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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051142
- # sysname Linux
- # hostname tars-904
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051142
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1434747.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1406934.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1407093.745855, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 23564.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 322444.001004, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 320340.185947, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 642784.186951, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 260858.379330, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 258110.179574, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 518968.558904, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 65463.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 855223.186951, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1254038.745855, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1230474.745855, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1226970.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1944131.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.767470, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.039948, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 45, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 34, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 79, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1869450.792645, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 05:43:13
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 20:53:19
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 20:53:19
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 9786 9963.0 Left-Lateral-Ventricle 30.0690 13.0720 4.0000 92.0000 88.0000
- 2 5 236 258.5 Left-Inf-Lat-Vent 41.9322 14.5846 13.0000 93.0000 80.0000
- 3 7 16391 16963.2 Left-Cerebellum-White-Matter 84.0777 6.4333 12.0000 104.0000 92.0000
- 4 8 70519 70303.3 Left-Cerebellum-Cortex 62.3668 10.0275 8.0000 95.0000 87.0000
- 5 10 9197 8916.8 Left-Thalamus-Proper 87.2213 8.4115 36.0000 110.0000 74.0000
- 6 11 4373 4403.6 Left-Caudate 77.9634 6.5674 47.0000 107.0000 60.0000
- 7 12 5534 5539.8 Left-Putamen 81.8657 5.5134 44.0000 105.0000 61.0000
- 8 13 2162 2075.9 Left-Pallidum 94.4870 4.8076 49.0000 115.0000 66.0000
- 9 14 956 1025.2 3rd-Ventricle 36.6580 12.5848 12.0000 76.0000 64.0000
- 10 15 2070 2173.0 4th-Ventricle 30.0734 11.6594 3.0000 77.0000 74.0000
- 11 16 25904 25653.1 Brain-Stem 85.0150 9.3528 9.0000 132.0000 123.0000
- 12 17 4231 4110.7 Left-Hippocampus 68.3701 8.5127 19.0000 106.0000 87.0000
- 13 18 2124 2053.5 Left-Amygdala 70.3107 5.8614 37.0000 93.0000 56.0000
- 14 24 1223 1181.4 CSF 49.1693 14.3937 14.0000 107.0000 93.0000
- 15 26 473 492.6 Left-Accumbens-area 78.0571 5.2086 46.0000 92.0000 46.0000
- 16 28 4654 4438.9 Left-VentralDC 89.6648 10.0999 26.0000 115.0000 89.0000
- 17 30 14 23.0 Left-vessel 61.7143 5.7570 51.0000 70.0000 19.0000
- 18 31 450 413.7 Left-choroid-plexus 51.0778 12.6957 19.0000 76.0000 57.0000
- 19 43 12213 12286.6 Right-Lateral-Ventricle 27.7779 11.4046 9.0000 93.0000 84.0000
- 20 44 335 370.3 Right-Inf-Lat-Vent 38.8000 14.5612 5.0000 89.0000 84.0000
- 21 46 16472 17097.9 Right-Cerebellum-White-Matter 85.7391 6.1063 17.0000 104.0000 87.0000
- 22 47 74683 74750.2 Right-Cerebellum-Cortex 62.2347 10.6075 0.0000 97.0000 97.0000
- 23 49 8339 8002.7 Right-Thalamus-Proper 86.5856 8.6221 34.0000 106.0000 72.0000
- 24 50 4622 4605.6 Right-Caudate 77.8767 6.6466 43.0000 103.0000 60.0000
- 25 51 5534 5538.7 Right-Putamen 82.4556 5.3589 45.0000 107.0000 62.0000
- 26 52 2246 2193.5 Right-Pallidum 95.2952 4.3122 76.0000 110.0000 34.0000
- 27 53 4673 4557.9 Right-Hippocampus 69.3860 7.8362 36.0000 102.0000 66.0000
- 28 54 2103 2048.3 Right-Amygdala 70.2710 6.6018 44.0000 95.0000 51.0000
- 29 58 531 499.5 Right-Accumbens-area 77.3672 5.6677 47.0000 123.0000 76.0000
- 30 60 4695 4475.7 Right-VentralDC 89.9651 10.3880 32.0000 119.0000 87.0000
- 31 62 25 37.7 Right-vessel 54.9600 9.4405 31.0000 69.0000 38.0000
- 32 63 546 516.1 Right-choroid-plexus 48.9744 12.1800 16.0000 80.0000 64.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 363 318.5 WM-hypointensities 68.2837 9.3734 45.0000 94.0000 49.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 129 123.9 Optic-Chiasm 73.7674 20.2749 25.0000 111.0000 86.0000
- 41 251 1229 1148.3 CC_Posterior 99.5330 13.0959 38.0000 114.0000 76.0000
- 42 252 850 768.6 CC_Mid_Posterior 94.2588 16.8993 31.0000 118.0000 87.0000
- 43 253 618 556.9 CC_Central 96.7718 16.2258 38.0000 114.0000 76.0000
- 44 254 648 577.8 CC_Mid_Anterior 95.6883 18.3752 30.0000 117.0000 87.0000
- 45 255 1355 1257.2 CC_Anterior 100.6376 18.7348 12.0000 141.0000 129.0000
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