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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051252
- # sysname Linux
- # hostname tars-536
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051252
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1302631.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1290104.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1290420.137104, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9529.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 307339.643368, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 316827.676185, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 624167.319552, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 226858.260285, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 229016.557267, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 455874.817552, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 62674.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 808883.319552, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1155169.137104, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1145640.137104, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1142267.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1677775.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.814172, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.048645, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 42, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 30, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 72, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1599945.171179, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 05:29:23
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 21:47:58
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 21:47:58
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 3879 4275.1 Left-Lateral-Ventricle 25.4622 15.6280 0.0000 84.0000 84.0000
- 2 5 235 256.7 Left-Inf-Lat-Vent 40.7617 15.0044 0.0000 79.0000 79.0000
- 3 7 12935 13341.8 Left-Cerebellum-White-Matter 81.6330 8.1051 23.0000 109.0000 86.0000
- 4 8 58860 59140.8 Left-Cerebellum-Cortex 49.2656 12.4158 0.0000 95.0000 95.0000
- 5 10 8392 8020.2 Left-Thalamus-Proper 78.7661 11.0687 25.0000 114.0000 89.0000
- 6 11 4060 4001.7 Left-Caudate 68.4456 8.5948 35.0000 104.0000 69.0000
- 7 12 5584 5491.0 Left-Putamen 74.2865 7.9016 27.0000 108.0000 81.0000
- 8 13 2181 2147.5 Left-Pallidum 94.4223 6.4906 39.0000 113.0000 74.0000
- 9 14 655 759.1 3rd-Ventricle 35.3634 13.4464 3.0000 75.0000 72.0000
- 10 15 1661 1761.0 4th-Ventricle 15.5894 11.8338 0.0000 61.0000 61.0000
- 11 16 20266 20433.5 Brain-Stem 78.2439 10.7034 3.0000 120.0000 117.0000
- 12 17 4466 4311.1 Left-Hippocampus 54.4236 9.9270 0.0000 93.0000 93.0000
- 13 18 1769 1733.0 Left-Amygdala 55.3804 8.2948 12.0000 87.0000 75.0000
- 14 24 682 749.4 CSF 35.9985 12.0427 6.0000 74.0000 68.0000
- 15 26 798 796.2 Left-Accumbens-area 63.4424 6.2081 37.0000 91.0000 54.0000
- 16 28 4470 4361.4 Left-VentralDC 87.2727 13.3310 34.0000 122.0000 88.0000
- 17 30 22 30.1 Left-vessel 50.0000 13.6102 18.0000 68.0000 50.0000
- 18 31 640 530.4 Left-choroid-plexus 47.0281 13.7407 18.0000 91.0000 73.0000
- 19 43 3680 3938.0 Right-Lateral-Ventricle 26.4924 15.9993 0.0000 83.0000 83.0000
- 20 44 277 308.2 Right-Inf-Lat-Vent 31.1227 15.1598 1.0000 70.0000 69.0000
- 21 46 12690 13133.0 Right-Cerebellum-White-Matter 78.7094 7.6350 25.0000 104.0000 79.0000
- 22 47 61738 61994.4 Right-Cerebellum-Cortex 51.9551 10.8212 0.0000 94.0000 94.0000
- 23 49 8093 7768.9 Right-Thalamus-Proper 79.6957 10.6284 25.0000 110.0000 85.0000
- 24 50 4177 4188.4 Right-Caudate 67.7304 8.4113 32.0000 104.0000 72.0000
- 25 51 5550 5477.3 Right-Putamen 73.9236 8.4907 24.0000 107.0000 83.0000
- 26 52 2032 1985.5 Right-Pallidum 93.6093 6.0207 63.0000 115.0000 52.0000
- 27 53 4495 4325.7 Right-Hippocampus 59.0289 9.1989 18.0000 98.0000 80.0000
- 28 54 1576 1489.2 Right-Amygdala 57.7259 8.1172 26.0000 97.0000 71.0000
- 29 58 693 665.1 Right-Accumbens-area 62.5483 6.9772 42.0000 89.0000 47.0000
- 30 60 4392 4243.1 Right-VentralDC 87.1582 13.1996 32.0000 123.0000 91.0000
- 31 62 15 20.8 Right-vessel 47.8000 13.0559 22.0000 68.0000 46.0000
- 32 63 818 748.1 Right-choroid-plexus 49.7090 13.1831 16.0000 85.0000 69.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 974 884.7 WM-hypointensities 67.9589 12.9436 6.0000 105.0000 99.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 177 197.3 Optic-Chiasm 79.3333 19.5703 14.0000 116.0000 102.0000
- 41 251 828 808.1 CC_Posterior 100.8333 12.7161 43.0000 121.0000 78.0000
- 42 252 596 542.3 CC_Mid_Posterior 95.5520 19.7671 9.0000 124.0000 115.0000
- 43 253 899 815.0 CC_Central 93.1680 18.5583 22.0000 124.0000 102.0000
- 44 254 526 489.6 CC_Mid_Anterior 103.2738 17.4829 42.0000 134.0000 92.0000
- 45 255 991 930.0 CC_Anterior 106.1877 17.6048 17.0000 140.0000 123.0000
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