reference-preprocessing
/
ABIDE_fs-6.0.0


			
			
				
					
						
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							/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050040/mri
/pasteur/homes/ntraut/bin/freesurfer-6.0.0/bin/mri_nu_correct.mni
--no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50
nIters 1
$Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
Linux tars-579 2.6.32-696.3.2.el6.x86_64 #1 SMP Tue Jun 20 01:26:55 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux
Sat Oct  7 18:23:24 CEST 2017
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
tmpdir is ./tmp.mri_nu_correct.mni.16458
/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050040/mri
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.16458/nu0.mnc -odt float
mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.16458/nu0.mnc -odt float 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from orig.mgz...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
changing data type from uchar to float (noscale = 0)...
writing to ./tmp.mri_nu_correct.mni.16458/nu0.mnc...
 
--------------------------------------------------------
Iteration 1 Sat Oct  7 18:23:26 CEST 2017
nu_correct -clobber ./tmp.mri_nu_correct.mni.16458/nu0.mnc ./tmp.mri_nu_correct.mni.16458/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.16458/0/ -iterations 1000 -distance 50
[ntraut@tars-579:/pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0/0050040/mri/] [2017-10-07 18:23:26] running:
  /pasteur/homes/ntraut/bin/freesurfer-6.0.0/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.16458/0/ ./tmp.mri_nu_correct.mni.16458/nu0.mnc ./tmp.mri_nu_correct.mni.16458/nu1.imp

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Number of iterations: 79 
CV of field change: 0.000991599
 
 
 
mri_convert ./tmp.mri_nu_correct.mni.16458/nu1.mnc orig_nu.mgz --like orig.mgz --conform
mri_convert.bin ./tmp.mri_nu_correct.mni.16458/nu1.mnc orig_nu.mgz --like orig.mgz --conform 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from ./tmp.mri_nu_correct.mni.16458/nu1.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
INFO: transform src into the like-volume: orig.mgz
changing data type from float to uchar (noscale = 0)...
MRIchangeType: Building histogram 
writing to orig_nu.mgz...
 
 
Sat Oct  7 18:25:00 CEST 2017
mri_nu_correct.mni done