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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051280
- # sysname Linux
- # hostname tars-538
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051280
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1190806.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1168020.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1168535.360362, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 19004.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 296278.054019, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 303052.552656, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 599330.606675, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 188090.462571, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 189971.291115, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 378061.753686, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 59139.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 767462.606675, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1058367.360362, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1039363.360362, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1035951.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1563910.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.821529, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.078930, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 55, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 55, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 110, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1449500.492759, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 07:05:48
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 00:01:30
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 00:01:30
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7282 7547.9 Left-Lateral-Ventricle 21.1721 13.4839 0.0000 78.0000 78.0000
- 2 5 592 619.1 Left-Inf-Lat-Vent 29.3226 15.5015 1.0000 77.0000 76.0000
- 3 7 11611 11949.5 Left-Cerebellum-White-Matter 79.1304 8.7833 31.0000 104.0000 73.0000
- 4 8 53824 54010.7 Left-Cerebellum-Cortex 51.6529 11.0290 0.0000 106.0000 106.0000
- 5 10 7726 7537.1 Left-Thalamus-Proper 77.8100 10.6833 29.0000 107.0000 78.0000
- 6 11 4634 4630.1 Left-Caudate 67.0017 8.0482 32.0000 96.0000 64.0000
- 7 12 5344 5314.6 Left-Putamen 71.4255 7.0978 37.0000 104.0000 67.0000
- 8 13 1944 1860.4 Left-Pallidum 88.2598 6.5357 58.0000 109.0000 51.0000
- 9 14 1471 1504.6 3rd-Ventricle 22.6377 13.0345 0.0000 67.0000 67.0000
- 10 15 1377 1465.0 4th-Ventricle 22.0370 12.9117 0.0000 75.0000 75.0000
- 11 16 16392 16606.5 Brain-Stem 76.0806 9.9210 12.0000 115.0000 103.0000
- 12 17 4101 3884.2 Left-Hippocampus 56.1495 11.5659 0.0000 105.0000 105.0000
- 13 18 1539 1467.3 Left-Amygdala 56.1176 9.4659 2.0000 94.0000 92.0000
- 14 24 934 910.3 CSF 33.9593 14.0324 0.0000 71.0000 71.0000
- 15 26 769 752.3 Left-Accumbens-area 62.1547 6.4253 29.0000 80.0000 51.0000
- 16 28 3884 3756.9 Left-VentralDC 81.8417 12.8172 18.0000 122.0000 104.0000
- 17 30 27 37.7 Left-vessel 52.5556 8.9886 30.0000 68.0000 38.0000
- 18 31 430 359.7 Left-choroid-plexus 50.4605 13.9022 8.0000 89.0000 81.0000
- 19 43 9611 9961.8 Right-Lateral-Ventricle 18.1183 12.5900 0.0000 86.0000 86.0000
- 20 44 337 380.1 Right-Inf-Lat-Vent 38.6884 13.8192 6.0000 76.0000 70.0000
- 21 46 11359 11712.7 Right-Cerebellum-White-Matter 78.6437 8.2964 15.0000 104.0000 89.0000
- 22 47 53593 53809.3 Right-Cerebellum-Cortex 52.3057 10.7115 4.0000 92.0000 88.0000
- 23 49 7622 7431.4 Right-Thalamus-Proper 78.0905 9.5382 34.0000 106.0000 72.0000
- 24 50 4954 4915.7 Right-Caudate 67.0149 8.6831 28.0000 100.0000 72.0000
- 25 51 5224 5258.1 Right-Putamen 70.7690 6.9910 38.0000 101.0000 63.0000
- 26 52 1788 1660.9 Right-Pallidum 87.0319 6.0882 57.0000 106.0000 49.0000
- 27 53 3628 3458.9 Right-Hippocampus 58.6020 9.8216 11.0000 104.0000 93.0000
- 28 54 1775 1698.9 Right-Amygdala 57.4361 8.1904 16.0000 81.0000 65.0000
- 29 58 621 580.6 Right-Accumbens-area 64.1659 6.4496 43.0000 88.0000 45.0000
- 30 60 3633 3538.1 Right-VentralDC 83.1486 12.6171 10.0000 121.0000 111.0000
- 31 62 14 18.2 Right-vessel 47.0714 12.8150 25.0000 65.0000 40.0000
- 32 63 752 654.1 Right-choroid-plexus 44.9614 13.8133 14.0000 78.0000 64.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1134 1029.0 WM-hypointensities 68.1623 12.2688 18.0000 100.0000 82.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 128 141.3 Optic-Chiasm 72.2812 23.5385 17.0000 117.0000 100.0000
- 41 251 790 741.0 CC_Posterior 103.3000 16.4139 33.0000 125.0000 92.0000
- 42 252 399 340.6 CC_Mid_Posterior 95.0551 21.7269 21.0000 127.0000 106.0000
- 43 253 447 398.5 CC_Central 102.0604 18.7157 38.0000 126.0000 88.0000
- 44 254 453 408.6 CC_Mid_Anterior 102.8808 20.6448 43.0000 129.0000 86.0000
- 45 255 851 795.4 CC_Anterior 106.6592 20.4504 30.0000 138.0000 108.0000
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