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ABIDE_fs-6.0.0
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ABIDE_fs-6.0.0
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0050960
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050960 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-567
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050960
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1162151.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1153276.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1153352.448542, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 6541.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 222412.813465, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 218287.605220, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 440700.418685, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 263581.701761, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 265865.328096, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 529447.029856, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 56408.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 594155.418685, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1036567.448542, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1030026.448542, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1026335.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1598985.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.904749, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.244830, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 34, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 53, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 87, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1284501.147267, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 02:55:11 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:42:03 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:42:03 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      2827     3177.9  Left-Lateral-Ventricle            32.6013    16.3572     0.0000    96.0000    96.0000 
    82. 

  82.   2   5       177      231.0  Left-Inf-Lat-Vent                 45.0000    12.4078    14.0000    69.0000    55.0000 
    83. 

  83.   3   7     15458    15790.9  Left-Cerebellum-White-Matter      79.6441    10.1886    17.0000   108.0000    91.0000 
    84. 

  84.   4   8     48923    49146.6  Left-Cerebellum-Cortex            43.8959    13.1656     0.0000   101.0000   101.0000 
    85. 

  85.   5  10      7756     7543.5  Left-Thalamus-Proper              88.8116    11.0703    37.0000   115.0000    78.0000 
    86. 

  86.   6  11      3123     3042.7  Left-Caudate                      72.4320     9.1444    40.0000   110.0000    70.0000 
    87. 

  87.   7  12      5248     5256.5  Left-Putamen                      79.2430     8.3620    53.0000   104.0000    51.0000 
    88. 

  88.   8  13      2044     2009.6  Left-Pallidum                     96.6018     5.8231    72.0000   115.0000    43.0000 
    89. 

  89.   9  14       657      781.4  3rd-Ventricle                     39.3714    13.4848     5.0000    71.0000    66.0000 
    90. 

  90.  10  15      1049     1148.7  4th-Ventricle                     21.5110    14.7823     0.0000    68.0000    68.0000 
    91. 

  91.  11  16     19628    19470.2  Brain-Stem                        84.2974    11.1489    22.0000   185.0000   163.0000 
    92. 

  92.  12  17      3718     3701.6  Left-Hippocampus                  62.6116     9.4759    25.0000   103.0000    78.0000 
    93. 

  93.  13  18      1555     1506.3  Left-Amygdala                     63.1524     8.0525    33.0000    83.0000    50.0000 
    94. 

  94.  14  24       628      645.6  CSF                               39.2006    14.6457     3.0000    92.0000    89.0000 
    95. 

  95.  15  26       595      583.0  Left-Accumbens-area               63.1546     6.3043    47.0000    90.0000    43.0000 
    96. 

  96.  16  28      4253     4048.7  Left-VentralDC                    90.5257    14.4449    18.0000   159.0000   141.0000 
    97. 

  97.  17  30         7       13.6  Left-vessel                       59.7143     6.0198    47.0000    66.0000    19.0000 
    98. 

  98.  18  31       390      359.8  Left-choroid-plexus               55.1692    15.0443    18.0000    83.0000    65.0000 
    99. 

  99.  19  43      2654     3065.7  Right-Lateral-Ventricle           31.4069    15.0563     0.0000    80.0000    80.0000 
    100. 

  100.  20  44       143      178.6  Right-Inf-Lat-Vent                41.0210    13.9332     0.0000    73.0000    73.0000 
    101. 

  101.  21  46     14275    14591.9  Right-Cerebellum-White-Matter     77.2758     9.9457    25.0000   111.0000    86.0000 
    102. 

  102.  22  47     46243    46168.6  Right-Cerebellum-Cortex           42.2071    13.4556     0.0000   101.0000   101.0000 
    103. 

  103.  23  49      7003     6648.2  Right-Thalamus-Proper             86.4906    10.7877    26.0000   134.0000   108.0000 
    104. 

  104.  24  50      3374     3227.7  Right-Caudate                     72.0139     9.9120    35.0000   108.0000    73.0000 
    105. 

  105.  25  51      5151     5069.1  Right-Putamen                     79.1142     8.8390    34.0000   105.0000    71.0000 
    106. 

  106.  26  52      2064     2046.5  Right-Pallidum                    97.3556     6.3656    41.0000   113.0000    72.0000 
    107. 

  107.  27  53      3937     3934.8  Right-Hippocampus                 62.4371     9.6431     8.0000   124.0000   116.0000 
    108. 

  108.  28  54      1619     1564.0  Right-Amygdala                    63.6498     8.4420    35.0000    90.0000    55.0000 
    109. 

  109.  29  58       736      709.2  Right-Accumbens-area              64.6060     7.2822    48.0000    90.0000    42.0000 
    110. 

  110.  30  60      4284     3984.7  Right-VentralDC                   90.5135    13.2770    26.0000   149.0000   123.0000 
    111. 

  111.  31  62        10       20.1  Right-vessel                      56.8000     6.8281    47.0000    67.0000    20.0000 
    112. 

  112.  32  63       350      316.3  Right-choroid-plexus              51.7771    14.4356    21.0000    78.0000    57.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1660     1540.2  WM-hypointensities                68.2319    11.3043    32.0000   108.0000    76.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       165      143.8  Optic-Chiasm                      77.4545    17.8238    25.0000   117.0000    92.0000 
    121. 

  121.  41 251       869      801.6  CC_Posterior                     101.8159    15.5726    33.0000   125.0000    92.0000 
    122. 

  122.  42 252       642      592.4  CC_Mid_Posterior                  93.6355    19.1557     0.0000   121.0000   121.0000 
    123. 

  123.  43 253       626      573.0  CC_Central                        96.5815    15.0381    40.0000   117.0000    77.0000 
    124. 

  124.  44 254       824      742.2  CC_Mid_Anterior                   91.7476    22.4117    10.0000   153.0000   143.0000 
    125. 

  125.  45 255      1052     1018.0  CC_Anterior                      104.6008    16.4512    49.0000   155.0000   106.0000 
    126.