
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- input ./tmp.mri_nu_correct.mni.7415/nu2.mnc
- frame 0
- nErode3d 0
- nErode2d 0
- output ./tmp.mri_nu_correct.mni.7415/ones.mgz
- Binarizing based on threshold
- min -1
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Found 16777216 values in range
- Counting number of voxels in first frame
- Found 16777216 voxels in final mask
- Count: 16777216 16777216.000000 16777216 100.000000
- mri_binarize done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.7415/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.7415/sum.junk --avgwf ./tmp.mri_nu_correct.mni.7415/input.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.7415/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.7415/sum.junk --avgwf ./tmp.mri_nu_correct.mni.7415/input.mean.dat
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.7415/ones.mgz
- Loading orig.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.7415/input.mean.dat
- mri_segstats done
- mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.7415/ones.mgz --i ./tmp.mri_nu_correct.mni.7415/nu2.mnc --sum ./tmp.mri_nu_correct.mni.7415/sum.junk --avgwf ./tmp.mri_nu_correct.mni.7415/output.mean.dat
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.7415/ones.mgz --i ./tmp.mri_nu_correct.mni.7415/nu2.mnc --sum ./tmp.mri_nu_correct.mni.7415/sum.junk --avgwf ./tmp.mri_nu_correct.mni.7415/output.mean.dat
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- UseRobust 0
- Loading ./tmp.mri_nu_correct.mni.7415/ones.mgz
- Loading ./tmp.mri_nu_correct.mni.7415/nu2.mnc
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 1 segmentations
- Computing statistics for each segmentation
- Reporting on 1 segmentations
- Using PrintSegStat
- Computing spatial average of each frame
- 0
- Writing to ./tmp.mri_nu_correct.mni.7415/output.mean.dat
- mri_segstats done
- mris_calc -o ./tmp.mri_nu_correct.mni.7415/nu2.mnc ./tmp.mri_nu_correct.mni.7415/nu2.mnc mul .98702018259491978695
- Saving result to './tmp.mri_nu_correct.mni.7415/nu2.mnc' (type = MINC ) [ ok ]
- mri_convert ./tmp.mri_nu_correct.mni.7415/nu2.mnc nu.mgz --like orig.mgz
- mri_convert.bin ./tmp.mri_nu_correct.mni.7415/nu2.mnc nu.mgz --like orig.mgz
- $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
- reading from ./tmp.mri_nu_correct.mni.7415/nu2.mnc...
- TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
- i_ras = (-1, 0, 0)
- j_ras = (0, 0, -1)
- k_ras = (0, 1, 0)
- INFO: transform src into the like-volume: orig.mgz
- writing to nu.mgz...
- mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz
- type change took 0 minutes and 9 seconds.
- mapping (10, 123) to ( 3, 110)
-
-
- Sat Oct 7 18:09:25 CEST 2017
- mri_nu_correct.mni done
- mri_add_xform_to_header -c /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/transforms/talairach.xfm nu.mgz nu.mgz
- INFO: extension is mgz
- #--------------------------------------------
- #@# Intensity Normalization Sat Oct 7 18:09:26 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_normalize -g 1 -mprage nu.mgz T1.mgz
- using max gradient = 1.000
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- reading from nu.mgz...
- normalizing image...
- talairach transform
- 1.01257 -0.07822 -0.03170 -1.01010;
- 0.07767 0.98936 0.32024 -14.00296;
- 0.02378 -0.22645 1.11576 0.13889;
- 0.00000 0.00000 0.00000 1.00000;
- processing without aseg, no1d=0
- MRInormInit():
- INFO: Modifying talairach volume c_(r,a,s) based on average_305
- MRInormalize():
- MRIsplineNormalize(): npeaks = 19
- Starting OpenSpline(): npoints = 19
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 109
- gm peak at 66 (66), valley at 30 (30)
- csf peak at 33, setting threshold to 55
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 66 (66), valley at 29 (29)
- csf peak at 34, setting threshold to 55
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to T1.mgz
- 3D bias adjustment took 2 minutes and 2 seconds.
- #--------------------------------------------
- #@# Skull Stripping Sat Oct 7 18:11:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta
- aligning to atlas containing skull, setting unknown_nbr_spacing = 5
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach_with_skull.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca'...
- average std = 22.9 using min determinant for regularization = 52.6
- 0 singular and 9002 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 8.7 or > 569.1
- total sample mean = 77.6 (1399 zeros)
- ************************************************
- spacing=8, using 3243 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 3243, passno 0, spacing 8
- resetting wm mean[0]: 100 --> 108
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=5.0
- skull bounding box = (41, 48, 17) --> (210, 201, 223)
- using (97, 99, 120) as brain centroid...
- mean wm in atlas = 108, using box (76,80,95) --> (117, 117,145) to find MRI wm
- before smoothing, mri peak at 106
- robust fit to distribution - 106 +- 6.0
- after smoothing, mri peak at 106, scaling input intensities by 1.019
- scaling channel 0 by 1.01887
- initial log_p = -4.368
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.326437 @ (-9.091, -9.091, -9.091)
- max log p = -4.220949 @ (4.545, -4.545, 4.545)
- max log p = -4.141987 @ (2.273, 2.273, -2.273)
- max log p = -4.130075 @ (3.409, 1.136, -3.409)
- max log p = -4.119722 @ (-2.841, -1.705, 1.705)
- max log p = -4.119722 @ (0.000, 0.000, 0.000)
- Found translation: (-1.7, -11.9, -8.5): log p = -4.120
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.867, old_max_log_p =-4.120 (thresh=-4.1)
- 0.99144 -0.03885 0.14499 -11.95312;
- 0.00000 1.19413 0.31997 -71.44129;
- -0.12074 -0.27296 1.01871 39.09020;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.864, old_max_log_p =-3.867 (thresh=-3.9)
- 0.99144 -0.03885 0.14499 -11.95312;
- 0.00000 1.19413 0.31997 -71.44129;
- -0.12979 -0.29344 1.09512 33.70272;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 2 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.774, old_max_log_p =-3.864 (thresh=-3.9)
- 1.01650 -0.02519 0.07319 -8.15517;
- 0.00802 1.14351 0.23390 -54.37372;
- -0.06319 -0.21272 1.09978 16.69340;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.774, old_max_log_p =-3.774 (thresh=-3.8)
- 1.01650 -0.02519 0.07319 -8.15517;
- 0.00802 1.14351 0.23390 -54.37372;
- -0.06319 -0.21272 1.09978 16.69340;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 4 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.756, old_max_log_p =-3.774 (thresh=-3.8)
- 1.01714 -0.02696 0.08230 -9.07982;
- 0.00800 1.14083 0.23335 -53.91306;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 5 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.754, old_max_log_p =-3.756 (thresh=-3.8)
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 3243 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 3243
- Quasinewton: input matrix
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 008: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.754 (old=-4.368)
- transform before final EM align:
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 364799 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 364799
- Quasinewton: input matrix
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 010: -log(p) = 4.2 tol 0.000000
- final transform:
- 1.01597 -0.01759 0.08411 -10.52409;
- -0.00030 1.14101 0.23267 -52.81316;
- -0.07140 -0.21226 1.09786 17.42270;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach_with_skull.lta...
- mri_em_register utimesec 1139.718736
- mri_em_register stimesec 1.163823
- mri_em_register ru_maxrss 609828
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 157573
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 32
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 78
- mri_em_register ru_nivcsw 2473
- registration took 9 minutes and 59 seconds.
- mri_watershed -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mri_watershed.dat -T1 -brain_atlas /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz
- Mode: T1 normalized volume
- Mode: Use the information of atlas (default parms, --help for details)
- *********************************************************
- The input file is T1.mgz
- The output file is brainmask.auto.mgz
- Weighting the input with atlas information before watershed
- *************************WATERSHED**************************
- Sorting...
- first estimation of the COG coord: x=127 y=123 z=118 r=69
- first estimation of the main basin volume: 1405060 voxels
- Looking for seedpoints
- 2 found in the cerebellum
- 17 found in the rest of the brain
- global maximum in x=153, y=113, z=86, Imax=255
- CSF=18, WM_intensity=110, WM_VARIANCE=5
- WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110
- preflooding height equal to 10 percent
- done.
- Analyze...
- main basin size=9183600851 voxels, voxel volume =1.000
- = 9183600851 mmm3 = 9183600.640 cm3
- done.
- PostAnalyze...Basin Prior
- 159 basins merged thanks to atlas
- ***** 0 basin(s) merged in 1 iteration(s)
- ***** 0 voxel(s) added to the main basin
- done.
- Weighting the input with prior template
- ****************TEMPLATE DEFORMATION****************
- second estimation of the COG coord: x=126,y=127, z=111, r=10061 iterations
- ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^
- GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=34 , nb = 44956
- RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=22 , nb = -1031707408
- LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=31 , nb = -1057790766
- RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=34 , nb = 1069368576
- LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=34 , nb = 1077271154
- OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 1077379248
- Problem with the least square interpolation in GM_MIN calculation.
-
- CSF_MAX TRANSITION GM_MIN GM
- GLOBAL
- before analyzing : 34, 34, 35, 61
- after analyzing : 23, 34, 35, 40
- RIGHT_CER
- before analyzing : 22, 26, 33, 64
- after analyzing : 22, 30, 33, 38
- LEFT_CER
- before analyzing : 31, 33, 37, 68
- after analyzing : 31, 35, 37, 43
- RIGHT_BRAIN
- before analyzing : 34, 34, 35, 59
- after analyzing : 23, 34, 35, 40
- LEFT_BRAIN
- before analyzing : 34, 35, 36, 61
- after analyzing : 34, 35, 36, 41
- OTHER
- before analyzing : 4, 8, 66, 93
- after analyzing : 4, 46, 66, 57
- mri_strip_skull: done peeling brain
- highly tesselated surface with 10242 vertices
- matching...67 iterations
- *********************VALIDATION*********************
- curvature mean = -0.013, std = 0.010
- curvature mean = 72.205, std = 7.318
- No Rigid alignment: -atlas Mode Off (basic atlas / no registration)
- before rotation: sse = 2.35, sigma = 3.40
- after rotation: sse = 2.35, sigma = 3.40
- Localization of inacurate regions: Erosion-Dilation steps
- the sse mean is 2.43, its var is 2.90
- before Erosion-Dilatation 0.05% of inacurate vertices
- after Erosion-Dilatation 0.00% of inacurate vertices
- Validation of the shape of the surface done.
- Scaling of atlas fields onto current surface fields
- ********FINAL ITERATIVE TEMPLATE DEFORMATION********
- Compute Local values csf/gray
- Fine Segmentation...42 iterations
- mri_strip_skull: done peeling brain
- Brain Size = 1770306 voxels, voxel volume = 1.000 mm3
- = 1770306 mmm3 = 1770.306 cm3
- ******************************
- Saving brainmask.auto.mgz
- done
- mri_watershed utimesec 26.668945
- mri_watershed stimesec 0.411937
- mri_watershed ru_maxrss 824168
- mri_watershed ru_ixrss 0
- mri_watershed ru_idrss 0
- mri_watershed ru_isrss 0
- mri_watershed ru_minflt 213381
- mri_watershed ru_majflt 0
- mri_watershed ru_nswap 0
- mri_watershed ru_inblock 0
- mri_watershed ru_oublock 2896
- mri_watershed ru_msgsnd 0
- mri_watershed ru_msgrcv 0
- mri_watershed ru_nsignals 0
- mri_watershed ru_nvcsw 1142
- mri_watershed ru_nivcsw 55
- mri_watershed done
- cp brainmask.auto.mgz brainmask.mgz
- #-------------------------------------
- #@# EM Registration Sat Oct 7 18:21:54 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_em_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta
- setting unknown_nbr_spacing = 3
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_em_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 841 ill-conditioned covariance matrices regularized
- reading 'nu.mgz'...
- freeing gibbs priors...done.
- accounting for voxel sizes in initial transform
- bounding unknown intensity as < 6.3 or > 503.7
- total sample mean = 78.8 (1011 zeros)
- ************************************************
- spacing=8, using 2830 sample points, tol=1.00e-05...
- ************************************************
- register_mri: find_optimal_transform
- find_optimal_transform: nsamples 2830, passno 0, spacing 8
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=24.1
- skull bounding box = (55, 64, 29) --> (200, 201, 201)
- using (103, 110, 115) as brain centroid...
- mean wm in atlas = 107, using box (85,93,94) --> (120, 126,136) to find MRI wm
- before smoothing, mri peak at 106
- robust fit to distribution - 106 +- 5.9
- after smoothing, mri peak at 106, scaling input intensities by 1.009
- scaling channel 0 by 1.00943
- initial log_p = -4.039
- ************************************************
- First Search limited to translation only.
- ************************************************
- max log p = -4.004394 @ (-9.091, -9.091, -9.091)
- max log p = -3.886373 @ (4.545, 4.545, -4.545)
- max log p = -3.716964 @ (2.273, -2.273, 6.818)
- max log p = -3.697344 @ (1.136, -1.136, -3.409)
- max log p = -3.684032 @ (0.568, -0.568, 0.568)
- max log p = -3.676189 @ (0.284, -1.420, 0.284)
- Found translation: (-0.3, -9.9, -9.4): log p = -3.676
- ****************************************
- Nine parameter search. iteration 0 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.550, old_max_log_p =-3.676 (thresh=-3.7)
- 0.99144 -0.01457 0.13007 -12.24933;
- 0.00000 1.13509 0.16902 -46.80825;
- -0.12074 -0.10236 0.91389 29.07677;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 1 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.544, old_max_log_p =-3.550 (thresh=-3.5)
- 0.99144 -0.01457 0.13007 -12.24933;
- -0.01576 1.11202 0.28686 -55.35523;
- -0.12868 -0.26837 0.95031 47.35772;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 2 nscales = 0 ...
- ****************************************
- Result so far: scale 1.000: max_log_p=-3.542, old_max_log_p =-3.544 (thresh=-3.5)
- 0.99144 -0.01457 0.13007 -12.24933;
- 0.00117 1.13754 0.16036 -46.27929;
- -0.11991 -0.11185 0.90615 31.08779;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.2500
- ****************************************
- Nine parameter search. iteration 3 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.393, old_max_log_p =-3.542 (thresh=-3.5)
- 1.01326 -0.04267 0.09629 -7.50140;
- 0.01990 1.12066 0.25033 -55.05490;
- -0.09067 -0.23727 0.94027 41.72982;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 4 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.387, old_max_log_p =-3.393 (thresh=-3.4)
- 1.01326 -0.04267 0.09629 -7.50140;
- 0.01953 1.09965 0.24564 -51.78594;
- -0.09237 -0.24172 0.95790 42.41018;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 5 nscales = 1 ...
- ****************************************
- Result so far: scale 0.250: max_log_p=-3.385, old_max_log_p =-3.387 (thresh=-3.4)
- 1.01256 0.02982 0.11009 -20.13700;
- -0.04296 1.08662 0.20352 -35.61974;
- -0.09340 -0.20946 0.98353 33.68528;
- 0.00000 0.00000 0.00000 1.00000;
- reducing scale to 0.0625
- ****************************************
- Nine parameter search. iteration 6 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.370, old_max_log_p =-3.385 (thresh=-3.4)
- 1.01211 0.03142 0.10193 -19.36466;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 7 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.364, old_max_log_p =-3.370 (thresh=-3.4)
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- ****************************************
- Nine parameter search. iteration 8 nscales = 2 ...
- ****************************************
- Result so far: scale 0.062: max_log_p=-3.364, old_max_log_p =-3.364 (thresh=-3.4)
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- min search scale 0.025000 reached
- ***********************************************
- Computing MAP estimate using 2830 samples...
- ***********************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-05
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 2830
- Quasinewton: input matrix
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 011: -log(p) = -0.0 tol 0.000010
- Resulting transform:
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- pass 1, spacing 8: log(p) = -3.364 (old=-4.039)
- transform before final EM align:
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- **************************************************
- EM alignment process ...
- Computing final MAP estimate using 315557 samples.
- **************************************************
- dt = 5.00e-06, momentum=0.80, tol=1.00e-07
- l_intensity = 1.0000
- Aligning input volume to GCA...
- Transform matrix
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- nsamples 315557
- Quasinewton: input matrix
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- outof QuasiNewtonEMA: 013: -log(p) = 3.9 tol 0.000000
- final transform:
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- writing output transformation to transforms/talairach.lta...
- mri_em_register utimesec 1421.104959
- mri_em_register stimesec 1.550764
- mri_em_register ru_maxrss 599052
- mri_em_register ru_ixrss 0
- mri_em_register ru_idrss 0
- mri_em_register ru_isrss 0
- mri_em_register ru_minflt 158988
- mri_em_register ru_majflt 0
- mri_em_register ru_nswap 0
- mri_em_register ru_inblock 0
- mri_em_register ru_oublock 24
- mri_em_register ru_msgsnd 0
- mri_em_register ru_msgrcv 0
- mri_em_register ru_nsignals 0
- mri_em_register ru_nvcsw 110
- mri_em_register ru_nivcsw 3533
- registration took 12 minutes and 9 seconds.
- #--------------------------------------
- #@# CA Normalize Sat Oct 7 18:34:03 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz
- writing control point volume to ctrl_pts.mgz
- using MR volume brainmask.mgz to mask input volume...
- reading 1 input volume
- reading atlas from '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- reading transform from 'transforms/talairach.lta'...
- reading input volume from nu.mgz...
- resetting wm mean[0]: 98 --> 107
- resetting gm mean[0]: 61 --> 61
- input volume #1 is the most T1-like
- using real data threshold=24.1
- skull bounding box = (55, 64, 29) --> (200, 201, 201)
- using (103, 110, 115) as brain centroid...
- mean wm in atlas = 107, using box (85,93,94) --> (120, 126,136) to find MRI wm
- before smoothing, mri peak at 106
- robust fit to distribution - 106 +- 5.9
- after smoothing, mri peak at 106, scaling input intensities by 1.009
- scaling channel 0 by 1.00943
- using 246344 sample points...
- INFO: compute sample coordinates transform
- 1.01092 0.03138 0.10181 -19.19303;
- -0.04204 1.08448 0.19478 -34.01664;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- INFO: transform used
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (125, 66, 36) --> (195, 170, 201)
- Left_Cerebral_White_Matter: limiting intensities to 99.0 --> 132.0
- 0 of 75 (0.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (65, 67, 33) --> (133, 169, 199)
- Right_Cerebral_White_Matter: limiting intensities to 100.0 --> 132.0
- 0 of 35 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (131, 149, 65) --> (178, 188, 118)
- Left_Cerebellum_White_Matter: limiting intensities to 115.0 --> 132.0
- 11 of 13 (84.6%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (86, 148, 59) --> (131, 185, 116)
- Right_Cerebellum_White_Matter: limiting intensities to 102.0 --> 132.0
- 0 of 8 (0.0%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (111, 136, 98) --> (145, 201, 129)
- Brain_Stem: limiting intensities to 100.0 --> 132.0
- 4 of 8 (50.0%) samples deleted
- using 139 total control points for intensity normalization...
- bias field = 0.931 +- 0.074
- 0 of 124 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (125, 66, 36) --> (195, 170, 201)
- Left_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 0 of 141 (0.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (65, 67, 33) --> (133, 169, 199)
- Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 0 of 155 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (131, 149, 65) --> (178, 188, 118)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 38 of 72 (52.8%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (86, 148, 59) --> (131, 185, 116)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 42 of 72 (58.3%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (111, 136, 98) --> (145, 201, 129)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 84 of 142 (59.2%) samples deleted
- using 582 total control points for intensity normalization...
- bias field = 1.011 +- 0.077
- 0 of 416 control points discarded
- finding control points in Left_Cerebral_White_Matter....
- found 39915 control points for structure...
- bounding box (125, 66, 36) --> (195, 170, 201)
- Left_Cerebral_White_Matter: limiting intensities to 89.0 --> 132.0
- 0 of 263 (0.0%) samples deleted
- finding control points in Right_Cerebral_White_Matter....
- found 39557 control points for structure...
- bounding box (65, 67, 33) --> (133, 169, 199)
- Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0
- 0 of 231 (0.0%) samples deleted
- finding control points in Left_Cerebellum_White_Matter....
- found 3059 control points for structure...
- bounding box (131, 149, 65) --> (178, 188, 118)
- Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 61 of 93 (65.6%) samples deleted
- finding control points in Right_Cerebellum_White_Matter....
- found 2705 control points for structure...
- bounding box (86, 148, 59) --> (131, 185, 116)
- Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0
- 53 of 72 (73.6%) samples deleted
- finding control points in Brain_Stem....
- found 3518 control points for structure...
- bounding box (111, 136, 98) --> (145, 201, 129)
- Brain_Stem: limiting intensities to 88.0 --> 132.0
- 146 of 185 (78.9%) samples deleted
- using 844 total control points for intensity normalization...
- bias field = 1.006 +- 0.050
- 0 of 574 control points discarded
- writing normalized volume to norm.mgz...
- writing control points to ctrl_pts.mgz
- freeing GCA...done.
- normalization took 1 minutes and 45 seconds.
- #--------------------------------------
- #@# CA Reg Sat Oct 7 18:35:47 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_ca_register -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z
- not handling expanded ventricles...
- using previously computed transform transforms/talairach.lta
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -regularize_mean 0.500
- -regularize 0.500
- using MR volume brainmask.mgz to mask input volume...
- == Number of threads available to mri_ca_register for OpenMP = 2 ==
- reading 1 input volumes...
- logging results to talairach.log
- reading input volume 'norm.mgz'...
- reading GCA '/pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca'...
- label assignment complete, 0 changed (0.00%)
- det(m_affine) = 1.13 (predicted orig area = 7.1)
- label assignment complete, 0 changed (0.00%)
- freeing gibbs priors...done.
- average std[0] = 5.0
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.039
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.828, neg=0, invalid=762
- 0001: dt=221.952000, rms=0.739 (10.771%), neg=0, invalid=762
- 0002: dt=243.162518, rms=0.717 (3.020%), neg=0, invalid=762
- 0003: dt=193.122807, rms=0.708 (1.241%), neg=0, invalid=762
- 0004: dt=221.952000, rms=0.703 (0.636%), neg=0, invalid=762
- 0005: dt=221.952000, rms=0.699 (0.559%), neg=0, invalid=762
- 0006: dt=129.472000, rms=0.697 (0.280%), neg=0, invalid=762
- 0007: dt=1183.744000, rms=0.689 (1.222%), neg=0, invalid=762
- 0008: dt=129.472000, rms=0.687 (0.299%), neg=0, invalid=762
- 0009: dt=887.808000, rms=0.684 (0.469%), neg=0, invalid=762
- 0010: dt=129.472000, rms=0.682 (0.244%), neg=0, invalid=762
- 0011: dt=129.472000, rms=0.681 (0.093%), neg=0, invalid=762
- 0012: dt=129.472000, rms=0.681 (0.112%), neg=0, invalid=762
- 0013: dt=129.472000, rms=0.680 (0.143%), neg=0, invalid=762
- 0014: dt=129.472000, rms=0.678 (0.178%), neg=0, invalid=762
- 0015: dt=129.472000, rms=0.677 (0.203%), neg=0, invalid=762
- 0016: dt=129.472000, rms=0.676 (0.221%), neg=0, invalid=762
- 0017: dt=129.472000, rms=0.674 (0.222%), neg=0, invalid=762
- 0018: dt=129.472000, rms=0.673 (0.220%), neg=0, invalid=762
- 0019: dt=129.472000, rms=0.671 (0.199%), neg=0, invalid=762
- 0020: dt=129.472000, rms=0.670 (0.188%), neg=0, invalid=762
- 0021: dt=129.472000, rms=0.669 (0.155%), neg=0, invalid=762
- 0022: dt=129.472000, rms=0.668 (0.136%), neg=0, invalid=762
- 0023: dt=129.472000, rms=0.667 (0.119%), neg=0, invalid=762
- 0024: dt=129.472000, rms=0.666 (0.127%), neg=0, invalid=762
- 0025: dt=129.472000, rms=0.666 (0.121%), neg=0, invalid=762
- 0026: dt=129.472000, rms=0.665 (0.126%), neg=0, invalid=762
- 0027: dt=129.472000, rms=0.664 (0.123%), neg=0, invalid=762
- 0028: dt=129.472000, rms=0.663 (0.109%), neg=0, invalid=762
- 0029: dt=221.952000, rms=0.663 (0.010%), neg=0, invalid=762
- 0030: dt=221.952000, rms=0.663 (0.034%), neg=0, invalid=762
- 0031: dt=221.952000, rms=0.663 (0.038%), neg=0, invalid=762
- 0032: dt=221.952000, rms=0.662 (0.047%), neg=0, invalid=762
- 0033: dt=221.952000, rms=0.662 (0.063%), neg=0, invalid=762
- 0034: dt=221.952000, rms=0.661 (0.061%), neg=0, invalid=762
- 0035: dt=221.952000, rms=0.661 (0.063%), neg=0, invalid=762
- 0036: dt=221.952000, rms=0.661 (0.059%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.661, neg=0, invalid=762
- 0037: dt=443.904000, rms=0.658 (0.425%), neg=0, invalid=762
- 0038: dt=295.936000, rms=0.657 (0.140%), neg=0, invalid=762
- 0039: dt=295.936000, rms=0.657 (-0.045%), neg=0, invalid=762
- setting smoothness coefficient to 0.154
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.663, neg=0, invalid=762
- 0040: dt=145.152000, rms=0.659 (0.618%), neg=0, invalid=762
- 0041: dt=246.857143, rms=0.649 (1.511%), neg=0, invalid=762
- 0042: dt=61.922078, rms=0.645 (0.547%), neg=0, invalid=762
- 0043: dt=497.664000, rms=0.640 (0.794%), neg=0, invalid=762
- 0044: dt=100.380032, rms=0.635 (0.873%), neg=0, invalid=762
- 0045: dt=75.439614, rms=0.633 (0.224%), neg=0, invalid=762
- 0046: dt=75.439614, rms=0.633 (0.108%), neg=0, invalid=762
- 0047: dt=75.439614, rms=0.631 (0.198%), neg=0, invalid=762
- 0048: dt=75.439614, rms=0.629 (0.316%), neg=0, invalid=762
- 0049: dt=75.439614, rms=0.627 (0.315%), neg=0, invalid=762
- 0050: dt=75.439614, rms=0.625 (0.358%), neg=0, invalid=762
- 0051: dt=75.439614, rms=0.623 (0.353%), neg=0, invalid=762
- 0052: dt=75.439614, rms=0.621 (0.363%), neg=0, invalid=762
- 0053: dt=75.439614, rms=0.619 (0.293%), neg=0, invalid=762
- 0054: dt=75.439614, rms=0.617 (0.290%), neg=0, invalid=762
- 0055: dt=75.439614, rms=0.615 (0.264%), neg=0, invalid=762
- 0056: dt=75.439614, rms=0.614 (0.255%), neg=0, invalid=762
- 0057: dt=75.439614, rms=0.613 (0.200%), neg=0, invalid=762
- 0058: dt=75.439614, rms=0.611 (0.185%), neg=0, invalid=762
- 0059: dt=75.439614, rms=0.610 (0.162%), neg=0, invalid=762
- 0060: dt=75.439614, rms=0.610 (0.150%), neg=0, invalid=762
- 0061: dt=75.439614, rms=0.609 (0.106%), neg=0, invalid=762
- 0062: dt=75.439614, rms=0.608 (0.102%), neg=0, invalid=762
- 0063: dt=103.680000, rms=0.608 (0.022%), neg=0, invalid=762
- 0064: dt=103.680000, rms=0.608 (-0.011%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.609, neg=0, invalid=762
- 0065: dt=103.680000, rms=0.606 (0.364%), neg=0, invalid=762
- 0066: dt=124.416000, rms=0.606 (0.097%), neg=0, invalid=762
- 0067: dt=124.416000, rms=0.606 (-0.058%), neg=0, invalid=762
- setting smoothness coefficient to 0.588
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.631, neg=0, invalid=762
- 0068: dt=6.400000, rms=0.630 (0.140%), neg=0, invalid=762
- 0069: dt=2.400000, rms=0.630 (0.009%), neg=0, invalid=762
- 0070: dt=2.400000, rms=0.630 (0.000%), neg=0, invalid=762
- 0071: dt=2.400000, rms=0.630 (-0.024%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.631, neg=0, invalid=762
- 0072: dt=0.300000, rms=0.630 (0.078%), neg=0, invalid=762
- 0073: dt=0.043750, rms=0.630 (-0.000%), neg=0, invalid=762
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.696, neg=0, invalid=762
- 0074: dt=5.949091, rms=0.676 (2.753%), neg=0, invalid=762
- 0075: dt=4.650000, rms=0.675 (0.237%), neg=0, invalid=762
- 0076: dt=4.650000, rms=0.675 (-0.003%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.675, neg=0, invalid=762
- 0077: dt=0.000000, rms=0.675 (0.061%), neg=0, invalid=762
- 0078: dt=0.000000, rms=0.675 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 5.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.733, neg=0, invalid=762
- 0079: dt=0.448000, rms=0.732 (0.198%), neg=0, invalid=762
- 0080: dt=1.280000, rms=0.730 (0.221%), neg=0, invalid=762
- 0081: dt=3.171620, rms=0.725 (0.752%), neg=0, invalid=762
- 0082: dt=0.000000, rms=0.725 (0.001%), neg=0, invalid=762
- 0083: dt=0.100000, rms=0.725 (-0.002%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.725, neg=0, invalid=762
- 0084: dt=0.448000, rms=0.724 (0.099%), neg=0, invalid=762
- 0085: dt=1.280000, rms=0.724 (0.073%), neg=0, invalid=762
- 0086: dt=1.280000, rms=0.722 (0.257%), neg=0, invalid=762
- 0087: dt=1.280000, rms=0.721 (0.176%), neg=0, invalid=762
- 0088: dt=1.280000, rms=0.721 (-0.077%), neg=0, invalid=762
- 0089: dt=0.000000, rms=0.721 (0.000%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 10.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.678, neg=0, invalid=762
- 0090: dt=0.807669, rms=0.661 (2.486%), neg=0, invalid=762
- 0091: dt=0.080000, rms=0.660 (0.133%), neg=0, invalid=762
- 0092: dt=0.080000, rms=0.660 (-0.085%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.661, neg=0, invalid=762
- 0093: dt=0.028000, rms=0.660 (0.089%), neg=0, invalid=762
- 0094: dt=0.016000, rms=0.660 (0.002%), neg=0, invalid=762
- 0095: dt=0.016000, rms=0.660 (-0.003%), neg=0, invalid=762
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.10027 (20)
- mri peak = 0.11225 (20)
- Left_Lateral_Ventricle (4): linear fit = 0.94 x + 0.0 (525 voxels, overlap=0.719)
- Left_Lateral_Ventricle (4): linear fit = 0.94 x + 0.0 (525 voxels, peak = 19), gca=18.7
- gca peak = 0.15565 (16)
- mri peak = 0.08786 (16)
- Right_Lateral_Ventricle (43): linear fit = 1.10 x + 0.0 (1043 voxels, overlap=0.878)
- Right_Lateral_Ventricle (43): linear fit = 1.10 x + 0.0 (1043 voxels, peak = 18), gca=17.5
- gca peak = 0.26829 (96)
- mri peak = 0.08716 (91)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (886 voxels, overlap=0.824)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (886 voxels, peak = 93), gca=92.6
- gca peak = 0.20183 (93)
- mri peak = 0.07376 (93)
- Left_Pallidum (13): linear fit = 0.98 x + 0.0 (716 voxels, overlap=0.932)
- Left_Pallidum (13): linear fit = 0.98 x + 0.0 (716 voxels, peak = 91), gca=90.7
- gca peak = 0.21683 (55)
- mri peak = 0.08711 (63)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (848 voxels, overlap=0.999)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (848 voxels, peak = 57), gca=57.5
- gca peak = 0.30730 (58)
- mri peak = 0.07576 (61)
- Left_Hippocampus (17): linear fit = 1.10 x + 0.0 (691 voxels, overlap=0.995)
- Left_Hippocampus (17): linear fit = 1.10 x + 0.0 (691 voxels, peak = 64), gca=63.5
- gca peak = 0.11430 (101)
- mri peak = 0.08149 (105)
- Right_Cerebral_White_Matter (41): linear fit = 1.04 x + 0.0 (55299 voxels, overlap=0.748)
- Right_Cerebral_White_Matter (41): linear fit = 1.04 x + 0.0 (55299 voxels, peak = 106), gca=105.5
- gca peak = 0.12076 (102)
- mri peak = 0.08075 (106)
- Left_Cerebral_White_Matter (2): linear fit = 1.07 x + 0.0 (58303 voxels, overlap=0.656)
- Left_Cerebral_White_Matter (2): linear fit = 1.07 x + 0.0 (58303 voxels, peak = 109), gca=108.6
- gca peak = 0.14995 (59)
- mri peak = 0.04313 (63)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (20474 voxels, overlap=0.988)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (20474 voxels, peak = 60), gca=60.5
- gca peak = 0.15082 (58)
- mri peak = 0.04366 (59)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (22596 voxels, overlap=0.997)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (22596 voxels, peak = 59), gca=59.4
- gca peak = 0.14161 (67)
- mri peak = 0.10323 (70)
- Right_Caudate (50): linear fit = 1.03 x + 0.0 (361 voxels, overlap=0.823)
- Right_Caudate (50): linear fit = 1.03 x + 0.0 (361 voxels, peak = 69), gca=69.3
- gca peak = 0.15243 (71)
- mri peak = 0.10532 (78)
- Left_Caudate (11): linear fit = 1.03 x + 0.0 (927 voxels, overlap=0.837)
- Left_Caudate (11): linear fit = 1.03 x + 0.0 (927 voxels, peak = 73), gca=73.5
- gca peak = 0.13336 (57)
- mri peak = 0.03618 (48)
- Left_Cerebellum_Cortex (8): linear fit = 0.94 x + 0.0 (22553 voxels, overlap=0.964)
- Left_Cerebellum_Cortex (8): linear fit = 0.94 x + 0.0 (22553 voxels, peak = 54), gca=53.9
- gca peak = 0.13252 (56)
- mri peak = 0.03710 (48)
- Right_Cerebellum_Cortex (47): linear fit = 0.88 x + 0.0 (28032 voxels, overlap=0.690)
- Right_Cerebellum_Cortex (47): linear fit = 0.88 x + 0.0 (28032 voxels, peak = 49), gca=49.0
- gca peak = 0.18181 (84)
- mri peak = 0.06888 (85)
- Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (8971 voxels, overlap=0.929)
- Left_Cerebellum_White_Matter (7): linear fit = 1.02 x + 0.0 (8971 voxels, peak = 86), gca=86.1
- gca peak = 0.20573 (83)
- mri peak = 0.07178 (85)
- Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (8183 voxels, overlap=0.978)
- Right_Cerebellum_White_Matter (46): linear fit = 1.01 x + 0.0 (8183 voxels, peak = 84), gca=84.2
- gca peak = 0.21969 (57)
- mri peak = 0.08136 (67)
- Left_Amygdala (18): linear fit = 1.12 x + 0.0 (443 voxels, overlap=0.847)
- Left_Amygdala (18): linear fit = 1.12 x + 0.0 (443 voxels, peak = 64), gca=63.6
- gca peak = 0.39313 (56)
- mri peak = 0.09242 (64)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (541 voxels, overlap=0.910)
- Right_Amygdala (54): linear fit = 1.04 x + 0.0 (541 voxels, peak = 59), gca=58.5
- gca peak = 0.14181 (85)
- mri peak = 0.05733 (92)
- Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (5806 voxels, overlap=0.880)
- Left_Thalamus_Proper (10): linear fit = 1.07 x + 0.0 (5806 voxels, peak = 91), gca=90.5
- gca peak = 0.11978 (83)
- mri peak = 0.06416 (80)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4285 voxels, overlap=0.928)
- Right_Thalamus_Proper (49): linear fit = 1.00 x + 0.0 (4285 voxels, peak = 83), gca=82.6
- gca peak = 0.13399 (79)
- mri peak = 0.06063 (84)
- Left_Putamen (12): linear fit = 1.04 x + 0.0 (2236 voxels, overlap=0.920)
- Left_Putamen (12): linear fit = 1.04 x + 0.0 (2236 voxels, peak = 83), gca=82.6
- gca peak = 0.14159 (79)
- mri peak = 0.06230 (83)
- Right_Putamen (51): linear fit = 1.04 x + 0.0 (2258 voxels, overlap=0.906)
- Right_Putamen (51): linear fit = 1.04 x + 0.0 (2258 voxels, peak = 83), gca=82.6
- gca peak = 0.10025 (80)
- mri peak = 0.11695 (83)
- Brain_Stem (16): linear fit = 1.07 x + 0.0 (12900 voxels, overlap=0.401)
- Brain_Stem (16): linear fit = 1.07 x + 0.0 (12900 voxels, peak = 85), gca=85.2
- gca peak = 0.13281 (86)
- mri peak = 0.06984 (95)
- Right_VentralDC (60): linear fit = 1.09 x + 0.0 (1519 voxels, overlap=0.725)
- Right_VentralDC (60): linear fit = 1.09 x + 0.0 (1519 voxels, peak = 93), gca=93.3
- gca peak = 0.12801 (89)
- mri peak = 0.07663 (91)
- Left_VentralDC (28): linear fit = 1.04 x + 0.0 (1521 voxels, overlap=0.796)
- Left_VentralDC (28): linear fit = 1.04 x + 0.0 (1521 voxels, peak = 93), gca=93.0
- gca peak = 0.20494 (23)
- uniform distribution in MR - rejecting arbitrary fit
- gca peak = 0.15061 (21)
- mri peak = 0.10003 (16)
- Fourth_Ventricle (15): linear fit = 0.82 x + 0.0 (296 voxels, overlap=0.685)
- Fourth_Ventricle (15): linear fit = 0.82 x + 0.0 (296 voxels, peak = 17), gca=17.3
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.18056 (32)
- gca peak Left_Thalamus = 0.64095 (94)
- gca peak Third_Ventricle = 0.20494 (23)
- gca peak CSF = 0.20999 (34)
- gca peak Left_Accumbens_area = 0.39030 (62)
- gca peak Left_undetermined = 0.95280 (25)
- gca peak Left_vessel = 0.67734 (53)
- gca peak Left_choroid_plexus = 0.09433 (44)
- gca peak Right_Inf_Lat_Vent = 0.23544 (26)
- gca peak Right_Accumbens_area = 0.30312 (64)
- gca peak Right_vessel = 0.46315 (51)
- gca peak Right_choroid_plexus = 0.14086 (44)
- gca peak Fifth_Ventricle = 0.51669 (36)
- gca peak WM_hypointensities = 0.09722 (76)
- gca peak non_WM_hypointensities = 0.11899 (47)
- gca peak Optic_Chiasm = 0.39033 (72)
- label assignment complete, 0 changed (0.00%)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.06 x + 0.0
- estimating mean wm scale to be 1.06 x + 0.0
- estimating mean csf scale to be 0.95 x + 0.0
- saving intensity scales to talairach.label_intensities.txt
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.682, neg=0, invalid=762
- 0096: dt=129.472000, rms=0.674 (1.160%), neg=0, invalid=762
- 0097: dt=129.472000, rms=0.671 (0.353%), neg=0, invalid=762
- 0098: dt=295.936000, rms=0.670 (0.218%), neg=0, invalid=762
- 0099: dt=221.952000, rms=0.668 (0.292%), neg=0, invalid=762
- 0100: dt=73.984000, rms=0.667 (0.081%), neg=0, invalid=762
- 0101: dt=517.888000, rms=0.666 (0.200%), neg=0, invalid=762
- 0102: dt=129.472000, rms=0.665 (0.139%), neg=0, invalid=762
- 0103: dt=129.472000, rms=0.665 (0.025%), neg=0, invalid=762
- 0104: dt=129.472000, rms=0.664 (0.064%), neg=0, invalid=762
- 0105: dt=129.472000, rms=0.664 (0.089%), neg=0, invalid=762
- 0106: dt=129.472000, rms=0.663 (0.098%), neg=0, invalid=762
- 0107: dt=129.472000, rms=0.663 (0.103%), neg=0, invalid=762
- 0108: dt=129.472000, rms=0.662 (0.113%), neg=0, invalid=762
- 0109: dt=129.472000, rms=0.661 (0.104%), neg=0, invalid=762
- 0110: dt=129.472000, rms=0.660 (0.091%), neg=0, invalid=762
- 0111: dt=129.472000, rms=0.660 (0.086%), neg=0, invalid=762
- 0112: dt=129.472000, rms=0.659 (0.102%), neg=0, invalid=762
- 0113: dt=129.472000, rms=0.659 (0.105%), neg=0, invalid=762
- 0114: dt=129.472000, rms=0.658 (0.090%), neg=0, invalid=762
- 0115: dt=129.472000, rms=0.658 (0.068%), neg=0, invalid=762
- 0116: dt=129.472000, rms=0.657 (0.063%), neg=0, invalid=762
- 0117: dt=129.472000, rms=0.657 (0.064%), neg=0, invalid=762
- 0118: dt=129.472000, rms=0.656 (0.059%), neg=0, invalid=762
- 0119: dt=129.472000, rms=0.656 (0.043%), neg=0, invalid=762
- 0120: dt=129.472000, rms=0.656 (0.041%), neg=0, invalid=762
- 0121: dt=129.472000, rms=0.655 (0.054%), neg=0, invalid=762
- 0122: dt=129.472000, rms=0.655 (0.067%), neg=0, invalid=762
- 0123: dt=129.472000, rms=0.655 (0.065%), neg=0, invalid=762
- 0124: dt=129.472000, rms=0.654 (0.060%), neg=0, invalid=762
- 0125: dt=129.472000, rms=0.654 (0.059%), neg=0, invalid=762
- 0126: dt=129.472000, rms=0.653 (0.060%), neg=0, invalid=762
- 0127: dt=129.472000, rms=0.653 (0.059%), neg=0, invalid=762
- 0128: dt=129.472000, rms=0.653 (0.052%), neg=0, invalid=762
- 0129: dt=129.472000, rms=0.652 (0.043%), neg=0, invalid=762
- 0130: dt=129.472000, rms=0.652 (0.042%), neg=0, invalid=762
- 0131: dt=129.472000, rms=0.652 (0.044%), neg=0, invalid=762
- 0132: dt=129.472000, rms=0.652 (0.042%), neg=0, invalid=762
- 0133: dt=129.472000, rms=0.651 (0.036%), neg=0, invalid=762
- 0134: dt=129.472000, rms=0.651 (0.033%), neg=0, invalid=762
- 0135: dt=129.472000, rms=0.651 (0.038%), neg=0, invalid=762
- 0136: dt=129.472000, rms=0.651 (0.039%), neg=0, invalid=762
- 0137: dt=129.472000, rms=0.650 (0.035%), neg=0, invalid=762
- 0138: dt=129.472000, rms=0.650 (0.032%), neg=0, invalid=762
- 0139: dt=129.472000, rms=0.650 (0.035%), neg=0, invalid=762
- 0140: dt=129.472000, rms=0.650 (0.040%), neg=0, invalid=762
- 0141: dt=129.472000, rms=0.649 (0.041%), neg=0, invalid=762
- 0142: dt=129.472000, rms=0.649 (0.033%), neg=0, invalid=762
- 0143: dt=129.472000, rms=0.649 (0.030%), neg=0, invalid=762
- 0144: dt=129.472000, rms=0.649 (0.033%), neg=0, invalid=762
- 0145: dt=129.472000, rms=0.649 (0.037%), neg=0, invalid=762
- 0146: dt=129.472000, rms=0.648 (0.036%), neg=0, invalid=762
- 0147: dt=129.472000, rms=0.648 (0.030%), neg=0, invalid=762
- 0148: dt=129.472000, rms=0.648 (0.026%), neg=0, invalid=762
- 0149: dt=129.472000, rms=0.648 (0.028%), neg=0, invalid=762
- 0150: dt=129.472000, rms=0.648 (0.030%), neg=0, invalid=762
- 0151: dt=129.472000, rms=0.647 (0.026%), neg=0, invalid=762
- 0152: dt=129.472000, rms=0.647 (0.023%), neg=0, invalid=762
- 0153: dt=129.472000, rms=0.647 (0.024%), neg=0, invalid=762
- 0154: dt=129.472000, rms=0.647 (0.028%), neg=0, invalid=762
- 0155: dt=129.472000, rms=0.647 (0.030%), neg=0, invalid=762
- 0156: dt=129.472000, rms=0.647 (0.027%), neg=0, invalid=762
- 0157: dt=129.472000, rms=0.646 (0.023%), neg=0, invalid=762
- 0158: dt=129.472000, rms=0.646 (0.024%), neg=0, invalid=762
- 0159: dt=129.472000, rms=0.646 (0.025%), neg=0, invalid=762
- 0160: dt=129.472000, rms=0.646 (0.025%), neg=0, invalid=762
- 0161: dt=129.472000, rms=0.646 (0.024%), neg=0, invalid=762
- 0162: dt=129.472000, rms=0.646 (0.023%), neg=0, invalid=762
- 0163: dt=8286.208000, rms=0.645 (0.129%), neg=0, invalid=762
- 0164: dt=32.368000, rms=0.645 (0.017%), neg=0, invalid=762
- 0165: dt=32.368000, rms=0.645 (0.000%), neg=0, invalid=762
- 0166: dt=32.368000, rms=0.645 (-0.008%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.645, neg=0, invalid=762
- 0167: dt=295.936000, rms=0.644 (0.231%), neg=0, invalid=762
- 0168: dt=129.472000, rms=0.643 (0.052%), neg=0, invalid=762
- 0169: dt=443.904000, rms=0.643 (0.064%), neg=0, invalid=762
- 0170: dt=92.480000, rms=0.643 (0.036%), neg=0, invalid=762
- 0171: dt=92.480000, rms=0.643 (0.006%), neg=0, invalid=762
- 0172: dt=92.480000, rms=0.643 (0.018%), neg=0, invalid=762
- 0173: dt=92.480000, rms=0.642 (0.023%), neg=0, invalid=762
- 0174: dt=92.480000, rms=0.642 (0.029%), neg=0, invalid=762
- 0175: dt=92.480000, rms=0.642 (0.032%), neg=0, invalid=762
- 0176: dt=92.480000, rms=0.642 (0.034%), neg=0, invalid=762
- 0177: dt=92.480000, rms=0.642 (0.033%), neg=0, invalid=762
- 0178: dt=92.480000, rms=0.641 (0.032%), neg=0, invalid=762
- 0179: dt=92.480000, rms=0.641 (0.031%), neg=0, invalid=762
- 0180: dt=92.480000, rms=0.641 (0.030%), neg=0, invalid=762
- 0181: dt=92.480000, rms=0.641 (0.028%), neg=0, invalid=762
- 0182: dt=92.480000, rms=0.641 (0.027%), neg=0, invalid=762
- 0183: dt=92.480000, rms=0.640 (0.026%), neg=0, invalid=762
- 0184: dt=92.480000, rms=0.640 (0.026%), neg=0, invalid=762
- 0185: dt=92.480000, rms=0.640 (0.024%), neg=0, invalid=762
- 0186: dt=92.480000, rms=0.640 (0.022%), neg=0, invalid=762
- 0187: dt=2071.552000, rms=0.640 (0.031%), neg=0, invalid=762
- 0188: dt=129.472000, rms=0.640 (0.017%), neg=0, invalid=762
- 0189: dt=129.472000, rms=0.640 (0.005%), neg=0, invalid=762
- 0190: dt=129.472000, rms=0.640 (0.006%), neg=0, invalid=762
- 0191: dt=129.472000, rms=0.640 (0.007%), neg=0, invalid=762
- 0192: dt=129.472000, rms=0.640 (0.008%), neg=0, invalid=762
- 0193: dt=129.472000, rms=0.639 (0.013%), neg=0, invalid=762
- 0194: dt=129.472000, rms=0.639 (0.014%), neg=0, invalid=762
- 0195: dt=129.472000, rms=0.639 (0.013%), neg=0, invalid=762
- 0196: dt=129.472000, rms=0.639 (0.011%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.641, neg=0, invalid=762
- 0197: dt=113.206030, rms=0.638 (0.471%), neg=0, invalid=762
- 0198: dt=145.152000, rms=0.633 (0.724%), neg=0, invalid=762
- 0199: dt=36.288000, rms=0.632 (0.268%), neg=0, invalid=762
- 0200: dt=497.664000, rms=0.625 (0.994%), neg=0, invalid=762
- 0201: dt=76.016878, rms=0.620 (0.842%), neg=0, invalid=762
- 0202: dt=36.288000, rms=0.619 (0.126%), neg=0, invalid=762
- 0203: dt=414.720000, rms=0.617 (0.436%), neg=0, invalid=762
- 0204: dt=88.000000, rms=0.614 (0.432%), neg=0, invalid=762
- 0205: dt=36.288000, rms=0.613 (0.175%), neg=0, invalid=762
- 0206: dt=124.416000, rms=0.612 (0.095%), neg=0, invalid=762
- 0207: dt=124.416000, rms=0.611 (0.215%), neg=0, invalid=762
- 0208: dt=36.288000, rms=0.610 (0.075%), neg=0, invalid=762
- 0209: dt=145.152000, rms=0.610 (0.121%), neg=0, invalid=762
- 0210: dt=145.152000, rms=0.609 (0.180%), neg=0, invalid=762
- 0211: dt=36.288000, rms=0.608 (0.084%), neg=0, invalid=762
- 0212: dt=145.152000, rms=0.608 (0.089%), neg=0, invalid=762
- 0213: dt=124.416000, rms=0.607 (0.154%), neg=0, invalid=762
- 0214: dt=36.288000, rms=0.606 (0.067%), neg=0, invalid=762
- 0215: dt=145.152000, rms=0.606 (0.080%), neg=0, invalid=762
- 0216: dt=124.416000, rms=0.605 (0.151%), neg=0, invalid=762
- 0217: dt=36.288000, rms=0.605 (0.041%), neg=0, invalid=762
- 0218: dt=36.288000, rms=0.604 (0.025%), neg=0, invalid=762
- 0219: dt=36.288000, rms=0.604 (0.042%), neg=0, invalid=762
- 0220: dt=36.288000, rms=0.604 (0.070%), neg=0, invalid=762
- 0221: dt=36.288000, rms=0.603 (0.100%), neg=0, invalid=762
- 0222: dt=36.288000, rms=0.602 (0.114%), neg=0, invalid=762
- 0223: dt=36.288000, rms=0.602 (0.117%), neg=0, invalid=762
- 0224: dt=36.288000, rms=0.601 (0.118%), neg=0, invalid=762
- 0225: dt=36.288000, rms=0.600 (0.117%), neg=0, invalid=762
- 0226: dt=36.288000, rms=0.600 (0.117%), neg=0, invalid=762
- 0227: dt=36.288000, rms=0.599 (0.125%), neg=0, invalid=762
- 0228: dt=36.288000, rms=0.599 (0.023%), neg=0, invalid=762
- 0229: dt=36.288000, rms=0.599 (0.035%), neg=0, invalid=762
- 0230: dt=36.288000, rms=0.598 (0.045%), neg=0, invalid=762
- 0231: dt=36.288000, rms=0.598 (0.050%), neg=0, invalid=762
- 0232: dt=36.288000, rms=0.598 (0.012%), neg=0, invalid=762
- 0233: dt=36.288000, rms=0.598 (0.014%), neg=0, invalid=762
- 0234: dt=18.144000, rms=0.598 (0.007%), neg=0, invalid=762
- 0235: dt=9.072000, rms=0.598 (0.004%), neg=0, invalid=762
- 0236: dt=1.134000, rms=0.598 (0.000%), neg=0, invalid=762
- 0237: dt=0.283500, rms=0.598 (0.000%), neg=0, invalid=762
- 0238: dt=0.141750, rms=0.598 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.598, neg=0, invalid=762
- 0239: dt=145.152000, rms=0.595 (0.618%), neg=0, invalid=762
- 0240: dt=68.855172, rms=0.594 (0.162%), neg=0, invalid=762
- 0241: dt=103.680000, rms=0.593 (0.089%), neg=0, invalid=762
- 0242: dt=36.288000, rms=0.593 (0.090%), neg=0, invalid=762
- 0243: dt=497.664000, rms=0.591 (0.296%), neg=0, invalid=762
- 0244: dt=36.288000, rms=0.590 (0.153%), neg=0, invalid=762
- 0245: dt=145.152000, rms=0.589 (0.093%), neg=0, invalid=762
- 0246: dt=36.288000, rms=0.589 (0.032%), neg=0, invalid=762
- 0247: dt=36.288000, rms=0.589 (0.022%), neg=0, invalid=762
- 0248: dt=36.288000, rms=0.589 (0.036%), neg=0, invalid=762
- 0249: dt=36.288000, rms=0.589 (0.050%), neg=0, invalid=762
- 0250: dt=36.288000, rms=0.588 (0.068%), neg=0, invalid=762
- 0251: dt=36.288000, rms=0.588 (0.079%), neg=0, invalid=762
- 0252: dt=36.288000, rms=0.587 (0.081%), neg=0, invalid=762
- 0253: dt=36.288000, rms=0.587 (0.086%), neg=0, invalid=762
- 0254: dt=36.288000, rms=0.586 (0.087%), neg=0, invalid=762
- 0255: dt=36.288000, rms=0.586 (0.084%), neg=0, invalid=762
- 0256: dt=36.288000, rms=0.585 (0.083%), neg=0, invalid=762
- 0257: dt=36.288000, rms=0.585 (0.088%), neg=0, invalid=762
- 0258: dt=36.288000, rms=0.584 (0.089%), neg=0, invalid=762
- 0259: dt=36.288000, rms=0.584 (0.091%), neg=0, invalid=762
- 0260: dt=36.288000, rms=0.584 (0.010%), neg=0, invalid=762
- 0261: dt=36.288000, rms=0.584 (0.019%), neg=0, invalid=762
- 0262: dt=36.288000, rms=0.584 (0.015%), neg=0, invalid=762
- 0263: dt=9.072000, rms=0.584 (0.000%), neg=0, invalid=762
- 0264: dt=9.072000, rms=0.583 (0.003%), neg=0, invalid=762
- 0265: dt=0.567000, rms=0.583 (-0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.591, neg=0, invalid=762
- 0266: dt=58.838710, rms=0.584 (1.114%), neg=0, invalid=762
- 0267: dt=2.800000, rms=0.583 (0.123%), neg=0, invalid=762
- 0268: dt=0.175000, rms=0.583 (0.007%), neg=0, invalid=762
- 0269: dt=0.087500, rms=0.583 (0.004%), neg=0, invalid=762
- 0270: dt=0.021875, rms=0.583 (0.001%), neg=0, invalid=762
- 0271: dt=0.005469, rms=0.583 (0.000%), neg=0, invalid=762
- 0272: dt=0.000684, rms=0.583 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.584, neg=0, invalid=762
- 0273: dt=37.403818, rms=0.576 (1.288%), neg=0, invalid=762
- 0274: dt=0.175000, rms=0.576 (0.010%), neg=0, invalid=762
- 0275: dt=0.175000, rms=0.576 (0.008%), neg=0, invalid=762
- 0276: dt=0.087500, rms=0.576 (0.004%), neg=0, invalid=762
- 0277: dt=0.043750, rms=0.576 (0.002%), neg=0, invalid=762
- 0278: dt=0.010937, rms=0.576 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.596, neg=0, invalid=762
- 0279: dt=0.000984, rms=0.595 (0.103%), neg=0, invalid=762
- 0280: dt=0.000176, rms=0.595 (0.000%), neg=0, invalid=762
- 0281: dt=0.000005, rms=0.595 (0.000%), neg=0, invalid=762
- 0282: dt=0.000003, rms=0.595 (0.000%), neg=0, invalid=762
- 0283: dt=0.000003, rms=0.595 (0.000%), neg=0, invalid=762
- 0284: dt=0.000003, rms=0.595 (0.000%), neg=0, invalid=762
- 0285: dt=0.000003, rms=0.595 (0.000%), neg=0, invalid=762
- 0286: dt=0.000003, rms=0.595 (0.000%), neg=0, invalid=762
- 0287: dt=0.000000, rms=0.595 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.596, neg=0, invalid=762
- 0288: dt=0.000000, rms=0.595 (0.103%), neg=0, invalid=762
- 0289: dt=0.000000, rms=0.595 (0.000%), neg=0, invalid=762
- 0290: dt=0.000002, rms=0.595 (0.000%), neg=0, invalid=762
- 0291: dt=0.000000, rms=0.595 (0.000%), neg=0, invalid=762
- 0292: dt=0.000000, rms=0.595 (0.000%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.634, neg=0, invalid=762
- 0293: dt=5.120000, rms=0.608 (4.032%), neg=0, invalid=762
- 0294: dt=0.000000, rms=0.608 (-0.000%), neg=0, invalid=762
- 0295: dt=0.100000, rms=0.608 (-0.005%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.609, neg=0, invalid=762
- 0296: dt=1.971429, rms=0.606 (0.379%), neg=0, invalid=762
- 0297: dt=2.375000, rms=0.604 (0.284%), neg=0, invalid=762
- 0298: dt=6.144000, rms=0.602 (0.400%), neg=0, invalid=762
- 0299: dt=1.792000, rms=0.602 (0.065%), neg=0, invalid=762
- 0300: dt=1.792000, rms=0.601 (0.060%), neg=0, invalid=762
- 0301: dt=5.120000, rms=0.601 (0.129%), neg=0, invalid=762
- 0302: dt=7.168000, rms=0.600 (0.051%), neg=0, invalid=762
- 0303: dt=1.792000, rms=0.600 (0.012%), neg=0, invalid=762
- 0304: dt=1.792000, rms=0.600 (0.014%), neg=0, invalid=762
- 0305: dt=1.792000, rms=0.600 (0.024%), neg=0, invalid=762
- 0306: dt=1.792000, rms=0.600 (0.037%), neg=0, invalid=762
- 0307: dt=1.792000, rms=0.600 (0.029%), neg=0, invalid=762
- 0308: dt=1.792000, rms=0.600 (-0.006%), neg=0, invalid=762
- 0309: dt=0.000000, rms=0.600 (0.000%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.584, neg=0, invalid=762
- 0310: dt=0.448000, rms=0.568 (2.831%), neg=0, invalid=762
- 0311: dt=0.448000, rms=0.563 (0.881%), neg=0, invalid=762
- 0312: dt=0.448000, rms=0.560 (0.508%), neg=0, invalid=762
- 0313: dt=0.448000, rms=0.558 (0.345%), neg=0, invalid=762
- 0314: dt=0.448000, rms=0.557 (0.262%), neg=0, invalid=762
- 0315: dt=0.694444, rms=0.555 (0.314%), neg=0, invalid=762
- 0316: dt=0.541667, rms=0.554 (0.180%), neg=0, invalid=762
- 0317: dt=0.448000, rms=0.553 (0.119%), neg=0, invalid=762
- 0318: dt=0.448000, rms=0.553 (0.104%), neg=0, invalid=762
- 0319: dt=0.448000, rms=0.552 (0.089%), neg=0, invalid=762
- 0320: dt=0.448000, rms=0.552 (0.080%), neg=0, invalid=762
- 0321: dt=0.448000, rms=0.551 (0.068%), neg=0, invalid=762
- 0322: dt=0.448000, rms=0.551 (0.063%), neg=0, invalid=762
- 0323: dt=0.448000, rms=0.551 (0.055%), neg=0, invalid=762
- 0324: dt=0.448000, rms=0.550 (0.052%), neg=0, invalid=762
- 0325: dt=0.448000, rms=0.550 (0.042%), neg=0, invalid=762
- 0326: dt=0.448000, rms=0.550 (0.042%), neg=0, invalid=762
- 0327: dt=0.448000, rms=0.549 (0.072%), neg=0, invalid=762
- 0328: dt=0.448000, rms=0.549 (0.091%), neg=0, invalid=762
- 0329: dt=0.448000, rms=0.548 (0.102%), neg=0, invalid=762
- 0330: dt=0.448000, rms=0.548 (0.098%), neg=0, invalid=762
- 0331: dt=0.448000, rms=0.547 (0.084%), neg=0, invalid=762
- 0332: dt=0.448000, rms=0.547 (0.071%), neg=0, invalid=762
- 0333: dt=0.448000, rms=0.547 (0.054%), neg=0, invalid=762
- 0334: dt=0.448000, rms=0.547 (0.038%), neg=0, invalid=762
- 0335: dt=0.448000, rms=0.546 (0.019%), neg=0, invalid=762
- 0336: dt=0.448000, rms=0.546 (0.008%), neg=0, invalid=762
- 0337: dt=0.000000, rms=0.546 (0.003%), neg=0, invalid=762
- 0338: dt=0.050000, rms=0.546 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.547, neg=0, invalid=762
- 0339: dt=0.448000, rms=0.540 (1.307%), neg=0, invalid=762
- 0340: dt=0.527778, rms=0.539 (0.186%), neg=0, invalid=762
- 0341: dt=0.448000, rms=0.539 (0.026%), neg=0, invalid=762
- 0342: dt=0.448000, rms=0.539 (-0.009%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- ********************* ALLOWING NEGATIVE NODES IN DEFORMATION********************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.535, neg=0, invalid=762
- 0343: dt=0.000000, rms=0.535 (0.122%), neg=0, invalid=762
- 0344: dt=0.000000, rms=0.535 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.535, neg=0, invalid=762
- 0345: dt=129.472000, rms=0.534 (0.191%), neg=0, invalid=762
- 0346: dt=55.488000, rms=0.534 (0.033%), neg=0, invalid=762
- 0347: dt=55.488000, rms=0.534 (0.022%), neg=0, invalid=762
- 0348: dt=55.488000, rms=0.534 (0.024%), neg=0, invalid=762
- 0349: dt=55.488000, rms=0.534 (0.033%), neg=0, invalid=762
- 0350: dt=55.488000, rms=0.534 (0.030%), neg=0, invalid=762
- 0351: dt=55.488000, rms=0.533 (0.031%), neg=0, invalid=762
- 0352: dt=55.488000, rms=0.533 (0.028%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.534, neg=0, invalid=762
- 0353: dt=25.920000, rms=0.533 (0.205%), neg=0, invalid=762
- 0354: dt=15.552000, rms=0.533 (0.020%), neg=0, invalid=762
- 0355: dt=15.552000, rms=0.533 (0.005%), neg=0, invalid=762
- 0356: dt=15.552000, rms=0.533 (-0.024%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.533, neg=0, invalid=762
- 0357: dt=80.347826, rms=0.530 (0.554%), neg=0, invalid=762
- 0358: dt=36.288000, rms=0.530 (0.172%), neg=0, invalid=762
- 0359: dt=36.288000, rms=0.529 (0.095%), neg=0, invalid=762
- 0360: dt=36.288000, rms=0.528 (0.139%), neg=0, invalid=762
- 0361: dt=36.288000, rms=0.527 (0.191%), neg=0, invalid=762
- 0362: dt=36.288000, rms=0.526 (0.177%), neg=0, invalid=762
- 0363: dt=36.288000, rms=0.525 (0.166%), neg=0, invalid=762
- 0364: dt=36.288000, rms=0.525 (0.124%), neg=0, invalid=762
- 0365: dt=36.288000, rms=0.524 (0.128%), neg=0, invalid=762
- 0366: dt=36.288000, rms=0.524 (0.090%), neg=0, invalid=762
- 0367: dt=36.288000, rms=0.523 (0.099%), neg=0, invalid=762
- 0368: dt=36.288000, rms=0.523 (0.068%), neg=0, invalid=762
- 0369: dt=36.288000, rms=0.523 (0.030%), neg=0, invalid=762
- 0370: dt=36.288000, rms=0.523 (0.023%), neg=0, invalid=762
- 0371: dt=36.288000, rms=0.522 (0.037%), neg=0, invalid=762
- 0372: dt=36.288000, rms=0.522 (0.051%), neg=0, invalid=762
- 0373: dt=36.288000, rms=0.522 (0.047%), neg=0, invalid=762
- 0374: dt=36.288000, rms=0.522 (0.060%), neg=0, invalid=762
- 0375: dt=36.288000, rms=0.521 (0.049%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.523, neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0376: dt=21.139896, rms=0.520 (0.444%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0377: dt=32.000000, rms=0.519 (0.233%), neg=0, invalid=762
- iter 0, gcam->neg = 4
- after 7 iterations, nbhd size=1, neg = 0
- 0378: dt=32.000000, rms=0.518 (0.206%), neg=0, invalid=762
- iter 0, gcam->neg = 11
- after 10 iterations, nbhd size=1, neg = 0
- 0379: dt=32.000000, rms=0.516 (0.327%), neg=0, invalid=762
- iter 0, gcam->neg = 34
- after 9 iterations, nbhd size=1, neg = 0
- 0380: dt=32.000000, rms=0.515 (0.271%), neg=0, invalid=762
- iter 0, gcam->neg = 52
- after 10 iterations, nbhd size=1, neg = 0
- 0381: dt=32.000000, rms=0.513 (0.333%), neg=0, invalid=762
- iter 0, gcam->neg = 55
- after 12 iterations, nbhd size=1, neg = 0
- 0382: dt=32.000000, rms=0.511 (0.394%), neg=0, invalid=762
- iter 0, gcam->neg = 50
- after 10 iterations, nbhd size=1, neg = 0
- 0383: dt=32.000000, rms=0.509 (0.457%), neg=0, invalid=762
- iter 0, gcam->neg = 39
- after 9 iterations, nbhd size=1, neg = 0
- 0384: dt=32.000000, rms=0.507 (0.386%), neg=0, invalid=762
- iter 0, gcam->neg = 38
- after 11 iterations, nbhd size=1, neg = 0
- 0385: dt=32.000000, rms=0.505 (0.299%), neg=0, invalid=762
- iter 0, gcam->neg = 41
- after 11 iterations, nbhd size=1, neg = 0
- 0386: dt=32.000000, rms=0.504 (0.251%), neg=0, invalid=762
- iter 0, gcam->neg = 31
- after 13 iterations, nbhd size=1, neg = 0
- 0387: dt=32.000000, rms=0.503 (0.164%), neg=0, invalid=762
- iter 0, gcam->neg = 34
- after 14 iterations, nbhd size=1, neg = 0
- 0388: dt=32.000000, rms=0.503 (0.153%), neg=0, invalid=762
- iter 0, gcam->neg = 34
- after 12 iterations, nbhd size=1, neg = 0
- 0389: dt=32.000000, rms=0.502 (0.152%), neg=0, invalid=762
- iter 0, gcam->neg = 33
- after 12 iterations, nbhd size=1, neg = 0
- 0390: dt=32.000000, rms=0.501 (0.170%), neg=0, invalid=762
- iter 0, gcam->neg = 20
- after 14 iterations, nbhd size=1, neg = 0
- 0391: dt=32.000000, rms=0.500 (0.166%), neg=0, invalid=762
- iter 0, gcam->neg = 11
- after 11 iterations, nbhd size=1, neg = 0
- 0392: dt=32.000000, rms=0.500 (0.110%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 3 iterations, nbhd size=0, neg = 0
- 0393: dt=32.000000, rms=0.499 (0.148%), neg=0, invalid=762
- iter 0, gcam->neg = 8
- after 8 iterations, nbhd size=1, neg = 0
- 0394: dt=32.000000, rms=0.498 (0.181%), neg=0, invalid=762
- iter 0, gcam->neg = 16
- after 8 iterations, nbhd size=1, neg = 0
- 0395: dt=32.000000, rms=0.497 (0.137%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 5 iterations, nbhd size=0, neg = 0
- 0396: dt=32.000000, rms=0.497 (0.120%), neg=0, invalid=762
- iter 0, gcam->neg = 18
- after 16 iterations, nbhd size=1, neg = 0
- 0397: dt=32.000000, rms=0.496 (0.085%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 0 iterations, nbhd size=0, neg = 0
- 0398: dt=25.600000, rms=0.496 (0.139%), neg=0, invalid=762
- 0399: dt=25.600000, rms=0.495 (0.077%), neg=0, invalid=762
- 0400: dt=25.600000, rms=0.495 (0.004%), neg=0, invalid=762
- iter 0, gcam->neg = 2
- after 1 iterations, nbhd size=0, neg = 0
- 0401: dt=25.600000, rms=0.495 (0.091%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 7 iterations, nbhd size=1, neg = 0
- 0402: dt=25.600000, rms=0.495 (0.027%), neg=0, invalid=762
- 0403: dt=25.600000, rms=0.494 (0.048%), neg=0, invalid=762
- 0404: dt=25.600000, rms=0.494 (-0.036%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.495, neg=0, invalid=762
- 0405: dt=38.400000, rms=0.491 (0.803%), neg=0, invalid=762
- 0406: dt=25.600000, rms=0.490 (0.274%), neg=0, invalid=762
- 0407: dt=25.371429, rms=0.489 (0.132%), neg=0, invalid=762
- 0408: dt=25.371429, rms=0.488 (0.133%), neg=0, invalid=762
- 0409: dt=25.371429, rms=0.487 (0.176%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0410: dt=25.371429, rms=0.487 (0.112%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0411: dt=25.371429, rms=0.486 (0.126%), neg=0, invalid=762
- 0412: dt=25.371429, rms=0.486 (0.027%), neg=0, invalid=762
- 0413: dt=25.371429, rms=0.486 (0.061%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 2 iterations, nbhd size=0, neg = 0
- 0414: dt=25.371429, rms=0.486 (-0.039%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0415: dt=19.200000, rms=0.485 (0.074%), neg=0, invalid=762
- 0416: dt=25.600000, rms=0.485 (0.072%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.500, neg=0, invalid=762
- 0417: dt=1.250000, rms=0.499 (0.123%), neg=0, invalid=762
- 0418: dt=0.063000, rms=0.499 (0.005%), neg=0, invalid=762
- 0419: dt=0.063000, rms=0.499 (0.000%), neg=0, invalid=762
- 0420: dt=0.063000, rms=0.499 (0.000%), neg=0, invalid=762
- 0421: dt=0.063000, rms=0.499 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.500, neg=0, invalid=762
- 0422: dt=3.456000, rms=0.499 (0.187%), neg=0, invalid=762
- 0423: dt=1.008000, rms=0.499 (0.014%), neg=0, invalid=762
- 0424: dt=1.008000, rms=0.499 (0.004%), neg=0, invalid=762
- 0425: dt=1.008000, rms=0.499 (-0.004%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.521, neg=0, invalid=762
- 0426: dt=1.280000, rms=0.518 (0.497%), neg=0, invalid=762
- 0427: dt=0.448000, rms=0.518 (0.025%), neg=0, invalid=762
- 0428: dt=0.448000, rms=0.518 (-0.005%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.519, neg=0, invalid=762
- 0429: dt=1.792000, rms=0.516 (0.513%), neg=0, invalid=762
- 0430: dt=1.280000, rms=0.516 (0.068%), neg=0, invalid=762
- 0431: dt=1.280000, rms=0.516 (0.017%), neg=0, invalid=762
- 0432: dt=1.280000, rms=0.516 (-0.117%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.504, neg=0, invalid=762
- iter 0, gcam->neg = 766
- after 12 iterations, nbhd size=1, neg = 0
- 0433: dt=2.412888, rms=0.469 (6.841%), neg=0, invalid=762
- 0434: dt=0.112000, rms=0.468 (0.168%), neg=0, invalid=762
- 0435: dt=0.112000, rms=0.468 (-0.017%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.469, neg=0, invalid=762
- 0436: dt=0.112000, rms=0.468 (0.321%), neg=0, invalid=762
- 0437: dt=0.048000, rms=0.468 (0.014%), neg=0, invalid=762
- 0438: dt=0.048000, rms=0.468 (-0.008%), neg=0, invalid=762
- label assignment complete, 0 changed (0.00%)
- label assignment complete, 0 changed (0.00%)
- ***************** morphing with label term set to 0 *******************************
- **************** pass 1 of 1 ************************
- enabling zero nodes
- setting smoothness coefficient to 0.008
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.452, neg=0, invalid=762
- 0439: dt=0.000000, rms=0.452 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.452, neg=0, invalid=762
- 0440: dt=129.472000, rms=0.452 (0.046%), neg=0, invalid=762
- 0441: dt=55.488000, rms=0.452 (0.005%), neg=0, invalid=762
- 0442: dt=55.488000, rms=0.452 (0.004%), neg=0, invalid=762
- 0443: dt=55.488000, rms=0.452 (0.006%), neg=0, invalid=762
- 0444: dt=55.488000, rms=0.452 (0.006%), neg=0, invalid=762
- 0445: dt=55.488000, rms=0.452 (0.006%), neg=0, invalid=762
- 0446: dt=55.488000, rms=0.452 (0.005%), neg=0, invalid=762
- setting smoothness coefficient to 0.031
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.452, neg=0, invalid=762
- 0447: dt=0.001898, rms=0.452 (0.000%), neg=0, invalid=762
- 0448: dt=0.000000, rms=0.452 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.452, neg=0, invalid=762
- 0449: dt=145.152000, rms=0.451 (0.212%), neg=0, invalid=762
- 0450: dt=145.152000, rms=0.451 (0.119%), neg=0, invalid=762
- 0451: dt=145.152000, rms=0.451 (-0.165%), neg=0, invalid=762
- setting smoothness coefficient to 0.118
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.451, neg=0, invalid=762
- 0452: dt=11.200000, rms=0.451 (0.171%), neg=0, invalid=762
- 0453: dt=9.600000, rms=0.450 (0.040%), neg=0, invalid=762
- 0454: dt=9.600000, rms=0.450 (0.006%), neg=0, invalid=762
- 0455: dt=9.600000, rms=0.450 (-0.088%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.450, neg=0, invalid=762
- 0456: dt=38.400000, rms=0.446 (0.891%), neg=0, invalid=762
- 0457: dt=30.457831, rms=0.445 (0.388%), neg=0, invalid=762
- 0458: dt=38.400000, rms=0.443 (0.298%), neg=0, invalid=762
- 0459: dt=25.600000, rms=0.442 (0.211%), neg=0, invalid=762
- 0460: dt=25.600000, rms=0.442 (0.162%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0461: dt=25.600000, rms=0.441 (0.219%), neg=0, invalid=762
- iter 0, gcam->neg = 3
- after 1 iterations, nbhd size=0, neg = 0
- 0462: dt=25.600000, rms=0.439 (0.303%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 8 iterations, nbhd size=1, neg = 0
- 0463: dt=25.600000, rms=0.438 (0.248%), neg=0, invalid=762
- iter 0, gcam->neg = 5
- after 10 iterations, nbhd size=1, neg = 0
- 0464: dt=25.600000, rms=0.437 (0.282%), neg=0, invalid=762
- iter 0, gcam->neg = 7
- after 10 iterations, nbhd size=1, neg = 0
- 0465: dt=25.600000, rms=0.436 (0.231%), neg=0, invalid=762
- iter 0, gcam->neg = 10
- after 8 iterations, nbhd size=1, neg = 0
- 0466: dt=25.600000, rms=0.435 (0.213%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 10 iterations, nbhd size=1, neg = 0
- 0467: dt=25.600000, rms=0.434 (0.171%), neg=0, invalid=762
- iter 0, gcam->neg = 8
- after 11 iterations, nbhd size=1, neg = 0
- 0468: dt=25.600000, rms=0.434 (0.109%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 8 iterations, nbhd size=1, neg = 0
- 0469: dt=25.600000, rms=0.433 (0.163%), neg=0, invalid=762
- iter 0, gcam->neg = 9
- after 8 iterations, nbhd size=1, neg = 0
- 0470: dt=25.600000, rms=0.433 (0.103%), neg=0, invalid=762
- iter 0, gcam->neg = 6
- after 8 iterations, nbhd size=1, neg = 0
- 0471: dt=25.600000, rms=0.432 (0.099%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 6 iterations, nbhd size=1, neg = 0
- 0472: dt=38.400000, rms=0.432 (0.007%), neg=0, invalid=762
- 0473: dt=38.400000, rms=0.432 (0.019%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 1 iterations, nbhd size=0, neg = 0
- 0474: dt=38.400000, rms=0.432 (0.012%), neg=0, invalid=762
- iter 0, gcam->neg = 1
- after 0 iterations, nbhd size=0, neg = 0
- 0475: dt=38.400000, rms=0.432 (-0.001%), neg=0, invalid=762
- setting smoothness coefficient to 0.400
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.438, neg=0, invalid=762
- 0476: dt=0.000113, rms=0.438 (0.000%), neg=0, invalid=762
- 0477: dt=0.000000, rms=0.438 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.438, neg=0, invalid=762
- 0478: dt=1.008000, rms=0.438 (0.003%), neg=0, invalid=762
- 0479: dt=0.252000, rms=0.438 (0.000%), neg=0, invalid=762
- 0480: dt=0.252000, rms=0.438 (0.000%), neg=0, invalid=762
- 0481: dt=0.252000, rms=0.438 (-0.001%), neg=0, invalid=762
- setting smoothness coefficient to 1.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.451, neg=0, invalid=762
- 0482: dt=0.000000, rms=0.451 (0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.451, neg=0, invalid=762
- 0483: dt=0.448000, rms=0.451 (0.038%), neg=0, invalid=762
- 0484: dt=0.096000, rms=0.451 (0.001%), neg=0, invalid=762
- 0485: dt=0.096000, rms=0.451 (-0.001%), neg=0, invalid=762
- resetting metric properties...
- setting smoothness coefficient to 2.000
- blurring input image with Gaussian with sigma=2.000...
- 0000: dt=0.000, rms=0.432, neg=0, invalid=762
- iter 0, gcam->neg = 574
- after 14 iterations, nbhd size=1, neg = 0
- 0486: dt=1.428571, rms=0.420 (2.718%), neg=0, invalid=762
- 0487: dt=0.000013, rms=0.420 (0.000%), neg=0, invalid=762
- 0488: dt=0.000013, rms=0.420 (-0.000%), neg=0, invalid=762
- blurring input image with Gaussian with sigma=0.500...
- 0000: dt=0.000, rms=0.420, neg=0, invalid=762
- 0489: dt=0.112000, rms=0.420 (0.100%), neg=0, invalid=762
- 0490: dt=0.080000, rms=0.420 (0.022%), neg=0, invalid=762
- 0491: dt=0.080000, rms=0.420 (0.003%), neg=0, invalid=762
- 0492: dt=0.080000, rms=0.420 (-0.050%), neg=0, invalid=762
- writing output transformation to transforms/talairach.m3z...
- GCAMwrite
- mri_ca_register took 2 hours, 15 minutes and 3 seconds.
- mri_ca_register utimesec 8994.414641
- mri_ca_register stimesec 7.372879
- mri_ca_register ru_maxrss 1338532
- mri_ca_register ru_ixrss 0
- mri_ca_register ru_idrss 0
- mri_ca_register ru_isrss 0
- mri_ca_register ru_minflt 3968527
- mri_ca_register ru_majflt 0
- mri_ca_register ru_nswap 0
- mri_ca_register ru_inblock 0
- mri_ca_register ru_oublock 63520
- mri_ca_register ru_msgsnd 0
- mri_ca_register ru_msgrcv 0
- mri_ca_register ru_nsignals 0
- mri_ca_register ru_nvcsw 3721
- mri_ca_register ru_nivcsw 29663
- FSRUNTIME@ mri_ca_register 2.2508 hours 2 threads
- #--------------------------------------
- #@# SubCort Seg Sat Oct 7 20:50:50 CEST 2017
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- sysname Linux
- hostname tars-925
- machine x86_64
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz
- == Number of threads available to mri_ca_label for OpenMP = 2 ==
- relabeling unlikely voxels with window_size = 9 and prior threshold 0.30
- using Gibbs prior factor = 0.500
- renormalizing sequences with structure alignment, equivalent to:
- -renormalize
- -renormalize_mean 0.500
- -regularize 0.500
- reading 1 input volumes
- reading classifier array from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- reading input volume from norm.mgz
- average std[0] = 7.3
- reading transform from transforms/talairach.m3z
- setting orig areas to linear transform determinant scaled 7.09
- Atlas used for the 3D morph was /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- average std = 7.3 using min determinant for regularization = 5.3
- 0 singular and 0 ill-conditioned covariance matrices regularized
- labeling volume...
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.16259 (20)
- mri peak = 0.13685 (20)
- Left_Lateral_Ventricle (4): linear fit = 0.88 x + 0.0 (475 voxels, overlap=0.929)
- Left_Lateral_Ventricle (4): linear fit = 0.88 x + 0.0 (475 voxels, peak = 18), gca=17.7
- gca peak = 0.17677 (13)
- mri peak = 0.09577 (21)
- Right_Lateral_Ventricle (43): linear fit = 1.27 x + 0.0 (883 voxels, overlap=0.714)
- Right_Lateral_Ventricle (43): linear fit = 1.27 x + 0.0 (883 voxels, peak = 17), gca=16.6
- gca peak = 0.28129 (95)
- mri peak = 0.11621 (91)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (698 voxels, overlap=0.738)
- Right_Pallidum (52): linear fit = 0.96 x + 0.0 (698 voxels, peak = 92), gca=91.7
- gca peak = 0.16930 (96)
- mri peak = 0.09162 (93)
- Left_Pallidum (13): linear fit = 0.99 x + 0.0 (702 voxels, overlap=0.877)
- Left_Pallidum (13): linear fit = 0.99 x + 0.0 (702 voxels, peak = 95), gca=94.6
- gca peak = 0.24553 (55)
- mri peak = 0.07919 (60)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (839 voxels, overlap=1.008)
- Right_Hippocampus (53): linear fit = 1.04 x + 0.0 (839 voxels, peak = 57), gca=57.5
- gca peak = 0.30264 (59)
- mri peak = 0.08561 (61)
- Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (938 voxels, overlap=1.010)
- Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (938 voxels, peak = 63), gca=63.4
- gca peak = 0.07580 (103)
- mri peak = 0.08545 (105)
- Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (40669 voxels, overlap=0.693)
- Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (40669 voxels, peak = 106), gca=105.6
- gca peak = 0.07714 (104)
- mri peak = 0.08342 (106)
- Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (42908 voxels, overlap=0.659)
- Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (42908 voxels, peak = 108), gca=107.6
- gca peak = 0.09712 (58)
- mri peak = 0.04737 (63)
- Left_Cerebral_Cortex (3): linear fit = 1.04 x + 0.0 (30048 voxels, overlap=0.967)
- Left_Cerebral_Cortex (3): linear fit = 1.04 x + 0.0 (30048 voxels, peak = 61), gca=60.6
- gca peak = 0.11620 (58)
- mri peak = 0.04503 (59)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (30008 voxels, overlap=0.977)
- Right_Cerebral_Cortex (42): linear fit = 1.02 x + 0.0 (30008 voxels, peak = 59), gca=59.4
- gca peak = 0.30970 (66)
- mri peak = 0.09551 (75)
- Right_Caudate (50): linear fit = 1.10 x + 0.0 (1050 voxels, overlap=0.602)
- Right_Caudate (50): linear fit = 1.10 x + 0.0 (1050 voxels, peak = 72), gca=72.3
- gca peak = 0.15280 (69)
- mri peak = 0.10515 (75)
- Left_Caudate (11): linear fit = 1.04 x + 0.0 (899 voxels, overlap=0.925)
- Left_Caudate (11): linear fit = 1.04 x + 0.0 (899 voxels, peak = 72), gca=72.1
- gca peak = 0.13902 (56)
- mri peak = 0.04581 (55)
- Left_Cerebellum_Cortex (8): linear fit = 0.96 x + 0.0 (25487 voxels, overlap=0.999)
- Left_Cerebellum_Cortex (8): linear fit = 0.96 x + 0.0 (25487 voxels, peak = 54), gca=54.0
- gca peak = 0.14777 (55)
- mri peak = 0.04139 (52)
- Right_Cerebellum_Cortex (47): linear fit = 0.94 x + 0.0 (26597 voxels, overlap=0.988)
- Right_Cerebellum_Cortex (47): linear fit = 0.94 x + 0.0 (26597 voxels, peak = 52), gca=52.0
- gca peak = 0.16765 (84)
- mri peak = 0.08504 (85)
- Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (7667 voxels, overlap=0.960)
- Left_Cerebellum_White_Matter (7): linear fit = 1.01 x + 0.0 (7667 voxels, peak = 85), gca=85.3
- gca peak = 0.18739 (84)
- mri peak = 0.08615 (85)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (7637 voxels, overlap=0.983)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (7637 voxels, peak = 84), gca=84.0
- gca peak = 0.29869 (57)
- mri peak = 0.08727 (63)
- Left_Amygdala (18): linear fit = 1.12 x + 0.0 (552 voxels, overlap=0.984)
- Left_Amygdala (18): linear fit = 1.12 x + 0.0 (552 voxels, peak = 64), gca=63.6
- gca peak = 0.33601 (57)
- mri peak = 0.09202 (64)
- Right_Amygdala (54): linear fit = 1.10 x + 0.0 (534 voxels, overlap=0.998)
- Right_Amygdala (54): linear fit = 1.10 x + 0.0 (534 voxels, peak = 62), gca=62.4
- gca peak = 0.11131 (90)
- mri peak = 0.06193 (87)
- Left_Thalamus_Proper (10): linear fit = 1.01 x + 0.0 (4973 voxels, overlap=0.973)
- Left_Thalamus_Proper (10): linear fit = 1.01 x + 0.0 (4973 voxels, peak = 91), gca=91.3
- gca peak = 0.11793 (83)
- mri peak = 0.06392 (87)
- Right_Thalamus_Proper (49): linear fit = 1.02 x + 0.0 (4642 voxels, overlap=0.978)
- Right_Thalamus_Proper (49): linear fit = 1.02 x + 0.0 (4642 voxels, peak = 85), gca=85.1
- gca peak = 0.08324 (81)
- mri peak = 0.07219 (83)
- Left_Putamen (12): linear fit = 1.07 x + 0.0 (2110 voxels, overlap=0.706)
- Left_Putamen (12): linear fit = 1.07 x + 0.0 (2110 voxels, peak = 86), gca=86.3
- gca peak = 0.10360 (77)
- mri peak = 0.06820 (82)
- Right_Putamen (51): linear fit = 1.02 x + 0.0 (2254 voxels, overlap=0.844)
- Right_Putamen (51): linear fit = 1.02 x + 0.0 (2254 voxels, peak = 79), gca=78.9
- gca peak = 0.08424 (78)
- mri peak = 0.11047 (83)
- Brain_Stem (16): linear fit = 1.05 x + 0.0 (12226 voxels, overlap=0.476)
- Brain_Stem (16): linear fit = 1.05 x + 0.0 (12226 voxels, peak = 82), gca=82.3
- gca peak = 0.12631 (89)
- mri peak = 0.06555 (89)
- Right_VentralDC (60): linear fit = 1.07 x + 0.0 (1537 voxels, overlap=0.825)
- Right_VentralDC (60): linear fit = 1.07 x + 0.0 (1537 voxels, peak = 95), gca=94.8
- gca peak = 0.14500 (87)
- mri peak = 0.08016 (91)
- Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1449 voxels, overlap=0.893)
- Left_VentralDC (28): linear fit = 1.03 x + 0.0 (1449 voxels, peak = 90), gca=90.0
- gca peak = 0.14975 (24)
- mri peak = 0.02758 (14)
- gca peak = 0.19357 (14)
- mri peak = 0.14494 (16)
- Fourth_Ventricle (15): linear fit = 0.93 x + 0.0 (129 voxels, overlap=0.795)
- Fourth_Ventricle (15): linear fit = 0.93 x + 0.0 (129 voxels, peak = 13), gca=12.9
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.16825 (27)
- gca peak Left_Thalamus = 1.00000 (94)
- gca peak Third_Ventricle = 0.14975 (24)
- gca peak CSF = 0.23379 (36)
- gca peak Left_Accumbens_area = 0.70037 (62)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.75997 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.24655 (23)
- gca peak Right_Accumbens_area = 0.45042 (65)
- gca peak Right_vessel = 0.82168 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.65475 (32)
- gca peak WM_hypointensities = 0.07854 (76)
- gca peak non_WM_hypointensities = 0.08491 (43)
- gca peak Optic_Chiasm = 0.71127 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.07 x + 0.0
- estimating mean wm scale to be 1.03 x + 0.0
- estimating mean csf scale to be 1.03 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- renormalizing by structure alignment....
- renormalizing input #0
- gca peak = 0.20509 (18)
- mri peak = 0.13685 (20)
- Left_Lateral_Ventricle (4): linear fit = 1.18 x + 0.0 (475 voxels, overlap=0.983)
- Left_Lateral_Ventricle (4): linear fit = 1.18 x + 0.0 (475 voxels, peak = 21), gca=21.3
- gca peak = 0.15990 (16)
- mri peak = 0.09577 (21)
- Right_Lateral_Ventricle (43): linear fit = 1.10 x + 0.0 (883 voxels, overlap=0.694)
- Right_Lateral_Ventricle (43): linear fit = 1.10 x + 0.0 (883 voxels, peak = 18), gca=17.5
- gca peak = 0.26705 (90)
- mri peak = 0.11621 (91)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (698 voxels, overlap=1.012)
- Right_Pallidum (52): linear fit = 1.00 x + 0.0 (698 voxels, peak = 90), gca=89.6
- gca peak = 0.20278 (95)
- mri peak = 0.09162 (93)
- Left_Pallidum (13): linear fit = 1.00 x + 0.0 (702 voxels, overlap=1.012)
- Left_Pallidum (13): linear fit = 1.00 x + 0.0 (702 voxels, peak = 95), gca=94.5
- gca peak = 0.29069 (58)
- mri peak = 0.07919 (60)
- Right_Hippocampus (53): linear fit = 1.02 x + 0.0 (839 voxels, overlap=1.006)
- Right_Hippocampus (53): linear fit = 1.02 x + 0.0 (839 voxels, peak = 59), gca=59.4
- gca peak = 0.24587 (64)
- mri peak = 0.08561 (61)
- Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (938 voxels, overlap=1.010)
- Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (938 voxels, peak = 64), gca=64.0
- gca peak = 0.07615 (105)
- mri peak = 0.08545 (105)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (40669 voxels, overlap=0.790)
- Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (40669 voxels, peak = 104), gca=104.5
- gca peak = 0.07663 (108)
- mri peak = 0.08342 (106)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (42908 voxels, overlap=0.803)
- Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (42908 voxels, peak = 108), gca=108.0
- gca peak = 0.09233 (61)
- mri peak = 0.04737 (63)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (30048 voxels, overlap=0.987)
- Left_Cerebral_Cortex (3): linear fit = 1.02 x + 0.0 (30048 voxels, peak = 63), gca=62.5
- gca peak = 0.11322 (59)
- mri peak = 0.04503 (59)
- Right_Cerebral_Cortex (42): linear fit = 0.96 x + 0.0 (30008 voxels, overlap=0.982)
- Right_Cerebral_Cortex (42): linear fit = 0.96 x + 0.0 (30008 voxels, peak = 57), gca=56.9
- gca peak = 0.25613 (73)
- mri peak = 0.09551 (75)
- Right_Caudate (50): linear fit = 1.00 x + 0.0 (1050 voxels, overlap=1.005)
- Right_Caudate (50): linear fit = 1.00 x + 0.0 (1050 voxels, peak = 73), gca=73.0
- gca peak = 0.15386 (72)
- mri peak = 0.10515 (75)
- Left_Caudate (11): linear fit = 0.99 x + 0.0 (899 voxels, overlap=1.000)
- Left_Caudate (11): linear fit = 0.99 x + 0.0 (899 voxels, peak = 71), gca=70.9
- gca peak = 0.14774 (54)
- mri peak = 0.04581 (55)
- Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (25487 voxels, overlap=1.000)
- Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (25487 voxels, peak = 54), gca=54.0
- gca peak = 0.15473 (52)
- mri peak = 0.04139 (52)
- Right_Cerebellum_Cortex (47): linear fit = 0.96 x + 0.0 (26597 voxels, overlap=1.000)
- Right_Cerebellum_Cortex (47): linear fit = 0.96 x + 0.0 (26597 voxels, peak = 50), gca=50.2
- gca peak = 0.16137 (86)
- mri peak = 0.08504 (85)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (7667 voxels, overlap=0.979)
- Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (7667 voxels, peak = 86), gca=86.0
- gca peak = 0.18153 (84)
- mri peak = 0.08615 (85)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (7637 voxels, overlap=0.982)
- Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (7637 voxels, peak = 84), gca=84.0
- gca peak = 0.24255 (65)
- mri peak = 0.08727 (63)
- Left_Amygdala (18): linear fit = 1.00 x + 0.0 (552 voxels, overlap=1.016)
- Left_Amygdala (18): linear fit = 1.00 x + 0.0 (552 voxels, peak = 65), gca=65.0
- gca peak = 0.31291 (62)
- mri peak = 0.09202 (64)
- Right_Amygdala (54): linear fit = 1.00 x + 0.0 (534 voxels, overlap=1.014)
- Right_Amygdala (54): linear fit = 1.00 x + 0.0 (534 voxels, peak = 62), gca=62.0
- gca peak = 0.11873 (90)
- mri peak = 0.06193 (87)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4973 voxels, overlap=0.997)
- Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (4973 voxels, peak = 90), gca=89.6
- gca peak = 0.11391 (83)
- mri peak = 0.06392 (87)
- Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (4642 voxels, overlap=0.996)
- Right_Thalamus_Proper (49): linear fit = 0.99 x + 0.0 (4642 voxels, peak = 82), gca=81.8
- gca peak = 0.08593 (80)
- mri peak = 0.07219 (83)
- Left_Putamen (12): linear fit = 0.99 x + 0.0 (2110 voxels, overlap=0.846)
- Left_Putamen (12): linear fit = 0.99 x + 0.0 (2110 voxels, peak = 79), gca=78.8
- gca peak = 0.10144 (79)
- mri peak = 0.06820 (82)
- Right_Putamen (51): linear fit = 1.01 x + 0.0 (2254 voxels, overlap=0.918)
- Right_Putamen (51): linear fit = 1.01 x + 0.0 (2254 voxels, peak = 80), gca=80.2
- gca peak = 0.07588 (85)
- mri peak = 0.11047 (83)
- Brain_Stem (16): linear fit = 1.00 x + 0.0 (12226 voxels, overlap=0.676)
- Brain_Stem (16): linear fit = 1.00 x + 0.0 (12226 voxels, peak = 85), gca=84.6
- gca peak = 0.11525 (95)
- mri peak = 0.06555 (89)
- Right_VentralDC (60): linear fit = 0.99 x + 0.0 (1537 voxels, overlap=0.900)
- Right_VentralDC (60): linear fit = 0.99 x + 0.0 (1537 voxels, peak = 94), gca=93.6
- gca peak = 0.15655 (90)
- mri peak = 0.08016 (91)
- Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1449 voxels, overlap=0.933)
- Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1449 voxels, peak = 90), gca=89.6
- gca peak = 0.13197 (26)
- mri peak = 0.02758 (14)
- gca peak = 0.19357 (13)
- mri peak = 0.14494 (16)
- Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (129 voxels, overlap=0.843)
- Fourth_Ventricle (15): linear fit = 0.98 x + 0.0 (129 voxels, peak = 13), gca=12.7
- gca peak Unknown = 0.94835 ( 0)
- gca peak Left_Inf_Lat_Vent = 0.15020 (36)
- gca peak Left_Thalamus = 0.64095 (100)
- gca peak Third_Ventricle = 0.13197 (26)
- gca peak CSF = 0.23379 (37)
- gca peak Left_Accumbens_area = 0.73027 (65)
- gca peak Left_undetermined = 1.00000 (26)
- gca peak Left_vessel = 0.75962 (52)
- gca peak Left_choroid_plexus = 0.12089 (35)
- gca peak Right_Inf_Lat_Vent = 0.21972 (24)
- gca peak Right_Accumbens_area = 0.29961 (71)
- gca peak Right_vessel = 0.82168 (52)
- gca peak Right_choroid_plexus = 0.14516 (37)
- gca peak Fifth_Ventricle = 0.65475 (33)
- gca peak WM_hypointensities = 0.07266 (80)
- gca peak non_WM_hypointensities = 0.11678 (56)
- gca peak Optic_Chiasm = 0.70892 (75)
- not using caudate to estimate GM means
- estimating mean gm scale to be 1.00 x + 0.0
- estimating mean wm scale to be 1.00 x + 0.0
- estimating mean csf scale to be 1.09 x + 0.0
- saving intensity scales to aseg.auto_noCCseg.label_intensities.txt
- saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt
- 85377 voxels changed in iteration 0 of unlikely voxel relabeling
- 245 voxels changed in iteration 1 of unlikely voxel relabeling
- 23 voxels changed in iteration 2 of unlikely voxel relabeling
- 3 voxels changed in iteration 3 of unlikely voxel relabeling
- 0 voxels changed in iteration 4 of unlikely voxel relabeling
- 47332 gm and wm labels changed (%25 to gray, %75 to white out of all changed labels)
- 538 hippocampal voxels changed.
- 0 amygdala voxels changed.
- pass 1: 80051 changed. image ll: -2.141, PF=0.500
- pass 2: 22283 changed. image ll: -2.140, PF=0.500
- pass 3: 6692 changed.
- pass 4: 2435 changed.
- 50024 voxels changed in iteration 0 of unlikely voxel relabeling
- 220 voxels changed in iteration 1 of unlikely voxel relabeling
- 1 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- 6369 voxels changed in iteration 0 of unlikely voxel relabeling
- 57 voxels changed in iteration 1 of unlikely voxel relabeling
- 0 voxels changed in iteration 2 of unlikely voxel relabeling
- 5681 voxels changed in iteration 0 of unlikely voxel relabeling
- 65 voxels changed in iteration 1 of unlikely voxel relabeling
- 0 voxels changed in iteration 2 of unlikely voxel relabeling
- 5371 voxels changed in iteration 0 of unlikely voxel relabeling
- 23 voxels changed in iteration 1 of unlikely voxel relabeling
- 3 voxels changed in iteration 2 of unlikely voxel relabeling
- 0 voxels changed in iteration 3 of unlikely voxel relabeling
- MRItoUCHAR: min=0, max=85
- MRItoUCHAR: converting to UCHAR
- writing labeled volume to aseg.auto_noCCseg.mgz
- mri_ca_label utimesec 3774.163239
- mri_ca_label stimesec 1.606755
- mri_ca_label ru_maxrss 2126084
- mri_ca_label ru_ixrss 0
- mri_ca_label ru_idrss 0
- mri_ca_label ru_isrss 0
- mri_ca_label ru_minflt 767195
- mri_ca_label ru_majflt 0
- mri_ca_label ru_nswap 0
- mri_ca_label ru_inblock 0
- mri_ca_label ru_oublock 488
- mri_ca_label ru_msgsnd 0
- mri_ca_label ru_msgrcv 0
- mri_ca_label ru_nsignals 0
- mri_ca_label ru_nvcsw 299
- mri_ca_label ru_nivcsw 4861
- auto-labeling took 62 minutes and 11 seconds.
- mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/transforms/cc_up.lta 0050116
- will read input aseg from aseg.auto_noCCseg.mgz
- writing aseg with cc labels to aseg.auto.mgz
- will write lta as /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/transforms/cc_up.lta
- reading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aseg.auto_noCCseg.mgz
- reading norm from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/norm.mgz
- 93166 voxels in left wm, 68462 in right wm, xrange [120, 137]
- searching rotation angles z=[-5 9], y=[-1 13]
-
searching scale 1 Z rot -5.1
searching scale 1 Z rot -4.9
searching scale 1 Z rot -4.6
searching scale 1 Z rot -4.4
searching scale 1 Z rot -4.1
searching scale 1 Z rot -3.9
searching scale 1 Z rot -3.6
searching scale 1 Z rot -3.4
searching scale 1 Z rot -3.1
searching scale 1 Z rot -2.9
searching scale 1 Z rot -2.6
searching scale 1 Z rot -2.4
searching scale 1 Z rot -2.1
searching scale 1 Z rot -1.9
searching scale 1 Z rot -1.6
searching scale 1 Z rot -1.4
searching scale 1 Z rot -1.1
searching scale 1 Z rot -0.9
searching scale 1 Z rot -0.6
searching scale 1 Z rot -0.4
searching scale 1 Z rot -0.1
searching scale 1 Z rot 0.1
searching scale 1 Z rot 0.4
searching scale 1 Z rot 0.6
searching scale 1 Z rot 0.9
searching scale 1 Z rot 1.1
searching scale 1 Z rot 1.4
searching scale 1 Z rot 1.6
searching scale 1 Z rot 1.9
searching scale 1 Z rot 2.1
searching scale 1 Z rot 2.4
searching scale 1 Z rot 2.6
searching scale 1 Z rot 2.9
searching scale 1 Z rot 3.1
searching scale 1 Z rot 3.4
searching scale 1 Z rot 3.6
searching scale 1 Z rot 3.9
searching scale 1 Z rot 4.1
searching scale 1 Z rot 4.4
searching scale 1 Z rot 4.6
searching scale 1 Z rot 4.9
searching scale 1 Z rot 5.1
searching scale 1 Z rot 5.4
searching scale 1 Z rot 5.6
searching scale 1 Z rot 5.9
searching scale 1 Z rot 6.1
searching scale 1 Z rot 6.4
searching scale 1 Z rot 6.6
searching scale 1 Z rot 6.9
searching scale 1 Z rot 7.1
searching scale 1 Z rot 7.4
searching scale 1 Z rot 7.6
searching scale 1 Z rot 7.9
searching scale 1 Z rot 8.1
searching scale 1 Z rot 8.4
searching scale 1 Z rot 8.6 global minimum found at slice 127.4, rotations (5.59, 1.89)
- final transformation (x=127.4, yr=5.589, zr=1.890):
- 0.99471 -0.03298 0.09734 -5.34841;
- 0.03282 0.99946 0.00321 8.53732;
- -0.09739 0.00000 0.99525 33.91611;
- 0.00000 0.00000 0.00000 1.00000;
- updating x range to be [125, 130] in xformed coordinates
- best xformed slice 127
- cc center is found at 127 115 107
- eigenvectors:
- 0.00115 -0.00628 0.99998;
- -0.04370 -0.99903 -0.00623;
- 0.99904 -0.04369 -0.00143;
- writing aseg with callosum to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aseg.auto.mgz...
- corpus callosum segmentation took 1.8 minutes
- #--------------------------------------
- #@# Merge ASeg Sat Oct 7 21:54:51 CEST 2017
- cp aseg.auto.mgz aseg.presurf.mgz
- #--------------------------------------------
- #@# Intensity Normalization2 Sat Oct 7 21:54:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- using segmentation for initial intensity normalization
- using MR volume brainmask.mgz to mask input volume...
- reading from norm.mgz...
- Reading aseg aseg.presurf.mgz
- normalizing image...
- processing with aseg
- removing outliers in the aseg WM...
- 1657 control points removed
- Building bias image
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 0...
- Smoothing with sigma 8
- Applying bias correction
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Iterating 2 times
- ---------------------------------
- 3d normalization pass 1 of 2
- white matter peak found at 110
- white matter peak found at 109
- gm peak at 66 (66), valley at 21 (21)
- csf peak at 33, setting threshold to 55
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- ---------------------------------
- 3d normalization pass 2 of 2
- white matter peak found at 110
- white matter peak found at 110
- gm peak at 65 (65), valley at 23 (23)
- csf peak at 33, setting threshold to 54
- building Voronoi diagram...
- performing soap bubble smoothing, sigma = 8...
- Done iterating ---------------------------------
- writing output to brain.mgz
- 3D bias adjustment took 3 minutes and 5 seconds.
- #--------------------------------------------
- #@# Mask BFS Sat Oct 7 21:57:57 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz
- threshold mask volume at 5
- DoAbs = 0
- Found 1723182 voxels in mask (pct= 10.27)
- Writing masked volume to brain.finalsurfs.mgz...done.
- #--------------------------------------------
- #@# WM Segmentation Sat Oct 7 21:57:59 CEST 2017
- mri_segment -mprage brain.mgz wm.seg.mgz
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- computing class statistics for intensity windows...
- WM (105.0): 106.0 +- 5.6 [79.0 --> 125.0]
- GM (69.0) : 67.8 +- 9.5 [30.0 --> 95.0]
- setting bottom of white matter range to 77.3
- setting top of gray matter range to 86.8
- doing initial intensity segmentation...
- using local statistics to label ambiguous voxels...
- using local geometry to label remaining ambiguous voxels...
- reclassifying voxels using Gaussian border classifier...
- removing voxels with positive offset direction...
- smoothing T1 volume with sigma = 0.250
- removing 1-dimensional structures...
- 13513 sparsely connected voxels removed...
- thickening thin strands....
- 20 segments, 5059 filled
- 3307 bright non-wm voxels segmented.
- 5722 diagonally connected voxels added...
- white matter segmentation took 1.6 minutes
- writing output to wm.seg.mgz...
- assuming input volume is MGH (Van der Kouwe) MP-RAGE
- mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz
- preserving editing changes in input volume...
- auto filling took 0.50 minutes
- reading wm segmentation from wm.seg.mgz...
- 70 voxels added to wm to prevent paths from MTL structures to cortex
- 2429 additional wm voxels added
- 0 additional wm voxels added
- SEG EDIT: 39900 voxels turned on, 43187 voxels turned off.
- propagating editing to output volume from wm.seg.mgz
- 115,126,128 old 101 new 101
- 115,126,128 old 101 new 101
- writing edited volume to wm.asegedit.mgz....
- mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz
- Iteration Number : 1
- pass 1 (xy+): 22 found - 22 modified | TOTAL: 22
- pass 2 (xy+): 0 found - 22 modified | TOTAL: 22
- pass 1 (xy-): 29 found - 29 modified | TOTAL: 51
- pass 2 (xy-): 0 found - 29 modified | TOTAL: 51
- pass 1 (yz+): 28 found - 28 modified | TOTAL: 79
- pass 2 (yz+): 0 found - 28 modified | TOTAL: 79
- pass 1 (yz-): 25 found - 25 modified | TOTAL: 104
- pass 2 (yz-): 0 found - 25 modified | TOTAL: 104
- pass 1 (xz+): 20 found - 20 modified | TOTAL: 124
- pass 2 (xz+): 0 found - 20 modified | TOTAL: 124
- pass 1 (xz-): 18 found - 18 modified | TOTAL: 142
- pass 2 (xz-): 0 found - 18 modified | TOTAL: 142
- Iteration Number : 1
- pass 1 (+++): 55 found - 55 modified | TOTAL: 55
- pass 2 (+++): 0 found - 55 modified | TOTAL: 55
- pass 1 (+++): 55 found - 55 modified | TOTAL: 110
- pass 2 (+++): 0 found - 55 modified | TOTAL: 110
- pass 1 (+++): 29 found - 29 modified | TOTAL: 139
- pass 2 (+++): 0 found - 29 modified | TOTAL: 139
- pass 1 (+++): 58 found - 58 modified | TOTAL: 197
- pass 2 (+++): 0 found - 58 modified | TOTAL: 197
- Iteration Number : 1
- pass 1 (++): 225 found - 225 modified | TOTAL: 225
- pass 2 (++): 0 found - 225 modified | TOTAL: 225
- pass 1 (+-): 237 found - 237 modified | TOTAL: 462
- pass 2 (+-): 0 found - 237 modified | TOTAL: 462
- pass 1 (--): 174 found - 174 modified | TOTAL: 636
- pass 2 (--): 0 found - 174 modified | TOTAL: 636
- pass 1 (-+): 206 found - 206 modified | TOTAL: 842
- pass 2 (-+): 0 found - 206 modified | TOTAL: 842
- Iteration Number : 2
- pass 1 (xy+): 9 found - 9 modified | TOTAL: 9
- pass 2 (xy+): 0 found - 9 modified | TOTAL: 9
- pass 1 (xy-): 8 found - 8 modified | TOTAL: 17
- pass 2 (xy-): 0 found - 8 modified | TOTAL: 17
- pass 1 (yz+): 10 found - 10 modified | TOTAL: 27
- pass 2 (yz+): 0 found - 10 modified | TOTAL: 27
- pass 1 (yz-): 12 found - 12 modified | TOTAL: 39
- pass 2 (yz-): 0 found - 12 modified | TOTAL: 39
- pass 1 (xz+): 14 found - 14 modified | TOTAL: 53
- pass 2 (xz+): 0 found - 14 modified | TOTAL: 53
- pass 1 (xz-): 5 found - 5 modified | TOTAL: 58
- pass 2 (xz-): 0 found - 5 modified | TOTAL: 58
- Iteration Number : 2
- pass 1 (+++): 2 found - 2 modified | TOTAL: 2
- pass 2 (+++): 0 found - 2 modified | TOTAL: 2
- pass 1 (+++): 3 found - 3 modified | TOTAL: 5
- pass 2 (+++): 0 found - 3 modified | TOTAL: 5
- pass 1 (+++): 4 found - 4 modified | TOTAL: 9
- pass 2 (+++): 0 found - 4 modified | TOTAL: 9
- pass 1 (+++): 0 found - 0 modified | TOTAL: 9
- Iteration Number : 2
- pass 1 (++): 7 found - 7 modified | TOTAL: 7
- pass 2 (++): 0 found - 7 modified | TOTAL: 7
- pass 1 (+-): 7 found - 7 modified | TOTAL: 14
- pass 2 (+-): 0 found - 7 modified | TOTAL: 14
- pass 1 (--): 3 found - 3 modified | TOTAL: 17
- pass 2 (--): 0 found - 3 modified | TOTAL: 17
- pass 1 (-+): 2 found - 2 modified | TOTAL: 19
- pass 2 (-+): 0 found - 2 modified | TOTAL: 19
- Iteration Number : 3
- pass 1 (xy+): 2 found - 2 modified | TOTAL: 2
- pass 2 (xy+): 0 found - 2 modified | TOTAL: 2
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 2
- pass 1 (yz+): 1 found - 1 modified | TOTAL: 3
- pass 2 (yz+): 0 found - 1 modified | TOTAL: 3
- pass 1 (yz-): 1 found - 1 modified | TOTAL: 4
- pass 2 (yz-): 0 found - 1 modified | TOTAL: 4
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 4
- pass 1 (xz-): 1 found - 1 modified | TOTAL: 5
- pass 2 (xz-): 0 found - 1 modified | TOTAL: 5
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 2 found - 2 modified | TOTAL: 2
- pass 2 (+++): 0 found - 2 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 2
- Iteration Number : 3
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 0 found - 0 modified | TOTAL: 1
- pass 1 (--): 0 found - 0 modified | TOTAL: 1
- pass 1 (-+): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 4
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 4
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 1275 (out of 579115: 0.220164)
- binarizing input wm segmentation...
- Ambiguous edge configurations...
- mri_pretess done
- #--------------------------------------------
- #@# Fill Sat Oct 7 22:00:12 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz
- logging cutting plane coordinates to ../scripts/ponscc.cut.log...
- INFO: Using transforms/talairach.lta and its offset for Talairach volume ...
- using segmentation aseg.auto_noCCseg.mgz...
- reading input volume...done.
- searching for cutting planes...voxel to talairach voxel transform
- 1.01092 0.03138 0.10181 -19.19302;
- -0.04204 1.08448 0.19478 -34.01663;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- voxel to talairach voxel transform
- 1.01092 0.03138 0.10181 -19.19302;
- -0.04204 1.08448 0.19478 -34.01663;
- -0.08525 -0.19985 0.98372 31.86108;
- 0.00000 0.00000 0.00000 1.00000;
- reading segmented volume aseg.auto_noCCseg.mgz...
- Looking for area (min, max) = (350, 1400)
- area[0] = 2358 (min = 350, max = 1400), aspect = 1.38 (min = 0.10, max = 0.75)
- need search nearby
- using seed (124, 114, 93), TAL = (4.0, -35.0, 14.0)
- talairach voxel to voxel transform
- 0.97952 -0.04537 -0.09239 20.20029;
- 0.02193 0.88863 -0.17822 36.32730;
- 0.08934 0.17660 0.97234 -23.25792;
- 0.00000 0.00000 0.00000 1.00000;
- segmentation indicates cc at (124, 114, 93) --> (4.0, -35.0, 14.0)
- done.
- writing output to filled.mgz...
- filling took 0.7 minutes
- talairach cc position changed to (4.00, -35.00, 14.00)
- Erasing brainstem...done.
- seed_search_size = 9, min_neighbors = 5
- search rh wm seed point around talairach space:(22.00, -35.00, 14.00) SRC: (110.27, 123.38, 96.77)
- search lh wm seed point around talairach space (-14.00, -35.00, 14.00), SRC: (145.53, 124.17, 99.99)
- compute mri_fill using aseg
- Erasing Brain Stem and Cerebellum ...
- Define left and right masks using aseg:
- Building Voronoi diagram ...
- Using the Voronoi diagram to separate WM into two hemispheres ...
- Find the largest connected component for each hemisphere ...
- #--------------------------------------------
- #@# Tessellate lh Sat Oct 7 22:00:53 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz
- Iteration Number : 1
- pass 1 (xy+): 2 found - 2 modified | TOTAL: 2
- pass 2 (xy+): 0 found - 2 modified | TOTAL: 2
- pass 1 (xy-): 1 found - 1 modified | TOTAL: 3
- pass 2 (xy-): 0 found - 1 modified | TOTAL: 3
- pass 1 (yz+): 2 found - 2 modified | TOTAL: 5
- pass 2 (yz+): 0 found - 2 modified | TOTAL: 5
- pass 1 (yz-): 4 found - 4 modified | TOTAL: 9
- pass 2 (yz-): 0 found - 4 modified | TOTAL: 9
- pass 1 (xz+): 3 found - 3 modified | TOTAL: 12
- pass 2 (xz+): 0 found - 3 modified | TOTAL: 12
- pass 1 (xz-): 4 found - 4 modified | TOTAL: 16
- pass 2 (xz-): 0 found - 4 modified | TOTAL: 16
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 1
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 1 found - 1 modified | TOTAL: 1
- pass 2 (--): 0 found - 1 modified | TOTAL: 1
- pass 1 (-+): 2 found - 2 modified | TOTAL: 3
- pass 2 (-+): 0 found - 2 modified | TOTAL: 3
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 19 (out of 276700: 0.006867)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 40: 2478 vertices, 2633 faces
- slice 50: 9104 vertices, 9387 faces
- slice 60: 18364 vertices, 18740 faces
- slice 70: 29588 vertices, 30085 faces
- slice 80: 41996 vertices, 42429 faces
- slice 90: 53698 vertices, 54090 faces
- slice 100: 65494 vertices, 65911 faces
- slice 110: 78875 vertices, 79372 faces
- slice 120: 91887 vertices, 92401 faces
- slice 130: 104958 vertices, 105482 faces
- slice 140: 117522 vertices, 118061 faces
- slice 150: 130065 vertices, 130549 faces
- slice 160: 140672 vertices, 141117 faces
- slice 170: 149541 vertices, 149947 faces
- slice 180: 156806 vertices, 157173 faces
- slice 190: 162384 vertices, 162700 faces
- slice 200: 165096 vertices, 165258 faces
- slice 210: 165108 vertices, 165266 faces
- slice 220: 165108 vertices, 165266 faces
- slice 230: 165108 vertices, 165266 faces
- slice 240: 165108 vertices, 165266 faces
- slice 250: 165108 vertices, 165266 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/lh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess255.mgz
- mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix
- counting number of connected components...
- 165108 voxel in cpt #1: X=-158 [v=165108,e=495798,f=330532] located at (-28.296556, -16.001532, 6.379842)
- For the whole surface: X=-158 [v=165108,e=495798,f=330532]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Tessellate rh Sat Oct 7 22:00:59 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz
- Iteration Number : 1
- pass 1 (xy+): 1 found - 1 modified | TOTAL: 1
- pass 2 (xy+): 0 found - 1 modified | TOTAL: 1
- pass 1 (xy-): 1 found - 1 modified | TOTAL: 2
- pass 2 (xy-): 0 found - 1 modified | TOTAL: 2
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 2
- pass 1 (yz-): 2 found - 2 modified | TOTAL: 4
- pass 2 (yz-): 0 found - 2 modified | TOTAL: 4
- pass 1 (xz+): 2 found - 2 modified | TOTAL: 6
- pass 2 (xz+): 0 found - 2 modified | TOTAL: 6
- pass 1 (xz-): 1 found - 1 modified | TOTAL: 7
- pass 2 (xz-): 0 found - 1 modified | TOTAL: 7
- Iteration Number : 1
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 1
- pass 1 (++): 1 found - 1 modified | TOTAL: 1
- pass 2 (++): 0 found - 1 modified | TOTAL: 1
- pass 1 (+-): 0 found - 0 modified | TOTAL: 1
- pass 1 (--): 0 found - 0 modified | TOTAL: 1
- pass 1 (-+): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 2
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 1 found - 1 modified | TOTAL: 1
- pass 2 (xy-): 0 found - 1 modified | TOTAL: 1
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 1
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 1
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 2
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 2
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 1 found - 1 modified | TOTAL: 1
- pass 2 (+-): 0 found - 1 modified | TOTAL: 1
- pass 1 (--): 0 found - 0 modified | TOTAL: 1
- pass 1 (-+): 0 found - 0 modified | TOTAL: 1
- Iteration Number : 3
- pass 1 (xy+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xy-): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (yz-): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz+): 0 found - 0 modified | TOTAL: 0
- pass 1 (xz-): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+++): 0 found - 0 modified | TOTAL: 0
- Iteration Number : 3
- pass 1 (++): 0 found - 0 modified | TOTAL: 0
- pass 1 (+-): 0 found - 0 modified | TOTAL: 0
- pass 1 (--): 0 found - 0 modified | TOTAL: 0
- pass 1 (-+): 0 found - 0 modified | TOTAL: 0
- Total Number of Modified Voxels = 10 (out of 279785: 0.003574)
- Ambiguous edge configurations...
- mri_pretess done
- mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix
- $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- slice 40: 3939 vertices, 4132 faces
- slice 50: 11939 vertices, 12303 faces
- slice 60: 23305 vertices, 23714 faces
- slice 70: 36592 vertices, 37078 faces
- slice 80: 49608 vertices, 50057 faces
- slice 90: 62098 vertices, 62582 faces
- slice 100: 75844 vertices, 76316 faces
- slice 110: 89404 vertices, 89873 faces
- slice 120: 102072 vertices, 102550 faces
- slice 130: 113607 vertices, 114084 faces
- slice 140: 125444 vertices, 125921 faces
- slice 150: 135736 vertices, 136150 faces
- slice 160: 144781 vertices, 145181 faces
- slice 170: 152524 vertices, 152850 faces
- slice 180: 158472 vertices, 158774 faces
- slice 190: 163191 vertices, 163449 faces
- slice 200: 165006 vertices, 165114 faces
- slice 210: 165006 vertices, 165114 faces
- slice 220: 165006 vertices, 165114 faces
- slice 230: 165006 vertices, 165114 faces
- slice 240: 165006 vertices, 165114 faces
- slice 250: 165006 vertices, 165114 faces
- using the conformed surface RAS to save vertex points...
- writing ../surf/rh.orig.nofix
- using vox2ras matrix:
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- rm -f ../mri/filled-pretess127.mgz
- mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix
- counting number of connected components...
- 165006 voxel in cpt #1: X=-108 [v=165006,e=495342,f=330228] located at (29.741858, -21.750174, 5.422554)
- For the whole surface: X=-108 [v=165006,e=495342,f=330228]
- One single component has been found
- nothing to do
- done
- #--------------------------------------------
- #@# Smooth1 lh Sat Oct 7 22:01:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- #--------------------------------------------
- #@# Smooth1 rh Sat Oct 7 22:01:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- Waiting for PID 18559 of (18559 18562) to complete...
- Waiting for PID 18562 of (18559 18562) to complete...
- mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix
- setting seed for random number generator to 1234
- smoothing surface tessellation for 10 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (18559 18562) completed and logs appended.
- #--------------------------------------------
- #@# Inflation1 lh Sat Oct 7 22:01:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- #--------------------------------------------
- #@# Inflation1 rh Sat Oct 7 22:01:13 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Waiting for PID 18609 of (18609 18612) to complete...
- Waiting for PID 18612 of (18609 18612) to complete...
- mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix
- Not saving sulc
- Reading ../surf/lh.smoothwm.nofix
- avg radius = 47.5 mm, total surface area = 84153 mm^2
- writing inflated surface to ../surf/lh.inflated.nofix
- inflation took 0.9 minutes
-
step 000: RMS=0.166 (target=0.015)
step 005: RMS=0.127 (target=0.015)
step 010: RMS=0.098 (target=0.015)
step 015: RMS=0.085 (target=0.015)
step 020: RMS=0.076 (target=0.015)
step 025: RMS=0.069 (target=0.015)
step 030: RMS=0.063 (target=0.015)
step 035: RMS=0.060 (target=0.015)
step 040: RMS=0.057 (target=0.015)
step 045: RMS=0.055 (target=0.015)
step 050: RMS=0.054 (target=0.015)
step 055: RMS=0.054 (target=0.015)
step 060: RMS=0.054 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 51.368190
- mris_inflate stimesec 0.125980
- mris_inflate ru_maxrss 241692
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 34809
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 11624
- mris_inflate ru_oublock 11640
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2269
- mris_inflate ru_nivcsw 3750
- mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix
- Not saving sulc
- Reading ../surf/rh.smoothwm.nofix
- avg radius = 48.2 mm, total surface area = 84947 mm^2
- writing inflated surface to ../surf/rh.inflated.nofix
- inflation took 0.9 minutes
-
step 000: RMS=0.160 (target=0.015)
step 005: RMS=0.122 (target=0.015)
step 010: RMS=0.092 (target=0.015)
step 015: RMS=0.079 (target=0.015)
step 020: RMS=0.069 (target=0.015)
step 025: RMS=0.062 (target=0.015)
step 030: RMS=0.056 (target=0.015)
step 035: RMS=0.053 (target=0.015)
step 040: RMS=0.050 (target=0.015)
step 045: RMS=0.048 (target=0.015)
step 050: RMS=0.046 (target=0.015)
step 055: RMS=0.046 (target=0.015)
step 060: RMS=0.046 (target=0.015)
- inflation complete.
- Not saving sulc
- mris_inflate utimesec 51.577159
- mris_inflate stimesec 0.123981
- mris_inflate ru_maxrss 240788
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 34582
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 0
- mris_inflate ru_oublock 11632
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2273
- mris_inflate ru_nivcsw 3667
- PIDs (18609 18612) completed and logs appended.
- #--------------------------------------------
- #@# QSphere lh Sat Oct 7 22:02:05 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- #--------------------------------------------
- #@# QSphere rh Sat Oct 7 22:02:05 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- Waiting for PID 18765 of (18765 18768) to complete...
- Waiting for PID 18768 of (18765 18768) to complete...
- mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 0.91 +- 0.56 (0.00-->7.60) (max @ vno 67635 --> 68969)
- face area 0.02 +- 0.03 (-0.22-->0.48)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.288...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.096, avgs=0
- 005/300: dt: 0.9000, rms radial error=176.837, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.282, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.552, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.721, avgs=0
- 025/300: dt: 0.9000, rms radial error=173.829, avgs=0
- 030/300: dt: 0.9000, rms radial error=172.904, avgs=0
- 035/300: dt: 0.9000, rms radial error=171.962, avgs=0
- 040/300: dt: 0.9000, rms radial error=171.012, avgs=0
- 045/300: dt: 0.9000, rms radial error=170.059, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.106, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.159, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.216, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.279, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.346, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.418, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.495, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.577, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.665, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.758, avgs=0
- 100/300: dt: 0.9000, rms radial error=159.856, avgs=0
- 105/300: dt: 0.9000, rms radial error=158.959, avgs=0
- 110/300: dt: 0.9000, rms radial error=158.067, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.180, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.297, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.420, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.547, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.679, avgs=0
- 140/300: dt: 0.9000, rms radial error=152.815, avgs=0
- 145/300: dt: 0.9000, rms radial error=151.956, avgs=0
- 150/300: dt: 0.9000, rms radial error=151.102, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.253, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.408, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.568, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.732, avgs=0
- 175/300: dt: 0.9000, rms radial error=146.901, avgs=0
- 180/300: dt: 0.9000, rms radial error=146.075, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.253, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.436, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.623, avgs=0
- 200/300: dt: 0.9000, rms radial error=142.814, avgs=0
- 205/300: dt: 0.9000, rms radial error=142.010, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.211, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.416, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.625, avgs=0
- 225/300: dt: 0.9000, rms radial error=138.839, avgs=0
- 230/300: dt: 0.9000, rms radial error=138.057, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.279, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.506, avgs=0
- 245/300: dt: 0.9000, rms radial error=135.736, avgs=0
- 250/300: dt: 0.9000, rms radial error=134.972, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.211, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.455, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.703, avgs=0
- 270/300: dt: 0.9000, rms radial error=131.955, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.211, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.471, avgs=0
- 285/300: dt: 0.9000, rms radial error=129.735, avgs=0
- 290/300: dt: 0.9000, rms radial error=129.004, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.277, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.553, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 19874.60
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00009
- epoch 2 (K=40.0), pass 1, starting sse = 3542.89
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00003
- epoch 3 (K=160.0), pass 1, starting sse = 425.47
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.03/10 = 0.00266
- epoch 4 (K=640.0), pass 1, starting sse = 40.32
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.06/10 = 0.00587
- final distance error %29.00
- writing spherical brain to ../surf/lh.qsphere.nofix
- spherical transformation took 0.08 hours
- mris_sphere utimesec 293.701350
- mris_sphere stimesec 0.238963
- mris_sphere ru_maxrss 241896
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 35370
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 11624
- mris_sphere ru_oublock 11664
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 7749
- mris_sphere ru_nivcsw 21118
- FSRUNTIME@ mris_sphere 0.0816 hours 1 threads
- mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix
- doing quick spherical unfolding.
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- vertex spacing 0.90 +- 0.55 (0.00-->6.72) (max @ vno 122746 --> 122747)
- face area 0.02 +- 0.03 (-0.16-->0.54)
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.284...
- inflating to sphere (rms error < 2.00)
- 000: dt: 0.0000, rms radial error=177.022, avgs=0
- 005/300: dt: 0.9000, rms radial error=176.763, avgs=0
- 010/300: dt: 0.9000, rms radial error=176.208, avgs=0
- 015/300: dt: 0.9000, rms radial error=175.478, avgs=0
- 020/300: dt: 0.9000, rms radial error=174.647, avgs=0
- 025/300: dt: 0.9000, rms radial error=173.756, avgs=0
- 030/300: dt: 0.9000, rms radial error=172.833, avgs=0
- 035/300: dt: 0.9000, rms radial error=171.892, avgs=0
- 040/300: dt: 0.9000, rms radial error=170.944, avgs=0
- 045/300: dt: 0.9000, rms radial error=169.993, avgs=0
- 050/300: dt: 0.9000, rms radial error=169.043, avgs=0
- 055/300: dt: 0.9000, rms radial error=168.095, avgs=0
- 060/300: dt: 0.9000, rms radial error=167.150, avgs=0
- 065/300: dt: 0.9000, rms radial error=166.210, avgs=0
- 070/300: dt: 0.9000, rms radial error=165.275, avgs=0
- 075/300: dt: 0.9000, rms radial error=164.344, avgs=0
- 080/300: dt: 0.9000, rms radial error=163.418, avgs=0
- 085/300: dt: 0.9000, rms radial error=162.497, avgs=0
- 090/300: dt: 0.9000, rms radial error=161.580, avgs=0
- 095/300: dt: 0.9000, rms radial error=160.669, avgs=0
- 100/300: dt: 0.9000, rms radial error=159.762, avgs=0
- 105/300: dt: 0.9000, rms radial error=158.860, avgs=0
- 110/300: dt: 0.9000, rms radial error=157.964, avgs=0
- 115/300: dt: 0.9000, rms radial error=157.073, avgs=0
- 120/300: dt: 0.9000, rms radial error=156.187, avgs=0
- 125/300: dt: 0.9000, rms radial error=155.307, avgs=0
- 130/300: dt: 0.9000, rms radial error=154.430, avgs=0
- 135/300: dt: 0.9000, rms radial error=153.559, avgs=0
- 140/300: dt: 0.9000, rms radial error=152.692, avgs=0
- 145/300: dt: 0.9000, rms radial error=151.830, avgs=0
- 150/300: dt: 0.9000, rms radial error=150.973, avgs=0
- 155/300: dt: 0.9000, rms radial error=150.120, avgs=0
- 160/300: dt: 0.9000, rms radial error=149.272, avgs=0
- 165/300: dt: 0.9000, rms radial error=148.429, avgs=0
- 170/300: dt: 0.9000, rms radial error=147.590, avgs=0
- 175/300: dt: 0.9000, rms radial error=146.756, avgs=0
- 180/300: dt: 0.9000, rms radial error=145.926, avgs=0
- 185/300: dt: 0.9000, rms radial error=145.101, avgs=0
- 190/300: dt: 0.9000, rms radial error=144.280, avgs=0
- 195/300: dt: 0.9000, rms radial error=143.464, avgs=0
- 200/300: dt: 0.9000, rms radial error=142.653, avgs=0
- 205/300: dt: 0.9000, rms radial error=141.846, avgs=0
- 210/300: dt: 0.9000, rms radial error=141.044, avgs=0
- 215/300: dt: 0.9000, rms radial error=140.246, avgs=0
- 220/300: dt: 0.9000, rms radial error=139.453, avgs=0
- 225/300: dt: 0.9000, rms radial error=138.664, avgs=0
- 230/300: dt: 0.9000, rms radial error=137.880, avgs=0
- 235/300: dt: 0.9000, rms radial error=137.100, avgs=0
- 240/300: dt: 0.9000, rms radial error=136.325, avgs=0
- 245/300: dt: 0.9000, rms radial error=135.554, avgs=0
- 250/300: dt: 0.9000, rms radial error=134.787, avgs=0
- 255/300: dt: 0.9000, rms radial error=134.025, avgs=0
- 260/300: dt: 0.9000, rms radial error=133.267, avgs=0
- 265/300: dt: 0.9000, rms radial error=132.513, avgs=0
- 270/300: dt: 0.9000, rms radial error=131.764, avgs=0
- 275/300: dt: 0.9000, rms radial error=131.019, avgs=0
- 280/300: dt: 0.9000, rms radial error=130.278, avgs=0
- 285/300: dt: 0.9000, rms radial error=129.541, avgs=0
- 290/300: dt: 0.9000, rms radial error=128.808, avgs=0
- 295/300: dt: 0.9000, rms radial error=128.079, avgs=0
- 300/300: dt: 0.9000, rms radial error=127.355, avgs=0
- spherical inflation complete.
- epoch 1 (K=10.0), pass 1, starting sse = 19909.33
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00012
- epoch 2 (K=40.0), pass 1, starting sse = 3551.54
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.00/10 = 0.00001
- epoch 3 (K=160.0), pass 1, starting sse = 421.95
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.04/10 = 0.00435
- epoch 4 (K=640.0), pass 1, starting sse = 35.26
- taking momentum steps...
- taking momentum steps...
- taking momentum steps...
- pass 1 complete, delta sse/iter = 0.07/11 = 0.00619
- final distance error %28.61
- writing spherical brain to ../surf/rh.qsphere.nofix
- spherical transformation took 0.08 hours
- mris_sphere utimesec 295.184125
- mris_sphere stimesec 0.220966
- mris_sphere ru_maxrss 241000
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 34634
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 11616
- mris_sphere ru_oublock 11656
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 8093
- mris_sphere ru_nivcsw 21213
- FSRUNTIME@ mris_sphere 0.0819 hours 1 threads
- PIDs (18765 18768) completed and logs appended.
- #--------------------------------------------
- #@# Fix Topology Copy lh Sat Oct 7 22:07:00 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- cp ../surf/lh.orig.nofix ../surf/lh.orig
- cp ../surf/lh.inflated.nofix ../surf/lh.inflated
- #--------------------------------------------
- #@# Fix Topology Copy rh Sat Oct 7 22:07:00 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- cp ../surf/rh.orig.nofix ../surf/rh.orig
- cp ../surf/rh.inflated.nofix ../surf/rh.inflated
- #@# Fix Topology lh Sat Oct 7 22:07:00 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050116 lh
- #@# Fix Topology rh Sat Oct 7 22:07:00 CEST 2017
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050116 rh
- Waiting for PID 19193 of (19193 19196) to complete...
- Waiting for PID 19196 of (19193 19196) to complete...
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050116 lh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-158 (nv=165108, nf=330532, ne=495798, g=80)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 8 iterations
- marking ambiguous vertices...
- 13103 ambiguous faces found in tessellation
- segmenting defects...
- 76 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- 76 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.4727 (-4.7363)
- -vertex loglikelihood: -6.3007 (-3.1503)
- -normal dot loglikelihood: -3.5330 (-3.5330)
- -quad curv loglikelihood: -6.3894 (-3.1947)
- Total Loglikelihood : -25.6958
- CORRECTING DEFECT 0 (vertices=98, convex hull=83, v0=42)
- After retessellation of defect 0 (v0=42), euler #=-70 (157406,469736,312260) : difference with theory (-73) = -3
- CORRECTING DEFECT 1 (vertices=737, convex hull=353, v0=162)
- After retessellation of defect 1 (v0=162), euler #=-69 (157501,470185,312615) : difference with theory (-72) = -3
- CORRECTING DEFECT 2 (vertices=43, convex hull=59, v0=740)
- After retessellation of defect 2 (v0=740), euler #=-68 (157519,470267,312680) : difference with theory (-71) = -3
- CORRECTING DEFECT 3 (vertices=161, convex hull=34, v0=1650)
- After retessellation of defect 3 (v0=1650), euler #=-67 (157523,470294,312704) : difference with theory (-70) = -3
- CORRECTING DEFECT 4 (vertices=31, convex hull=52, v0=2558)
- After retessellation of defect 4 (v0=2558), euler #=-66 (157536,470356,312754) : difference with theory (-69) = -3
- CORRECTING DEFECT 5 (vertices=33, convex hull=71, v0=3887)
- After retessellation of defect 5 (v0=3887), euler #=-65 (157554,470441,312822) : difference with theory (-68) = -3
- CORRECTING DEFECT 6 (vertices=7, convex hull=19, v0=26078)
- After retessellation of defect 6 (v0=26078), euler #=-64 (157555,470452,312833) : difference with theory (-67) = -3
- CORRECTING DEFECT 7 (vertices=240, convex hull=266, v0=46521)
- After retessellation of defect 7 (v0=46521), euler #=-63 (157627,470793,313103) : difference with theory (-66) = -3
- CORRECTING DEFECT 8 (vertices=20, convex hull=45, v0=51606)
- After retessellation of defect 8 (v0=51606), euler #=-62 (157636,470831,313133) : difference with theory (-65) = -3
- CORRECTING DEFECT 9 (vertices=26, convex hull=54, v0=59876)
- After retessellation of defect 9 (v0=59876), euler #=-61 (157650,470891,313180) : difference with theory (-64) = -3
- CORRECTING DEFECT 10 (vertices=22, convex hull=40, v0=63343)
- After retessellation of defect 10 (v0=63343), euler #=-60 (157659,470934,313215) : difference with theory (-63) = -3
- CORRECTING DEFECT 11 (vertices=352, convex hull=204, v0=63942)
- After retessellation of defect 11 (v0=63942), euler #=-59 (157797,471440,313584) : difference with theory (-62) = -3
- CORRECTING DEFECT 12 (vertices=58, convex hull=32, v0=69310)
- After retessellation of defect 12 (v0=69310), euler #=-58 (157804,471469,313607) : difference with theory (-61) = -3
- CORRECTING DEFECT 13 (vertices=8, convex hull=29, v0=69662)
- After retessellation of defect 13 (v0=69662), euler #=-57 (157805,471482,313620) : difference with theory (-60) = -3
- CORRECTING DEFECT 14 (vertices=24, convex hull=54, v0=69690)
- After retessellation of defect 14 (v0=69690), euler #=-56 (157820,471552,313676) : difference with theory (-59) = -3
- CORRECTING DEFECT 15 (vertices=1608, convex hull=524, v0=70445)
- L defect detected...
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 4 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160226 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160226 with 3 faces
- normal vector of length zero at vertex 160226 with 3 faces
- normal vector of length zero at vertex 160514 with 4 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 160514 with 3 faces
- normal vector of length zero at vertex 159984 with 4 faces
- After retessellation of defect 15 (v0=70445), euler #=-55 (157986,472318,314277) : difference with theory (-58) = -3
- CORRECTING DEFECT 16 (vertices=26, convex hull=45, v0=70968)
- After retessellation of defect 16 (v0=70968), euler #=-54 (157999,472374,314321) : difference with theory (-57) = -3
- CORRECTING DEFECT 17 (vertices=288, convex hull=234, v0=74468)
- After retessellation of defect 17 (v0=74468), euler #=-53 (158133,472901,314715) : difference with theory (-56) = -3
- CORRECTING DEFECT 18 (vertices=29, convex hull=60, v0=75333)
- After retessellation of defect 18 (v0=75333), euler #=-52 (158151,472976,314773) : difference with theory (-55) = -3
- CORRECTING DEFECT 19 (vertices=39, convex hull=29, v0=77530)
- After retessellation of defect 19 (v0=77530), euler #=-51 (158154,472994,314789) : difference with theory (-54) = -3
- CORRECTING DEFECT 20 (vertices=6, convex hull=27, v0=80972)
- After retessellation of defect 20 (v0=80972), euler #=-50 (158157,473011,314804) : difference with theory (-53) = -3
- CORRECTING DEFECT 21 (vertices=118, convex hull=163, v0=85072)
- After retessellation of defect 21 (v0=85072), euler #=-49 (158228,473306,315029) : difference with theory (-52) = -3
- CORRECTING DEFECT 22 (vertices=369, convex hull=64, v0=87462)
- After retessellation of defect 22 (v0=87462), euler #=-48 (158241,473373,315084) : difference with theory (-51) = -3
- CORRECTING DEFECT 23 (vertices=7, convex hull=13, v0=90006)
- After retessellation of defect 23 (v0=90006), euler #=-47 (158242,473379,315090) : difference with theory (-50) = -3
- CORRECTING DEFECT 24 (vertices=27, convex hull=58, v0=91887)
- After retessellation of defect 24 (v0=91887), euler #=-46 (158256,473449,315147) : difference with theory (-49) = -3
- CORRECTING DEFECT 25 (vertices=56, convex hull=62, v0=93205)
- After retessellation of defect 25 (v0=93205), euler #=-45 (158282,473553,315226) : difference with theory (-48) = -3
- CORRECTING DEFECT 26 (vertices=18, convex hull=51, v0=94709)
- After retessellation of defect 26 (v0=94709), euler #=-44 (158292,473600,315264) : difference with theory (-47) = -3
- CORRECTING DEFECT 27 (vertices=122, convex hull=53, v0=99501)
- After retessellation of defect 27 (v0=99501), euler #=-43 (158305,473657,315309) : difference with theory (-46) = -3
- CORRECTING DEFECT 28 (vertices=5, convex hull=22, v0=100558)
- After retessellation of defect 28 (v0=100558), euler #=-42 (158306,473665,315317) : difference with theory (-45) = -3
- CORRECTING DEFECT 29 (vertices=8, convex hull=28, v0=103090)
- After retessellation of defect 29 (v0=103090), euler #=-41 (158308,473679,315330) : difference with theory (-44) = -3
- CORRECTING DEFECT 30 (vertices=11, convex hull=27, v0=107142)
- After retessellation of defect 30 (v0=107142), euler #=-40 (158310,473696,315346) : difference with theory (-43) = -3
- CORRECTING DEFECT 31 (vertices=90, convex hull=80, v0=107271)
- After retessellation of defect 31 (v0=107271), euler #=-39 (158342,473827,315446) : difference with theory (-42) = -3
- CORRECTING DEFECT 32 (vertices=19, convex hull=22, v0=109940)
- After retessellation of defect 32 (v0=109940), euler #=-38 (158344,473837,315455) : difference with theory (-41) = -3
- CORRECTING DEFECT 33 (vertices=11, convex hull=27, v0=111328)
- After retessellation of defect 33 (v0=111328), euler #=-37 (158345,473847,315465) : difference with theory (-40) = -3
- CORRECTING DEFECT 34 (vertices=9, convex hull=19, v0=112609)
- After retessellation of defect 34 (v0=112609), euler #=-36 (158346,473857,315475) : difference with theory (-39) = -3
- CORRECTING DEFECT 35 (vertices=15, convex hull=25, v0=112694)
- After retessellation of defect 35 (v0=112694), euler #=-35 (158348,473871,315488) : difference with theory (-38) = -3
- CORRECTING DEFECT 36 (vertices=492, convex hull=286, v0=113250)
- After retessellation of defect 36 (v0=113250), euler #=-36 (158517,474541,315988) : difference with theory (-37) = -1
- CORRECTING DEFECT 37 (vertices=108, convex hull=46, v0=113398)
- After retessellation of defect 37 (v0=113398), euler #=-35 (158537,474618,316046) : difference with theory (-36) = -1
- CORRECTING DEFECT 38 (vertices=86, convex hull=78, v0=114401)
- After retessellation of defect 38 (v0=114401), euler #=-34 (158554,474700,316112) : difference with theory (-35) = -1
- CORRECTING DEFECT 39 (vertices=19, convex hull=25, v0=115261)
- After retessellation of defect 39 (v0=115261), euler #=-33 (158556,474713,316124) : difference with theory (-34) = -1
- CORRECTING DEFECT 40 (vertices=43, convex hull=38, v0=115649)
- After retessellation of defect 40 (v0=115649), euler #=-32 (158564,474750,316154) : difference with theory (-33) = -1
- CORRECTING DEFECT 41 (vertices=20, convex hull=23, v0=117693)
- After retessellation of defect 41 (v0=117693), euler #=-31 (158567,474767,316169) : difference with theory (-32) = -1
- CORRECTING DEFECT 42 (vertices=16, convex hull=24, v0=117757)
- After retessellation of defect 42 (v0=117757), euler #=-30 (158570,474787,316187) : difference with theory (-31) = -1
- CORRECTING DEFECT 43 (vertices=261, convex hull=207, v0=118317)
- After retessellation of defect 43 (v0=118317), euler #=-29 (158658,475154,316467) : difference with theory (-30) = -1
- CORRECTING DEFECT 44 (vertices=65, convex hull=59, v0=118404)
- After retessellation of defect 44 (v0=118404), euler #=-28 (158683,475251,316540) : difference with theory (-29) = -1
- CORRECTING DEFECT 45 (vertices=38, convex hull=25, v0=118425)
- After retessellation of defect 45 (v0=118425), euler #=-27 (158684,475263,316552) : difference with theory (-28) = -1
- CORRECTING DEFECT 46 (vertices=22, convex hull=28, v0=118781)
- After retessellation of defect 46 (v0=118781), euler #=-26 (158687,475281,316568) : difference with theory (-27) = -1
- CORRECTING DEFECT 47 (vertices=33, convex hull=31, v0=119745)
- After retessellation of defect 47 (v0=119745), euler #=-25 (158692,475308,316591) : difference with theory (-26) = -1
- CORRECTING DEFECT 48 (vertices=42, convex hull=63, v0=119784)
- After retessellation of defect 48 (v0=119784), euler #=-24 (158716,475407,316667) : difference with theory (-25) = -1
- CORRECTING DEFECT 49 (vertices=58, convex hull=38, v0=121063)
- After retessellation of defect 49 (v0=121063), euler #=-23 (158731,475465,316711) : difference with theory (-24) = -1
- CORRECTING DEFECT 50 (vertices=41, convex hull=76, v0=122229)
- After retessellation of defect 50 (v0=122229), euler #=-22 (158755,475566,316789) : difference with theory (-23) = -1
- CORRECTING DEFECT 51 (vertices=24, convex hull=46, v0=123424)
- After retessellation of defect 51 (v0=123424), euler #=-21 (158759,475592,316812) : difference with theory (-22) = -1
- CORRECTING DEFECT 52 (vertices=112, convex hull=123, v0=123787)
- After retessellation of defect 52 (v0=123787), euler #=-20 (158818,475827,316989) : difference with theory (-21) = -1
- CORRECTING DEFECT 53 (vertices=617, convex hull=255, v0=124676)
- After retessellation of defect 53 (v0=124676), euler #=-19 (158873,476136,317244) : difference with theory (-20) = -1
- CORRECTING DEFECT 54 (vertices=118, convex hull=40, v0=124786)
- After retessellation of defect 54 (v0=124786), euler #=-18 (158887,476190,317285) : difference with theory (-19) = -1
- CORRECTING DEFECT 55 (vertices=50, convex hull=70, v0=124834)
- After retessellation of defect 55 (v0=124834), euler #=-17 (158908,476283,317358) : difference with theory (-18) = -1
- CORRECTING DEFECT 56 (vertices=43, convex hull=42, v0=125153)
- After retessellation of defect 56 (v0=125153), euler #=-16 (158916,476322,317390) : difference with theory (-17) = -1
- CORRECTING DEFECT 57 (vertices=21, convex hull=22, v0=128664)
- After retessellation of defect 57 (v0=128664), euler #=-15 (158917,476332,317400) : difference with theory (-16) = -1
- CORRECTING DEFECT 58 (vertices=11, convex hull=22, v0=128814)
- After retessellation of defect 58 (v0=128814), euler #=-14 (158920,476347,317413) : difference with theory (-15) = -1
- CORRECTING DEFECT 59 (vertices=159, convex hull=126, v0=130976)
- After retessellation of defect 59 (v0=130976), euler #=-13 (158961,476535,317561) : difference with theory (-14) = -1
- CORRECTING DEFECT 60 (vertices=48, convex hull=56, v0=133879)
- After retessellation of defect 60 (v0=133879), euler #=-13 (158976,476605,317616) : difference with theory (-13) = 0
- CORRECTING DEFECT 61 (vertices=21, convex hull=49, v0=135354)
- After retessellation of defect 61 (v0=135354), euler #=-12 (158986,476654,317656) : difference with theory (-12) = 0
- CORRECTING DEFECT 62 (vertices=18, convex hull=64, v0=136800)
- After retessellation of defect 62 (v0=136800), euler #=-11 (158995,476701,317695) : difference with theory (-11) = 0
- CORRECTING DEFECT 63 (vertices=21, convex hull=51, v0=136862)
- After retessellation of defect 63 (v0=136862), euler #=-10 (159006,476750,317734) : difference with theory (-10) = 0
- CORRECTING DEFECT 64 (vertices=22, convex hull=41, v0=141746)
- After retessellation of defect 64 (v0=141746), euler #=-9 (159014,476791,317768) : difference with theory (-9) = 0
- CORRECTING DEFECT 65 (vertices=6, convex hull=22, v0=143219)
- After retessellation of defect 65 (v0=143219), euler #=-8 (159014,476796,317774) : difference with theory (-8) = 0
- CORRECTING DEFECT 66 (vertices=32, convex hull=60, v0=148230)
- After retessellation of defect 66 (v0=148230), euler #=-7 (159032,476872,317833) : difference with theory (-7) = 0
- CORRECTING DEFECT 67 (vertices=35, convex hull=96, v0=148427)
- After retessellation of defect 67 (v0=148427), euler #=-6 (159050,476962,317906) : difference with theory (-6) = 0
- CORRECTING DEFECT 68 (vertices=32, convex hull=63, v0=154774)
- After retessellation of defect 68 (v0=154774), euler #=-5 (159065,477032,317962) : difference with theory (-5) = 0
- CORRECTING DEFECT 69 (vertices=31, convex hull=74, v0=156211)
- After retessellation of defect 69 (v0=156211), euler #=-4 (159076,477091,318011) : difference with theory (-4) = 0
- CORRECTING DEFECT 70 (vertices=51, convex hull=78, v0=159096)
- After retessellation of defect 70 (v0=159096), euler #=-3 (159101,477200,318096) : difference with theory (-3) = 0
- CORRECTING DEFECT 71 (vertices=25, convex hull=46, v0=161576)
- After retessellation of defect 71 (v0=161576), euler #=-2 (159110,477244,318132) : difference with theory (-2) = 0
- CORRECTING DEFECT 72 (vertices=33, convex hull=55, v0=161966)
- After retessellation of defect 72 (v0=161966), euler #=-1 (159126,477311,318184) : difference with theory (-1) = 0
- CORRECTING DEFECT 73 (vertices=40, convex hull=71, v0=162552)
- After retessellation of defect 73 (v0=162552), euler #=0 (159148,477402,318254) : difference with theory (0) = 0
- CORRECTING DEFECT 74 (vertices=26, convex hull=54, v0=163454)
- After retessellation of defect 74 (v0=163454), euler #=1 (159150,477428,318279) : difference with theory (1) = 0
- CORRECTING DEFECT 75 (vertices=31, convex hull=44, v0=163481)
- After retessellation of defect 75 (v0=163481), euler #=2 (159161,477477,318318) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.88 +- 0.26 (0.05-->16.67) (max @ vno 3140 --> 5604)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.88 +- 0.26 (0.05-->16.67) (max @ vno 3140 --> 5604)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 241 mutations (34.8%), 452 crossovers (65.2%), 565 vertices were eliminated
- building final representation...
- 5947 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=159161, nf=318318, ne=477477, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 73.0 minutes
- 0 defective edges
- removing intersecting faces
- 000: 601 intersecting
- 001: 15 intersecting
- 002: 8 intersecting
- mris_fix_topology utimesec 4383.767566
- mris_fix_topology stimesec 0.216967
- mris_fix_topology ru_maxrss 535224
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 65856
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 0
- mris_fix_topology ru_oublock 15552
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 677
- mris_fix_topology ru_nivcsw 7070
- FSRUNTIME@ mris_fix_topology lh 1.2174 hours 1 threads
- mris_fix_topology -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 0050116 rh
- reading spherical homeomorphism from 'qsphere.nofix'
- using genetic algorithm with optimized parameters
- setting seed for random number genererator to 1234
- *************************************************************
- Topology Correction Parameters
- retessellation mode: genetic search
- number of patches/generation : 10
- number of generations : 10
- surface mri loglikelihood coefficient : 1.0
- volume mri loglikelihood coefficient : 10.0
- normal dot loglikelihood coefficient : 1.0
- quadratic curvature loglikelihood coefficient : 1.0
- volume resolution : 2
- eliminate vertices during search : 1
- initial patch selection : 1
- select all defect vertices : 0
- ordering dependant retessellation: 0
- use precomputed edge table : 0
- smooth retessellated patch : 2
- match retessellated patch : 1
- verbose mode : 0
- *************************************************************
- INFO: assuming .mgz format
- $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- before topology correction, eno=-108 (nv=165006, nf=330228, ne=495342, g=55)
- using quasi-homeomorphic spherical map to tessellate cortical surface...
- Correction of the Topology
- Finding true center and radius of Spherical Surface...done
- Surface centered at (0,0,0) with radius 100.0 in 9 iterations
- marking ambiguous vertices...
- 8536 ambiguous faces found in tessellation
- segmenting defects...
- 64 defects found, arbitrating ambiguous regions...
- analyzing neighboring defects...
- -merging segment 20 into 16
- -merging segment 35 into 27
- 62 defects to be corrected
- 0 vertices coincident
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.qsphere.nofix...
- reading brain volume from brain...
- reading wm segmentation from wm...
- Computing Initial Surface Statistics
- -face loglikelihood: -9.4373 (-4.7186)
- -vertex loglikelihood: -6.4381 (-3.2190)
- -normal dot loglikelihood: -3.5684 (-3.5684)
- -quad curv loglikelihood: -6.5418 (-3.2709)
- Total Loglikelihood : -25.9856
- CORRECTING DEFECT 0 (vertices=39, convex hull=36, v0=241)
- After retessellation of defect 0 (v0=241), euler #=-58 (159840,477614,317716) : difference with theory (-59) = -1
- CORRECTING DEFECT 1 (vertices=85, convex hull=120, v0=347)
- After retessellation of defect 1 (v0=347), euler #=-57 (159851,477701,317793) : difference with theory (-58) = -1
- CORRECTING DEFECT 2 (vertices=62, convex hull=30, v0=572)
- After retessellation of defect 2 (v0=572), euler #=-56 (159853,477716,317807) : difference with theory (-57) = -1
- CORRECTING DEFECT 3 (vertices=35, convex hull=27, v0=725)
- After retessellation of defect 3 (v0=725), euler #=-55 (159855,477733,317823) : difference with theory (-56) = -1
- CORRECTING DEFECT 4 (vertices=28, convex hull=63, v0=4686)
- After retessellation of defect 4 (v0=4686), euler #=-54 (159873,477814,317887) : difference with theory (-55) = -1
- CORRECTING DEFECT 5 (vertices=39, convex hull=59, v0=12908)
- After retessellation of defect 5 (v0=12908), euler #=-53 (159884,477874,317937) : difference with theory (-54) = -1
- CORRECTING DEFECT 6 (vertices=16, convex hull=48, v0=20966)
- After retessellation of defect 6 (v0=20966), euler #=-52 (159889,477905,317964) : difference with theory (-53) = -1
- CORRECTING DEFECT 7 (vertices=28, convex hull=61, v0=21084)
- After retessellation of defect 7 (v0=21084), euler #=-51 (159901,477967,318015) : difference with theory (-52) = -1
- CORRECTING DEFECT 8 (vertices=9, convex hull=15, v0=22167)
- After retessellation of defect 8 (v0=22167), euler #=-50 (159902,477975,318023) : difference with theory (-51) = -1
- CORRECTING DEFECT 9 (vertices=22, convex hull=48, v0=31613)
- After retessellation of defect 9 (v0=31613), euler #=-49 (159913,478027,318065) : difference with theory (-50) = -1
- CORRECTING DEFECT 10 (vertices=15, convex hull=44, v0=48671)
- After retessellation of defect 10 (v0=48671), euler #=-48 (159921,478065,318096) : difference with theory (-49) = -1
- CORRECTING DEFECT 11 (vertices=351, convex hull=329, v0=49306)
- After retessellation of defect 11 (v0=49306), euler #=-47 (160060,478657,318550) : difference with theory (-48) = -1
- CORRECTING DEFECT 12 (vertices=64, convex hull=49, v0=49380)
- After retessellation of defect 12 (v0=49380), euler #=-46 (160069,478701,318586) : difference with theory (-47) = -1
- CORRECTING DEFECT 13 (vertices=130, convex hull=63, v0=59054)
- After retessellation of defect 13 (v0=59054), euler #=-45 (160089,478784,318650) : difference with theory (-46) = -1
- CORRECTING DEFECT 14 (vertices=102, convex hull=40, v0=61954)
- After retessellation of defect 14 (v0=61954), euler #=-44 (160098,478823,318681) : difference with theory (-45) = -1
- CORRECTING DEFECT 15 (vertices=24, convex hull=35, v0=63535)
- After retessellation of defect 15 (v0=63535), euler #=-43 (160108,478864,318713) : difference with theory (-44) = -1
- CORRECTING DEFECT 16 (vertices=972, convex hull=431, v0=66983)
- L defect detected...
- After retessellation of defect 16 (v0=66983), euler #=-42 (160250,479550,319258) : difference with theory (-43) = -1
- CORRECTING DEFECT 17 (vertices=24, convex hull=45, v0=70351)
- After retessellation of defect 17 (v0=70351), euler #=-41 (160259,479594,319294) : difference with theory (-42) = -1
- CORRECTING DEFECT 18 (vertices=33, convex hull=58, v0=70455)
- After retessellation of defect 18 (v0=70455), euler #=-40 (160269,479642,319333) : difference with theory (-41) = -1
- CORRECTING DEFECT 19 (vertices=9, convex hull=29, v0=73445)
- After retessellation of defect 19 (v0=73445), euler #=-39 (160271,479654,319344) : difference with theory (-40) = -1
- CORRECTING DEFECT 20 (vertices=77, convex hull=36, v0=76519)
- After retessellation of defect 20 (v0=76519), euler #=-38 (160286,479712,319388) : difference with theory (-39) = -1
- CORRECTING DEFECT 21 (vertices=34, convex hull=63, v0=77825)
- After retessellation of defect 21 (v0=77825), euler #=-37 (160297,479771,319437) : difference with theory (-38) = -1
- CORRECTING DEFECT 22 (vertices=10, convex hull=22, v0=77931)
- After retessellation of defect 22 (v0=77931), euler #=-36 (160300,479787,319451) : difference with theory (-37) = -1
- CORRECTING DEFECT 23 (vertices=59, convex hull=24, v0=78194)
- After retessellation of defect 23 (v0=78194), euler #=-35 (160309,479822,319478) : difference with theory (-36) = -1
- CORRECTING DEFECT 24 (vertices=16, convex hull=10, v0=78875)
- After retessellation of defect 24 (v0=78875), euler #=-34 (160310,479826,319482) : difference with theory (-35) = -1
- CORRECTING DEFECT 25 (vertices=29, convex hull=53, v0=79132)
- After retessellation of defect 25 (v0=79132), euler #=-33 (160319,479874,319522) : difference with theory (-34) = -1
- CORRECTING DEFECT 26 (vertices=257, convex hull=155, v0=80342)
- After retessellation of defect 26 (v0=80342), euler #=-31 (160357,480064,319676) : difference with theory (-33) = -2
- CORRECTING DEFECT 27 (vertices=68, convex hull=84, v0=82600)
- After retessellation of defect 27 (v0=82600), euler #=-30 (160380,480169,319759) : difference with theory (-32) = -2
- CORRECTING DEFECT 28 (vertices=34, convex hull=31, v0=84952)
- After retessellation of defect 28 (v0=84952), euler #=-29 (160385,480197,319783) : difference with theory (-31) = -2
- CORRECTING DEFECT 29 (vertices=191, convex hull=93, v0=90356)
- After retessellation of defect 29 (v0=90356), euler #=-29 (160420,480347,319898) : difference with theory (-30) = -1
- CORRECTING DEFECT 30 (vertices=39, convex hull=73, v0=91053)
- After retessellation of defect 30 (v0=91053), euler #=-28 (160438,480431,319965) : difference with theory (-29) = -1
- CORRECTING DEFECT 31 (vertices=69, convex hull=53, v0=93952)
- After retessellation of defect 31 (v0=93952), euler #=-27 (160447,480477,320003) : difference with theory (-28) = -1
- CORRECTING DEFECT 32 (vertices=43, convex hull=98, v0=94833)
- After retessellation of defect 32 (v0=94833), euler #=-26 (160474,480606,320106) : difference with theory (-27) = -1
- CORRECTING DEFECT 33 (vertices=180, convex hull=62, v0=94928)
- After retessellation of defect 33 (v0=94928), euler #=-25 (160483,480664,320156) : difference with theory (-26) = -1
- CORRECTING DEFECT 34 (vertices=13, convex hull=17, v0=102159)
- After retessellation of defect 34 (v0=102159), euler #=-24 (160483,480670,320163) : difference with theory (-25) = -1
- CORRECTING DEFECT 35 (vertices=18, convex hull=23, v0=107582)
- After retessellation of defect 35 (v0=107582), euler #=-23 (160488,480690,320179) : difference with theory (-24) = -1
- CORRECTING DEFECT 36 (vertices=31, convex hull=76, v0=109090)
- After retessellation of defect 36 (v0=109090), euler #=-22 (160503,480767,320242) : difference with theory (-23) = -1
- CORRECTING DEFECT 37 (vertices=161, convex hull=54, v0=110948)
- After retessellation of defect 37 (v0=110948), euler #=-21 (160519,480838,320298) : difference with theory (-22) = -1
- CORRECTING DEFECT 38 (vertices=23, convex hull=53, v0=114463)
- After retessellation of defect 38 (v0=114463), euler #=-20 (160535,480912,320357) : difference with theory (-21) = -1
- CORRECTING DEFECT 39 (vertices=97, convex hull=105, v0=116706)
- After retessellation of defect 39 (v0=116706), euler #=-19 (160589,481119,320511) : difference with theory (-20) = -1
- CORRECTING DEFECT 40 (vertices=64, convex hull=37, v0=116915)
- After retessellation of defect 40 (v0=116915), euler #=-18 (160599,481165,320548) : difference with theory (-19) = -1
- CORRECTING DEFECT 41 (vertices=32, convex hull=52, v0=118640)
- After retessellation of defect 41 (v0=118640), euler #=-17 (160608,481214,320589) : difference with theory (-18) = -1
- CORRECTING DEFECT 42 (vertices=27, convex hull=57, v0=120585)
- After retessellation of defect 42 (v0=120585), euler #=-16 (160622,481277,320639) : difference with theory (-17) = -1
- CORRECTING DEFECT 43 (vertices=660, convex hull=300, v0=122586)
- After retessellation of defect 43 (v0=122586), euler #=-15 (160685,481618,320918) : difference with theory (-16) = -1
- CORRECTING DEFECT 44 (vertices=35, convex hull=69, v0=124969)
- After retessellation of defect 44 (v0=124969), euler #=-14 (160695,481676,320967) : difference with theory (-15) = -1
- CORRECTING DEFECT 45 (vertices=26, convex hull=35, v0=125110)
- After retessellation of defect 45 (v0=125110), euler #=-13 (160699,481697,320985) : difference with theory (-14) = -1
- CORRECTING DEFECT 46 (vertices=7, convex hull=8, v0=126941)
- After retessellation of defect 46 (v0=126941), euler #=-12 (160699,481698,320987) : difference with theory (-13) = -1
- CORRECTING DEFECT 47 (vertices=23, convex hull=46, v0=127267)
- After retessellation of defect 47 (v0=127267), euler #=-11 (160708,481738,321019) : difference with theory (-12) = -1
- CORRECTING DEFECT 48 (vertices=346, convex hull=266, v0=128396)
- After retessellation of defect 48 (v0=128396), euler #=-11 (160851,482308,321446) : difference with theory (-11) = 0
- CORRECTING DEFECT 49 (vertices=9, convex hull=27, v0=130808)
- After retessellation of defect 49 (v0=130808), euler #=-10 (160852,482320,321458) : difference with theory (-10) = 0
- CORRECTING DEFECT 50 (vertices=5, convex hull=23, v0=133149)
- After retessellation of defect 50 (v0=133149), euler #=-9 (160853,482329,321467) : difference with theory (-9) = 0
- CORRECTING DEFECT 51 (vertices=29, convex hull=30, v0=137063)
- After retessellation of defect 51 (v0=137063), euler #=-8 (160861,482361,321492) : difference with theory (-8) = 0
- CORRECTING DEFECT 52 (vertices=37, convex hull=72, v0=140014)
- After retessellation of defect 52 (v0=140014), euler #=-7 (160874,482429,321548) : difference with theory (-7) = 0
- CORRECTING DEFECT 53 (vertices=15, convex hull=49, v0=142110)
- After retessellation of defect 53 (v0=142110), euler #=-6 (160884,482479,321589) : difference with theory (-6) = 0
- CORRECTING DEFECT 54 (vertices=23, convex hull=54, v0=145293)
- After retessellation of defect 54 (v0=145293), euler #=-5 (160893,482526,321628) : difference with theory (-5) = 0
- CORRECTING DEFECT 55 (vertices=39, convex hull=35, v0=146984)
- After retessellation of defect 55 (v0=146984), euler #=-4 (160898,482552,321650) : difference with theory (-4) = 0
- CORRECTING DEFECT 56 (vertices=26, convex hull=35, v0=148669)
- After retessellation of defect 56 (v0=148669), euler #=-3 (160902,482576,321671) : difference with theory (-3) = 0
- CORRECTING DEFECT 57 (vertices=53, convex hull=48, v0=154305)
- After retessellation of defect 57 (v0=154305), euler #=-2 (160906,482611,321703) : difference with theory (-2) = 0
- CORRECTING DEFECT 58 (vertices=43, convex hull=88, v0=154823)
- After retessellation of defect 58 (v0=154823), euler #=-1 (160920,482691,321770) : difference with theory (-1) = 0
- CORRECTING DEFECT 59 (vertices=39, convex hull=53, v0=158013)
- After retessellation of defect 59 (v0=158013), euler #=0 (160938,482769,321831) : difference with theory (0) = 0
- CORRECTING DEFECT 60 (vertices=40, convex hull=28, v0=161393)
- After retessellation of defect 60 (v0=161393), euler #=1 (160939,482780,321842) : difference with theory (1) = 0
- CORRECTING DEFECT 61 (vertices=47, convex hull=74, v0=161711)
- After retessellation of defect 61 (v0=161711), euler #=2 (160959,482871,321914) : difference with theory (2) = 0
- computing original vertex metric properties...
- storing new metric properties...
- computing tessellation statistics...
- vertex spacing 0.88 +- 0.25 (0.08-->15.22) (max @ vno 70146 --> 77563)
- face area 0.00 +- 0.00 (0.00-->0.00)
- performing soap bubble on retessellated vertices for 0 iterations...
- vertex spacing 0.88 +- 0.25 (0.08-->15.22) (max @ vno 70146 --> 77563)
- face area 0.00 +- 0.00 (0.00-->0.00)
- tessellation finished, orienting corrected surface...
- 227 mutations (36.3%), 398 crossovers (63.7%), 574 vertices were eliminated
- building final representation...
- 4047 vertices and 0 faces have been removed from triangulation
- after topology correction, eno=2 (nv=160959, nf=321914, ne=482871, g=0)
- writing corrected surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.orig...
- 0.000 % of the vertices (0 vertices) exhibit an orientation change
- topology fixing took 44.9 minutes
- 0 defective edges
- removing intersecting faces
- 000: 548 intersecting
- 001: 15 intersecting
- mris_fix_topology utimesec 2691.156881
- mris_fix_topology stimesec 0.202969
- mris_fix_topology ru_maxrss 525468
- mris_fix_topology ru_ixrss 0
- mris_fix_topology ru_idrss 0
- mris_fix_topology ru_isrss 0
- mris_fix_topology ru_minflt 60567
- mris_fix_topology ru_majflt 0
- mris_fix_topology ru_nswap 0
- mris_fix_topology ru_inblock 34656
- mris_fix_topology ru_oublock 15552
- mris_fix_topology ru_msgsnd 0
- mris_fix_topology ru_msgrcv 0
- mris_fix_topology ru_nsignals 0
- mris_fix_topology ru_nvcsw 607
- mris_fix_topology ru_nivcsw 5200
- FSRUNTIME@ mris_fix_topology rh 0.7476 hours 1 threads
- PIDs (19193 19196) completed and logs appended.
- mris_euler_number ../surf/lh.orig
- euler # = v-e+f = 2g-2: 159161 - 477477 + 318318 = 2 --> 0 holes
- F =2V-4: 318318 = 318322-4 (0)
- 2E=3F: 954954 = 954954 (0)
- total defect index = 0
- mris_euler_number ../surf/rh.orig
- euler # = v-e+f = 2g-2: 160959 - 482871 + 321914 = 2 --> 0 holes
- F =2V-4: 321914 = 321918-4 (0)
- 2E=3F: 965742 = 965742 (0)
- total defect index = 0
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_remove_intersection ../surf/lh.orig ../surf/lh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 137 intersecting
- 001: 22 intersecting
- writing corrected surface to ../surf/lh.orig
- rm ../surf/lh.inflated
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_remove_intersection ../surf/rh.orig ../surf/rh.orig
- intersection removal took 0.00 hours
- removing intersecting faces
- 000: 117 intersecting
- 001: 20 intersecting
- 002: 5 intersecting
- writing corrected surface to ../surf/rh.orig
- rm ../surf/rh.inflated
- #--------------------------------------------
- #@# Make White Surf lh Sat Oct 7 23:20:17 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050116 lh
- #--------------------------------------------
- #@# Make White Surf rh Sat Oct 7 23:20:17 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050116 rh
- Waiting for PID 21574 of (21574 21577) to complete...
- Waiting for PID 21577 of (21574 21577) to complete...
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050116 lh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- 34570 bright wm thresholded.
- 3394 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.orig...
- computing class statistics...
- border white: 294543 voxels (1.76%)
- border gray 350131 voxels (2.09%)
- WM (97.0): 97.0 +- 9.1 [70.0 --> 110.0]
- GM (69.0) : 68.9 +- 10.0 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 57.0 (was 70)
- setting MAX_BORDER_WHITE to 111.1 (was 105)
- setting MIN_BORDER_WHITE to 67.0 (was 85)
- setting MAX_CSF to 47.0 (was 40)
- setting MAX_GRAY to 92.9 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 57.0 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 36.9 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.81 +- 0.24 (0.03-->6.66) (max @ vno 77548 --> 157916)
- face area 0.27 +- 0.14 (0.00-->11.23)
- mean absolute distance = 0.63 +- 0.80
- 4258 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-8.7, GM=67+-7.0
- mean inside = 92.5, mean outside = 73.4
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- removing 1 vertex label from ripped group
- mean border=79.1, 79 (79) missing vertices, mean dist 0.2 [0.5 (%39.6)->0.7 (%60.4))]
- %74 local maxima, %22 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.26 (0.05-->6.44) (max @ vno 77548 --> 157916)
- face area 0.27 +- 0.14 (0.00-->9.46)
- mean absolute distance = 0.31 +- 0.51
- 4156 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3579648.0, rms=9.698
- 001: dt: 0.5000, sse=1979855.8, rms=6.636 (31.566%)
- 002: dt: 0.5000, sse=1417103.4, rms=5.088 (23.326%)
- 003: dt: 0.5000, sse=1196904.2, rms=4.337 (14.776%)
- 004: dt: 0.5000, sse=1096934.5, rms=3.954 (8.822%)
- 005: dt: 0.5000, sse=1058092.8, rms=3.794 (4.060%)
- 006: dt: 0.5000, sse=1039976.8, rms=3.695 (2.602%)
- rms = 3.66, time step reduction 1 of 3 to 0.250...
- 007: dt: 0.5000, sse=1028538.8, rms=3.658 (0.989%)
- 008: dt: 0.2500, sse=817607.1, rms=2.452 (32.974%)
- 009: dt: 0.2500, sse=771960.1, rms=2.094 (14.606%)
- 010: dt: 0.2500, sse=762291.8, rms=2.005 (4.222%)
- 011: dt: 0.2500, sse=751357.1, rms=1.946 (2.973%)
- rms = 1.92, time step reduction 2 of 3 to 0.125...
- 012: dt: 0.2500, sse=754896.2, rms=1.920 (1.321%)
- 013: dt: 0.1250, sse=740514.8, rms=1.850 (3.640%)
- rms = 1.84, time step reduction 3 of 3 to 0.062...
- 014: dt: 0.1250, sse=739655.9, rms=1.839 (0.614%)
- positioning took 1.7 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 2 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=82.2, 99 (14) missing vertices, mean dist -0.2 [0.3 (%73.5)->0.3 (%26.5))]
- %84 local maxima, %12 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.89 +- 0.26 (0.02-->6.26) (max @ vno 77548 --> 157916)
- face area 0.34 +- 0.17 (0.00-->11.82)
- mean absolute distance = 0.23 +- 0.36
- 3411 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1389203.1, rms=4.429
- 015: dt: 0.5000, sse=1081437.2, rms=3.079 (30.475%)
- rms = 3.38, time step reduction 1 of 3 to 0.250...
- 016: dt: 0.2500, sse=952153.6, rms=2.298 (25.382%)
- 017: dt: 0.2500, sse=900237.2, rms=1.881 (18.131%)
- 018: dt: 0.2500, sse=880337.1, rms=1.722 (8.436%)
- 019: dt: 0.2500, sse=877661.0, rms=1.668 (3.154%)
- rms = 1.63, time step reduction 2 of 3 to 0.125...
- 020: dt: 0.2500, sse=870739.8, rms=1.630 (2.282%)
- 021: dt: 0.1250, sse=865054.6, rms=1.571 (3.647%)
- rms = 1.56, time step reduction 3 of 3 to 0.062...
- 022: dt: 0.1250, sse=865809.0, rms=1.563 (0.449%)
- positioning took 1.0 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=83.9, 111 (7) missing vertices, mean dist -0.1 [0.2 (%65.6)->0.2 (%34.4))]
- %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.89 +- 0.26 (0.02-->6.32) (max @ vno 77548 --> 157915)
- face area 0.33 +- 0.17 (0.00-->11.59)
- mean absolute distance = 0.21 +- 0.32
- 3273 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=998649.3, rms=2.698
- rms = 2.80, time step reduction 1 of 3 to 0.250...
- 023: dt: 0.2500, sse=893240.6, rms=1.976 (26.740%)
- 024: dt: 0.2500, sse=850109.5, rms=1.532 (22.477%)
- 025: dt: 0.2500, sse=840210.3, rms=1.460 (4.675%)
- rms = 1.45, time step reduction 2 of 3 to 0.125...
- 026: dt: 0.2500, sse=842816.8, rms=1.454 (0.464%)
- 027: dt: 0.1250, sse=833031.5, rms=1.391 (4.326%)
- rms = 1.39, time step reduction 3 of 3 to 0.062...
- 028: dt: 0.1250, sse=831735.9, rms=1.390 (0.052%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 1 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 2 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- mean border=84.5, 158 (7) missing vertices, mean dist -0.0 [0.2 (%53.8)->0.2 (%46.2))]
- %91 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white.preaparc...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=845788.4, rms=1.600
- rms = 1.78, time step reduction 1 of 3 to 0.250...
- 029: dt: 0.2500, sse=811054.9, rms=1.207 (24.559%)
- 030: dt: 0.2500, sse=801268.3, rms=1.048 (13.151%)
- rms = 1.06, time step reduction 2 of 3 to 0.125...
- rms = 1.04, time step reduction 3 of 3 to 0.062...
- 031: dt: 0.1250, sse=801401.2, rms=1.044 (0.363%)
- positioning took 0.5 minutes
- generating cortex label...
- 13 non-cortical segments detected
- only using segment with 6509 vertices
- erasing segment 1 (vno[0] = 68634)
- erasing segment 2 (vno[0] = 85000)
- erasing segment 3 (vno[0] = 103315)
- erasing segment 4 (vno[0] = 106112)
- erasing segment 5 (vno[0] = 110853)
- erasing segment 6 (vno[0] = 112138)
- erasing segment 7 (vno[0] = 114127)
- erasing segment 8 (vno[0] = 114512)
- erasing segment 9 (vno[0] = 115622)
- erasing segment 10 (vno[0] = 117631)
- erasing segment 11 (vno[0] = 117960)
- erasing segment 12 (vno[0] = 118043)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.area
- vertex spacing 0.89 +- 0.26 (0.02-->6.26) (max @ vno 77548 --> 157915)
- face area 0.33 +- 0.17 (0.00-->11.39)
- refinement took 6.2 minutes
- mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs 0050116 rh
- using white.preaparc as white matter name...
- only generating white matter surface
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- not using aparc to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- 34570 bright wm thresholded.
- 3394 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.orig...
- computing class statistics...
- border white: 294543 voxels (1.76%)
- border gray 350131 voxels (2.09%)
- WM (97.0): 97.0 +- 9.1 [70.0 --> 110.0]
- GM (69.0) : 68.9 +- 10.0 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 57.0 (was 70)
- setting MAX_BORDER_WHITE to 111.1 (was 105)
- setting MIN_BORDER_WHITE to 67.0 (was 85)
- setting MAX_CSF to 47.0 (was 40)
- setting MAX_GRAY to 92.9 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 57.0 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 36.9 (was 40)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.81 +- 0.23 (0.03-->6.51) (max @ vno 123412 --> 160685)
- face area 0.27 +- 0.13 (0.00-->6.75)
- mean absolute distance = 0.62 +- 0.80
- 3641 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-8.7, GM=67+-7.0
- mean inside = 92.0, mean outside = 72.6
- smoothing surface for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 2 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=78.8, 52 (52) missing vertices, mean dist 0.2 [0.6 (%41.5)->0.7 (%58.5))]
- %71 local maxima, %25 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.25 (0.10-->7.75) (max @ vno 70146 --> 80036)
- face area 0.27 +- 0.13 (0.00-->6.95)
- mean absolute distance = 0.31 +- 0.52
- 4034 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=3645927.8, rms=9.794
- 001: dt: 0.5000, sse=2028245.6, rms=6.713 (31.456%)
- 002: dt: 0.5000, sse=1448414.8, rms=5.159 (23.148%)
- 003: dt: 0.5000, sse=1221478.9, rms=4.399 (14.727%)
- 004: dt: 0.5000, sse=1120700.2, rms=4.009 (8.870%)
- 005: dt: 0.5000, sse=1085124.9, rms=3.869 (3.501%)
- 006: dt: 0.5000, sse=1066156.5, rms=3.774 (2.459%)
- rms = 3.76, time step reduction 1 of 3 to 0.250...
- 007: dt: 0.5000, sse=1063607.0, rms=3.762 (0.310%)
- 008: dt: 0.2500, sse=829456.4, rms=2.484 (33.976%)
- 009: dt: 0.2500, sse=777467.4, rms=2.113 (14.918%)
- 010: dt: 0.2500, sse=765405.4, rms=2.010 (4.886%)
- 011: dt: 0.2500, sse=759342.6, rms=1.957 (2.647%)
- rms = 1.92, time step reduction 2 of 3 to 0.125...
- 012: dt: 0.2500, sse=755255.6, rms=1.918 (1.997%)
- 013: dt: 0.1250, sse=744727.4, rms=1.832 (4.484%)
- rms = 1.82, time step reduction 3 of 3 to 0.062...
- 014: dt: 0.1250, sse=743161.2, rms=1.816 (0.863%)
- positioning took 1.7 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=81.9, 101 (10) missing vertices, mean dist -0.2 [0.3 (%73.1)->0.2 (%26.9))]
- %82 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.89 +- 0.25 (0.08-->8.18) (max @ vno 70146 --> 80036)
- face area 0.34 +- 0.16 (0.00-->9.49)
- mean absolute distance = 0.23 +- 0.36
- 4140 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1377917.0, rms=4.363
- 015: dt: 0.5000, sse=1103460.1, rms=3.146 (27.879%)
- rms = 3.49, time step reduction 1 of 3 to 0.250...
- 016: dt: 0.2500, sse=954860.5, rms=2.309 (26.605%)
- 017: dt: 0.2500, sse=905700.9, rms=1.889 (18.191%)
- 018: dt: 0.2500, sse=882114.4, rms=1.735 (8.184%)
- 019: dt: 0.2500, sse=877458.4, rms=1.669 (3.754%)
- rms = 1.63, time step reduction 2 of 3 to 0.125...
- 020: dt: 0.2500, sse=873739.9, rms=1.629 (2.443%)
- 021: dt: 0.1250, sse=865433.2, rms=1.566 (3.833%)
- rms = 1.56, time step reduction 3 of 3 to 0.062...
- 022: dt: 0.1250, sse=868360.3, rms=1.560 (0.412%)
- positioning took 1.0 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- mean border=83.6, 102 (5) missing vertices, mean dist -0.1 [0.2 (%65.5)->0.2 (%34.5))]
- %87 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.89 +- 0.25 (0.07-->8.33) (max @ vno 70146 --> 80036)
- face area 0.33 +- 0.16 (0.00-->9.70)
- mean absolute distance = 0.22 +- 0.32
- 3258 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1012992.2, rms=2.750
- rms = 2.89, time step reduction 1 of 3 to 0.250...
- 023: dt: 0.2500, sse=907616.1, rms=2.018 (26.624%)
- 024: dt: 0.2500, sse=862386.8, rms=1.555 (22.950%)
- 025: dt: 0.2500, sse=846888.6, rms=1.490 (4.180%)
- rms = 1.47, time step reduction 2 of 3 to 0.125...
- 026: dt: 0.2500, sse=844515.9, rms=1.468 (1.473%)
- 027: dt: 0.1250, sse=838183.9, rms=1.405 (4.307%)
- rms = 1.40, time step reduction 3 of 3 to 0.062...
- 028: dt: 0.1250, sse=836731.0, rms=1.395 (0.660%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- removing 3 vertex label from ripped group
- removing 4 vertex label from ripped group
- removing 1 vertex label from ripped group
- mean border=84.3, 133 (1) missing vertices, mean dist -0.0 [0.2 (%53.8)->0.2 (%46.2))]
- %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white.preaparc...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=853889.7, rms=1.629
- rms = 1.83, time step reduction 1 of 3 to 0.250...
- 029: dt: 0.2500, sse=820699.1, rms=1.219 (25.134%)
- 030: dt: 0.2500, sse=809628.2, rms=1.051 (13.808%)
- rms = 1.07, time step reduction 2 of 3 to 0.125...
- rms = 1.05, time step reduction 3 of 3 to 0.062...
- 031: dt: 0.1250, sse=804117.6, rms=1.046 (0.439%)
- positioning took 0.5 minutes
- generating cortex label...
- 13 non-cortical segments detected
- only using segment with 7120 vertices
- erasing segment 1 (vno[0] = 77122)
- erasing segment 2 (vno[0] = 82909)
- erasing segment 3 (vno[0] = 105231)
- erasing segment 4 (vno[0] = 114069)
- erasing segment 5 (vno[0] = 119005)
- erasing segment 6 (vno[0] = 120104)
- erasing segment 7 (vno[0] = 120226)
- erasing segment 8 (vno[0] = 123303)
- erasing segment 9 (vno[0] = 129251)
- erasing segment 10 (vno[0] = 133153)
- erasing segment 11 (vno[0] = 135986)
- erasing segment 12 (vno[0] = 160583)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.area
- vertex spacing 0.89 +- 0.26 (0.03-->8.41) (max @ vno 70146 --> 80036)
- face area 0.33 +- 0.16 (0.00-->9.91)
- refinement took 6.1 minutes
- PIDs (21574 21577) completed and logs appended.
- #--------------------------------------------
- #@# Smooth2 lh Sat Oct 7 23:26:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- #--------------------------------------------
- #@# Smooth2 rh Sat Oct 7 23:26:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- Waiting for PID 21834 of (21834 21837) to complete...
- Waiting for PID 21837 of (21834 21837) to complete...
- mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white.preaparc ../surf/lh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm
- smoothing for 3 iterations
- setting seed for random number generator to 1234
- smoothing surface tessellation for 3 iterations...
- smoothing complete - recomputing first and second fundamental forms...
- PIDs (21834 21837) completed and logs appended.
- #--------------------------------------------
- #@# Inflation2 lh Sat Oct 7 23:26:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- #--------------------------------------------
- #@# Inflation2 rh Sat Oct 7 23:26:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Waiting for PID 21882 of (21882 21885) to complete...
- Waiting for PID 21885 of (21882 21885) to complete...
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_inflate.lh.dat ../surf/lh.smoothwm ../surf/lh.inflated
- Reading ../surf/lh.smoothwm
- avg radius = 47.7 mm, total surface area = 94856 mm^2
- writing inflated surface to ../surf/lh.inflated
- writing sulcal depths to ../surf/lh.sulc
-
step 000: RMS=0.184 (target=0.015)
step 005: RMS=0.129 (target=0.015)
step 010: RMS=0.095 (target=0.015)
step 015: RMS=0.079 (target=0.015)
step 020: RMS=0.067 (target=0.015)
step 025: RMS=0.056 (target=0.015)
step 030: RMS=0.048 (target=0.015)
step 035: RMS=0.040 (target=0.015)
step 040: RMS=0.034 (target=0.015)
step 045: RMS=0.031 (target=0.015)
step 050: RMS=0.028 (target=0.015)
step 055: RMS=0.025 (target=0.015)
step 060: RMS=0.023 (target=0.015)
- inflation complete.
- inflation took 0.9 minutes
- mris_inflate utimesec 51.364191
- mris_inflate stimesec 0.132979
- mris_inflate ru_maxrss 233308
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 33863
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 11200
- mris_inflate ru_oublock 12464
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2223
- mris_inflate ru_nivcsw 3670
- mris_inflate -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_inflate.rh.dat ../surf/rh.smoothwm ../surf/rh.inflated
- Reading ../surf/rh.smoothwm
- avg radius = 48.5 mm, total surface area = 95985 mm^2
- writing inflated surface to ../surf/rh.inflated
- writing sulcal depths to ../surf/rh.sulc
-
step 000: RMS=0.181 (target=0.015)
step 005: RMS=0.127 (target=0.015)
step 010: RMS=0.094 (target=0.015)
step 015: RMS=0.078 (target=0.015)
step 020: RMS=0.065 (target=0.015)
step 025: RMS=0.054 (target=0.015)
step 030: RMS=0.045 (target=0.015)
step 035: RMS=0.038 (target=0.015)
step 040: RMS=0.033 (target=0.015)
step 045: RMS=0.029 (target=0.015)
step 050: RMS=0.026 (target=0.015)
step 055: RMS=0.024 (target=0.015)
step 060: RMS=0.023 (target=0.015)
- inflation complete.
- inflation took 0.9 minutes
- mris_inflate utimesec 52.064085
- mris_inflate stimesec 0.135979
- mris_inflate ru_maxrss 235228
- mris_inflate ru_ixrss 0
- mris_inflate ru_idrss 0
- mris_inflate ru_isrss 0
- mris_inflate ru_minflt 34342
- mris_inflate ru_majflt 0
- mris_inflate ru_nswap 0
- mris_inflate ru_inblock 11328
- mris_inflate ru_oublock 12608
- mris_inflate ru_msgsnd 0
- mris_inflate ru_msgrcv 0
- mris_inflate ru_nsignals 0
- mris_inflate ru_nvcsw 2211
- mris_inflate ru_nivcsw 3776
- PIDs (21882 21885) completed and logs appended.
- #--------------------------------------------
- #@# Curv .H and .K lh Sat Oct 7 23:27:28 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- mris_curvature -w lh.white.preaparc
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- #--------------------------------------------
- #@# Curv .H and .K rh Sat Oct 7 23:27:28 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- mris_curvature -w rh.white.preaparc
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- reconbatchjobs /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts/recon-all.log mris_curvature_white_lh.cmd rm_curvature_white_lh.H.cmd ln_curvature_white_lh.H.cmd rm_curvature_white_lh.K.cmd ln_curvature_white_lh.K.cmd mris_curvature_inflated_lh.cmd mris_curvature_white_rh.cmd rm_curvature_white_rh.H.cmd ln_curvature_white_rh.H.cmd rm_curvature_white_rh.K.cmd ln_curvature_white_rh.K.cmd mris_curvature_inflated_rh.cmd
- Waiting for PID 21983 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 21986 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 21989 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 21992 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 21995 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 21998 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 22001 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 22004 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 22007 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 22010 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 22013 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- Waiting for PID 22017 of (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) to complete...
- mris_curvature -w lh.white.preaparc
- total integrated curvature = -10.419*4pi (-130.929) --> 11 handles
- ICI = 218.3, FI = 2188.9, variation=35075.950
- writing Gaussian curvature to ./lh.white.preaparc.K...done.
- writing mean curvature to ./lh.white.preaparc.H...done.
- rm -f lh.white.H
- ln -s lh.white.preaparc.H lh.white.H
- rm -f lh.white.K
- ln -s lh.white.preaparc.K lh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 lh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 214 vertices thresholded to be in k1 ~ [-0.21 0.96], k2 ~ [-0.08 0.06]
- total integrated curvature = 0.526*4pi (6.608) --> 0 handles
- ICI = 1.6, FI = 10.9, variation=182.370
- 129 vertices thresholded to be in [-0.02 0.01]
- writing Gaussian curvature to ./lh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 136 vertices thresholded to be in [-0.12 0.24]
- done.
- writing mean curvature to ./lh.inflated.H...curvature mean = -0.015, std = 0.023
- done.
- mris_curvature -w rh.white.preaparc
- total integrated curvature = -9.653*4pi (-121.298) --> 11 handles
- ICI = 211.7, FI = 2151.9, variation=34373.309
- writing Gaussian curvature to ./rh.white.preaparc.K...done.
- writing mean curvature to ./rh.white.preaparc.H...done.
- rm -f rh.white.H
- ln -s rh.white.preaparc.H rh.white.H
- rm -f rh.white.K
- ln -s rh.white.preaparc.K rh.white.K
- mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated
- normalizing curvature values.
- averaging curvature patterns 5 times.
- sampling 10 neighbors out to a distance of 10 mm
- 214 vertices thresholded to be in k1 ~ [-0.33 0.33], k2 ~ [-0.09 0.06]
- total integrated curvature = 0.502*4pi (6.310) --> 0 handles
- ICI = 1.6, FI = 11.9, variation=193.569
- 160 vertices thresholded to be in [-0.01 0.02]
- writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level
- curvature mean = 0.000, std = 0.001
- 157 vertices thresholded to be in [-0.16 0.17]
- done.
- writing mean curvature to ./rh.inflated.H...curvature mean = -0.015, std = 0.024
- done.
- PIDs (21983 21986 21989 21992 21995 21998 22001 22004 22007 22010 22013 22017) completed and logs appended.
- #-----------------------------------------
- #@# Curvature Stats lh Sat Oct 7 23:29:05 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm 0050116 lh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/lh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0050116/lh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 327 ]
- Gb_filter = 0
- WARN: k2 lookup min: -21.196692
- WARN: k2 explicit min: -15.742968 vertex = 106310
- WARN: S lookup min: -3.614509
- WARN: S explicit min: 0.000000 vertex = 291
- WARN: C lookup max: 309.133118
- WARN: C explicit max: 64.570312 vertex = 111028
- #-----------------------------------------
- #@# Curvature Stats rh Sat Oct 7 23:29:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm 0050116 rh curv sulc
- Toggling save flag on curvature files [ ok ]
- Outputting results using filestem [ ../stats/rh.curv.stats ]
- Toggling save flag on curvature files [ ok ]
- Setting surface [ 0050116/rh.smoothwm ]
- Reading surface... [ ok ]
- Setting texture [ curv ]
- Reading texture... [ ok ]
- Setting texture [ sulc ]
- Reading texture...Gb_filter = 0
- [ ok ]
- Calculating Discrete Principal Curvatures...
- Determining geometric order for vertex faces... [####################] [ ok ]
- Determining KH curvatures... [####################] [ ok ]
- Determining k1k2 curvatures... [####################] [ ok ]
- deltaViolations [ 276 ]
- Gb_filter = 0
- WARN: S lookup min: -1.476595
- WARN: S explicit min: 0.000000 vertex = 43
- #--------------------------------------------
- #@# Sphere lh Sat Oct 7 23:29:16 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- #--------------------------------------------
- #@# Sphere rh Sat Oct 7 23:29:16 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- Waiting for PID 22173 of (22173 22177) to complete...
- Waiting for PID 22177 of (22173 22177) to complete...
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_sphere.lh.dat -seed 1234 ../surf/lh.inflated ../surf/lh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.269...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 1234
- singular matrix in quadratic form
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %20.79
- pass 1: epoch 2 of 3 starting distance error %20.78
- unfolding complete - removing small folds...
- starting distance error %20.72
- removing remaining folds...
- final distance error %20.74
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 304 negative triangles
- 198: dt=0.9900, 304 negative triangles
- 199: dt=0.9900, 96 negative triangles
- 200: dt=0.9900, 63 negative triangles
- 201: dt=0.9900, 43 negative triangles
- 202: dt=0.9900, 35 negative triangles
- 203: dt=0.9900, 29 negative triangles
- 204: dt=0.9900, 32 negative triangles
- 205: dt=0.9900, 26 negative triangles
- 206: dt=0.9900, 21 negative triangles
- 207: dt=0.9900, 16 negative triangles
- 208: dt=0.9900, 14 negative triangles
- 209: dt=0.9900, 11 negative triangles
- 210: dt=0.9900, 15 negative triangles
- 211: dt=0.9900, 10 negative triangles
- 212: dt=0.9900, 11 negative triangles
- 213: dt=0.9900, 6 negative triangles
- 214: dt=0.9900, 9 negative triangles
- 215: dt=0.9900, 6 negative triangles
- 216: dt=0.9900, 9 negative triangles
- 217: dt=0.9900, 7 negative triangles
- 218: dt=0.9900, 6 negative triangles
- 219: dt=0.9900, 4 negative triangles
- 220: dt=0.9900, 2 negative triangles
- 221: dt=0.9900, 3 negative triangles
- 222: dt=0.9900, 4 negative triangles
- 223: dt=0.9900, 2 negative triangles
- 224: dt=0.9900, 1 negative triangles
- 225: dt=0.9900, 3 negative triangles
- 226: dt=0.9900, 3 negative triangles
- 227: dt=0.9900, 2 negative triangles
- 228: dt=0.9900, 3 negative triangles
- writing spherical brain to ../surf/lh.sphere
- spherical transformation took 1.08 hours
- mris_sphere utimesec 3874.342010
- mris_sphere stimesec 1.836720
- mris_sphere ru_maxrss 327164
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 57476
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 11256
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 132430
- mris_sphere ru_nivcsw 306581
- FSRUNTIME@ mris_sphere 1.0772 hours 1 threads
- mris_sphere -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere
- setting seed for random number genererator to 1234
- $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading original vertex positions...
- unfolding cortex into spherical form...
- surface projected - minimizing metric distortion...
- == Number of threads available to mris_sphere for OpenMP = 2 ==
- scaling brain by 0.265...
- MRISunfold() max_passes = 1 -------
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 1.000000
- desired_rms_height -1.000000
- momentum 0.900000
- nbhd_size 7
- max_nbrs 8
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 1234
- --------------------
- mrisRemoveNegativeArea()
- pass 1: epoch 1 of 3 starting distance error %20.39
- pass 1: epoch 2 of 3 starting distance error %20.38
- unfolding complete - removing small folds...
- starting distance error %20.34
- removing remaining folds...
- final distance error %20.35
- MRISunfold() return, current seed 1234
- -01: dt=0.0000, 274 negative triangles
- 176: dt=0.9900, 274 negative triangles
- 177: dt=0.9900, 151 negative triangles
- 178: dt=0.9900, 120 negative triangles
- 179: dt=0.9900, 98 negative triangles
- 180: dt=0.9900, 96 negative triangles
- 181: dt=0.9900, 90 negative triangles
- 182: dt=0.9900, 86 negative triangles
- 183: dt=0.9900, 83 negative triangles
- 184: dt=0.9900, 81 negative triangles
- 185: dt=0.9900, 74 negative triangles
- 186: dt=0.9900, 80 negative triangles
- 187: dt=0.9900, 74 negative triangles
- 188: dt=0.9900, 67 negative triangles
- 189: dt=0.9900, 70 negative triangles
- 190: dt=0.9900, 65 negative triangles
- 191: dt=0.9900, 64 negative triangles
- 192: dt=0.9900, 69 negative triangles
- 193: dt=0.9900, 56 negative triangles
- 194: dt=0.9900, 57 negative triangles
- 195: dt=0.9900, 55 negative triangles
- 196: dt=0.9900, 56 negative triangles
- 197: dt=0.9900, 54 negative triangles
- 198: dt=0.9900, 53 negative triangles
- 199: dt=0.9900, 41 negative triangles
- 200: dt=0.9900, 38 negative triangles
- 201: dt=0.9900, 36 negative triangles
- 202: dt=0.9900, 34 negative triangles
- 203: dt=0.9900, 35 negative triangles
- 204: dt=0.9900, 35 negative triangles
- 205: dt=0.9900, 32 negative triangles
- 206: dt=0.9900, 23 negative triangles
- 207: dt=0.9900, 21 negative triangles
- 208: dt=0.9900, 22 negative triangles
- 209: dt=0.9900, 14 negative triangles
- 210: dt=0.9900, 15 negative triangles
- 211: dt=0.9900, 17 negative triangles
- 212: dt=0.9900, 19 negative triangles
- 213: dt=0.9900, 15 negative triangles
- 214: dt=0.9900, 14 negative triangles
- 215: dt=0.9900, 10 negative triangles
- 216: dt=0.9900, 13 negative triangles
- 217: dt=0.9900, 9 negative triangles
- 218: dt=0.9900, 7 negative triangles
- 219: dt=0.9900, 7 negative triangles
- 220: dt=0.9900, 11 negative triangles
- 221: dt=0.9900, 10 negative triangles
- 222: dt=0.9900, 12 negative triangles
- 223: dt=0.9900, 10 negative triangles
- 224: dt=0.9900, 4 negative triangles
- 225: dt=0.9900, 6 negative triangles
- 226: dt=0.9900, 5 negative triangles
- 227: dt=0.9900, 3 negative triangles
- 228: dt=0.9900, 6 negative triangles
- 229: dt=0.9900, 5 negative triangles
- 230: dt=0.9900, 3 negative triangles
- 231: dt=0.9900, 3 negative triangles
- 232: dt=0.9900, 4 negative triangles
- 233: dt=0.9900, 1 negative triangles
- writing spherical brain to ../surf/rh.sphere
- spherical transformation took 1.08 hours
- mris_sphere utimesec 3906.850068
- mris_sphere stimesec 1.662747
- mris_sphere ru_maxrss 330408
- mris_sphere ru_ixrss 0
- mris_sphere ru_idrss 0
- mris_sphere ru_isrss 0
- mris_sphere ru_minflt 58280
- mris_sphere ru_majflt 0
- mris_sphere ru_nswap 0
- mris_sphere ru_inblock 0
- mris_sphere ru_oublock 11392
- mris_sphere ru_msgsnd 0
- mris_sphere ru_msgrcv 0
- mris_sphere ru_nsignals 0
- mris_sphere ru_nvcsw 116331
- mris_sphere ru_nivcsw 318059
- FSRUNTIME@ mris_sphere 1.0812 hours 1 threads
- PIDs (22173 22177) completed and logs appended.
- #--------------------------------------------
- #@# Surf Reg lh Sun Oct 8 00:34:08 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- #--------------------------------------------
- #@# Surf Reg rh Sun Oct 8 00:34:08 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- Waiting for PID 27891 of (27891 27894) to complete...
- Waiting for PID 27894 of (27891 27894) to complete...
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_register.lh.dat ../surf/lh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/lh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/lh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 0
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading lh.sulc
- curvature mean = -0.000, std = 5.657
- curvature mean = 0.020, std = 0.814
- curvature mean = 0.021, std = 0.851
- Starting MRISrigidBodyAlignGlobal()
- d=32.00 min @ (0.00, -8.00, 0.00) sse = 293209.0, tmin=2.4647
- d=8.00 min @ (0.00, 2.00, 0.00) sse = 292128.0, tmin=5.0309
- d=4.00 min @ (-1.00, -1.00, 0.00) sse = 289344.5, tmin=6.3040
- d=2.00 min @ (0.00, 0.00, 0.50) sse = 289150.0, tmin=7.5824
- d=1.00 min @ (0.25, 0.00, 0.00) sse = 289116.3, tmin=8.8741
- d=0.50 min @ (-0.12, 0.00, -0.12) sse = 289081.0, tmin=10.1652
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 10.17 min
- curvature mean = -0.003, std = 0.815
- curvature mean = 0.009, std = 0.938
- curvature mean = -0.006, std = 0.826
- curvature mean = 0.004, std = 0.974
- curvature mean = -0.008, std = 0.828
- curvature mean = 0.001, std = 0.989
- 2 Reading smoothwm
- curvature mean = -0.029, std = 0.335
- curvature mean = 0.038, std = 0.245
- curvature mean = 0.072, std = 0.284
- curvature mean = 0.035, std = 0.303
- curvature mean = 0.044, std = 0.449
- curvature mean = 0.035, std = 0.330
- curvature mean = 0.025, std = 0.584
- curvature mean = 0.035, std = 0.341
- curvature mean = 0.010, std = 0.701
- MRISregister() return, current seed 0
- -01: dt=0.0000, 80 negative triangles
- 124: dt=0.9900, 80 negative triangles
- expanding nbhd size to 1
- 125: dt=0.9900, 119 negative triangles
- 126: dt=0.9900, 88 negative triangles
- 127: dt=0.9900, 68 negative triangles
- 128: dt=0.9900, 69 negative triangles
- 129: dt=0.9900, 54 negative triangles
- 130: dt=0.9900, 60 negative triangles
- 131: dt=0.9900, 42 negative triangles
- 132: dt=0.9900, 38 negative triangles
- 133: dt=0.9900, 35 negative triangles
- 134: dt=0.9900, 33 negative triangles
- 135: dt=0.9900, 30 negative triangles
- 136: dt=0.9900, 25 negative triangles
- 137: dt=0.9900, 22 negative triangles
- 138: dt=0.9900, 17 negative triangles
- 139: dt=0.9900, 17 negative triangles
- 140: dt=0.9900, 13 negative triangles
- 141: dt=0.9900, 12 negative triangles
- 142: dt=0.9900, 7 negative triangles
- 143: dt=0.9900, 9 negative triangles
- 144: dt=0.9900, 9 negative triangles
- 145: dt=0.9900, 5 negative triangles
- 146: dt=0.9900, 5 negative triangles
- 147: dt=0.9900, 3 negative triangles
- 148: dt=0.9900, 4 negative triangles
- 149: dt=0.9900, 1 negative triangles
- writing registered surface to ../surf/lh.sphere.reg...
- registration took 1.68 hours
- mris_register utimesec 6025.808937
- mris_register stimesec 5.484166
- mris_register ru_maxrss 288296
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 40666
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 0
- mris_register ru_oublock 11280
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 397580
- mris_register ru_nivcsw 287108
- FSRUNTIME@ mris_register 1.6752 hours 1 threads
- mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- using smoothwm curvature for final alignment
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- cmdline mris_register -curv -rusage /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg
- 0 inflated.H
- 1 sulc
- 2 smoothwm (computed)
- $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading surface from ../surf/rh.sphere...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- MRISregister() -------
- max_passes = 4
- min_degrees = 0.500000
- max_degrees = 64.000000
- nangles = 8
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height -1.000000
- momentum 0.950000
- nbhd_size -10
- max_nbrs 10
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 16 (10)
- use curv 16
- no sulc 0
- no rigid align 0
- mris->nsize 1
- mris->hemisphere 1
- randomSeed 0
- tol=5.0e-01, sigma=0.0, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000
- using quadratic fit line minimization
- --------------------
- 1 Reading rh.sulc
- curvature mean = 0.000, std = 5.676
- curvature mean = 0.021, std = 0.815
- curvature mean = 0.022, std = 0.848
- Starting MRISrigidBodyAlignGlobal()
- d=32.00 min @ (0.00, 0.00, 8.00) sse = 322655.2, tmin=2.4855
- d=16.00 min @ (0.00, 0.00, -4.00) sse = 320212.4, tmin=3.7757
- d=8.00 min @ (2.00, 0.00, 2.00) sse = 311444.6, tmin=5.0912
- d=4.00 min @ (-1.00, 0.00, 0.00) sse = 310757.2, tmin=6.3995
- d=2.00 min @ (0.00, -0.50, 0.00) sse = 310214.9, tmin=7.7061
- d=1.00 min @ (0.00, 0.00, -0.25) sse = 310093.2, tmin=9.0229
- d=0.50 min @ (-0.12, 0.00, 0.00) sse = 310085.6, tmin=10.3338
- tol=1.0e+00, sigma=0.5, host=tars-, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000
- using quadratic fit line minimization
- MRISrigidBodyAlignGlobal() done 10.33 min
- curvature mean = -0.002, std = 0.815
- curvature mean = 0.011, std = 0.939
- curvature mean = -0.008, std = 0.821
- curvature mean = 0.004, std = 0.974
- curvature mean = -0.010, std = 0.821
- curvature mean = 0.001, std = 0.990
- 2 Reading smoothwm
- curvature mean = -0.026, std = 0.331
- curvature mean = 0.034, std = 0.239
- curvature mean = 0.071, std = 0.286
- curvature mean = 0.030, std = 0.296
- curvature mean = 0.039, std = 0.454
- curvature mean = 0.029, std = 0.322
- curvature mean = 0.022, std = 0.584
- curvature mean = 0.029, std = 0.334
- curvature mean = 0.008, std = 0.692
- MRISregister() return, current seed 0
- -01: dt=0.0000, 108 negative triangles
- 125: dt=0.9900, 108 negative triangles
- expanding nbhd size to 1
- 126: dt=0.9900, 147 negative triangles
- 127: dt=0.9900, 100 negative triangles
- 128: dt=0.9900, 100 negative triangles
- 129: dt=0.9900, 98 negative triangles
- 130: dt=0.9900, 93 negative triangles
- 131: dt=0.9900, 95 negative triangles
- 132: dt=0.9900, 90 negative triangles
- 133: dt=0.9900, 84 negative triangles
- 134: dt=0.9900, 77 negative triangles
- 135: dt=0.9900, 70 negative triangles
- 136: dt=0.9900, 66 negative triangles
- 137: dt=0.9900, 66 negative triangles
- 138: dt=0.9900, 58 negative triangles
- 139: dt=0.9900, 61 negative triangles
- 140: dt=0.9900, 59 negative triangles
- 141: dt=0.9900, 60 negative triangles
- 142: dt=0.9900, 54 negative triangles
- 143: dt=0.9900, 58 negative triangles
- 144: dt=0.9900, 53 negative triangles
- 145: dt=0.9900, 51 negative triangles
- 146: dt=0.9900, 50 negative triangles
- 147: dt=0.9900, 57 negative triangles
- 148: dt=0.9900, 56 negative triangles
- 149: dt=0.9900, 51 negative triangles
- 150: dt=0.9900, 44 negative triangles
- 151: dt=0.9900, 51 negative triangles
- 152: dt=0.9900, 47 negative triangles
- 153: dt=0.9900, 39 negative triangles
- 154: dt=0.9900, 39 negative triangles
- 155: dt=0.9900, 35 negative triangles
- 156: dt=0.9900, 40 negative triangles
- 157: dt=0.9900, 35 negative triangles
- 158: dt=0.9900, 36 negative triangles
- 159: dt=0.9900, 34 negative triangles
- 160: dt=0.9900, 30 negative triangles
- 161: dt=0.9900, 29 negative triangles
- 162: dt=0.9900, 30 negative triangles
- 163: dt=0.9900, 29 negative triangles
- 164: dt=0.9900, 29 negative triangles
- 165: dt=0.9900, 26 negative triangles
- 166: dt=0.9900, 29 negative triangles
- 167: dt=0.9900, 28 negative triangles
- 168: dt=0.9900, 30 negative triangles
- 169: dt=0.9900, 25 negative triangles
- 170: dt=0.9900, 22 negative triangles
- 171: dt=0.9900, 20 negative triangles
- 172: dt=0.9900, 22 negative triangles
- 173: dt=0.9900, 23 negative triangles
- 174: dt=0.9900, 23 negative triangles
- 175: dt=0.9900, 20 negative triangles
- 176: dt=0.9900, 23 negative triangles
- 177: dt=0.9900, 19 negative triangles
- 178: dt=0.9900, 20 negative triangles
- 179: dt=0.9900, 19 negative triangles
- 180: dt=0.9900, 20 negative triangles
- 181: dt=0.9900, 17 negative triangles
- 182: dt=0.9900, 16 negative triangles
- 183: dt=0.9900, 17 negative triangles
- 184: dt=0.9900, 18 negative triangles
- 185: dt=0.9900, 17 negative triangles
- 186: dt=0.9900, 13 negative triangles
- 187: dt=0.9900, 13 negative triangles
- 188: dt=0.9900, 12 negative triangles
- 189: dt=0.9900, 14 negative triangles
- 190: dt=0.9900, 12 negative triangles
- 191: dt=0.9900, 15 negative triangles
- 192: dt=0.9900, 12 negative triangles
- 193: dt=0.9900, 11 negative triangles
- 194: dt=0.9900, 12 negative triangles
- 195: dt=0.9900, 13 negative triangles
- 196: dt=0.9900, 11 negative triangles
- 197: dt=0.9900, 8 negative triangles
- 198: dt=0.9900, 8 negative triangles
- 199: dt=0.9900, 7 negative triangles
- 200: dt=0.9900, 9 negative triangles
- 201: dt=0.9900, 7 negative triangles
- 202: dt=0.9900, 5 negative triangles
- 203: dt=0.9900, 5 negative triangles
- 204: dt=0.9900, 5 negative triangles
- 205: dt=0.9900, 5 negative triangles
- 206: dt=0.9900, 2 negative triangles
- 207: dt=0.9900, 2 negative triangles
- 208: dt=0.9900, 2 negative triangles
- 209: dt=0.9900, 1 negative triangles
- 210: dt=0.9900, 1 negative triangles
- 211: dt=0.9900, 1 negative triangles
- 212: dt=0.9900, 1 negative triangles
- writing registered surface to ../surf/rh.sphere.reg...
- registration took 1.71 hours
- mris_register utimesec 6233.436373
- mris_register stimesec 6.021084
- mris_register ru_maxrss 291980
- mris_register ru_ixrss 0
- mris_register ru_idrss 0
- mris_register ru_isrss 0
- mris_register ru_minflt 42293
- mris_register ru_majflt 0
- mris_register ru_nswap 0
- mris_register ru_inblock 11328
- mris_register ru_oublock 11424
- mris_register ru_msgsnd 0
- mris_register ru_msgrcv 0
- mris_register ru_nsignals 0
- mris_register ru_nvcsw 404991
- mris_register ru_nivcsw 286314
- FSRUNTIME@ mris_register 1.7111 hours 1 threads
- PIDs (27891 27894) completed and logs appended.
- #--------------------------------------------
- #@# Jacobian white lh Sun Oct 8 02:16:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- #--------------------------------------------
- #@# Jacobian white rh Sun Oct 8 02:16:48 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- Waiting for PID 559 of (559 562) to complete...
- Waiting for PID 562 of (559 562) to complete...
- mris_jacobian ../surf/lh.white.preaparc ../surf/lh.sphere.reg ../surf/lh.jacobian_white
- reading surface from ../surf/lh.white.preaparc...
- writing curvature file ../surf/lh.jacobian_white
- mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white
- reading surface from ../surf/rh.white.preaparc...
- writing curvature file ../surf/rh.jacobian_white
- PIDs (559 562) completed and logs appended.
- #--------------------------------------------
- #@# AvgCurv lh Sun Oct 8 02:16:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- #--------------------------------------------
- #@# AvgCurv rh Sun Oct 8 02:16:51 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- Waiting for PID 603 of (603 606) to complete...
- Waiting for PID 606 of (603 606) to complete...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/lh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/lh.avg_curv...
- mrisp_paint -a 5 /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv
- averaging curvature patterns 5 times...
- reading surface from ../surf/rh.sphere.reg...
- reading template parameterization from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif...
- writing curvature file to ../surf/rh.avg_curv...
- PIDs (603 606) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc lh Sun Oct 8 02:16:53 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- #-----------------------------------------
- #@# Cortical Parc rh Sun Oct 8 02:16:53 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- Waiting for PID 649 of (649 652) to complete...
- Waiting for PID 652 of (649 652) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.8 using min determinant for regularization = 0.006
- 0 singular and 342 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1639 labels changed using aseg
- relabeling using gibbs priors...
- 000: 3356 changed, 159161 examined...
- 001: 798 changed, 14285 examined...
- 002: 172 changed, 4394 examined...
- 003: 76 changed, 1034 examined...
- 004: 21 changed, 467 examined...
- 005: 7 changed, 128 examined...
- 006: 2 changed, 36 examined...
- 007: 0 changed, 15 examined...
- 210 labels changed using aseg
- 000: 131 total segments, 89 labels (431 vertices) changed
- 001: 42 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 6 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 2503 vertices marked for relabeling...
- 2503 labels changed in reclassification.
- writing output to ../label/lh.aparc.annot...
- classification took 0 minutes and 16 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.7 using min determinant for regularization = 0.004
- 0 singular and 309 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1162 labels changed using aseg
- relabeling using gibbs priors...
- 000: 3043 changed, 160959 examined...
- 001: 697 changed, 13134 examined...
- 002: 165 changed, 3929 examined...
- 003: 43 changed, 991 examined...
- 004: 15 changed, 281 examined...
- 005: 3 changed, 95 examined...
- 006: 0 changed, 21 examined...
- 131 labels changed using aseg
- 000: 107 total segments, 68 labels (344 vertices) changed
- 001: 41 total segments, 2 labels (3 vertices) changed
- 002: 39 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 7 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1508 vertices marked for relabeling...
- 1508 labels changed in reclassification.
- writing output to ../label/rh.aparc.annot...
- classification took 0 minutes and 17 seconds.
- PIDs (649 652) completed and logs appended.
- #--------------------------------------------
- #@# Make Pial Surf lh Sun Oct 8 02:17:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050116 lh
- #--------------------------------------------
- #@# Make Pial Surf rh Sun Oct 8 02:17:10 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050116 rh
- Waiting for PID 708 of (708 711) to complete...
- Waiting for PID 711 of (708 711) to complete...
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050116 lh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- 34570 bright wm thresholded.
- 3394 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.orig...
- computing class statistics...
- border white: 294543 voxels (1.76%)
- border gray 350131 voxels (2.09%)
- WM (97.0): 97.0 +- 9.1 [70.0 --> 110.0]
- GM (69.0) : 68.9 +- 10.0 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 57.0 (was 70)
- setting MAX_BORDER_WHITE to 111.1 (was 105)
- setting MIN_BORDER_WHITE to 67.0 (was 85)
- setting MAX_CSF to 47.0 (was 40)
- setting MAX_GRAY to 92.9 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 57.0 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 36.9 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-8.7, GM=67+-7.0
- mean inside = 92.5, mean outside = 73.4
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.89 +- 0.26 (0.02-->6.26) (max @ vno 77548 --> 157915)
- face area 0.33 +- 0.17 (0.00-->11.38)
- mean absolute distance = 0.53 +- 0.78
- 3651 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- deleting segment 2 with 5 points - only 0.00% unknown
- deleting segment 3 with 9 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 5 with 1 points - only 0.00% unknown
- deleting segment 6 with 252 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 7 with 2 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 8 with 3 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 9 with 3 points - only 0.00% unknown
- deleting segment 10 with 6 points - only 0.00% unknown
- deleting segment 11 with 7 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 12 with 4 points - only 0.00% unknown
- deleting segment 13 with 22 points - only 0.00% unknown
- deleting segment 14 with 42 points - only 0.00% unknown
- mean border=78.9, 131 (131) missing vertices, mean dist 0.3 [0.7 (%15.2)->0.5 (%84.8))]
- %72 local maxima, %24 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 0
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.26 (0.09-->6.15) (max @ vno 76369 --> 77548)
- face area 0.33 +- 0.17 (0.00-->10.57)
- mean absolute distance = 0.31 +- 0.51
- 3773 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=2319339.0, rms=7.103
- 001: dt: 0.5000, sse=1299189.9, rms=4.156 (41.493%)
- 002: dt: 0.5000, sse=1127115.8, rms=3.442 (17.175%)
- rms = 3.55, time step reduction 1 of 3 to 0.250...
- 003: dt: 0.2500, sse=973433.3, rms=2.615 (24.014%)
- 004: dt: 0.2500, sse=915738.3, rms=2.188 (16.334%)
- 005: dt: 0.2500, sse=888055.6, rms=2.008 (8.248%)
- 006: dt: 0.2500, sse=881634.8, rms=1.941 (3.303%)
- 007: dt: 0.2500, sse=881928.2, rms=1.889 (2.684%)
- rms = 1.86, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=872539.9, rms=1.859 (1.621%)
- 009: dt: 0.1250, sse=866751.2, rms=1.806 (2.857%)
- rms = 1.79, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=865795.6, rms=1.794 (0.628%)
- positioning took 1.3 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 3 vertex label from ripped group
- deleting segment 0 with 3 points - only 0.00% unknown
- deleting segment 1 with 6 points - only 0.00% unknown
- deleting segment 2 with 9 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 3 with 3 points - only 0.00% unknown
- deleting segment 4 with 185 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 5 with 3 points - only 0.00% unknown
- deleting segment 6 with 10 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 7 with 3 points - only 0.00% unknown
- deleting segment 8 with 5 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 9 with 2 points - only 0.00% unknown
- deleting segment 10 with 42 points - only 0.00% unknown
- mean border=82.1, 83 (33) missing vertices, mean dist -0.2 [0.3 (%74.5)->0.2 (%25.5))]
- %84 local maxima, %12 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.89 +- 0.26 (0.04-->6.13) (max @ vno 76369 --> 77548)
- face area 0.34 +- 0.18 (0.00-->11.16)
- mean absolute distance = 0.23 +- 0.36
- 3364 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1376697.8, rms=4.339
- 011: dt: 0.5000, sse=1070223.0, rms=2.944 (32.146%)
- rms = 3.27, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=942468.5, rms=2.158 (26.716%)
- 013: dt: 0.2500, sse=900173.4, rms=1.736 (19.553%)
- 014: dt: 0.2500, sse=877238.1, rms=1.586 (8.612%)
- rms = 1.54, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=872882.4, rms=1.543 (2.752%)
- 016: dt: 0.1250, sse=866653.6, rms=1.477 (4.282%)
- rms = 1.47, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=865785.6, rms=1.471 (0.403%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- deleting segment 0 with 4 points - only 0.00% unknown
- deleting segment 1 with 5 points - only 0.00% unknown
- deleting segment 2 with 8 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 3 with 1 points - only 0.00% unknown
- deleting segment 4 with 175 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 5 with 3 points - only 0.00% unknown
- deleting segment 6 with 10 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 7 with 4 points - only 0.00% unknown
- deleting segment 8 with 7 points - only 0.00% unknown
- deleting segment 9 with 8 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 10 with 2 points - only 0.00% unknown
- deleting segment 11 with 25 points - only 0.00% unknown
- deleting segment 12 with 45 points - only 0.00% unknown
- mean border=83.8, 99 (24) missing vertices, mean dist -0.1 [0.2 (%65.9)->0.2 (%34.1))]
- %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.89 +- 0.26 (0.08-->6.26) (max @ vno 76369 --> 77548)
- face area 0.33 +- 0.18 (0.00-->11.03)
- mean absolute distance = 0.22 +- 0.32
- 3390 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=999664.1, rms=2.677
- rms = 2.77, time step reduction 1 of 3 to 0.250...
- 018: dt: 0.2500, sse=896332.1, rms=1.939 (27.563%)
- 019: dt: 0.2500, sse=851412.1, rms=1.476 (23.869%)
- 020: dt: 0.2500, sse=843171.1, rms=1.411 (4.409%)
- rms = 1.41, time step reduction 2 of 3 to 0.125...
- 021: dt: 0.2500, sse=841808.0, rms=1.409 (0.178%)
- 022: dt: 0.1250, sse=836630.9, rms=1.346 (4.481%)
- rms = 1.35, time step reduction 3 of 3 to 0.062...
- 023: dt: 0.1250, sse=835393.2, rms=1.347 (-0.122%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- removing 4 vertex label from ripped group
- deleting segment 0 with 4 points - only 0.00% unknown
- deleting segment 1 with 5 points - only 0.00% unknown
- deleting segment 2 with 9 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 3 with 3 points - only 0.00% unknown
- deleting segment 4 with 186 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 5 with 3 points - only 0.00% unknown
- deleting segment 6 with 10 points - only 0.00% unknown
- deleting segment 7 with 7 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 8 with 3 points - only 0.00% unknown
- deleting segment 9 with 7 points - only 0.00% unknown
- deleting segment 10 with 21 points - only 0.00% unknown
- deleting segment 11 with 44 points - only 0.00% unknown
- mean border=84.4, 140 (18) missing vertices, mean dist -0.0 [0.2 (%53.8)->0.2 (%46.2))]
- %91 local maxima, % 6 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- writing smoothed curvature to lh.curv
- 000: dt: 0.0000, sse=852097.4, rms=1.577
- rms = 1.78, time step reduction 1 of 3 to 0.250...
- 024: dt: 0.2500, sse=819386.2, rms=1.180 (25.188%)
- 025: dt: 0.2500, sse=808714.9, rms=1.019 (13.659%)
- rms = 1.04, time step reduction 2 of 3 to 0.125...
- rms = 1.01, time step reduction 3 of 3 to 0.062...
- 026: dt: 0.1250, sse=806521.1, rms=1.014 (0.486%)
- positioning took 0.5 minutes
- generating cortex label...
- 14 non-cortical segments detected
- only using segment with 6479 vertices
- erasing segment 1 (vno[0] = 62561)
- erasing segment 2 (vno[0] = 68634)
- erasing segment 3 (vno[0] = 80203)
- erasing segment 4 (vno[0] = 85000)
- erasing segment 5 (vno[0] = 103315)
- erasing segment 6 (vno[0] = 110853)
- erasing segment 7 (vno[0] = 112138)
- erasing segment 8 (vno[0] = 114127)
- erasing segment 9 (vno[0] = 114455)
- erasing segment 10 (vno[0] = 114512)
- erasing segment 11 (vno[0] = 116819)
- erasing segment 12 (vno[0] = 117960)
- erasing segment 13 (vno[0] = 118043)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.curv
- writing smoothed area to lh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.area
- vertex spacing 0.89 +- 0.27 (0.04-->6.26) (max @ vno 76369 --> 77548)
- face area 0.33 +- 0.18 (0.00-->10.81)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 2 with 10 points - only 0.00% unknown
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=56.0, 154 (154) missing vertices, mean dist 1.4 [3.9 (%0.0)->3.0 (%100.0))]
- %12 local maxima, %33 large gradients and %52 min vals, 311 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=26760764.0, rms=29.088
- 001: dt: 0.0500, sse=23213508.0, rms=27.030 (7.074%)
- 002: dt: 0.0500, sse=20709608.0, rms=25.478 (5.744%)
- 003: dt: 0.0500, sse=18825762.0, rms=24.244 (4.842%)
- 004: dt: 0.0500, sse=17334644.0, rms=23.221 (4.220%)
- 005: dt: 0.0500, sse=16103978.0, rms=22.341 (3.788%)
- 006: dt: 0.0500, sse=15059937.0, rms=21.567 (3.467%)
- 007: dt: 0.0500, sse=14154425.0, rms=20.872 (3.223%)
- 008: dt: 0.0500, sse=13355559.0, rms=20.239 (3.033%)
- 009: dt: 0.0500, sse=12643081.0, rms=19.657 (2.875%)
- 010: dt: 0.0500, sse=12001610.0, rms=19.118 (2.743%)
- positioning took 1.1 minutes
- mean border=55.8, 121 (72) missing vertices, mean dist 1.2 [0.4 (%0.0)->2.5 (%100.0))]
- %14 local maxima, %33 large gradients and %50 min vals, 261 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=12932814.0, rms=19.899
- 011: dt: 0.0500, sse=12344373.0, rms=19.412 (2.450%)
- 012: dt: 0.0500, sse=11807681.0, rms=18.956 (2.348%)
- 013: dt: 0.0500, sse=11317048.0, rms=18.529 (2.250%)
- 014: dt: 0.0500, sse=10867171.0, rms=18.129 (2.159%)
- 015: dt: 0.0500, sse=10454336.0, rms=17.754 (2.069%)
- 016: dt: 0.0500, sse=10074678.0, rms=17.402 (1.983%)
- 017: dt: 0.0500, sse=9725210.0, rms=17.072 (1.900%)
- 018: dt: 0.0500, sse=9402585.0, rms=16.760 (1.822%)
- 019: dt: 0.0500, sse=9104287.0, rms=16.467 (1.748%)
- 020: dt: 0.0500, sse=8827524.0, rms=16.191 (1.680%)
- positioning took 1.1 minutes
- mean border=55.7, 158 (56) missing vertices, mean dist 1.1 [0.1 (%0.7)->2.2 (%99.3))]
- %14 local maxima, %33 large gradients and %50 min vals, 266 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=8950391.0, rms=16.322
- 021: dt: 0.0500, sse=8688902.0, rms=16.058 (1.616%)
- 022: dt: 0.0500, sse=8445831.0, rms=15.809 (1.551%)
- 023: dt: 0.0500, sse=8218909.0, rms=15.573 (1.494%)
- 024: dt: 0.0500, sse=8007060.0, rms=15.349 (1.438%)
- 025: dt: 0.0500, sse=7808790.0, rms=15.136 (1.386%)
- 026: dt: 0.0500, sse=7622476.0, rms=14.933 (1.339%)
- 027: dt: 0.0500, sse=7446029.0, rms=14.739 (1.303%)
- 028: dt: 0.0500, sse=7277845.0, rms=14.551 (1.276%)
- 029: dt: 0.0500, sse=7117191.0, rms=14.369 (1.251%)
- 030: dt: 0.0500, sse=6963388.0, rms=14.192 (1.228%)
- positioning took 1.1 minutes
- mean border=55.6, 185 (42) missing vertices, mean dist 0.9 [0.1 (%5.2)->2.0 (%94.8))]
- %14 local maxima, %33 large gradients and %49 min vals, 213 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=7030103.5, rms=14.270
- 031: dt: 0.5000, sse=5901319.0, rms=12.910 (9.529%)
- 032: dt: 0.5000, sse=5058645.5, rms=11.785 (8.710%)
- 033: dt: 0.5000, sse=4363758.5, rms=10.770 (8.614%)
- 034: dt: 0.5000, sse=3786758.0, rms=9.844 (8.604%)
- 035: dt: 0.5000, sse=3315260.8, rms=9.017 (8.398%)
- 036: dt: 0.5000, sse=2926132.5, rms=8.272 (8.262%)
- 037: dt: 0.5000, sse=2601945.0, rms=7.597 (8.159%)
- 038: dt: 0.5000, sse=2344552.5, rms=7.014 (7.671%)
- 039: dt: 0.5000, sse=2152923.0, rms=6.548 (6.645%)
- 040: dt: 0.5000, sse=2010943.8, rms=6.178 (5.655%)
- 041: dt: 0.5000, sse=1912436.1, rms=5.909 (4.352%)
- 042: dt: 0.5000, sse=1841677.5, rms=5.706 (3.435%)
- 043: dt: 0.5000, sse=1796803.0, rms=5.573 (2.339%)
- 044: dt: 0.5000, sse=1760592.0, rms=5.463 (1.962%)
- 045: dt: 0.5000, sse=1738430.0, rms=5.394 (1.265%)
- 046: dt: 0.5000, sse=1718591.2, rms=5.332 (1.153%)
- rms = 5.29, time step reduction 1 of 3 to 0.250...
- 047: dt: 0.5000, sse=1704750.4, rms=5.288 (0.817%)
- 048: dt: 0.2500, sse=1606493.4, rms=4.929 (6.791%)
- 049: dt: 0.2500, sse=1575756.8, rms=4.827 (2.073%)
- rms = 4.84, time step reduction 2 of 3 to 0.125...
- rms = 4.79, time step reduction 3 of 3 to 0.062...
- 050: dt: 0.1250, sse=1565462.5, rms=4.789 (0.797%)
- positioning took 3.5 minutes
- mean border=54.8, 4936 (17) missing vertices, mean dist 0.1 [0.2 (%44.1)->0.6 (%55.9))]
- %22 local maxima, %26 large gradients and %46 min vals, 148 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1844024.8, rms=4.962
- 051: dt: 0.5000, sse=1761324.6, rms=4.692 (5.436%)
- 052: dt: 0.5000, sse=1706505.9, rms=4.521 (3.645%)
- rms = 4.64, time step reduction 1 of 3 to 0.250...
- 053: dt: 0.2500, sse=1602468.4, rms=4.081 (9.731%)
- 054: dt: 0.2500, sse=1578063.9, rms=3.964 (2.877%)
- rms = 3.97, time step reduction 2 of 3 to 0.125...
- 055: dt: 0.1250, sse=1566549.8, rms=3.911 (1.340%)
- 056: dt: 0.1250, sse=1551485.6, rms=3.840 (1.796%)
- rms = 3.82, time step reduction 3 of 3 to 0.062...
- 057: dt: 0.1250, sse=1547291.1, rms=3.821 (0.496%)
- positioning took 1.8 minutes
- mean border=54.3, 5100 (13) missing vertices, mean dist 0.1 [0.2 (%43.9)->0.4 (%56.1))]
- %31 local maxima, %17 large gradients and %45 min vals, 175 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1591934.8, rms=4.012
- rms = 4.32, time step reduction 1 of 3 to 0.250...
- 058: dt: 0.2500, sse=1562763.1, rms=3.884 (3.187%)
- rms = 3.86, time step reduction 2 of 3 to 0.125...
- 059: dt: 0.2500, sse=1556141.4, rms=3.860 (0.616%)
- 060: dt: 0.1250, sse=1543394.5, rms=3.800 (1.554%)
- rms = 3.77, time step reduction 3 of 3 to 0.062...
- 061: dt: 0.1250, sse=1536050.1, rms=3.773 (0.734%)
- positioning took 1.1 minutes
- mean border=53.8, 9162 (12) missing vertices, mean dist 0.0 [0.2 (%45.7)->0.3 (%54.3))]
- %34 local maxima, %14 large gradients and %43 min vals, 176 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- writing smoothed curvature to lh.curv.pial
- 000: dt: 0.0000, sse=1556978.5, rms=3.852
- rms = 3.98, time step reduction 1 of 3 to 0.250...
- 062: dt: 0.2500, sse=1534024.8, rms=3.753 (2.570%)
- 063: dt: 0.2500, sse=1508410.4, rms=3.661 (2.455%)
- rms = 3.62, time step reduction 2 of 3 to 0.125...
- 064: dt: 0.2500, sse=1496034.5, rms=3.615 (1.240%)
- 065: dt: 0.1250, sse=1470529.8, rms=3.493 (3.370%)
- rms = 3.45, time step reduction 3 of 3 to 0.062...
- 066: dt: 0.1250, sse=1460375.2, rms=3.451 (1.220%)
- positioning took 1.4 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.curv.pial
- writing smoothed area to lh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.area.pial
- vertex spacing 1.02 +- 0.47 (0.04-->7.07) (max @ vno 108629 --> 107370)
- face area 0.40 +- 0.34 (0.00-->11.83)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 159161 vertices processed
- 25000 of 159161 vertices processed
- 50000 of 159161 vertices processed
- 75000 of 159161 vertices processed
- 100000 of 159161 vertices processed
- 125000 of 159161 vertices processed
- 150000 of 159161 vertices processed
- 0 of 159161 vertices processed
- 25000 of 159161 vertices processed
- 50000 of 159161 vertices processed
- 75000 of 159161 vertices processed
- 100000 of 159161 vertices processed
- 125000 of 159161 vertices processed
- 150000 of 159161 vertices processed
- thickness calculation complete, 467:1034 truncations.
- 29625 vertices at 0 distance
- 102171 vertices at 1 distance
- 102185 vertices at 2 distance
- 48308 vertices at 3 distance
- 16751 vertices at 4 distance
- 5315 vertices at 5 distance
- 1809 vertices at 6 distance
- 643 vertices at 7 distance
- 268 vertices at 8 distance
- 137 vertices at 9 distance
- 64 vertices at 10 distance
- 55 vertices at 11 distance
- 45 vertices at 12 distance
- 37 vertices at 13 distance
- 33 vertices at 14 distance
- 24 vertices at 15 distance
- 13 vertices at 16 distance
- 7 vertices at 17 distance
- 17 vertices at 18 distance
- 15 vertices at 19 distance
- 20 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.thickness
- positioning took 19.3 minutes
- mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs 0050116 rh
- using white.preaparc starting white location...
- using white.preaparc starting pial locations...
- using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline
- INFO: assuming MGZ format for volumes.
- using brain.finalsurfs as T1 volume...
- $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/filled.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/brain.finalsurfs.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/../mri/aseg.presurf.mgz...
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- 34570 bright wm thresholded.
- 3394 bright non-wm voxels segmented.
- reading original surface position from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.orig...
- computing class statistics...
- border white: 294543 voxels (1.76%)
- border gray 350131 voxels (2.09%)
- WM (97.0): 97.0 +- 9.1 [70.0 --> 110.0]
- GM (69.0) : 68.9 +- 10.0 [30.0 --> 110.0]
- setting MIN_GRAY_AT_WHITE_BORDER to 57.0 (was 70)
- setting MAX_BORDER_WHITE to 111.1 (was 105)
- setting MIN_BORDER_WHITE to 67.0 (was 85)
- setting MAX_CSF to 47.0 (was 40)
- setting MAX_GRAY to 92.9 (was 95)
- setting MAX_GRAY_AT_CSF_BORDER to 57.0 (was 75)
- setting MIN_GRAY_AT_CSF_BORDER to 36.9 (was 40)
- using class modes intead of means, discounting robust sigmas....
- intensity peaks found at WM=102+-8.7, GM=67+-7.0
- mean inside = 92.0, mean outside = 72.6
- smoothing surface for 5 iterations...
- reading initial white vertex positions from white.preaparc...
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- repositioning cortical surface to gray/white boundary
- smoothing T1 volume with sigma = 2.000
- vertex spacing 0.89 +- 0.26 (0.03-->8.41) (max @ vno 70146 --> 80036)
- face area 0.33 +- 0.16 (0.00-->9.90)
- mean absolute distance = 0.51 +- 0.76
- 3505 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 10 points - only 0.00% unknown
- deleting segment 1 with 34 points - only 0.00% unknown
- deleting segment 2 with 27 points - only 0.00% unknown
- deleting segment 3 with 12 points - only 0.00% unknown
- deleting segment 4 with 90 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 6 with 3 points - only 0.00% unknown
- deleting segment 7 with 76 points - only 0.00% unknown
- deleting segment 9 with 211 points - only 0.00% unknown
- deleting segment 10 with 11 points - only 0.00% unknown
- deleting segment 11 with 22 points - only 0.00% unknown
- deleting segment 12 with 32 points - only 0.00% unknown
- deleting segment 13 with 52 points - only 42.31% unknown
- deleting segment 14 with 12 points - only 0.00% unknown
- mean border=78.6, 139 (138) missing vertices, mean dist 0.3 [0.7 (%15.1)->0.5 (%84.9))]
- %69 local maxima, %28 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- complete_dist_mat 0
- rms 0
- smooth_averages 0
- remove_neg 0
- ico_order 0
- which_surface 0
- target_radius 0.000000
- nfields 0
- scale 0.000000
- desired_rms_height 0.000000
- momentum 0.000000
- nbhd_size 0
- max_nbrs 0
- niterations 25
- nsurfaces 0
- SURFACES 3
- flags 0 (0)
- use curv 0
- no sulc 0
- no rigid align 0
- mris->nsize 2
- mris->hemisphere 1
- randomSeed 0
- smoothing T1 volume with sigma = 1.000
- vertex spacing 0.90 +- 0.26 (0.10-->8.86) (max @ vno 70146 --> 80036)
- face area 0.33 +- 0.16 (0.00-->9.29)
- mean absolute distance = 0.30 +- 0.51
- 3620 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=2327356.0, rms=7.073
- 001: dt: 0.5000, sse=1315549.6, rms=4.178 (40.934%)
- 002: dt: 0.5000, sse=1148595.8, rms=3.513 (15.909%)
- rms = 3.63, time step reduction 1 of 3 to 0.250...
- 003: dt: 0.2500, sse=979648.7, rms=2.613 (25.611%)
- 004: dt: 0.2500, sse=916047.8, rms=2.157 (17.447%)
- 005: dt: 0.2500, sse=888485.6, rms=1.962 (9.070%)
- 006: dt: 0.2500, sse=882884.1, rms=1.889 (3.685%)
- 007: dt: 0.2500, sse=874983.2, rms=1.834 (2.919%)
- rms = 1.81, time step reduction 2 of 3 to 0.125...
- 008: dt: 0.2500, sse=874040.9, rms=1.806 (1.547%)
- 009: dt: 0.1250, sse=866988.3, rms=1.744 (3.446%)
- rms = 1.73, time step reduction 3 of 3 to 0.062...
- 010: dt: 0.1250, sse=864863.9, rms=1.733 (0.639%)
- positioning took 1.3 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 8 points - only 0.00% unknown
- deleting segment 1 with 32 points - only 0.00% unknown
- deleting segment 2 with 20 points - only 0.00% unknown
- deleting segment 3 with 8 points - only 0.00% unknown
- deleting segment 4 with 83 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 5 with 3 points - only 0.00% unknown
- deleting segment 6 with 62 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- removing 1 vertex label from ripped group
- deleting segment 8 with 1 points - only 0.00% unknown
- deleting segment 9 with 39 points - only 0.00% unknown
- deleting segment 10 with 50 points - only 0.00% unknown
- removing 1 vertex label from ripped group
- deleting segment 11 with 1 points - only 0.00% unknown
- deleting segment 12 with 12 points - only 0.00% unknown
- deleting segment 13 with 28 points - only 0.00% unknown
- deleting segment 14 with 6 points - only 0.00% unknown
- mean border=81.8, 98 (31) missing vertices, mean dist -0.2 [0.3 (%74.0)->0.2 (%26.0))]
- %82 local maxima, %15 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- vertex spacing 0.89 +- 0.26 (0.06-->9.24) (max @ vno 70146 --> 80036)
- face area 0.34 +- 0.17 (0.00-->9.23)
- mean absolute distance = 0.23 +- 0.36
- 4037 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1363894.2, rms=4.257
- 011: dt: 0.5000, sse=1084304.0, rms=3.006 (29.381%)
- rms = 3.36, time step reduction 1 of 3 to 0.250...
- 012: dt: 0.2500, sse=945845.3, rms=2.149 (28.523%)
- 013: dt: 0.2500, sse=892526.9, rms=1.701 (20.855%)
- 014: dt: 0.2500, sse=875629.2, rms=1.532 (9.930%)
- rms = 1.50, time step reduction 2 of 3 to 0.125...
- 015: dt: 0.2500, sse=872673.4, rms=1.495 (2.370%)
- 016: dt: 0.1250, sse=865702.5, rms=1.420 (5.021%)
- rms = 1.42, time step reduction 3 of 3 to 0.062...
- 017: dt: 0.1250, sse=865448.2, rms=1.418 (0.180%)
- positioning took 0.9 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 11 points - only 0.00% unknown
- deleting segment 1 with 32 points - only 0.00% unknown
- deleting segment 2 with 22 points - only 0.00% unknown
- deleting segment 3 with 11 points - only 0.00% unknown
- deleting segment 4 with 86 points - only 0.00% unknown
- deleting segment 5 with 5 points - only 0.00% unknown
- deleting segment 6 with 70 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- removing 3 vertex label from ripped group
- deleting segment 8 with 3 points - only 0.00% unknown
- deleting segment 9 with 39 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 10 with 2 points - only 0.00% unknown
- removing 2 vertex label from ripped group
- deleting segment 11 with 2 points - only 0.00% unknown
- deleting segment 12 with 55 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 13 with 4 points - only 0.00% unknown
- deleting segment 14 with 23 points - only 0.00% unknown
- deleting segment 15 with 29 points - only 0.00% unknown
- removing 4 vertex label from ripped group
- deleting segment 16 with 4 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 17 with 3 points - only 0.00% unknown
- deleting segment 18 with 13 points - only 0.00% unknown
- mean border=83.6, 111 (19) missing vertices, mean dist -0.1 [0.2 (%65.8)->0.2 (%34.2))]
- %87 local maxima, % 9 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- vertex spacing 0.89 +- 0.26 (0.06-->9.27) (max @ vno 70146 --> 80036)
- face area 0.33 +- 0.17 (0.00-->9.16)
- mean absolute distance = 0.22 +- 0.32
- 4092 vertices more than 2 sigmas from mean.
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1008270.1, rms=2.688
- rms = 2.84, time step reduction 1 of 3 to 0.250...
- 018: dt: 0.2500, sse=900938.6, rms=1.931 (28.160%)
- 019: dt: 0.2500, sse=855040.8, rms=1.457 (24.557%)
- 020: dt: 0.2500, sse=849885.4, rms=1.382 (5.133%)
- rms = 1.38, time step reduction 2 of 3 to 0.125...
- 021: dt: 0.2500, sse=844174.3, rms=1.377 (0.327%)
- 022: dt: 0.1250, sse=838101.8, rms=1.308 (5.057%)
- rms = 1.31, time step reduction 3 of 3 to 0.062...
- 023: dt: 0.1250, sse=838700.8, rms=1.310 (-0.180%)
- positioning took 0.8 minutes
- inhibiting deformation at non-cortical midline structures...
- deleting segment 0 with 11 points - only 0.00% unknown
- deleting segment 1 with 32 points - only 0.00% unknown
- deleting segment 2 with 22 points - only 0.00% unknown
- deleting segment 3 with 11 points - only 0.00% unknown
- deleting segment 4 with 87 points - only 0.00% unknown
- deleting segment 5 with 5 points - only 0.00% unknown
- deleting segment 6 with 70 points - only 0.00% unknown
- deleting segment 7 with 9 points - only 0.00% unknown
- deleting segment 8 with 47 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 9 with 3 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 10 with 3 points - only 0.00% unknown
- deleting segment 11 with 55 points - only 0.00% unknown
- deleting segment 12 with 23 points - only 0.00% unknown
- deleting segment 13 with 22 points - only 0.00% unknown
- deleting segment 14 with 8 points - only 0.00% unknown
- removing 3 vertex label from ripped group
- deleting segment 15 with 3 points - only 0.00% unknown
- deleting segment 16 with 13 points - only 0.00% unknown
- mean border=84.2, 130 (11) missing vertices, mean dist -0.0 [0.2 (%53.8)->0.2 (%46.2))]
- %89 local maxima, % 7 large gradients and % 0 min vals, 0 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing white matter surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- writing smoothed curvature to rh.curv
- 000: dt: 0.0000, sse=855729.9, rms=1.564
- rms = 1.82, time step reduction 1 of 3 to 0.250...
- 024: dt: 0.2500, sse=819639.9, rms=1.140 (27.075%)
- 025: dt: 0.2500, sse=809869.7, rms=0.973 (14.671%)
- rms = 0.99, time step reduction 2 of 3 to 0.125...
- rms = 0.97, time step reduction 3 of 3 to 0.062...
- 026: dt: 0.1250, sse=811192.5, rms=0.968 (0.472%)
- positioning took 0.5 minutes
- generating cortex label...
- 19 non-cortical segments detected
- only using segment with 7106 vertices
- erasing segment 1 (vno[0] = 81011)
- erasing segment 2 (vno[0] = 82909)
- erasing segment 3 (vno[0] = 105231)
- erasing segment 4 (vno[0] = 115188)
- erasing segment 5 (vno[0] = 115611)
- erasing segment 6 (vno[0] = 117441)
- erasing segment 7 (vno[0] = 119005)
- erasing segment 8 (vno[0] = 120104)
- erasing segment 9 (vno[0] = 120226)
- erasing segment 10 (vno[0] = 123303)
- erasing segment 11 (vno[0] = 125082)
- erasing segment 12 (vno[0] = 127304)
- erasing segment 13 (vno[0] = 129251)
- erasing segment 14 (vno[0] = 133153)
- erasing segment 15 (vno[0] = 135986)
- erasing segment 16 (vno[0] = 138731)
- erasing segment 17 (vno[0] = 141220)
- erasing segment 18 (vno[0] = 160583)
- writing cortex label to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label...
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.curv
- writing smoothed area to rh.area
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.area
- vertex spacing 0.89 +- 0.26 (0.03-->9.46) (max @ vno 70146 --> 80036)
- face area 0.33 +- 0.17 (0.00-->8.96)
- repositioning cortical surface to gray/csf boundary.
- smoothing T1 volume with sigma = 2.000
- averaging target values for 5 iterations...
- inhibiting deformation at non-cortical midline structures...
- smoothing surface for 5 iterations...
- reading initial pial vertex positions from white.preaparc...
- mean border=55.5, 157 (157) missing vertices, mean dist 1.5 [0.0 (%0.0)->2.9 (%100.0))]
- %12 local maxima, %36 large gradients and %48 min vals, 463 gradients ignored
- perforing initial smooth deformation to move away from white surface
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=27318936.0, rms=29.273
- 001: dt: 0.0500, sse=23638230.0, rms=27.168 (7.191%)
- 002: dt: 0.0500, sse=21036418.0, rms=25.575 (5.861%)
- 003: dt: 0.0500, sse=19075362.0, rms=24.306 (4.963%)
- 004: dt: 0.0500, sse=17517872.0, rms=23.249 (4.351%)
- 005: dt: 0.0500, sse=16233439.0, rms=22.339 (3.913%)
- 006: dt: 0.0500, sse=15143298.0, rms=21.536 (3.592%)
- 007: dt: 0.0500, sse=14197271.0, rms=20.815 (3.350%)
- 008: dt: 0.0500, sse=13364129.0, rms=20.158 (3.155%)
- 009: dt: 0.0500, sse=12620880.0, rms=19.553 (2.999%)
- 010: dt: 0.0500, sse=11951801.0, rms=18.993 (2.868%)
- positioning took 1.1 minutes
- mean border=55.3, 106 (65) missing vertices, mean dist 1.2 [0.1 (%0.0)->2.4 (%100.0))]
- %13 local maxima, %36 large gradients and %46 min vals, 441 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=12809274.0, rms=19.712
- 011: dt: 0.0500, sse=12195411.0, rms=19.202 (2.584%)
- 012: dt: 0.0500, sse=11635628.0, rms=18.726 (2.482%)
- 013: dt: 0.0500, sse=11123591.0, rms=18.279 (2.387%)
- 014: dt: 0.0500, sse=10653809.0, rms=17.859 (2.298%)
- 015: dt: 0.0500, sse=10221602.0, rms=17.463 (2.214%)
- 016: dt: 0.0500, sse=9824000.0, rms=17.091 (2.130%)
- 017: dt: 0.0500, sse=9457615.0, rms=16.741 (2.048%)
- 018: dt: 0.0500, sse=9118989.0, rms=16.411 (1.973%)
- 019: dt: 0.0500, sse=8805645.0, rms=16.099 (1.900%)
- 020: dt: 0.0500, sse=8515083.0, rms=15.805 (1.830%)
- positioning took 1.1 minutes
- mean border=55.2, 126 (48) missing vertices, mean dist 1.1 [0.1 (%1.0)->2.1 (%99.0))]
- %14 local maxima, %36 large gradients and %46 min vals, 444 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.05
- 000: dt: 0.0000, sse=8621770.0, rms=15.921
- 021: dt: 0.0500, sse=8345594.0, rms=15.638 (1.779%)
- 022: dt: 0.0500, sse=8089234.0, rms=15.371 (1.711%)
- 023: dt: 0.0500, sse=7849249.0, rms=15.116 (1.658%)
- 024: dt: 0.0500, sse=7625224.5, rms=14.874 (1.601%)
- 025: dt: 0.0500, sse=7415652.0, rms=14.644 (1.547%)
- 026: dt: 0.0500, sse=7218874.0, rms=14.424 (1.499%)
- 027: dt: 0.0500, sse=7033324.5, rms=14.214 (1.457%)
- 028: dt: 0.0500, sse=6856867.5, rms=14.011 (1.427%)
- 029: dt: 0.0500, sse=6688710.0, rms=13.815 (1.400%)
- 030: dt: 0.0500, sse=6528208.5, rms=13.625 (1.375%)
- positioning took 1.1 minutes
- mean border=55.1, 171 (42) missing vertices, mean dist 0.9 [0.1 (%6.1)->1.9 (%93.9))]
- %14 local maxima, %36 large gradients and %46 min vals, 370 gradients ignored
- tol=1.0e-04, sigma=2.0, host=tars-, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 1.000
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=6595225.5, rms=13.705
- 031: dt: 0.5000, sse=5425842.0, rms=12.243 (10.668%)
- 032: dt: 0.5000, sse=4602757.0, rms=11.091 (9.413%)
- 033: dt: 0.5000, sse=3962368.0, rms=10.103 (8.906%)
- 034: dt: 0.5000, sse=3456308.0, rms=9.242 (8.522%)
- 035: dt: 0.5000, sse=3045111.8, rms=8.480 (8.249%)
- 036: dt: 0.5000, sse=2697868.8, rms=7.776 (8.303%)
- 037: dt: 0.5000, sse=2396435.2, rms=7.112 (8.530%)
- 038: dt: 0.5000, sse=2153121.8, rms=6.526 (8.248%)
- 039: dt: 0.5000, sse=1969387.8, rms=6.048 (7.323%)
- 040: dt: 0.5000, sse=1844199.4, rms=5.697 (5.805%)
- 041: dt: 0.5000, sse=1755169.9, rms=5.436 (4.580%)
- 042: dt: 0.5000, sse=1699960.0, rms=5.265 (3.147%)
- 043: dt: 0.5000, sse=1663354.0, rms=5.150 (2.181%)
- 044: dt: 0.5000, sse=1640424.4, rms=5.073 (1.490%)
- rms = 5.03, time step reduction 1 of 3 to 0.250...
- 045: dt: 0.5000, sse=1626792.8, rms=5.030 (0.859%)
- 046: dt: 0.2500, sse=1532920.1, rms=4.669 (7.174%)
- 047: dt: 0.2500, sse=1499878.5, rms=4.552 (2.507%)
- rms = 4.56, time step reduction 2 of 3 to 0.125...
- rms = 4.52, time step reduction 3 of 3 to 0.062...
- 048: dt: 0.1250, sse=1490801.6, rms=4.516 (0.785%)
- positioning took 3.0 minutes
- mean border=54.3, 4317 (12) missing vertices, mean dist 0.1 [0.2 (%45.3)->0.6 (%54.7))]
- %23 local maxima, %28 large gradients and %42 min vals, 179 gradients ignored
- tol=1.0e-04, sigma=1.0, host=tars-, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.500
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1799725.5, rms=4.810
- 049: dt: 0.5000, sse=1716493.5, rms=4.532 (5.762%)
- 050: dt: 0.5000, sse=1659343.0, rms=4.347 (4.092%)
- rms = 4.42, time step reduction 1 of 3 to 0.250...
- 051: dt: 0.2500, sse=1554764.1, rms=3.890 (10.520%)
- 052: dt: 0.2500, sse=1525326.6, rms=3.744 (3.732%)
- rms = 3.72, time step reduction 2 of 3 to 0.125...
- 053: dt: 0.2500, sse=1519211.1, rms=3.717 (0.732%)
- 054: dt: 0.1250, sse=1490656.8, rms=3.580 (3.698%)
- rms = 3.55, time step reduction 3 of 3 to 0.062...
- 055: dt: 0.1250, sse=1483865.4, rms=3.549 (0.845%)
- positioning took 1.6 minutes
- mean border=53.7, 4401 (10) missing vertices, mean dist 0.1 [0.2 (%43.5)->0.4 (%56.5))]
- %34 local maxima, %18 large gradients and %42 min vals, 223 gradients ignored
- tol=1.0e-04, sigma=0.5, host=tars-, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- smoothing T1 volume with sigma = 0.250
- averaging target values for 5 iterations...
- 000: dt: 0.0000, sse=1533948.8, rms=3.757
- rms = 4.06, time step reduction 1 of 3 to 0.250...
- 056: dt: 0.2500, sse=1502455.9, rms=3.610 (3.909%)
- rms = 3.57, time step reduction 2 of 3 to 0.125...
- 057: dt: 0.2500, sse=1493006.0, rms=3.570 (1.102%)
- 058: dt: 0.1250, sse=1479840.8, rms=3.504 (1.844%)
- rms = 3.48, time step reduction 3 of 3 to 0.062...
- 059: dt: 0.1250, sse=1474304.4, rms=3.482 (0.644%)
- positioning took 1.1 minutes
- mean border=53.2, 8144 (9) missing vertices, mean dist 0.0 [0.2 (%45.2)->0.3 (%54.8))]
- %36 local maxima, %15 large gradients and %40 min vals, 234 gradients ignored
- tol=1.0e-04, sigma=0.2, host=tars-, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000
- mom=0.00, dt=0.50
- writing pial surface to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- writing smoothed curvature to rh.curv.pial
- 000: dt: 0.0000, sse=1495800.6, rms=3.573
- rms = 3.78, time step reduction 1 of 3 to 0.250...
- 060: dt: 0.2500, sse=1474751.2, rms=3.475 (2.731%)
- 061: dt: 0.2500, sse=1457058.1, rms=3.411 (1.848%)
- rms = 3.39, time step reduction 2 of 3 to 0.125...
- 062: dt: 0.2500, sse=1450617.6, rms=3.390 (0.627%)
- 063: dt: 0.1250, sse=1428194.4, rms=3.278 (3.314%)
- rms = 3.24, time step reduction 3 of 3 to 0.062...
- 064: dt: 0.1250, sse=1420577.9, rms=3.244 (1.010%)
- positioning took 1.3 minutes
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.curv.pial
- writing smoothed area to rh.area.pial
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.area.pial
- vertex spacing 1.01 +- 0.46 (0.05-->8.20) (max @ vno 160148 --> 160128)
- face area 0.41 +- 0.33 (0.00-->9.95)
- measuring cortical thickness...
- writing cortical thickness estimate to 'thickness' file.
- 0 of 160959 vertices processed
- 25000 of 160959 vertices processed
- 50000 of 160959 vertices processed
- 75000 of 160959 vertices processed
- 100000 of 160959 vertices processed
- 125000 of 160959 vertices processed
- 150000 of 160959 vertices processed
- 0 of 160959 vertices processed
- 25000 of 160959 vertices processed
- 50000 of 160959 vertices processed
- 75000 of 160959 vertices processed
- 100000 of 160959 vertices processed
- 125000 of 160959 vertices processed
- 150000 of 160959 vertices processed
- thickness calculation complete, 233:664 truncations.
- 33270 vertices at 0 distance
- 108062 vertices at 1 distance
- 101830 vertices at 2 distance
- 45594 vertices at 3 distance
- 14608 vertices at 4 distance
- 4308 vertices at 5 distance
- 1405 vertices at 6 distance
- 475 vertices at 7 distance
- 189 vertices at 8 distance
- 118 vertices at 9 distance
- 69 vertices at 10 distance
- 36 vertices at 11 distance
- 33 vertices at 12 distance
- 24 vertices at 13 distance
- 17 vertices at 14 distance
- 26 vertices at 15 distance
- 18 vertices at 16 distance
- 14 vertices at 17 distance
- 16 vertices at 18 distance
- 10 vertices at 19 distance
- 16 vertices at 20 distance
- writing curvature file /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.thickness
- positioning took 18.6 minutes
- PIDs (708 711) completed and logs appended.
- #--------------------------------------------
- #@# Surf Volume lh Sun Oct 8 02:36:28 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- mris_calc -o lh.area.mid lh.area add lh.area.pial
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o lh.area.mid lh.area.mid div 2
- Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0050116 lh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- #@# 0050116 lh 306142
-
- vertexvol Done
- #--------------------------------------------
- #@# Surf Volume rh Sun Oct 8 02:36:32 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf
- mris_calc -o rh.area.mid rh.area add rh.area.pial
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_calc -o rh.area.mid rh.area.mid div 2
- Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ]
- mris_convert --volume 0050116 rh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.volume
- masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- #@# 0050116 rh 303707
-
- vertexvol Done
- #--------------------------------------------
- #@# Cortical ribbon mask Sun Oct 8 02:36:36 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mris_volmask --aseg_name aseg.presurf --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon 0050116
- SUBJECTS_DIR is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- loading input data...
- computing distance to left white surface
- computing distance to left pial surface
- computing distance to right white surface
- computing distance to right pial surface
- hemi masks overlap voxels = 87
- writing volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/ribbon.mgz
- mris_volmask took 25.63 minutes
- writing ribbon files
- #-----------------------------------------
- #@# Parcellation Stats lh Sun Oct 8 03:02:14 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050116 lh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050116 lh pial
- #-----------------------------------------
- #@# Parcellation Stats rh Sun Oct 8 03:02:14 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050116 rh white
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050116 rh pial
- Waiting for PID 3901 of (3901 3904 3907 3910) to complete...
- Waiting for PID 3904 of (3901 3904 3907 3910) to complete...
- Waiting for PID 3907 of (3901 3904 3907 3910) to complete...
- Waiting for PID 3910 of (3901 3904 3907 3910) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050116 lh white
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1749 1228 3381 2.878 0.462 0.105 0.020 11 1.5 bankssts
- 1102 720 2255 2.892 0.763 0.134 0.029 23 1.2 caudalanteriorcingulate
- 4640 3125 10216 2.891 0.516 0.118 0.029 47 5.5 caudalmiddlefrontal
- 3208 2101 4084 1.836 0.447 0.135 0.037 44 4.6 cuneus
- 642 476 2073 3.400 0.758 0.149 0.050 8 1.4 entorhinal
- 5917 3941 12376 2.745 0.596 0.130 0.034 92 7.5 fusiform
- 7636 5073 15281 2.708 0.518 0.123 0.032 103 9.7 inferiorparietal
- 5905 3898 12517 2.771 0.691 0.132 0.044 96 10.7 inferiortemporal
- 2047 1288 4083 2.729 0.891 0.125 0.035 32 2.7 isthmuscingulate
- 9362 5865 13462 2.139 0.594 0.143 0.045 162 16.0 lateraloccipital
- 4595 2996 9531 2.827 0.603 0.128 0.038 70 6.9 lateralorbitofrontal
- 4827 3245 7333 2.190 0.710 0.140 0.042 75 7.5 lingual
- 3712 2483 8046 2.808 0.727 0.132 0.041 74 5.8 medialorbitofrontal
- 5648 3772 14991 3.126 0.741 0.134 0.039 91 8.6 middletemporal
- 1488 922 3049 2.990 0.804 0.103 0.034 18 2.0 parahippocampal
- 2517 1442 4479 2.856 0.494 0.101 0.049 34 6.3 paracentral
- 2279 1556 4888 2.768 0.547 0.115 0.033 32 3.0 parsopercularis
- 1168 789 2864 2.770 0.592 0.137 0.034 20 1.6 parsorbitalis
- 1926 1297 3896 2.624 0.509 0.108 0.025 22 1.8 parstriangularis
- 2813 1866 2622 1.702 0.460 0.145 0.039 36 4.4 pericalcarine
- 8114 5224 14212 2.411 0.633 0.115 0.029 83 8.8 postcentral
- 1988 1280 3811 2.633 0.914 0.122 0.025 28 1.8 posteriorcingulate
- 8550 5433 17077 2.825 0.567 0.114 0.033 84 11.6 precentral
- 7295 4873 13726 2.676 0.513 0.121 0.029 86 8.0 precuneus
- 1542 1040 3258 2.963 0.490 0.122 0.035 23 1.9 rostralanteriorcingulate
- 9159 6323 20205 2.654 0.616 0.131 0.035 148 13.6 rostralmiddlefrontal
- 12063 8102 29249 3.011 0.615 0.121 0.034 147 16.8 superiorfrontal
- 10322 6789 18926 2.416 0.523 0.126 0.033 146 13.0 superiorparietal
- 7017 4774 16415 2.994 0.627 0.115 0.030 83 8.3 superiortemporal
- 6916 4664 14995 2.853 0.549 0.125 0.030 90 8.0 supramarginal
- 453 296 1143 2.649 0.580 0.164 0.063 12 1.1 frontalpole
- 735 507 2826 3.674 0.858 0.121 0.044 14 1.3 temporalpole
- 1016 613 1533 2.219 0.639 0.116 0.041 12 1.3 transversetemporal
- 3946 2550 7267 2.964 0.710 0.128 0.043 52 7.2 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.pial.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab 0050116 lh pial
- computing statistics for each annotation in ../label/lh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1749 1121 3381 2.878 0.462 0.130 0.037 24 2.8 bankssts
- 1102 896 2255 2.892 0.763 0.168 0.044 28 2.1 caudalanteriorcingulate
- 4640 3721 10216 2.891 0.516 0.135 0.033 66 6.4 caudalmiddlefrontal
- 3208 2458 4084 1.836 0.447 0.138 0.035 41 4.9 cuneus
- 642 726 2073 3.400 0.758 0.192 0.048 19 1.5 entorhinal
- 5917 5030 12376 2.745 0.596 0.157 0.041 113 11.5 fusiform
- 7636 6033 15281 2.708 0.518 0.146 0.039 120 12.8 inferiorparietal
- 5905 4897 12517 2.771 0.691 0.161 0.046 109 12.9 inferiortemporal
- 2047 1642 4083 2.729 0.891 0.158 0.046 41 4.1 isthmuscingulate
- 9362 6889 13462 2.139 0.594 0.131 0.037 154 16.0 lateraloccipital
- 4595 3694 9531 2.827 0.603 0.157 0.043 90 9.0 lateralorbitofrontal
- 4827 3721 7333 2.190 0.710 0.144 0.041 91 8.6 lingual
- 3712 3264 8046 2.808 0.727 0.172 0.045 79 7.9 medialorbitofrontal
- 5648 5706 14991 3.126 0.741 0.184 0.044 90 11.7 middletemporal
- 1488 1125 3049 2.990 0.804 0.112 0.028 15 1.9 parahippocampal
- 2517 1667 4479 2.856 0.494 0.107 0.032 102 4.0 paracentral
- 2279 2008 4888 2.768 0.547 0.157 0.041 43 4.5 parsopercularis
- 1168 1203 2864 2.770 0.592 0.193 0.041 25 2.4 parsorbitalis
- 1926 1648 3896 2.624 0.509 0.155 0.035 32 3.4 parstriangularis
- 2813 1411 2622 1.702 0.460 0.109 0.036 66 4.2 pericalcarine
- 8114 6499 14212 2.411 0.633 0.132 0.030 81 11.0 postcentral
- 1988 1623 3811 2.633 0.914 0.160 0.042 42 4.3 posteriorcingulate
- 8550 6406 17077 2.825 0.567 0.119 0.028 107 11.1 precentral
- 7295 5323 13726 2.676 0.513 0.133 0.036 110 10.9 precuneus
- 1542 1313 3258 2.963 0.490 0.169 0.047 34 3.2 rostralanteriorcingulate
- 9159 8385 20205 2.654 0.616 0.172 0.042 151 18.1 rostralmiddlefrontal
- 12063 10678 29249 3.011 0.615 0.154 0.038 202 19.2 superiorfrontal
- 10322 8500 18926 2.416 0.523 0.149 0.035 195 15.9 superiorparietal
- 7017 6094 16415 2.994 0.627 0.162 0.045 130 14.3 superiortemporal
- 6916 5748 14995 2.853 0.549 0.148 0.039 97 11.9 supramarginal
- 453 538 1143 2.649 0.580 0.223 0.065 8 1.2 frontalpole
- 735 984 2826 3.674 0.858 0.185 0.040 11 1.4 temporalpole
- 1016 835 1533 2.219 0.639 0.147 0.043 10 1.9 transversetemporal
- 3946 2378 7267 2.964 0.710 0.157 0.058 120 9.8 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050116 rh white
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1220 843 2016 2.516 0.352 0.100 0.018 8 0.9 bankssts
- 840 548 1780 2.843 0.735 0.124 0.027 13 0.8 caudalanteriorcingulate
- 4141 2793 8753 2.807 0.536 0.115 0.027 43 4.4 caudalmiddlefrontal
- 3762 2409 4803 1.882 0.490 0.144 0.040 55 5.6 cuneus
- 543 400 1929 3.497 0.697 0.123 0.031 5 0.8 entorhinal
- 5389 3672 12173 2.851 0.634 0.128 0.031 71 6.5 fusiform
- 11028 7368 22519 2.655 0.562 0.125 0.031 145 13.0 inferiorparietal
- 5679 3766 12250 2.754 0.722 0.125 0.036 85 8.1 inferiortemporal
- 1607 1013 3291 2.823 0.784 0.120 0.028 21 1.5 isthmuscingulate
- 10041 6383 15140 2.122 0.576 0.140 0.041 158 16.9 lateraloccipital
- 4894 3249 10023 2.768 0.688 0.139 0.040 80 7.7 lateralorbitofrontal
- 5704 3749 9239 2.192 0.711 0.138 0.041 80 8.9 lingual
- 3358 2283 7430 2.793 0.665 0.129 0.033 61 4.4 medialorbitofrontal
- 6184 4146 13707 2.742 0.629 0.118 0.029 78 7.5 middletemporal
- 1420 900 2656 2.672 0.739 0.107 0.035 17 1.8 parahippocampal
- 3055 1804 5178 2.697 0.488 0.108 0.035 33 3.9 paracentral
- 1785 1192 3865 2.913 0.408 0.104 0.022 16 1.5 parsopercularis
- 1348 934 3535 2.930 0.527 0.138 0.032 26 1.6 parsorbitalis
- 1938 1341 3925 2.694 0.450 0.116 0.028 19 2.0 parstriangularis
- 3293 2181 2945 1.589 0.411 0.146 0.044 45 5.9 pericalcarine
- 7639 4915 12923 2.336 0.664 0.115 0.032 88 9.0 postcentral
- 1752 1149 3230 2.489 1.192 0.128 0.030 29 2.0 posteriorcingulate
- 9255 5990 17926 2.758 0.568 0.116 0.032 92 11.6 precentral
- 7663 5010 14535 2.762 0.542 0.122 0.030 92 8.6 precuneus
- 940 647 2070 2.863 0.487 0.144 0.048 20 1.5 rostralanteriorcingulate
- 9725 6579 21068 2.663 0.583 0.131 0.034 157 13.2 rostralmiddlefrontal
- 12498 8519 29952 2.982 0.609 0.124 0.032 154 14.9 superiorfrontal
- 9770 6391 18077 2.437 0.516 0.119 0.031 115 11.1 superiorparietal
- 6651 4470 14261 2.776 0.627 0.115 0.030 80 8.0 superiortemporal
- 4988 3331 10279 2.734 0.506 0.122 0.027 58 5.4 supramarginal
- 555 336 1648 3.029 0.653 0.167 0.077 17 1.9 frontalpole
- 732 509 2850 3.699 0.631 0.142 0.046 10 1.6 temporalpole
- 480 329 779 2.318 0.627 0.158 0.058 8 1.2 transversetemporal
- 3431 2249 6829 3.052 0.658 0.122 0.040 40 5.2 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab 0050116 rh pial
- computing statistics for each annotation in ../label/rh.aparc.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1220 770 2016 2.516 0.352 0.124 0.030 16 1.8 bankssts
- 840 731 1780 2.843 0.735 0.173 0.048 22 1.8 caudalanteriorcingulate
- 4141 3295 8753 2.807 0.536 0.134 0.030 52 5.4 caudalmiddlefrontal
- 3762 2844 4803 1.882 0.490 0.138 0.036 53 5.9 cuneus
- 543 689 1929 3.497 0.697 0.223 0.051 15 1.3 entorhinal
- 5389 4702 12173 2.851 0.634 0.158 0.041 94 10.1 fusiform
- 11028 9140 22519 2.655 0.562 0.152 0.040 178 19.0 inferiorparietal
- 5679 5007 12250 2.754 0.722 0.166 0.046 90 12.6 inferiortemporal
- 1607 1285 3291 2.823 0.784 0.163 0.045 45 3.0 isthmuscingulate
- 10041 7768 15140 2.122 0.576 0.140 0.036 169 17.0 lateraloccipital
- 4894 3962 10023 2.768 0.688 0.165 0.048 104 10.3 lateralorbitofrontal
- 5704 4632 9239 2.192 0.711 0.149 0.040 100 10.1 lingual
- 3358 2990 7430 2.793 0.665 0.164 0.042 62 6.0 medialorbitofrontal
- 6184 5725 13707 2.742 0.629 0.162 0.039 88 11.6 middletemporal
- 1420 1069 2656 2.672 0.739 0.148 0.042 29 2.8 parahippocampal
- 3055 1945 5178 2.697 0.488 0.110 0.030 48 3.9 paracentral
- 1785 1454 3865 2.913 0.408 0.145 0.037 27 3.0 parsopercularis
- 1348 1442 3535 2.930 0.527 0.185 0.040 22 2.4 parsorbitalis
- 1938 1571 3925 2.694 0.450 0.147 0.036 25 3.3 parstriangularis
- 3293 1716 2945 1.589 0.411 0.109 0.033 75 4.5 pericalcarine
- 7639 6088 12923 2.336 0.664 0.133 0.029 79 10.2 postcentral
- 1752 1480 3230 2.489 1.192 0.162 0.047 32 3.7 posteriorcingulate
- 9255 6823 17926 2.758 0.568 0.119 0.027 115 11.0 precentral
- 7663 5497 14535 2.762 0.542 0.134 0.036 118 11.7 precuneus
- 940 814 2070 2.863 0.487 0.157 0.040 12 1.8 rostralanteriorcingulate
- 9725 8889 21068 2.663 0.583 0.169 0.040 155 18.0 rostralmiddlefrontal
- 12498 10926 29952 2.982 0.609 0.156 0.048 313 29.9 superiorfrontal
- 9770 8063 18077 2.437 0.516 0.144 0.034 148 14.6 superiorparietal
- 6651 5828 14261 2.776 0.627 0.164 0.044 98 14.0 superiortemporal
- 4988 4079 10279 2.734 0.506 0.152 0.039 75 8.9 supramarginal
- 555 725 1648 3.029 0.653 0.248 0.059 7 1.7 frontalpole
- 732 1000 2850 3.699 0.631 0.220 0.051 9 1.8 temporalpole
- 480 359 779 2.318 0.627 0.130 0.036 5 0.8 transversetemporal
- 3431 2108 6829 3.052 0.658 0.150 0.054 125 9.0 insula
- PIDs (3901 3904 3907 3910) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 2 lh Sun Oct 8 03:04:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- #-----------------------------------------
- #@# Cortical Parc 2 rh Sun Oct 8 03:04:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- Waiting for PID 4039 of (4039 4042) to complete...
- Waiting for PID 4042 of (4039 4042) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 2.9 using min determinant for regularization = 0.086
- 0 singular and 762 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 32 labels changed using aseg
- relabeling using gibbs priors...
- 000: 10163 changed, 159161 examined...
- 001: 2369 changed, 39990 examined...
- 002: 650 changed, 12557 examined...
- 003: 270 changed, 3762 examined...
- 004: 111 changed, 1542 examined...
- 005: 52 changed, 652 examined...
- 006: 29 changed, 300 examined...
- 007: 9 changed, 162 examined...
- 008: 3 changed, 53 examined...
- 009: 1 changed, 21 examined...
- 010: 1 changed, 7 examined...
- 011: 0 changed, 8 examined...
- 0 labels changed using aseg
- 000: 342 total segments, 251 labels (2491 vertices) changed
- 001: 101 total segments, 10 labels (84 vertices) changed
- 002: 91 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 35 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1566 vertices marked for relabeling...
- 1566 labels changed in reclassification.
- writing output to ../label/lh.aparc.a2009s.annot...
- classification took 0 minutes and 23 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 719 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 23 labels changed using aseg
- relabeling using gibbs priors...
- 000: 10257 changed, 160959 examined...
- 001: 2369 changed, 40138 examined...
- 002: 711 changed, 12333 examined...
- 003: 316 changed, 3993 examined...
- 004: 168 changed, 1790 examined...
- 005: 102 changed, 963 examined...
- 006: 57 changed, 582 examined...
- 007: 38 changed, 336 examined...
- 008: 23 changed, 215 examined...
- 009: 7 changed, 124 examined...
- 010: 1 changed, 43 examined...
- 011: 0 changed, 6 examined...
- 8 labels changed using aseg
- 000: 299 total segments, 215 labels (3205 vertices) changed
- 001: 99 total segments, 14 labels (107 vertices) changed
- 002: 84 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 48 changed)
- rationalizing unknown annotations with cortex label
- relabeling Medial_wall label...
- 1111 vertices marked for relabeling...
- 1111 labels changed in reclassification.
- writing output to ../label/rh.aparc.a2009s.annot...
- classification took 0 minutes and 23 seconds.
- PIDs (4039 4042) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 2 lh Sun Oct 8 03:04:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050116 lh white
- #-----------------------------------------
- #@# Parcellation Stats 2 rh Sun Oct 8 03:04:29 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050116 rh white
- Waiting for PID 4089 of (4089 4092) to complete...
- Waiting for PID 4092 of (4089 4092) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050116 lh white
- computing statistics for each annotation in ../label/lh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1266 826 2600 2.652 0.603 0.138 0.048 24 2.7 G&S_frontomargin
- 2340 1490 3827 2.356 0.568 0.140 0.042 40 3.7 G&S_occipital_inf
- 1889 1047 3641 2.767 0.530 0.117 0.065 36 6.4 G&S_paracentral
- 2009 1312 4785 3.018 0.560 0.128 0.031 27 2.2 G&S_subcentral
- 915 589 2400 2.748 0.646 0.155 0.058 26 2.0 G&S_transv_frontopol
- 2804 1908 5668 2.884 0.455 0.125 0.035 44 3.7 G&S_cingul-Ant
- 1501 1027 3230 3.123 0.574 0.113 0.024 18 1.3 G&S_cingul-Mid-Ant
- 1525 1002 2994 3.009 0.548 0.117 0.026 17 1.5 G&S_cingul-Mid-Post
- 838 538 2449 3.268 0.526 0.149 0.043 17 1.4 G_cingul-Post-dorsal
- 369 228 961 2.936 0.942 0.136 0.059 9 0.8 G_cingul-Post-ventral
- 2953 1905 3742 1.771 0.509 0.144 0.041 46 4.9 G_cuneus
- 1317 868 3202 2.785 0.567 0.132 0.047 29 2.5 G_front_inf-Opercular
- 433 264 1178 3.048 0.388 0.124 0.031 8 0.5 G_front_inf-Orbital
- 1092 747 2654 2.698 0.525 0.129 0.034 19 1.4 G_front_inf-Triangul
- 5398 3708 15170 2.917 0.654 0.142 0.043 107 9.6 G_front_middle
- 8166 5410 22425 3.094 0.657 0.131 0.043 127 14.2 G_front_sup
- 811 532 1588 2.795 0.728 0.146 0.056 14 1.7 G_Ins_lg&S_cent_ins
- 963 591 2376 3.042 0.877 0.147 0.063 21 2.8 G_insular_short
- 2707 1643 4723 2.427 0.522 0.135 0.046 53 4.4 G_occipital_middle
- 2327 1452 3629 2.097 0.742 0.136 0.036 33 3.0 G_occipital_sup
- 2717 1740 6253 2.799 0.593 0.140 0.042 55 4.0 G_oc-temp_lat-fusifor
- 3440 2259 5278 2.075 0.689 0.149 0.049 62 6.2 G_oc-temp_med-Lingual
- 1826 1169 4650 3.051 0.905 0.125 0.045 31 3.0 G_oc-temp_med-Parahip
- 3027 1976 7762 2.882 0.681 0.143 0.047 61 5.6 G_orbital
- 2710 1776 7403 2.972 0.658 0.144 0.050 67 5.3 G_pariet_inf-Angular
- 3501 2338 8715 2.952 0.580 0.138 0.035 61 4.6 G_pariet_inf-Supramar
- 3564 2381 8098 2.572 0.511 0.135 0.039 64 5.3 G_parietal_sup
- 3122 1895 6425 2.590 0.562 0.119 0.034 37 3.9 G_postcentral
- 3284 2014 7950 3.033 0.522 0.121 0.042 45 5.7 G_precentral
- 3763 2475 8590 2.731 0.503 0.136 0.037 69 5.5 G_precuneus
- 1290 842 3703 3.092 0.719 0.150 0.044 35 2.1 G_rectus
- 905 606 1719 2.832 1.000 0.115 0.056 14 1.9 G_subcallosal
- 837 494 1410 2.303 0.687 0.115 0.041 11 1.1 G_temp_sup-G_T_transv
- 2666 1794 8212 3.170 0.610 0.142 0.042 51 4.1 G_temp_sup-Lateral
- 999 658 2722 3.560 0.652 0.090 0.029 11 1.2 G_temp_sup-Plan_polar
- 1246 854 2795 2.872 0.466 0.095 0.024 14 1.1 G_temp_sup-Plan_tempo
- 2965 1902 6760 2.759 0.738 0.145 0.056 63 7.0 G_temporal_inf
- 3354 2173 10489 3.340 0.718 0.154 0.051 74 6.7 G_temporal_middle
- 280 196 434 2.467 0.494 0.105 0.012 2 0.1 Lat_Fis-ant-Horizont
- 301 212 456 2.456 0.449 0.096 0.016 1 0.2 Lat_Fis-ant-Vertical
- 1232 817 1600 2.492 0.455 0.118 0.026 11 1.2 Lat_Fis-post
- 2404 1517 2943 1.806 0.524 0.163 0.056 51 5.2 Pole_occipital
- 1802 1236 5688 3.156 0.825 0.145 0.050 31 3.7 Pole_temporal
- 3042 2041 3444 2.059 0.675 0.138 0.036 37 4.3 S_calcarine
- 3903 2598 4722 2.080 0.529 0.110 0.028 26 4.3 S_central
- 1202 834 1937 2.554 0.487 0.088 0.013 5 0.7 S_cingul-Marginalis
- 515 344 851 3.020 0.512 0.101 0.022 3 0.5 S_circular_insula_ant
- 1567 1048 2609 3.172 0.585 0.098 0.023 8 1.5 S_circular_insula_inf
- 1648 1109 2470 2.882 0.386 0.102 0.020 8 1.4 S_circular_insula_sup
- 990 688 1754 2.904 0.442 0.090 0.015 4 0.5 S_collat_transv_ant
- 347 242 463 2.330 0.558 0.148 0.030 4 0.6 S_collat_transv_post
- 2909 2024 4742 2.463 0.445 0.098 0.017 17 2.0 S_front_inf
- 1481 1048 2788 2.480 0.565 0.115 0.025 14 1.4 S_front_middle
- 3714 2491 6506 2.698 0.415 0.102 0.019 23 3.0 S_front_sup
- 295 215 486 2.772 0.376 0.144 0.022 2 0.4 S_interm_prim-Jensen
- 3030 2064 4499 2.354 0.363 0.103 0.018 23 2.4 S_intrapariet&P_trans
- 1183 757 1572 2.163 0.559 0.129 0.035 11 1.6 S_oc_middle&Lunatus
- 2165 1418 3065 2.227 0.415 0.128 0.032 27 2.6 S_oc_sup&transversal
- 970 615 1715 2.610 0.558 0.108 0.025 8 0.9 S_occipital_ant
- 1342 922 2278 2.612 0.616 0.126 0.027 17 1.6 S_oc-temp_lat
- 2695 1855 4318 2.626 0.637 0.110 0.022 22 2.2 S_oc-temp_med&Lingual
- 341 248 657 2.496 0.465 0.144 0.031 5 0.4 S_orbital_lateral
- 776 520 1053 2.535 0.505 0.108 0.021 5 0.6 S_orbital_med-olfact
- 1680 1135 3100 2.764 0.538 0.120 0.030 21 2.0 S_orbital-H_Shaped
- 2948 1961 4323 2.442 0.519 0.106 0.022 21 2.5 S_parieto_occipital
- 1558 955 1613 1.979 0.919 0.116 0.021 23 1.2 S_pericallosal
- 4158 2768 6179 2.470 0.412 0.103 0.023 30 3.6 S_postcentral
- 2152 1435 3764 3.009 0.421 0.110 0.020 14 1.8 S_precentral-inf-part
- 1154 804 1897 2.606 0.415 0.095 0.019 6 0.7 S_precentral-sup-part
- 792 542 1281 2.705 0.461 0.112 0.017 6 0.7 S_suborbital
- 1493 999 2278 2.685 0.458 0.114 0.023 10 1.4 S_subparietal
- 1767 1260 3251 2.667 0.584 0.115 0.023 14 1.7 S_temporal_inf
- 7040 4813 12520 2.779 0.487 0.109 0.023 52 6.4 S_temporal_sup
- 562 395 707 2.138 0.350 0.113 0.020 4 0.5 S_temporal_transverse
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab 0050116 rh white
- computing statistics for each annotation in ../label/rh.aparc.a2009s.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Saving annotation colortable ../label/aparc.annot.a2009s.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 973 654 1946 2.528 0.582 0.138 0.036 18 1.4 G&S_frontomargin
- 2003 1314 3994 2.536 0.591 0.138 0.035 31 2.8 G&S_occipital_inf
- 1918 1057 3349 2.520 0.567 0.112 0.042 25 3.0 G&S_paracentral
- 1556 1030 3516 2.988 0.531 0.133 0.033 25 1.8 G&S_subcentral
- 1342 893 3643 2.823 0.647 0.158 0.057 35 2.9 G&S_transv_frontopol
- 3798 2561 7709 2.843 0.521 0.120 0.031 56 4.6 G&S_cingul-Ant
- 1564 1051 3505 3.172 0.480 0.106 0.023 14 1.5 G&S_cingul-Mid-Ant
- 1737 1158 3426 2.989 0.662 0.117 0.028 18 1.9 G&S_cingul-Mid-Post
- 660 413 1878 3.117 0.803 0.146 0.035 12 0.9 G_cingul-Post-dorsal
- 325 212 866 3.035 0.708 0.123 0.043 6 0.3 G_cingul-Post-ventral
- 3504 2254 4410 1.777 0.515 0.145 0.043 50 5.8 G_cuneus
- 1230 836 3443 3.038 0.436 0.116 0.028 17 1.4 G_front_inf-Opercular
- 286 200 886 3.006 0.356 0.117 0.034 4 0.4 G_front_inf-Orbital
- 801 534 2042 2.917 0.372 0.131 0.039 10 1.1 G_front_inf-Triangul
- 4625 3048 12840 2.972 0.526 0.137 0.039 87 7.4 G_front_middle
- 7942 5310 22007 3.087 0.638 0.137 0.042 136 12.1 G_front_sup
- 668 459 1634 3.255 0.717 0.137 0.043 10 1.0 G_Ins_lg&S_cent_ins
- 1052 638 2383 2.855 1.005 0.140 0.068 21 2.5 G_insular_short
- 3616 2285 7126 2.462 0.564 0.137 0.043 67 6.1 G_occipital_middle
- 2019 1221 3939 2.371 0.700 0.123 0.033 27 2.3 G_occipital_sup
- 2475 1622 6610 3.049 0.576 0.147 0.039 50 4.0 G_oc-temp_lat-fusifor
- 3685 2357 6427 2.201 0.753 0.146 0.047 58 6.6 G_oc-temp_med-Lingual
- 1482 998 4099 3.045 0.883 0.119 0.045 17 2.4 G_oc-temp_med-Parahip
- 3379 2239 8711 2.915 0.657 0.146 0.046 70 6.0 G_orbital
- 3989 2621 10348 2.868 0.628 0.141 0.038 72 5.7 G_pariet_inf-Angular
- 2346 1564 5951 2.875 0.549 0.134 0.033 33 2.9 G_pariet_inf-Supramar
- 3020 1948 7144 2.661 0.507 0.134 0.045 55 4.6 G_parietal_sup
- 2946 1760 5702 2.436 0.618 0.125 0.042 45 4.5 G_postcentral
- 3669 2274 8777 2.934 0.534 0.126 0.042 50 5.8 G_precentral
- 3179 2059 7602 2.805 0.514 0.135 0.040 56 4.6 G_precuneus
- 920 610 2626 2.954 0.633 0.149 0.048 25 1.6 G_rectus
- 275 216 591 2.956 1.127 0.156 0.059 6 0.5 G_subcallosal
- 420 269 781 2.434 0.711 0.126 0.050 6 0.7 G_temp_sup-G_T_transv
- 2653 1755 6271 2.744 0.664 0.139 0.040 50 4.6 G_temp_sup-Lateral
- 1075 745 2885 3.082 0.687 0.118 0.032 14 1.5 G_temp_sup-Plan_polar
- 861 555 1663 2.588 0.493 0.113 0.030 10 0.9 G_temp_sup-Plan_tempo
- 3300 2142 8389 2.957 0.777 0.139 0.046 68 6.1 G_temporal_inf
- 3522 2356 8935 2.829 0.668 0.126 0.033 56 4.7 G_temporal_middle
- 350 249 501 2.419 0.395 0.097 0.014 1 0.2 Lat_Fis-ant-Horizont
- 233 157 420 2.866 0.362 0.093 0.022 1 0.2 Lat_Fis-ant-Vertical
- 1307 871 1859 2.686 0.422 0.116 0.023 9 1.2 Lat_Fis-post
- 4692 2956 5357 1.695 0.430 0.146 0.048 86 9.8 Pole_occipital
- 1860 1231 5668 3.159 0.789 0.155 0.056 31 4.1 Pole_temporal
- 3035 2067 3652 2.125 0.862 0.140 0.038 35 4.7 S_calcarine
- 4181 2815 4991 2.106 0.569 0.113 0.027 28 4.5 S_central
- 1666 1115 2664 2.583 0.437 0.103 0.019 10 1.3 S_cingul-Marginalis
- 561 378 1099 3.291 0.602 0.109 0.025 4 0.6 S_circular_insula_ant
- 1295 839 2091 2.976 0.553 0.079 0.014 4 0.8 S_circular_insula_inf
- 1244 853 1950 2.842 0.370 0.096 0.019 5 1.0 S_circular_insula_sup
- 1198 842 2004 2.498 0.537 0.094 0.014 6 0.8 S_collat_transv_ant
- 754 499 921 2.134 0.454 0.146 0.033 10 0.9 S_collat_transv_post
- 2135 1473 3403 2.481 0.427 0.102 0.017 13 1.6 S_front_inf
- 2693 1863 4404 2.414 0.508 0.123 0.027 32 2.9 S_front_middle
- 3464 2370 6278 2.656 0.495 0.108 0.023 28 3.1 S_front_sup
- 446 317 886 2.505 0.485 0.093 0.019 3 0.3 S_interm_prim-Jensen
- 4595 3083 6868 2.318 0.377 0.109 0.022 35 4.1 S_intrapariet&P_trans
- 768 527 965 2.004 0.309 0.122 0.025 6 0.7 S_oc_middle&Lunatus
- 1582 1045 1981 2.163 0.389 0.118 0.027 14 1.6 S_oc_sup&transversal
- 1026 676 1498 2.550 0.415 0.129 0.029 10 1.2 S_occipital_ant
- 1259 851 1852 2.413 0.413 0.099 0.016 7 0.8 S_oc-temp_lat
- 2621 1808 4134 2.522 0.573 0.106 0.019 21 1.9 S_oc-temp_med&Lingual
- 636 442 987 2.348 0.408 0.125 0.024 8 0.7 S_orbital_lateral
- 689 481 1081 2.691 0.579 0.118 0.024 7 0.7 S_orbital_med-olfact
- 1901 1290 3419 2.714 0.538 0.134 0.027 26 2.1 S_orbital-H_Shaped
- 3007 1944 4419 2.623 0.575 0.120 0.024 29 2.8 S_parieto_occipital
- 1137 684 960 1.824 1.138 0.131 0.027 21 0.9 S_pericallosal
- 3047 2036 4512 2.500 0.465 0.095 0.017 14 2.2 S_postcentral
- 2050 1412 3341 2.717 0.480 0.104 0.018 14 1.4 S_precentral-inf-part
- 1512 1057 2458 2.661 0.424 0.096 0.016 7 1.1 S_precentral-sup-part
- 633 429 941 2.500 0.580 0.117 0.018 5 0.5 S_suborbital
- 1971 1335 3136 2.592 0.424 0.111 0.023 15 1.7 S_subparietal
- 1521 1056 2360 2.447 0.496 0.096 0.016 8 1.1 S_temporal_inf
- 7301 5026 12256 2.596 0.470 0.104 0.020 50 5.6 S_temporal_sup
- 205 161 338 2.248 0.358 0.158 0.052 3 0.6 S_temporal_transverse
- PIDs (4089 4092) completed and logs appended.
- #-----------------------------------------
- #@# Cortical Parc 3 lh Sun Oct 8 03:05:26 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- #-----------------------------------------
- #@# Cortical Parc 3 rh Sun Oct 8 03:05:26 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- Waiting for PID 4168 of (4168 4171) to complete...
- Waiting for PID 4171 of (4168 4171) to complete...
- mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 lh ../surf/lh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/lh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/lh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 1.4 using min determinant for regularization = 0.020
- 0 singular and 383 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1477 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2267 changed, 159161 examined...
- 001: 525 changed, 10494 examined...
- 002: 146 changed, 2982 examined...
- 003: 43 changed, 859 examined...
- 004: 19 changed, 267 examined...
- 005: 5 changed, 104 examined...
- 006: 7 changed, 30 examined...
- 007: 6 changed, 40 examined...
- 008: 4 changed, 37 examined...
- 009: 4 changed, 24 examined...
- 010: 3 changed, 18 examined...
- 011: 8 changed, 23 examined...
- 012: 6 changed, 32 examined...
- 013: 5 changed, 38 examined...
- 014: 2 changed, 25 examined...
- 015: 0 changed, 14 examined...
- 135 labels changed using aseg
- 000: 57 total segments, 24 labels (286 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 7 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 1398 vertices marked for relabeling...
- 1398 labels changed in reclassification.
- writing output to ../label/lh.aparc.DKTatlas.annot...
- classification took 0 minutes and 19 seconds.
- mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 0050116 rh ../surf/rh.sphere.reg /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot
- setting seed for random number generator to 1234
- using ../mri/aseg.presurf.mgz aseg volume to correct midline
- $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $
- $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
- reading atlas from /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs...
- reading color table from GCSA file....
- average std = 0.9 using min determinant for regularization = 0.009
- 0 singular and 325 ill-conditioned covariance matrices regularized
- input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
- labeling surface...
- 1556 labels changed using aseg
- relabeling using gibbs priors...
- 000: 2180 changed, 160959 examined...
- 001: 536 changed, 10205 examined...
- 002: 167 changed, 3115 examined...
- 003: 75 changed, 1031 examined...
- 004: 37 changed, 419 examined...
- 005: 15 changed, 220 examined...
- 006: 10 changed, 102 examined...
- 007: 3 changed, 55 examined...
- 008: 0 changed, 18 examined...
- 184 labels changed using aseg
- 000: 62 total segments, 29 labels (356 vertices) changed
- 001: 33 total segments, 0 labels (0 vertices) changed
- 10 filter iterations complete (10 requested, 7 changed)
- rationalizing unknown annotations with cortex label
- relabeling unknown label...
- relabeling corpuscallosum label...
- 661 vertices marked for relabeling...
- 661 labels changed in reclassification.
- writing output to ../label/rh.aparc.DKTatlas.annot...
- classification took 0 minutes and 19 seconds.
- PIDs (4168 4171) completed and logs appended.
- #-----------------------------------------
- #@# Parcellation Stats 3 lh Sun Oct 8 03:05:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050116 lh white
- #-----------------------------------------
- #@# Parcellation Stats 3 rh Sun Oct 8 03:05:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050116 rh white
- Waiting for PID 4231 of (4231 4234) to complete...
- Waiting for PID 4234 of (4231 4234) to complete...
- mris_anatomical_stats -th3 -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas.stats -b -a ../label/lh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050116 lh white
- computing statistics for each annotation in ../label/lh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1641 1102 3375 2.969 0.709 0.126 0.027 28 1.7 caudalanteriorcingulate
- 4953 3340 11021 2.891 0.520 0.119 0.029 52 5.8 caudalmiddlefrontal
- 4333 2853 5796 1.961 0.486 0.129 0.035 54 5.8 cuneus
- 574 422 1874 3.369 0.903 0.135 0.045 7 1.0 entorhinal
- 5497 3675 11164 2.721 0.578 0.130 0.033 84 6.8 fusiform
- 7553 5007 15303 2.732 0.528 0.127 0.033 106 10.2 inferiorparietal
- 5869 3875 13287 2.842 0.682 0.135 0.045 100 10.9 inferiortemporal
- 2022 1263 4060 2.759 0.878 0.129 0.039 34 3.0 isthmuscingulate
- 9564 5958 13781 2.129 0.594 0.141 0.044 161 16.2 lateraloccipital
- 5253 3430 10881 2.781 0.643 0.133 0.042 86 8.9 lateralorbitofrontal
- 4902 3310 7344 2.160 0.693 0.141 0.042 77 7.6 lingual
- 2863 1907 6484 2.861 0.748 0.130 0.039 54 4.3 medialorbitofrontal
- 7609 5117 18350 3.003 0.719 0.128 0.036 106 10.7 middletemporal
- 1607 998 3334 3.021 0.790 0.105 0.031 19 1.9 parahippocampal
- 2929 1716 5264 2.839 0.544 0.101 0.046 36 6.9 paracentral
- 2149 1465 4605 2.802 0.529 0.118 0.035 32 2.9 parsopercularis
- 1055 702 2291 2.764 0.523 0.112 0.022 10 1.0 parsorbitalis
- 2403 1613 4626 2.579 0.506 0.109 0.024 26 2.3 parstriangularis
- 2729 1814 2549 1.710 0.460 0.144 0.039 35 4.2 pericalcarine
- 9048 5891 15924 2.434 0.633 0.117 0.029 94 9.8 postcentral
- 2229 1434 4090 2.621 0.901 0.121 0.026 30 2.1 posteriorcingulate
- 8523 5417 16891 2.828 0.560 0.114 0.033 83 11.4 precentral
- 7132 4756 13820 2.693 0.512 0.123 0.029 89 7.8 precuneus
- 2119 1430 4404 2.939 0.494 0.127 0.038 34 2.9 rostralanteriorcingulate
- 6713 4651 14954 2.636 0.603 0.128 0.034 106 9.4 rostralmiddlefrontal
- 13237 8917 32656 2.969 0.629 0.127 0.037 194 20.3 superiorfrontal
- 8129 5360 15102 2.424 0.532 0.126 0.034 119 10.3 superiorparietal
- 9073 6155 21590 3.010 0.681 0.117 0.033 112 11.5 superiortemporal
- 6392 4297 13603 2.820 0.537 0.123 0.029 84 7.1 supramarginal
- 1009 609 1521 2.221 0.641 0.115 0.040 12 1.2 transversetemporal
- 3168 2072 6195 3.062 0.678 0.123 0.039 39 5.1 insula
- mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab 0050116 rh white
- computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness.
- Using TH3 vertex volume calc
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 927 596 1878 2.838 0.722 0.127 0.028 14 1.0 caudalanteriorcingulate
- 4386 2957 9280 2.813 0.526 0.117 0.028 48 5.0 caudalmiddlefrontal
- 4318 2770 5646 1.943 0.502 0.139 0.037 58 6.2 cuneus
- 510 384 1867 3.496 0.699 0.119 0.030 4 0.6 entorhinal
- 5001 3422 11106 2.839 0.604 0.129 0.031 67 6.0 fusiform
- 10732 7152 21752 2.651 0.562 0.124 0.031 139 12.7 inferiorparietal
- 6059 4024 13407 2.762 0.737 0.125 0.036 90 8.7 inferiortemporal
- 1607 1009 3314 2.847 0.766 0.119 0.029 20 1.6 isthmuscingulate
- 10383 6549 15624 2.121 0.584 0.139 0.041 165 17.6 lateraloccipital
- 5355 3570 11185 2.747 0.693 0.142 0.042 98 9.0 lateralorbitofrontal
- 5572 3657 9023 2.191 0.697 0.139 0.040 79 8.7 lingual
- 2156 1484 4846 2.752 0.709 0.132 0.034 39 2.9 medialorbitofrontal
- 7276 4906 15684 2.721 0.613 0.116 0.028 85 8.3 middletemporal
- 1500 960 2835 2.722 0.754 0.106 0.034 17 1.9 parahippocampal
- 3170 1872 5490 2.708 0.495 0.108 0.036 35 4.1 paracentral
- 1973 1318 4187 2.897 0.403 0.105 0.023 18 1.7 parsopercularis
- 1088 715 2576 2.854 0.531 0.126 0.031 15 1.4 parsorbitalis
- 2088 1432 4081 2.642 0.456 0.116 0.027 21 2.2 parstriangularis
- 3229 2159 2915 1.586 0.412 0.144 0.042 41 5.4 pericalcarine
- 8570 5542 14530 2.353 0.653 0.118 0.032 97 10.4 postcentral
- 1862 1229 3354 2.496 1.184 0.127 0.030 30 2.1 posteriorcingulate
- 8935 5758 17334 2.762 0.573 0.116 0.033 90 11.2 precentral
- 7757 5103 14978 2.755 0.546 0.123 0.030 93 8.9 precuneus
- 1360 932 2870 2.856 0.600 0.137 0.046 27 2.0 rostralanteriorcingulate
- 7042 4791 15386 2.645 0.566 0.130 0.032 109 8.9 rostralmiddlefrontal
- 16031 10874 38268 2.948 0.617 0.126 0.034 224 21.0 superiorfrontal
- 7958 5219 14799 2.441 0.515 0.119 0.032 98 8.8 superiorparietal
- 8371 5635 18647 2.832 0.667 0.118 0.032 101 11.0 superiortemporal
- 4709 3142 9859 2.735 0.505 0.122 0.028 58 5.1 supramarginal
- 456 305 725 2.300 0.630 0.156 0.059 8 1.1 transversetemporal
- 3009 1993 6260 3.135 0.610 0.119 0.036 34 4.0 insula
- PIDs (4231 4234) completed and logs appended.
- #-----------------------------------------
- #@# WM/GM Contrast lh Sun Oct 8 03:06:37 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- pctsurfcon --s 0050116 --lh-only
- #-----------------------------------------
- #@# WM/GM Contrast rh Sun Oct 8 03:06:37 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- pctsurfcon --s 0050116 --rh-only
- Waiting for PID 4291 of (4291 4301) to complete...
- Waiting for PID 4301 of (4291 4301) to complete...
- pctsurfcon --s 0050116 --lh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts/pctsurfcon.log
- Sun Oct 8 03:06:37 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-925 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4291/lh.wm.mgh --regheader 0050116 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 84849
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4291/lh.wm.mgh
- Dim: 159161 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4291/lh.gm.mgh --projfrac 0.3 --regheader 0050116 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = lh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 104429
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4291/lh.gm.mgh
- Dim: 159161 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4291/lh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4291/lh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.w-g.pct.mgh --annot 0050116 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/stats/lh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.w-g.pct.mgh --annot 0050116 lh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/stats/lh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 1000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.w-g.pct.mgh
- Vertex Area is 0.662331 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- pctsurfcon --s 0050116 --rh-only
- Log file is /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts/pctsurfcon.log
- Sun Oct 8 03:06:37 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/scripts
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/pctsurfcon
- $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $
- Linux tars-925 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4301/rh.wm.mgh --regheader 0050116 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjDist = -1
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Done reading source surface
- Mapping Source Volume onto Source Subject Surface
- 1 -1 -1 -1
- using old
- Done mapping volume to surface
- Number of source voxels hit = 85594
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4301/rh.wm.mgh
- Dim: 160959 1 1
- mri_vol2surf --mov /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4301/rh.gm.mgh --projfrac 0.3 --regheader 0050116 --cortex
- srcvol = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/rawavg.mgz
- srcreg unspecified
- srcregold = 0
- srcwarp unspecified
- surf = white
- hemi = rh
- ProjFrac = 0.3
- thickness = thickness
- reshape = 0
- interp = trilinear
- float2int = round
- GetProjMax = 0
- INFO: float2int code = 0
- INFO: changing type to float
- Done loading volume
- Computing registration from header.
- Using /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/orig.mgz as target reference.
- -------- original matrix -----------
- 1.00000 0.00000 0.00000 0.00000;
- 0.00000 0.00000 1.00000 0.00000;
- 0.00000 -1.00000 0.00000 0.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------- original matrix -----------
- Loading label /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label
- Reading surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Done reading source surface
- Reading thickness /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.thickness
- Done
- Mapping Source Volume onto Source Subject Surface
- 1 0.3 0.3 0.3
- using old
- Done mapping volume to surface
- Number of source voxels hit = 106367
- Masking with /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.cortex.label
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4301/rh.gm.mgh
- Dim: 160959 1 1
- mri_concat /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4301/rh.wm.mgh /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/tmp.pctsurfcon.4301/rh.gm.mgh --paired-diff-norm --mul 100 --o /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.w-g.pct.mgh
- ninputs = 2
- Checking inputs
- nframestot = 2
- Allocing output
- Done allocing
- Combining pairs
- nframes = 1
- Multiplying by 100.000000
- Writing to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.w-g.pct.mgh
- mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.w-g.pct.mgh --annot 0050116 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/stats/rh.w-g.pct.stats --snr
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --in /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.w-g.pct.mgh --annot 0050116 rh aparc --sum /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/stats/rh.w-g.pct.stats --snr
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- UseRobust 0
- Constructing seg from annotation
- Reading annotation /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Seg base 2000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.w-g.pct.mgh
- Vertex Area is 0.661743 mm^3
- Generating list of segmentation ids
- Found 36 segmentations
- Computing statistics for each segmentation
- Reporting on 35 segmentations
- Using PrintSegStat
- mri_segstats done
- Cleaning up
- PIDs (4291 4301) completed and logs appended.
- #-----------------------------------------
- #@# Relabel Hypointensities Sun Oct 8 03:06:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- mri_relabel_hypointensities aseg.presurf.mgz ../surf aseg.presurf.hypos.mgz
- reading input surface ../surf/lh.white...
- relabeling lh hypointensities...
- 1862 voxels changed to hypointensity...
- reading input surface ../surf/rh.white...
- relabeling rh hypointensities...
- 1520 voxels changed to hypointensity...
- 3467 hypointense voxels neighboring cortex changed
- #-----------------------------------------
- #@# AParc-to-ASeg aparc Sun Oct 8 03:07:15 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_aparc2aseg --s 0050116 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- #-----------------------------------------
- #@# AParc-to-ASeg a2009s Sun Oct 8 03:07:15 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_aparc2aseg --s 0050116 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- #-----------------------------------------
- #@# AParc-to-ASeg DKTatlas Sun Oct 8 03:07:15 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_aparc2aseg --s 0050116 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- Waiting for PID 4471 of (4471 4474 4477) to complete...
- Waiting for PID 4474 of (4471 4474 4477) to complete...
- Waiting for PID 4477 of (4471 4474 4477) to complete...
- mri_aparc2aseg --s 0050116 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050116
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aparc+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.09
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 108
- rescaling Left_Cerebral_Cortex from 61 --> 63
- rescaling Left_Lateral_Ventricle from 13 --> 21
- rescaling Left_Inf_Lat_Vent from 34 --> 36
- rescaling Left_Cerebellum_White_Matter from 86 --> 86
- rescaling Left_Cerebellum_Cortex from 60 --> 54
- rescaling Left_Thalamus from 94 --> 100
- rescaling Left_Thalamus_Proper from 84 --> 90
- rescaling Left_Caudate from 75 --> 71
- rescaling Left_Putamen from 80 --> 79
- rescaling Left_Pallidum from 98 --> 95
- rescaling Third_Ventricle from 25 --> 28
- rescaling Fourth_Ventricle from 22 --> 13
- rescaling Brain_Stem from 81 --> 85
- rescaling Left_Hippocampus from 57 --> 64
- rescaling Left_Amygdala from 56 --> 65
- rescaling CSF from 32 --> 40
- rescaling Left_Accumbens_area from 62 --> 64
- rescaling Left_VentralDC from 87 --> 90
- rescaling Right_Cerebral_White_Matter from 105 --> 104
- rescaling Right_Cerebral_Cortex from 58 --> 57
- rescaling Right_Lateral_Ventricle from 13 --> 18
- rescaling Right_Inf_Lat_Vent from 25 --> 25
- rescaling Right_Cerebellum_White_Matter from 87 --> 84
- rescaling Right_Cerebellum_Cortex from 59 --> 50
- rescaling Right_Thalamus_Proper from 85 --> 82
- rescaling Right_Caudate from 62 --> 73
- rescaling Right_Putamen from 80 --> 80
- rescaling Right_Pallidum from 97 --> 90
- rescaling Right_Hippocampus from 53 --> 59
- rescaling Right_Amygdala from 55 --> 62
- rescaling Right_Accumbens_area from 65 --> 71
- rescaling Right_VentralDC from 86 --> 94
- rescaling Fifth_Ventricle from 40 --> 36
- rescaling WM_hypointensities from 78 --> 80
- rescaling non_WM_hypointensities from 40 --> 56
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 603631
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 135 changed.
- pass 2: 7 changed.
- pass 3: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aparc+aseg.mgz
- mri_aparc2aseg --s 0050116 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --a2009s
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050116
- outvol /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aparc.a2009s+aseg.mgz
- useribbon 0
- baseoffset 10100
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.aparc.a2009s.annot
- reading colortable from annotation file...
- colortable with 76 entries read (originally Simple_surface_labels2008.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.09
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 108
- rescaling Left_Cerebral_Cortex from 61 --> 63
- rescaling Left_Lateral_Ventricle from 13 --> 21
- rescaling Left_Inf_Lat_Vent from 34 --> 36
- rescaling Left_Cerebellum_White_Matter from 86 --> 86
- rescaling Left_Cerebellum_Cortex from 60 --> 54
- rescaling Left_Thalamus from 94 --> 100
- rescaling Left_Thalamus_Proper from 84 --> 90
- rescaling Left_Caudate from 75 --> 71
- rescaling Left_Putamen from 80 --> 79
- rescaling Left_Pallidum from 98 --> 95
- rescaling Third_Ventricle from 25 --> 28
- rescaling Fourth_Ventricle from 22 --> 13
- rescaling Brain_Stem from 81 --> 85
- rescaling Left_Hippocampus from 57 --> 64
- rescaling Left_Amygdala from 56 --> 65
- rescaling CSF from 32 --> 40
- rescaling Left_Accumbens_area from 62 --> 64
- rescaling Left_VentralDC from 87 --> 90
- rescaling Right_Cerebral_White_Matter from 105 --> 104
- rescaling Right_Cerebral_Cortex from 58 --> 57
- rescaling Right_Lateral_Ventricle from 13 --> 18
- rescaling Right_Inf_Lat_Vent from 25 --> 25
- rescaling Right_Cerebellum_White_Matter from 87 --> 84
- rescaling Right_Cerebellum_Cortex from 59 --> 50
- rescaling Right_Thalamus_Proper from 85 --> 82
- rescaling Right_Caudate from 62 --> 73
- rescaling Right_Putamen from 80 --> 80
- rescaling Right_Pallidum from 97 --> 90
- rescaling Right_Hippocampus from 53 --> 59
- rescaling Right_Amygdala from 55 --> 62
- rescaling Right_Accumbens_area from 65 --> 71
- rescaling Right_VentralDC from 86 --> 94
- rescaling Fifth_Ventricle from 40 --> 36
- rescaling WM_hypointensities from 78 --> 80
- rescaling non_WM_hypointensities from 40 --> 56
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 603746
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 135 changed.
- pass 2: 7 changed.
- pass 3: 0 changed.
- nchanged = 0
- Writing output aseg to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aparc.a2009s+aseg.mgz
- mri_aparc2aseg --s 0050116 --volmask --aseg aseg.presurf.hypos --relabel mri/norm.mgz mri/transforms/talairach.m3z /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca mri/aseg.auto_noCCseg.label_intensities.txt --annot aparc.DKTatlas --o mri/aparc.DKTatlas+aseg.mgz
- relabeling unlikely voxels interior to white matter surface:
- norm: mri/norm.mgz
- XFORM: mri/transforms/talairach.m3z
- GCA: /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/RB_all_2016-05-10.vc700.gca
- label intensities: mri/aseg.auto_noCCseg.label_intensities.txt
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050116
- outvol mri/aparc.DKTatlas+aseg.mgz
- useribbon 0
- baseoffset 0
- RipUnknown 0
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.aparc.DKTatlas.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/ribbon.mgz
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aseg.presurf.hypos.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- relabeling unlikely voxels in interior of white matter
- setting orig areas to linear transform determinant scaled 7.09
- reading 47 labels from mri/aseg.auto_noCCseg.label_intensities.txt
- rescaling Left_Cerebral_White_Matter from 107 --> 108
- rescaling Left_Cerebral_Cortex from 61 --> 63
- rescaling Left_Lateral_Ventricle from 13 --> 21
- rescaling Left_Inf_Lat_Vent from 34 --> 36
- rescaling Left_Cerebellum_White_Matter from 86 --> 86
- rescaling Left_Cerebellum_Cortex from 60 --> 54
- rescaling Left_Thalamus from 94 --> 100
- rescaling Left_Thalamus_Proper from 84 --> 90
- rescaling Left_Caudate from 75 --> 71
- rescaling Left_Putamen from 80 --> 79
- rescaling Left_Pallidum from 98 --> 95
- rescaling Third_Ventricle from 25 --> 28
- rescaling Fourth_Ventricle from 22 --> 13
- rescaling Brain_Stem from 81 --> 85
- rescaling Left_Hippocampus from 57 --> 64
- rescaling Left_Amygdala from 56 --> 65
- rescaling CSF from 32 --> 40
- rescaling Left_Accumbens_area from 62 --> 64
- rescaling Left_VentralDC from 87 --> 90
- rescaling Right_Cerebral_White_Matter from 105 --> 104
- rescaling Right_Cerebral_Cortex from 58 --> 57
- rescaling Right_Lateral_Ventricle from 13 --> 18
- rescaling Right_Inf_Lat_Vent from 25 --> 25
- rescaling Right_Cerebellum_White_Matter from 87 --> 84
- rescaling Right_Cerebellum_Cortex from 59 --> 50
- rescaling Right_Thalamus_Proper from 85 --> 82
- rescaling Right_Caudate from 62 --> 73
- rescaling Right_Putamen from 80 --> 80
- rescaling Right_Pallidum from 97 --> 90
- rescaling Right_Hippocampus from 53 --> 59
- rescaling Right_Amygdala from 55 --> 62
- rescaling Right_Accumbens_area from 65 --> 71
- rescaling Right_VentralDC from 86 --> 94
- rescaling Fifth_Ventricle from 40 --> 36
- rescaling WM_hypointensities from 78 --> 80
- rescaling non_WM_hypointensities from 40 --> 56
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 603746
- Used brute-force search on 0 voxels
- relabeling unlikely voxels in interior of white matter
- average std[0] = 7.3
- pass 1: 135 changed.
- pass 2: 7 changed.
- pass 3: 0 changed.
- nchanged = 0
- Writing output aseg to mri/aparc.DKTatlas+aseg.mgz
- PIDs (4471 4474 4477) completed and logs appended.
- #-----------------------------------------
- #@# APas-to-ASeg Sun Oct 8 03:15:45 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- Sun Oct 8 03:15:45 CEST 2017
- setenv SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- cd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- /pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/apas2aseg --i aparc+aseg.mgz --o aseg.mgz
- freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
- $Id: apas2aseg,v 1.2 2016/02/12 21:43:14 zkaufman Exp $
- Linux tars-925 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
- mri_binarize --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri
- cmdline mri_binarize.bin --i aparc+aseg.mgz --o aseg.mgz --replace 1000 3 --replace 2000 42 --replace 1001 3 --replace 2001 42 --replace 1002 3 --replace 2002 42 --replace 1003 3 --replace 2003 42 --replace 1004 3 --replace 2004 42 --replace 1005 3 --replace 2005 42 --replace 1006 3 --replace 2006 42 --replace 1007 3 --replace 2007 42 --replace 1008 3 --replace 2008 42 --replace 1009 3 --replace 2009 42 --replace 1010 3 --replace 2010 42 --replace 1011 3 --replace 2011 42 --replace 1012 3 --replace 2012 42 --replace 1013 3 --replace 2013 42 --replace 1014 3 --replace 2014 42 --replace 1015 3 --replace 2015 42 --replace 1016 3 --replace 2016 42 --replace 1017 3 --replace 2017 42 --replace 1018 3 --replace 2018 42 --replace 1019 3 --replace 2019 42 --replace 1020 3 --replace 2020 42 --replace 1021 3 --replace 2021 42 --replace 1022 3 --replace 2022 42 --replace 1023 3 --replace 2023 42 --replace 1024 3 --replace 2024 42 --replace 1025 3 --replace 2025 42 --replace 1026 3 --replace 2026 42 --replace 1027 3 --replace 2027 42 --replace 1028 3 --replace 2028 42 --replace 1029 3 --replace 2029 42 --replace 1030 3 --replace 2030 42 --replace 1031 3 --replace 2031 42 --replace 1032 3 --replace 2032 42 --replace 1033 3 --replace 2033 42 --replace 1034 3 --replace 2034 42 --replace 1035 3 --replace 2035 42
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- input aparc+aseg.mgz
- frame 0
- nErode3d 0
- nErode2d 0
- output aseg.mgz
- Binarizing based on threshold
- min -infinity
- max +infinity
- binval 1
- binvalnot 0
- fstart = 0, fend = 0, nframes = 1
- Replacing 72
- 1: 1000 3
- 2: 2000 42
- 3: 1001 3
- 4: 2001 42
- 5: 1002 3
- 6: 2002 42
- 7: 1003 3
- 8: 2003 42
- 9: 1004 3
- 10: 2004 42
- 11: 1005 3
- 12: 2005 42
- 13: 1006 3
- 14: 2006 42
- 15: 1007 3
- 16: 2007 42
- 17: 1008 3
- 18: 2008 42
- 19: 1009 3
- 20: 2009 42
- 21: 1010 3
- 22: 2010 42
- 23: 1011 3
- 24: 2011 42
- 25: 1012 3
- 26: 2012 42
- 27: 1013 3
- 28: 2013 42
- 29: 1014 3
- 30: 2014 42
- 31: 1015 3
- 32: 2015 42
- 33: 1016 3
- 34: 2016 42
- 35: 1017 3
- 36: 2017 42
- 37: 1018 3
- 38: 2018 42
- 39: 1019 3
- 40: 2019 42
- 41: 1020 3
- 42: 2020 42
- 43: 1021 3
- 44: 2021 42
- 45: 1022 3
- 46: 2022 42
- 47: 1023 3
- 48: 2023 42
- 49: 1024 3
- 50: 2024 42
- 51: 1025 3
- 52: 2025 42
- 53: 1026 3
- 54: 2026 42
- 55: 1027 3
- 56: 2027 42
- 57: 1028 3
- 58: 2028 42
- 59: 1029 3
- 60: 2029 42
- 61: 1030 3
- 62: 2030 42
- 63: 1031 3
- 64: 2031 42
- 65: 1032 3
- 66: 2032 42
- 67: 1033 3
- 68: 2033 42
- 69: 1034 3
- 70: 2034 42
- 71: 1035 3
- 72: 2035 42
- Found 0 values in range
- Counting number of voxels in first frame
- Found 0 voxels in final mask
- Count: 0 0.000000 16777216 0.000000
- mri_binarize done
-
- Started at Sun Oct 8 03:15:45 CEST 2017
- Ended at Sun Oct 8 03:15:52 CEST 2017
- Apas2aseg-Run-Time-Sec 7
-
- apas2aseg Done
- #--------------------------------------------
- #@# ASeg Stats Sun Oct 8 03:15:52 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050116
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050116
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- Computing euler number
- orig.nofix lheno = -158, rheno = -108
- orig.nofix lhholes = 80, rhholes = 55
- Loading mri/aseg.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 50 segmentations
- Computing statistics for each segmentation
- Reporting on 45 segmentations
- Using PrintSegStat
- mri_segstats done
- #-----------------------------------------
- #@# WMParc Sun Oct 8 03:18:06 CEST 2017
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116
- mri_aparc2aseg --s 0050116 --labelwm --hypo-as-wm --rip-unknown --volmask --o mri/wmparc.mgz --ctxseg aparc+aseg.mgz
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- subject 0050116
- outvol mri/wmparc.mgz
- useribbon 0
- baseoffset 0
- labeling wm
- labeling hypo-intensities as wm
- dmaxctx 5.000000
- RipUnknown 1
- CtxSeg /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aparc+aseg.mgz
- Reading lh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading lh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial
- Loading lh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Reading rh white surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading rh pial surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial
- Loading rh annotations from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.aparc.annot
- reading colortable from annotation file...
- colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt)
- Have color table for lh white annotation
- Have color table for rh white annotation
- Loading ribbon segmentation from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/ribbon.mgz
- Loading filled from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/ribbon.mgz
- Ripping vertices labeled as unkown
- Ripped 6864 vertices from left hemi
- Ripped 7651 vertices from right hemi
- Building hash of lh white
- Building hash of lh pial
- Building hash of rh white
- Building hash of rh pial
- Loading aseg from /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aseg.mgz
- Loading Ctx Seg File /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/aparc+aseg.mgz
- ASeg Vox2RAS: -----------
- -1.00000 0.00000 0.00000 128.00000;
- 0.00000 0.00000 1.00000 -128.00000;
- 0.00000 -1.00000 0.00000 128.00000;
- 0.00000 0.00000 0.00000 1.00000;
- -------------------------
- Labeling Slice
- 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
- 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39
- 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59
- 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
- 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99
- 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119
- 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139
- 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159
- 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179
- 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199
- 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219
- 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239
- 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 1074764
- Used brute-force search on 170 voxels
- Fixing Parahip LH WM
- Found 19 clusters
- 0 k 2.000000
- 1 k 1.000000
- 2 k 2.000000
- 3 k 1.000000
- 4 k 1.000000
- 5 k 1762.000000
- 6 k 1.000000
- 7 k 1.000000
- 8 k 1.000000
- 9 k 3.000000
- 10 k 1.000000
- 11 k 1.000000
- 12 k 2.000000
- 13 k 1.000000
- 14 k 34.000000
- 15 k 4.000000
- 16 k 1.000000
- 17 k 1.000000
- 18 k 1.000000
- Fixing Parahip RH WM
- Found 6 clusters
- 0 k 4.000000
- 1 k 1.000000
- 2 k 1.000000
- 3 k 1927.000000
- 4 k 1.000000
- 5 k 3.000000
- Writing output aseg to mri/wmparc.mgz
- mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050116 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- cwd
- cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050116 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- UseRobust 0
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- Loading mri/wmparc.mgz
- Getting Brain Volume Statistics
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- Loading mri/norm.mgz
- Loading mri/norm.mgz
- Voxel Volume is 1 mm^3
- Generating list of segmentation ids
- Found 390 segmentations
- Computing statistics for each segmentation
- Reporting on 70 segmentations
- Using PrintSegStat
- mri_segstats done
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label
- #--------------------------------------------
- #@# BA_exvivo Labels lh Sun Oct 8 03:28:09 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 5572 of (5572 5578 5584 5589 5594) to complete...
- Waiting for PID 5578 of (5572 5578 5584 5589 5594) to complete...
- Waiting for PID 5584 of (5572 5578 5584 5589 5594) to complete...
- Waiting for PID 5589 of (5572 5578 5584 5589 5594) to complete...
- Waiting for PID 5594 of (5572 5578 5584 5589 5594) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4129 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4129 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 598
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.label 4727
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7909 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7909 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 1115
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.label 9024
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA3a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA3a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4077 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4077 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 340
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.label 4417
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA3b_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA3b_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5983 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5983 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 694
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.label 6677
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA4a_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA4a_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5784 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5784 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 710
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.label 6494
- mri_label2label: Done
- PIDs (5572 5578 5584 5589 5594) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 5682 of (5682 5688 5694 5700) to complete...
- Waiting for PID 5688 of (5682 5688 5694 5700) to complete...
- Waiting for PID 5694 of (5682 5688 5694 5700) to complete...
- Waiting for PID 5700 of (5682 5688 5694 5700) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA4p_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA4p_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4070 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4070 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 478
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.label 4548
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA6_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA6_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 13589 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 13589 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 2183
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.label 15772
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA44_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA44_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4181 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4181 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 458
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.label 4639
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label --trgsubject 0050116 --trglabel ./lh.BA45_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA45_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3422 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3422 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 813
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.label 4235
- mri_label2label: Done
- PIDs (5682 5688 5694 5700) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0050116 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0050116 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0050116 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0050116 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0050116 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- Waiting for PID 5790 of (5790 5796 5802 5807 5813) to complete...
- Waiting for PID 5796 of (5790 5796 5802 5807 5813) to complete...
- Waiting for PID 5802 of (5790 5796 5802 5807 5813) to complete...
- Waiting for PID 5807 of (5790 5796 5802 5807 5813) to complete...
- Waiting for PID 5813 of (5790 5796 5802 5807 5813) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label --trgsubject 0050116 --trglabel ./lh.V1_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.V1_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4641 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4641 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 2388
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.label 7029
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label --trgsubject 0050116 --trglabel ./lh.V2_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.V2_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8114 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8114 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 3982
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.label 12096
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label --trgsubject 0050116 --trglabel ./lh.MT_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.MT_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2018 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2018 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 977
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.label 2995
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label --trgsubject 0050116 --trglabel ./lh.entorhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1290 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1290 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 170
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.label 1460
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label --trgsubject 0050116 --trglabel ./lh.perirhinal_exvivo.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1199 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1199 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 212
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.label 1411
- mri_label2label: Done
- PIDs (5790 5796 5802 5807 5813) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 5861 of (5861 5867 5873 5879 5883) to complete...
- Waiting for PID 5867 of (5861 5867 5873 5879 5883) to complete...
- Waiting for PID 5873 of (5861 5867 5873 5879 5883) to complete...
- Waiting for PID 5879 of (5861 5867 5873 5879 5883) to complete...
- Waiting for PID 5883 of (5861 5867 5873 5879 5883) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1014 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1014 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 177
- Checking for and removing duplicates
- Writing label file ./lh.BA1_exvivo.thresh.label 1191
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2092 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2092 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 355
- Checking for and removing duplicates
- Writing label file ./lh.BA2_exvivo.thresh.label 2447
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA3a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1504 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1504 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 55
- Checking for and removing duplicates
- Writing label file ./lh.BA3a_exvivo.thresh.label 1559
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA3b_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1996 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1996 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 290
- Checking for and removing duplicates
- Writing label file ./lh.BA3b_exvivo.thresh.label 2286
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA4a_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2319 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2319 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 389
- Checking for and removing duplicates
- Writing label file ./lh.BA4a_exvivo.thresh.label 2708
- mri_label2label: Done
- PIDs (5861 5867 5873 5879 5883) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 6114 of (6114 6120 6126 6132) to complete...
- Waiting for PID 6120 of (6114 6120 6126 6132) to complete...
- Waiting for PID 6126 of (6114 6120 6126 6132) to complete...
- Waiting for PID 6132 of (6114 6120 6126 6132) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA4p_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1549 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1549 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 176
- Checking for and removing duplicates
- Writing label file ./lh.BA4p_exvivo.thresh.label 1725
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA6_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 7035 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 7035 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 656
- Checking for and removing duplicates
- Writing label file ./lh.BA6_exvivo.thresh.label 7691
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA44_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1912 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 161
- Checking for and removing duplicates
- Writing label file ./lh.BA44_exvivo.thresh.label 2073
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.BA45_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1151 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1151 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 242
- Checking for and removing duplicates
- Writing label file ./lh.BA45_exvivo.thresh.label 1393
- mri_label2label: Done
- PIDs (6114 6120 6126 6132) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- Waiting for PID 6196 of (6196 6202 6208 6214 6220) to complete...
- Waiting for PID 6202 of (6196 6202 6208 6214 6220) to complete...
- Waiting for PID 6208 of (6196 6202 6208 6214 6220) to complete...
- Waiting for PID 6214 of (6196 6202 6208 6214 6220) to complete...
- Waiting for PID 6220 of (6196 6202 6208 6214 6220) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.V1_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3405 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3405 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 1816
- Checking for and removing duplicates
- Writing label file ./lh.V1_exvivo.thresh.label 5221
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.V2_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3334 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3334 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 1804
- Checking for and removing duplicates
- Writing label file ./lh.V2_exvivo.thresh.label 5138
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.MT_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 513 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 513 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 281
- Checking for and removing duplicates
- Writing label file ./lh.MT_exvivo.thresh.label 794
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.entorhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 470 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 470 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 37
- Checking for and removing duplicates
- Writing label file ./lh.entorhinal_exvivo.thresh.label 507
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./lh.perirhinal_exvivo.thresh.label --hemi lh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/lh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./lh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = lh
- trghemi = lh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 450 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 450 nlabel points
- Performing mapping from target back to the source label 159161
- Number of reverse mapping hits = 91
- Checking for and removing duplicates
- Writing label file ./lh.perirhinal_exvivo.thresh.label 541
- mri_label2label: Done
- PIDs (6196 6202 6208 6214 6220) completed and logs appended.
- mris_label2annot --s 0050116 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label
- cmdline mris_label2annot --s 0050116 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.label --l lh.BA2_exvivo.label --l lh.BA3a_exvivo.label --l lh.BA3b_exvivo.label --l lh.BA4a_exvivo.label --l lh.BA4p_exvivo.label --l lh.BA6_exvivo.label --l lh.BA44_exvivo.label --l lh.BA45_exvivo.label --l lh.V1_exvivo.label --l lh.V2_exvivo.label --l lh.MT_exvivo.label --l lh.entorhinal_exvivo.label --l lh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- subject 0050116
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 109949 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.BA_exvivo.annot
- mris_label2annot --s 0050116 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label
- cmdline mris_label2annot --s 0050116 --hemi lh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l lh.BA1_exvivo.thresh.label --l lh.BA2_exvivo.thresh.label --l lh.BA3a_exvivo.thresh.label --l lh.BA3b_exvivo.thresh.label --l lh.BA4a_exvivo.thresh.label --l lh.BA4p_exvivo.thresh.label --l lh.BA6_exvivo.thresh.label --l lh.BA44_exvivo.thresh.label --l lh.BA45_exvivo.thresh.label --l lh.V1_exvivo.thresh.label --l lh.V2_exvivo.thresh.label --l lh.MT_exvivo.thresh.label --l lh.entorhinal_exvivo.thresh.label --l lh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- subject 0050116
- hemi lh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 130935 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/lh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.stats -b -a ./lh.BA_exvivo.annot -c ./BA_exvivo.ctab 0050116 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1445 870 3327 2.752 0.534 0.133 0.039 21 2.0 BA1_exvivo
- 5244 3455 9018 2.560 0.472 0.105 0.024 43 4.7 BA2_exvivo
- 1208 814 1240 1.948 0.405 0.132 0.037 10 1.7 BA3a_exvivo
- 3049 1998 4892 2.201 0.736 0.115 0.029 30 3.3 BA3b_exvivo
- 2062 1119 3819 2.945 0.464 0.103 0.060 34 6.5 BA4a_exvivo
- 1665 1008 2386 2.514 0.505 0.109 0.040 20 3.0 BA4p_exvivo
- 10658 7096 25281 2.964 0.584 0.118 0.034 116 15.5 BA6_exvivo
- 2473 1650 5511 2.970 0.549 0.110 0.029 29 3.1 BA44_exvivo
- 3119 2123 6158 2.574 0.498 0.114 0.027 39 3.0 BA45_exvivo
- 4541 3035 4591 1.639 0.457 0.146 0.041 64 7.5 V1_exvivo
- 9420 6111 12662 1.993 0.574 0.148 0.045 160 16.2 V2_exvivo
- 2831 1797 4703 2.449 0.512 0.125 0.035 36 3.9 MT_exvivo
- 647 450 1910 3.434 0.753 0.097 0.025 4 0.6 perirhinal_exvivo
- 850 599 2688 3.374 0.671 0.158 0.056 16 2.1 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/lh.BA_exvivo.thresh.stats -b -a ./lh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0050116 lh white
- computing statistics for each annotation in ./lh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/lh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 309701
- Total vertex volume 306142 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 988 570 2215 2.742 0.561 0.136 0.044 16 1.5 BA1_exvivo
- 2076 1326 3859 2.582 0.442 0.095 0.021 15 1.6 BA2_exvivo
- 992 673 971 1.880 0.375 0.131 0.035 8 1.3 BA3a_exvivo
- 1884 1253 2428 1.861 0.411 0.105 0.023 13 1.8 BA3b_exvivo
- 2018 1121 3694 2.918 0.481 0.102 0.059 32 6.4 BA4a_exvivo
- 1303 814 1897 2.440 0.482 0.109 0.040 16 2.2 BA4p_exvivo
- 5255 3452 12280 2.947 0.582 0.119 0.038 56 8.3 BA6_exvivo
- 1474 987 3179 2.855 0.597 0.120 0.038 24 2.3 BA44_exvivo
- 1168 784 2368 2.510 0.509 0.120 0.032 16 1.4 BA45_exvivo
- 4780 3212 4972 1.649 0.455 0.145 0.041 66 8.2 V1_exvivo
- 4754 3068 5833 1.875 0.546 0.157 0.050 88 9.3 V2_exvivo
- 777 493 1414 2.708 0.589 0.146 0.047 13 1.5 MT_exvivo
- 306 223 825 3.244 0.652 0.103 0.022 2 0.3 perirhinal_exvivo
- 451 305 1216 3.214 0.801 0.149 0.052 9 0.9 entorhinal_exvivo
- #--------------------------------------------
- #@# BA_exvivo Labels rh Sun Oct 8 03:31:33 CEST 2017
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 6388 of (6388 6394 6400 6406 6409) to complete...
- Waiting for PID 6394 of (6388 6394 6400 6406 6409) to complete...
- Waiting for PID 6400 of (6388 6394 6400 6406 6409) to complete...
- Waiting for PID 6406 of (6388 6394 6400 6406 6409) to complete...
- Waiting for PID 6409 of (6388 6394 6400 6406 6409) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3962 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3962 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 666
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.label 4628
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6687 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6687 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 900
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.label 7587
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA3a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3980 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3980 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 515
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.label 4495
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA3b_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4522 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4522 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 657
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.label 5179
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA4a_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5747 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5747 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 1136
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.label 6883
- mri_label2label: Done
- PIDs (6388 6394 6400 6406 6409) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 6481 of (6481 6487 6493 6499) to complete...
- Waiting for PID 6487 of (6481 6487 6493 6499) to complete...
- Waiting for PID 6493 of (6481 6487 6493 6499) to complete...
- Waiting for PID 6499 of (6481 6487 6493 6499) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA4p_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4473 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4473 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 878
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.label 5351
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA6_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 12256 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 12256 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 2040
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.label 14296
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA44_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6912 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6912 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 703
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.label 7615
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label --trgsubject 0050116 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA45_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 5355 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 5355 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 850
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.label 6205
- mri_label2label: Done
- PIDs (6481 6487 6493 6499) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0050116 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0050116 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0050116 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0050116 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0050116 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- Waiting for PID 6568 of (6568 6574 6580 6586 6592) to complete...
- Waiting for PID 6574 of (6568 6574 6580 6586 6592) to complete...
- Waiting for PID 6580 of (6568 6574 6580 6586 6592) to complete...
- Waiting for PID 6586 of (6568 6574 6580 6586 6592) to complete...
- Waiting for PID 6592 of (6568 6574 6580 6586 6592) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label --trgsubject 0050116 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.V1_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 4727 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 4727 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 3243
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.label 7970
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label --trgsubject 0050116 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.V2_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 8016 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 8016 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 5352
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.label 13368
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label --trgsubject 0050116 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.MT_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1932 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1932 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 963
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.label 2895
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject 0050116 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.entorhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1038 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1038 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 94
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.label 1132
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject 0050116 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.perirhinal_exvivo.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 752 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 752 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 86
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.label 838
- mri_label2label: Done
- PIDs (6568 6574 6580 6586 6592) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 6653 of (6653 6659 6665 6671 6674) to complete...
- Waiting for PID 6659 of (6653 6659 6665 6671 6674) to complete...
- Waiting for PID 6665 of (6653 6659 6665 6671 6674) to complete...
- Waiting for PID 6671 of (6653 6659 6665 6671 6674) to complete...
- Waiting for PID 6674 of (6653 6659 6665 6671 6674) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 876 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 876 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 206
- Checking for and removing duplicates
- Writing label file ./rh.BA1_exvivo.thresh.label 1082
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2688 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2688 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 336
- Checking for and removing duplicates
- Writing label file ./rh.BA2_exvivo.thresh.label 3024
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA3a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1698 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1698 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 110
- Checking for and removing duplicates
- Writing label file ./rh.BA3a_exvivo.thresh.label 1808
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA3b_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA3b_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 2183 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 2183 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 381
- Checking for and removing duplicates
- Writing label file ./rh.BA3b_exvivo.thresh.label 2564
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4a_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA4a_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1388 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1388 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 338
- Checking for and removing duplicates
- Writing label file ./rh.BA4a_exvivo.thresh.label 1726
- mri_label2label: Done
- PIDs (6653 6659 6665 6671 6674) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 6723 of (6723 6729 6735 6740) to complete...
- Waiting for PID 6729 of (6723 6729 6735 6740) to complete...
- Waiting for PID 6735 of (6723 6729 6735 6740) to complete...
- Waiting for PID 6740 of (6723 6729 6735 6740) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA4p_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA4p_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1489 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1489 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 371
- Checking for and removing duplicates
- Writing label file ./rh.BA4p_exvivo.thresh.label 1860
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA6_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA6_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 6959 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 6959 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 940
- Checking for and removing duplicates
- Writing label file ./rh.BA6_exvivo.thresh.label 7899
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA44_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA44_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1012 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1012 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 72
- Checking for and removing duplicates
- Writing label file ./rh.BA44_exvivo.thresh.label 1084
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.BA45_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.BA45_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 1178 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 1178 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 91
- Checking for and removing duplicates
- Writing label file ./rh.BA45_exvivo.thresh.label 1269
- mri_label2label: Done
- PIDs (6723 6729 6735 6740) completed and logs appended.
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- Waiting for PID 6785 of (6785 6791 6797 6803 6809) to complete...
- Waiting for PID 6791 of (6785 6791 6797 6803 6809) to complete...
- Waiting for PID 6797 of (6785 6791 6797 6803 6809) to complete...
- Waiting for PID 6803 of (6785 6791 6797 6803 6809) to complete...
- Waiting for PID 6809 of (6785 6791 6797 6803 6809) to complete...
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V1_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.V1_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3232 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3232 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 2279
- Checking for and removing duplicates
- Writing label file ./rh.V1_exvivo.thresh.label 5511
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.V2_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.V2_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 3437 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 3437 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 2433
- Checking for and removing duplicates
- Writing label file ./rh.V2_exvivo.thresh.label 5870
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.MT_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.MT_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 268 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 268 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 127
- Checking for and removing duplicates
- Writing label file ./rh.MT_exvivo.thresh.label 395
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.entorhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.entorhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 694 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 694 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 49
- Checking for and removing duplicates
- Writing label file ./rh.entorhinal_exvivo.thresh.label 743
- mri_label2label: Done
- mri_label2label --srcsubject fsaverage --srclabel /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject 0050116 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface
- srclabel = /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/label/rh.perirhinal_exvivo.thresh.label
- srcsubject = fsaverage
- trgsubject = 0050116
- trglabel = ./rh.perirhinal_exvivo.thresh.label
- regmethod = surface
- srchemi = rh
- trghemi = rh
- trgsurface = white
- srcsurfreg = sphere.reg
- trgsurfreg = sphere.reg
- usehash = 1
- Use ProjAbs = 0, 0
- Use ProjFrac = 0, 0
- DoPaint 0
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- FREESURFER_HOME /pasteur/homes/ntraut/bin/freesurfer-6.0.0
- Loading source label.
- Found 291 points in source label.
- Starting surface-based mapping
- Reading source registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/fsaverage/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Reading target surface
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white
- Reading target registration
- /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.sphere.reg
- Rescaling ... original radius = 100
- Building target registration hash (res=16).
- Building source registration hash (res=16).
- INFO: found 291 nlabel points
- Performing mapping from target back to the source label 160959
- Number of reverse mapping hits = 36
- Checking for and removing duplicates
- Writing label file ./rh.perirhinal_exvivo.thresh.label 327
- mri_label2label: Done
- PIDs (6785 6791 6797 6803 6809) completed and logs appended.
- mris_label2annot --s 0050116 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label
- cmdline mris_label2annot --s 0050116 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- subject 0050116
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 110179 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.BA_exvivo.annot
- mris_label2annot --s 0050116 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- Reading ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- Number of ctab entries 15
- $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $
- cwd /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label
- cmdline mris_label2annot --s 0050116 --hemi rh --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose
- sysname Linux
- hostname tars-925
- machine x86_64
- user ntraut
- subject 0050116
- hemi rh
- SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt
- AnnotName BA_exvivo.thresh
- nlables 14
- LabelThresh 0 0.000000
- Loading /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.orig
- 1 1530880 BA1_exvivo
- 2 16749699 BA2_exvivo
- 3 16711680 BA3a_exvivo
- 4 3368703 BA3b_exvivo
- 5 1376196 BA4a_exvivo
- 6 13382655 BA4p_exvivo
- 7 10036737 BA6_exvivo
- 8 2490521 BA44_exvivo
- 9 39283 BA45_exvivo
- 10 3993 V1_exvivo
- 11 8508928 V2_exvivo
- 12 10027163 MT_exvivo
- 13 16422433 perirhinal_exvivo
- 14 16392598 entorhinal_exvivo
- Mapping unhit to unknown
- Found 131916 unhit vertices
- Writing annot to /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/label/rh.BA_exvivo.thresh.annot
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab 0050116 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 1233 714 2848 2.717 0.586 0.138 0.041 20 1.9 BA1_exvivo
- 3906 2553 6672 2.484 0.526 0.104 0.024 29 3.5 BA2_exvivo
- 1398 952 1459 2.018 0.509 0.124 0.030 11 1.4 BA3a_exvivo
- 2554 1694 3510 1.914 0.564 0.114 0.034 29 3.4 BA3b_exvivo
- 2286 1234 3899 2.760 0.461 0.104 0.039 24 3.2 BA4a_exvivo
- 1878 1139 2716 2.552 0.550 0.123 0.042 23 3.4 BA4p_exvivo
- 9982 6752 23976 2.955 0.570 0.121 0.033 112 12.3 BA6_exvivo
- 3579 2434 7785 2.932 0.434 0.110 0.025 38 3.1 BA44_exvivo
- 4083 2755 8698 2.692 0.512 0.124 0.029 49 4.7 BA45_exvivo
- 5471 3589 5667 1.589 0.455 0.146 0.047 79 10.7 V1_exvivo
- 10642 6804 15092 2.022 0.598 0.141 0.042 161 17.4 V2_exvivo
- 2771 1832 4682 2.449 0.440 0.128 0.029 36 3.3 MT_exvivo
- 585 439 2139 3.432 0.670 0.102 0.028 4 0.7 perirhinal_exvivo
- 412 295 1157 3.126 0.683 0.140 0.049 5 0.6 entorhinal_exvivo
- mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab 0050116 rh white
- computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot.
- reading volume /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/mri/wm.mgz...
- reading input surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- reading input pial surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.pial...
- reading input white surface /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050116/surf/rh.white...
- INFO: using TH3 volume calc
- INFO: assuming MGZ format for volumes.
- Using TH3 vertex volume calc
- Total face volume 307497
- Total vertex volume 303707 (mask=0)
- reading colortable from annotation file...
- colortable with 15 entries read (originally /pasteur/homes/ntraut/bin/freesurfer-6.0.0/average/colortable_BA.txt)
- Saving annotation colortable ./BA_exvivo.thresh.ctab
- table columns are:
- number of vertices
- total surface area (mm^2)
- total gray matter volume (mm^3)
- average cortical thickness +- standard deviation (mm)
- integrated rectified mean curvature
- integrated rectified Gaussian curvature
- folding index
- intrinsic curvature index
- structure name
- atlas_icv (eTIV) = 1625203 mm^3 (det: 1.198685 )
- lhCtxGM: 304001.958 303034.000 diff= 968.0 pctdiff= 0.318
- rhCtxGM: 301086.028 300359.000 diff= 727.0 pctdiff= 0.241
- lhCtxWM: 236131.179 237381.000 diff=-1249.8 pctdiff=-0.529
- rhCtxWM: 236076.731 237206.000 diff=-1129.3 pctdiff=-0.478
- SubCortGMVol 65633.000
- SupraTentVol 1159328.896 (1155680.000) diff=3648.896 pctdiff=0.315
- SupraTentVolNotVent 1147309.896 (1143661.000) diff=3648.896 pctdiff=0.318
- BrainSegVol 1330132.000 (1328372.000) diff=1760.000 pctdiff=0.132
- BrainSegVolNotVent 1315604.000 (1314848.896) diff=755.104 pctdiff=0.057
- BrainSegVolNotVent 1315604.000
- CerebellumVol 171872.000
- VentChorVol 12019.000
- 3rd4th5thCSF 2509.000
- CSFVol 749.000, OptChiasmVol 71.000
- MaskVol 1749329.000
- 879 505 1907 2.647 0.640 0.133 0.044 14 1.4 BA1_exvivo
- 2272 1471 4245 2.558 0.509 0.100 0.025 17 2.0 BA2_exvivo
- 1244 853 1196 1.959 0.438 0.130 0.030 10 1.4 BA3a_exvivo
- 2084 1398 2494 1.796 0.455 0.110 0.030 21 2.5 BA3b_exvivo
- 1376 717 2441 2.800 0.474 0.111 0.049 20 2.4 BA4a_exvivo
- 1564 975 2203 2.501 0.592 0.123 0.041 18 2.8 BA4p_exvivo
- 6251 4233 15243 2.962 0.564 0.123 0.033 68 7.6 BA6_exvivo
- 773 533 1902 2.925 0.420 0.108 0.021 9 0.6 BA44_exvivo
- 872 598 2249 2.930 0.361 0.133 0.033 10 1.1 BA45_exvivo
- 5198 3405 5245 1.579 0.450 0.145 0.047 72 10.1 V1_exvivo
- 5549 3604 7202 1.865 0.529 0.149 0.047 93 10.3 V2_exvivo
- 382 254 603 2.350 0.297 0.136 0.029 5 0.5 MT_exvivo
- 334 248 1273 3.535 0.635 0.083 0.016 1 0.2 perirhinal_exvivo
- 265 205 683 3.228 0.688 0.135 0.031 2 0.3 entorhinal_exvivo
- Started at Sat Oct 7 18:04:56 CEST 2017
- Ended at Sun Oct 8 03:34:58 CEST 2017
- #@#%# recon-all-run-time-hours 9.501
- recon-all -s 0050116 finished without error at Sun Oct 8 03:34:58 CEST 2017
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