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ABIDE_fs-6.0.0
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0050690
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050690 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-611
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050690
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1165590.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1153184.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1153264.461146, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9764.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 235734.042061, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 237501.944153, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 473235.986214, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 235802.380976, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 240749.093956, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 476551.474931, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 61432.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 650677.986214, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1022409.461146, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1012645.461146, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1011042.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1635997.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.823537, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.155899, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 12, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 14, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 26, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1415346.356395, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 01:07:14 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:03:47 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:03:47 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      3899     4289.8  Left-Lateral-Ventricle            22.2506    14.5712     0.0000    78.0000    78.0000 
    82. 

  82.   2   5       299      354.1  Left-Inf-Lat-Vent                 40.6054    13.1058     9.0000    86.0000    77.0000 
    83. 

  83.   3   7     13371    13757.8  Left-Cerebellum-White-Matter      82.3080     7.8586    20.0000   110.0000    90.0000 
    84. 

  84.   4   8     57890    58293.1  Left-Cerebellum-Cortex            50.6223    10.5833     4.0000   103.0000    99.0000 
    85. 

  85.   5  10      7731     7349.6  Left-Thalamus-Proper              81.9334    11.6109    24.0000   108.0000    84.0000 
    86. 

  86.   6  11      3906     3868.0  Left-Caudate                      64.4219     8.4810    33.0000    91.0000    58.0000 
    87. 

  87.   7  12      5568     5474.7  Left-Putamen                      74.3310     6.6535    52.0000   100.0000    48.0000 
    88. 

  88.   8  13      2157     2105.2  Left-Pallidum                     94.1099     4.7832    73.0000   111.0000    38.0000 
    89. 

  89.   9  14       605      700.1  3rd-Ventricle                     34.6397    13.9759     2.0000    69.0000    67.0000 
    90. 

  90.  10  15      1347     1526.4  4th-Ventricle                     18.5390    11.5604     1.0000    65.0000    64.0000 
    91. 

  91.  11  16     21853    21956.2  Brain-Stem                        79.7286     9.7622     9.0000   112.0000   103.0000 
    92. 

  92.  12  17      4288     4182.5  Left-Hippocampus                  56.4879     9.7424    13.0000    93.0000    80.0000 
    93. 

  93.  13  18      2304     2245.9  Left-Amygdala                     59.6228     6.4826    29.0000    94.0000    65.0000 
    94. 

  94.  14  24       690      741.6  CSF                               33.6913    15.1997     2.0000    82.0000    80.0000 
    95. 

  95.  15  26       744      765.0  Left-Accumbens-area               63.6747     6.0806    37.0000    87.0000    50.0000 
    96. 

  96.  16  28      4526     4346.8  Left-VentralDC                    87.6012    12.1172    37.0000   117.0000    80.0000 
    97. 

  97.  17  30        20       34.8  Left-vessel                       56.7000     7.2337    42.0000    71.0000    29.0000 
    98. 

  98.  18  31       457      377.3  Left-choroid-plexus               47.4398    13.4256    21.0000    78.0000    57.0000 
    99. 

  99.  19  43      4178     4569.9  Right-Lateral-Ventricle           22.3267    15.2076     2.0000    77.0000    75.0000 
    100. 

  100.  20  44       290      337.5  Right-Inf-Lat-Vent                35.8655    13.3133     5.0000    71.0000    66.0000 
    101. 

  101.  21  46     12633    13124.2  Right-Cerebellum-White-Matter     83.3846     7.5891    33.0000   117.0000    84.0000 
    102. 

  102.  22  47     57854    58359.5  Right-Cerebellum-Cortex           50.3233    10.5611     5.0000   109.0000   104.0000 
    103. 

  103.  23  49      7688     7335.4  Right-Thalamus-Proper             81.3936    10.8746    17.0000   104.0000    87.0000 
    104. 

  104.  24  50      4116     4022.5  Right-Caudate                     62.9164     9.2058    28.0000    93.0000    65.0000 
    105. 

  105.  25  51      5415     5289.0  Right-Putamen                     70.8765     8.1181    33.0000    94.0000    61.0000 
    106. 

  106.  26  52      1774     1657.7  Right-Pallidum                    90.8681     5.5544    74.0000   105.0000    31.0000 
    107. 

  107.  27  53      4158     4086.7  Right-Hippocampus                 54.8870     9.1332    16.0000    96.0000    80.0000 
    108. 

  108.  28  54      1893     1843.0  Right-Amygdala                    55.6873     7.9126    26.0000    84.0000    58.0000 
    109. 

  109.  29  58       751      708.9  Right-Accumbens-area              59.1238     7.0795    33.0000    92.0000    59.0000 
    110. 

  110.  30  60      4472     4389.4  Right-VentralDC                   88.1735    11.7370    36.0000   127.0000    91.0000 
    111. 

  111.  31  62        11       18.1  Right-vessel                      52.5455     7.8021    43.0000    70.0000    27.0000 
    112. 

  112.  32  63       660      535.1  Right-choroid-plexus              44.0333    14.0604    16.0000    78.0000    62.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1412     1199.6  WM-hypointensities                65.8541    13.2064    16.0000    99.0000    83.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       140      146.6  Optic-Chiasm                      80.7500    20.9529    26.0000   124.0000    98.0000 
    121. 

  121.  41 251       977      944.7  CC_Posterior                     102.4023    14.3400    36.0000   121.0000    85.0000 
    122. 

  122.  42 252       606      539.8  CC_Mid_Posterior                  95.2409    21.5783     4.0000   126.0000   122.0000 
    123. 

  123.  43 253       549      504.6  CC_Central                        94.3862    18.3861    28.0000   121.0000    93.0000 
    124. 

  124.  44 254       493      455.3  CC_Mid_Anterior                   97.4077    16.8727    42.0000   117.0000    75.0000 
    125. 

  125.  45 255       887      834.5  CC_Anterior                       98.8095    17.9133    15.0000   141.0000   126.0000 
    126.