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0050033
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050033 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-570
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050033
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1242656.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1234207.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1234362.544761, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 5867.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 271431.571052, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 271213.877233, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 542645.448285, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 242724.087092, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 243236.009384, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 485960.096476, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 60319.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 719591.448285, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1098528.544761, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1092661.544761, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1088685.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1680990.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.788007, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.065968, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 91, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 85, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 176, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1576961.509088, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 04:06:16 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 18:52:00 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 18:52:00 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      2401     2794.8  Left-Lateral-Ventricle            42.7110    13.9799    14.0000    87.0000    73.0000 
    82. 

  82.   2   5       280      317.7  Left-Inf-Lat-Vent                 39.2500    12.7525     9.0000    68.0000    59.0000 
    83. 

  83.   3   7     14095    14502.7  Left-Cerebellum-White-Matter      82.9469     7.6336    32.0000   105.0000    73.0000 
    84. 

  84.   4   8     57395    57428.1  Left-Cerebellum-Cortex            60.0210     9.3151     9.0000   115.0000   106.0000 
    85. 

  85.   5  10      8062     7799.9  Left-Thalamus-Proper              85.4092     8.3799    41.0000   106.0000    65.0000 
    86. 

  86.   6  11      3505     3389.5  Left-Caudate                      76.8014     7.0187    49.0000   100.0000    51.0000 
    87. 

  87.   7  12      4984     5052.8  Left-Putamen                      83.4294     5.2438    53.0000   102.0000    49.0000 
    88. 

  88.   8  13      2354     2208.8  Left-Pallidum                     92.1164     4.8886    66.0000   107.0000    41.0000 
    89. 

  89.   9  14       759      794.3  3rd-Ventricle                     42.5652    14.0828     1.0000    82.0000    81.0000 
    90. 

  90.  10  15      1050     1229.4  4th-Ventricle                     33.3743    11.7700     8.0000    68.0000    60.0000 
    91. 

  91.  11  16     21910    21377.2  Brain-Stem                        83.1638    11.3817    16.0000   154.0000   138.0000 
    92. 

  92.  12  17      4836     4737.9  Left-Hippocampus                  64.4719    10.4059    12.0000   107.0000    95.0000 
    93. 

  93.  13  18      1424     1321.7  Left-Amygdala                     64.7711     7.6329    31.0000    93.0000    62.0000 
    94. 

  94.  14  24       773      777.5  CSF                               50.2147    11.6953    24.0000    81.0000    57.0000 
    95. 

  95.  15  26       511      536.2  Left-Accumbens-area               75.4286     5.2429    49.0000   108.0000    59.0000 
    96. 

  96.  16  28      4514     4292.5  Left-VentralDC                    85.4256    11.3677    23.0000   111.0000    88.0000 
    97. 

  97.  17  30         6       11.7  Left-vessel                       62.8333     3.3116    60.0000    69.0000     9.0000 
    98. 

  98.  18  31       361      362.0  Left-choroid-plexus               58.8393    10.0685    30.0000    82.0000    52.0000 
    99. 

  99.  19  43      2324     2689.4  Right-Lateral-Ventricle           43.2367    15.2452    10.0000    97.0000    87.0000 
    100. 

  100.  20  44       238      282.5  Right-Inf-Lat-Vent                42.8571    13.2921    15.0000    75.0000    60.0000 
    101. 

  101.  21  46     14707    14992.3  Right-Cerebellum-White-Matter     81.8773     7.8475    38.0000   119.0000    81.0000 
    102. 

  102.  22  47     56793    56971.4  Right-Cerebellum-Cortex           59.1340     9.4111    16.0000   134.0000   118.0000 
    103. 

  103.  23  49      8155     7800.1  Right-Thalamus-Proper             82.7267     8.1320    38.0000    99.0000    61.0000 
    104. 

  104.  24  50      3563     3578.1  Right-Caudate                     74.8266     6.5483    46.0000    94.0000    48.0000 
    105. 

  105.  25  51      5713     5587.9  Right-Putamen                     81.5374     5.6743    57.0000    99.0000    42.0000 
    106. 

  106.  26  52      2059     1970.9  Right-Pallidum                    92.5396     3.9958    65.0000   105.0000    40.0000 
    107. 

  107.  27  53      4368     4288.6  Right-Hippocampus                 66.3711     7.9982    35.0000   108.0000    73.0000 
    108. 

  108.  28  54      1658     1575.7  Right-Amygdala                    62.3987     7.8737    36.0000    90.0000    54.0000 
    109. 

  109.  29  58       606      604.7  Right-Accumbens-area              76.1370     5.4417    53.0000   108.0000    55.0000 
    110. 

  110.  30  60      4078     3794.3  Right-VentralDC                   83.1582    11.8700    24.0000   110.0000    86.0000 
    111. 

  111.  31  62         3        5.4  Right-vessel                      60.6667     6.1101    54.0000    66.0000    12.0000 
    112. 

  112.  32  63       299      316.6  Right-choroid-plexus              59.5518    10.8702    31.0000    82.0000    51.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1446     1428.6  WM-hypointensities                70.3651    10.1906    35.0000   111.0000    76.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       112      142.5  Optic-Chiasm                      75.7679    14.6484    38.0000   107.0000    69.0000 
    121. 

  121.  41 251       927      828.4  CC_Posterior                      92.4337    15.8163    41.0000   113.0000    72.0000 
    122. 

  122.  42 252       593      517.2  CC_Mid_Posterior                  91.5683    11.9065    50.0000   110.0000    60.0000 
    123. 

  123.  43 253       842      759.4  CC_Central                        89.8017    13.8932    46.0000   110.0000    64.0000 
    124. 

  124.  44 254       972      877.7  CC_Mid_Anterior                   95.7068    15.2751    42.0000   122.0000    80.0000 
    125. 

  125.  45 255       941      910.1  CC_Anterior                      104.3273    14.5520    32.0000   125.0000    93.0000 
    126.