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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050612
- # sysname Linux
- # hostname tars-599
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050612
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1257057.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1238178.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1237547.078785, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 14327.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 269440.847036, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 290775.121925, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 560215.968961, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 226475.665762, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 233634.444061, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 460110.109823, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63868.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 750028.968961, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1101348.078785, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1087021.078785, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1084693.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1775832.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.832374, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.175886, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 76, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 59, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 135, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1510207.463666, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 09:58:54
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/08 02:13:06
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/08 02:13:06
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5793 6265.8 Left-Lateral-Ventricle 28.9113 13.9053 0.0000 79.0000 79.0000
- 2 5 532 595.9 Left-Inf-Lat-Vent 39.3496 14.3157 5.0000 76.0000 71.0000
- 3 7 13838 14266.8 Left-Cerebellum-White-Matter 82.7231 8.2436 25.0000 105.0000 80.0000
- 4 8 62800 63250.9 Left-Cerebellum-Cortex 54.7839 9.4598 16.0000 86.0000 70.0000
- 5 10 7831 7495.9 Left-Thalamus-Proper 84.9070 10.5163 31.0000 110.0000 79.0000
- 6 11 4167 4091.5 Left-Caudate 70.3432 9.1430 39.0000 95.0000 56.0000
- 7 12 5745 5699.3 Left-Putamen 79.5777 6.6375 58.0000 100.0000 42.0000
- 8 13 2234 2141.9 Left-Pallidum 99.4848 5.6503 70.0000 115.0000 45.0000
- 9 14 1207 1288.7 3rd-Ventricle 42.0630 12.6058 9.0000 80.0000 71.0000
- 10 15 2253 2418.8 4th-Ventricle 25.5286 12.3016 2.0000 71.0000 69.0000
- 11 16 21121 21012.9 Brain-Stem 82.7819 11.7216 21.0000 139.0000 118.0000
- 12 17 4242 4104.0 Left-Hippocampus 62.3489 8.9933 22.0000 98.0000 76.0000
- 13 18 1676 1618.6 Left-Amygdala 63.0066 8.1301 28.0000 89.0000 61.0000
- 14 24 1092 1147.7 CSF 45.3068 12.5063 10.0000 74.0000 64.0000
- 15 26 823 821.2 Left-Accumbens-area 68.4629 5.5922 38.0000 85.0000 47.0000
- 16 28 4776 4523.8 Left-VentralDC 91.3633 13.3814 22.0000 129.0000 107.0000
- 17 30 2 8.7 Left-vessel 55.5000 0.7071 55.0000 56.0000 1.0000
- 18 31 713 662.3 Left-choroid-plexus 50.5386 14.8895 24.0000 85.0000 61.0000
- 19 43 6290 6727.9 Right-Lateral-Ventricle 28.0700 14.5344 0.0000 81.0000 81.0000
- 20 44 395 438.3 Right-Inf-Lat-Vent 37.6456 13.4974 9.0000 77.0000 68.0000
- 21 46 13556 14107.4 Right-Cerebellum-White-Matter 81.0160 7.1628 22.0000 106.0000 84.0000
- 22 47 62062 62242.2 Right-Cerebellum-Cortex 55.1025 9.0036 16.0000 102.0000 86.0000
- 23 49 8628 8250.0 Right-Thalamus-Proper 84.3627 10.1171 25.0000 109.0000 84.0000
- 24 50 4274 4184.2 Right-Caudate 68.7068 9.1534 36.0000 92.0000 56.0000
- 25 51 5745 5723.6 Right-Putamen 77.5173 6.7156 51.0000 96.0000 45.0000
- 26 52 2133 1983.7 Right-Pallidum 94.3591 5.6878 68.0000 111.0000 43.0000
- 27 53 4481 4303.3 Right-Hippocampus 62.2642 8.9906 25.0000 102.0000 77.0000
- 28 54 1860 1766.6 Right-Amygdala 60.8027 8.7194 27.0000 87.0000 60.0000
- 29 58 752 702.0 Right-Accumbens-area 66.2221 5.8106 45.0000 95.0000 50.0000
- 30 60 4583 4402.7 Right-VentralDC 90.6779 12.9099 22.0000 120.0000 98.0000
- 31 62 12 27.2 Right-vessel 56.5833 4.1661 48.0000 61.0000 13.0000
- 32 63 617 536.7 Right-choroid-plexus 49.9984 13.8791 23.0000 86.0000 63.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1987 1762.5 WM-hypointensities 68.0700 14.6317 6.0000 103.0000 97.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 148 142.2 Optic-Chiasm 70.2838 16.7149 27.0000 106.0000 79.0000
- 41 251 865 778.8 CC_Posterior 100.7272 18.9001 39.0000 125.0000 86.0000
- 42 252 549 490.4 CC_Mid_Posterior 91.9399 18.0040 36.0000 122.0000 86.0000
- 43 253 518 463.6 CC_Central 94.5000 19.0228 40.0000 119.0000 79.0000
- 44 254 690 608.7 CC_Mid_Anterior 95.0913 21.3204 36.0000 120.0000 84.0000
- 45 255 971 926.9 CC_Anterior 106.6684 16.7296 30.0000 152.0000 122.0000
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