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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050008 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-584
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050008
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 19406.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 252693.227518, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 248821.719823, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 501514.947341, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1791794.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1558102.769301, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 03:19:10 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 18:42:28 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 18:42:28 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3646     3642.1  wm-lh-bankssts                   101.0494     7.0339    77.0000   117.0000    40.0000 
    66. 

  66.   2 3002      3010     2940.3  wm-lh-caudalanteriorcingulate    101.7588     8.2084    49.0000   115.0000    66.0000 
    67. 

  67.   3 3003      6962     6978.0  wm-lh-caudalmiddlefrontal         99.2917     6.5265    76.0000   112.0000    36.0000 
    68. 

  68.   4 3005      3101     3095.1  wm-lh-cuneus                      94.6495     7.7888    71.0000   115.0000    44.0000 
    69. 

  69.   5 3006       985     1035.6  wm-lh-entorhinal                  85.8447     7.1244    45.0000   110.0000    65.0000 
    70. 

  70.   6 3007      6851     6832.9  wm-lh-fusiform                    91.8402     8.1776    44.0000   110.0000    66.0000 
    71. 

  71.   7 3008     10929    11038.9  wm-lh-inferiorparietal           100.4966     7.4975    76.0000   118.0000    42.0000 
    72. 

  72.   8 3009      7288     7302.6  wm-lh-inferiortemporal            91.1586     8.7650    68.0000   111.0000    43.0000 
    73. 

  73.   9 3010      3879     3879.9  wm-lh-isthmuscingulate           100.4800     7.4735    40.0000   115.0000    75.0000 
    74. 

  74.  10 3011     11016    11287.4  wm-lh-lateraloccipital            91.6382     9.3587    66.0000   115.0000    49.0000 
    75. 

  75.  11 3012      7401     7443.9  wm-lh-lateralorbitofrontal       101.2046     7.4394    72.0000   123.0000    51.0000 
    76. 

  76.  12 3013      6694     6706.5  wm-lh-lingual                     89.4655     9.0372    57.0000   120.0000    63.0000 
    77. 

  77.  13 3014      4011     3953.4  wm-lh-medialorbitofrontal         99.0112     8.9804    72.0000   115.0000    43.0000 
    78. 

  78.  14 3015      6127     6400.0  wm-lh-middletemporal              95.4116     7.5590    73.0000   114.0000    41.0000 
    79. 

  79.  15 3016      1634     1688.1  wm-lh-parahippocampal             93.1830     7.4889    68.0000   116.0000    48.0000 
    80. 

  80.  16 3017      4522     4538.3  wm-lh-paracentral                 97.6353     5.7574    79.0000   110.0000    31.0000 
    81. 

  81.  17 3018      3624     3634.6  wm-lh-parsopercularis             99.5706     6.6869    81.0000   112.0000    31.0000 
    82. 

  82.  18 3019      1030     1083.7  wm-lh-parsorbitalis               98.0485     6.9864    81.0000   115.0000    34.0000 
    83. 

  83.  19 3020      3390     3390.6  wm-lh-parstriangularis           100.2885     6.7049    79.0000   113.0000    34.0000 
    84. 

  84.  20 3021      4761     4552.2  wm-lh-pericalcarine               91.1609     9.5033    23.0000   115.0000    92.0000 
    85. 

  85.  21 3022      7003     7175.2  wm-lh-postcentral                 97.1711     6.8196    76.0000   114.0000    38.0000 
    86. 

  86.  22 3023      4968     4873.1  wm-lh-posteriorcingulate          99.5558     8.1085    45.0000   113.0000    68.0000 
    87. 

  87.  23 3024     14182    14301.8  wm-lh-precentral                  97.9882     6.1407    76.0000   113.0000    37.0000 
    88. 

  88.  24 3025      9133     9084.6  wm-lh-precuneus                   98.7318     7.6693    26.0000   116.0000    90.0000 
    89. 

  89.  25 3026      2966     2818.0  wm-lh-rostralanteriorcingulate    98.1615    10.0803    54.0000   115.0000    61.0000 
    90. 

  90.  26 3027     13717    13807.5  wm-lh-rostralmiddlefrontal        98.4815     8.1407    72.0000   117.0000    45.0000 
    91. 

  91.  27 3028     21434    21517.8  wm-lh-superiorfrontal             96.0498     7.3699    44.0000   111.0000    67.0000 
    92. 

  92.  28 3029     14114    14348.6  wm-lh-superiorparietal            99.1364     7.1490    77.0000   115.0000    38.0000 
    93. 

  93.  29 3030      6841     6966.4  wm-lh-superiortemporal            96.9167     7.8631    72.0000   114.0000    42.0000 
    94. 

  94.  30 3031      8181     8346.0  wm-lh-supramarginal              102.3058     7.1953    77.0000   119.0000    42.0000 
    95. 

  95.  31 3032       328      322.4  wm-lh-frontalpole                 91.3567     7.5875    75.0000   110.0000    35.0000 
    96. 

  96.  32 3033       812      862.9  wm-lh-temporalpole                84.2402     6.8227    67.0000   100.0000    33.0000 
    97. 

  97.  33 3034       994      926.9  wm-lh-transversetemporal          98.8451     8.3617    72.0000   123.0000    51.0000 
    98. 

  98.  34 3035     10639    10478.7  wm-lh-insula                      95.3536     8.6169    29.0000   117.0000    88.0000 
    99. 

  99.  35 4001      3486     3457.6  wm-rh-bankssts                   102.1845     5.7062    81.0000   118.0000    37.0000 
    100. 

  100.  36 4002      2810     2809.3  wm-rh-caudalanteriorcingulate    103.0409     8.7184    50.0000   116.0000    66.0000 
    101. 

  101.  37 4003      7003     7001.0  wm-rh-caudalmiddlefrontal         97.8978     6.4088    77.0000   110.0000    33.0000 
    102. 

  102.  38 4005      3062     3102.6  wm-rh-cuneus                      93.9455     7.2943    74.0000   119.0000    45.0000 
    103. 

  103.  39 4006       984     1008.5  wm-rh-entorhinal                  86.6423     6.9385    68.0000   104.0000    36.0000 
    104. 

  104.  40 4007      7264     7267.8  wm-rh-fusiform                    91.7823     7.8304    68.0000   111.0000    43.0000 
    105. 

  105.  41 4008      9351     9510.3  wm-rh-inferiorparietal           101.1922     7.3277    78.0000   122.0000    44.0000 
    106. 

  106.  42 4009      7577     7772.1  wm-rh-inferiortemporal            95.3769     8.9002    71.0000   125.0000    54.0000 
    107. 

  107.  43 4010      3668     3699.3  wm-rh-isthmuscingulate           100.7287     6.2619    47.0000   115.0000    68.0000 
    108. 

  108.  44 4011     10302    10469.7  wm-rh-lateraloccipital            93.8854     8.8823    66.0000   115.0000    49.0000 
    109. 

  109.  45 4012      7050     6983.4  wm-rh-lateralorbitofrontal        97.1221     8.0005    73.0000   113.0000    40.0000 
    110. 

  110.  46 4013      6636     6590.4  wm-rh-lingual                     90.4843     8.9826    33.0000   117.0000    84.0000 
    111. 

  111.  47 4014      4553     4565.6  wm-rh-medialorbitofrontal         96.6497     9.9706    19.0000   114.0000    95.0000 
    112. 

  112.  48 4015      6332     6514.2  wm-rh-middletemporal              95.9599     8.4716    71.0000   114.0000    43.0000 
    113. 

  113.  49 4016      1823     1879.2  wm-rh-parahippocampal             92.2052     7.3795    52.0000   111.0000    59.0000 
    114. 

  114.  50 4017      5205     5168.0  wm-rh-paracentral                 96.2957     6.6022    72.0000   111.0000    39.0000 
    115. 

  115.  51 4018      3048     3049.5  wm-rh-parsopercularis             98.0466     6.4174    79.0000   112.0000    33.0000 
    116. 

  116.  52 4019      1118     1179.2  wm-rh-parsorbitalis               95.9043     7.3115    79.0000   114.0000    35.0000 
    117. 

  117.  53 4020      4085     4062.8  wm-rh-parstriangularis            98.7354     6.7630    78.0000   114.0000    36.0000 
    118. 

  118.  54 4021      4438     4154.7  wm-rh-pericalcarine               90.9973     8.6058    20.0000   112.0000    92.0000 
    119. 

  119.  55 4022      8199     8409.3  wm-rh-postcentral                 96.7669     7.3017    75.0000   115.0000    40.0000 
    120. 

  120.  56 4023      4452     4469.6  wm-rh-posteriorcingulate          99.5436     7.2146    50.0000   114.0000    64.0000 
    121. 

  121.  57 4024     14451    14663.2  wm-rh-precentral                  97.0653     5.9926    74.0000   114.0000    40.0000 
    122. 

  122.  58 4025      9783     9721.0  wm-rh-precuneus                   97.8301     7.2698    64.0000   112.0000    48.0000 
    123. 

  123.  59 4026      2223     2178.7  wm-rh-rostralanteriorcingulate   100.3207     7.8239    67.0000   114.0000    47.0000 
    124. 

  124.  60 4027     11693    11850.6  wm-rh-rostralmiddlefrontal        99.2207     7.5610    74.0000   114.0000    40.0000 
    125. 

  125.  61 4028     21303    21459.1  wm-rh-superiorfrontal             96.8260     7.2137    74.0000   114.0000    40.0000 
    126. 

  126.  62 4029     13709    13857.5  wm-rh-superiorparietal            98.9270     7.0532    76.0000   114.0000    38.0000 
    127. 

  127.  63 4030      6027     6213.0  wm-rh-superiortemporal            97.9265     8.1487    72.0000   118.0000    46.0000 
    128. 

  128.  64 4031     10256    10362.8  wm-rh-supramarginal              102.9402     6.3835    80.0000   117.0000    37.0000 
    129. 

  129.  65 4032       331      341.5  wm-rh-frontalpole                 92.7644     7.3850    77.0000   112.0000    35.0000 
    130. 

  130.  66 4033       679      719.4  wm-rh-temporalpole                84.8557     6.8302    71.0000   104.0000    33.0000 
    131. 

  131.  67 4034       612      580.0  wm-rh-transversetemporal          96.4346     6.8077    79.0000   110.0000    31.0000 
    132. 

  132.  68 4035     11094    10777.9  wm-rh-insula                      93.8097     8.1693    35.0000   118.0000    83.0000 
    133. 

  133.  69 5001     34736    34839.9  Left-UnsegmentedWhiteMatter      100.8689     8.3064    29.0000   122.0000    93.0000 
    134. 

  134.  70 5002     33080    33245.5  Right-UnsegmentedWhiteMatter      99.5943     8.3605    24.0000   118.0000    94.0000 
    135.